TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.1
(1019 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 151 6e-040
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 99 3e-035
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 85 3e-035
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 85 3e-035
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 131 9e-035
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 94 1e-034
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 85 7e-034
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 107 1e-033
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 94 2e-033
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 94 4e-033
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 94 4e-033
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 94 4e-033
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 92 4e-033
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 131 5e-033
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 91 6e-033
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 86 7e-033
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 138 3e-032
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 138 3e-032
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 90 5e-032
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 98 6e-032
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 98 1e-031
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 98 2e-031
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 84 2e-031
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 84 8e-031
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 89 3e-030
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 132 3e-030
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 96 4e-030
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 93 5e-030
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 94 2e-026
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 96 4e-026
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 115 4e-025
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 113 1e-024
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 67 1e-024
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 91 2e-024
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 68 3e-024
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 62 3e-023
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 68 8e-023
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 67 1e-022
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 51 5e-022
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 151 bits (324), Expect(2) = 6e-040
Identities = 57/126 (45%), Positives = 84/126 (66%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P F +IA +AGIVP++YR+VAC++KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 210 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 389
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGK 785
A+ VK + W + R+WGQ W + L G+ L+FRV + + S + PR W FG+
Sbjct: 390 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQ 569
Query: 786 TYQATK 803
T+ +
Sbjct: 570 TFSGAQ 587
Score = 33.6 bits (67), Expect(2) = 6e-040
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3 / +3
Query: 303 PSLYTNGTGCGACYELKGPKGTVVVTATNEAPP 401
P+L+ NG CGAC+E++ G A + P
Sbjct: 21 PALFNNGLSCGACFEVRCDPGGTEAGAPHACLP 119
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 99.1 bits (210), Expect(4) = 3e-035
Identities = 37/68 (54%), Positives = 54/68 (79%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL IA+ +AGIVP++YR+V C +KGGIR+TI G+ +++ V VTNV GAGD
Sbjct: 474 HFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVXGAGDAR 653
Query: 606 ALWVKGNK 629
++++KG +
Sbjct: 654 SVFIKGTR 677
Score = 54.2 bits (112), Expect(4) = 3e-035
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 231 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELR 353
Score = 27.2 bits (53), Expect(4) = 3e-035
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 183 WQSAHATFYGGGD 221
Score = 24.0 bits (46), Expect(4) = 3e-035
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
G+++VTATN PP
Sbjct: 384 GSIMVTATNFCPP 422
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 85.4 bits (180), Expect(4) = 3e-035
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +3 / +3
Query: 405 VSGQKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNV 584
V HF L I AF KIA KAG++PI YR+V C R+GG+R++++G + V ++NV
Sbjct: 129 VCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNV 308
Query: 585 GGAGDVVALWVKG 623
GGAGDV ++ +KG
Sbjct: 309 GGAGDVRSVKIKG 347
Score = 73.0 bits (153), Expect(4) = 3e-035
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
W M R+WGQ+W +DLTG+ ++F + ++D T+++V P+DW+FGKTY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 24.0 bits (46), Expect(4) = 3e-035
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 357 PKGTVVVTATNEAPP 401
P ++VVTATN PP
Sbjct: 54 PGTSIVVTATNFCPP 98
Score = 22.1 bits (42), Expect(4) = 3e-035
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3 / +3
Query: 330 CGACYELK 353
CG CYE+K
Sbjct: 3 CGGCYEVK 26
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 85.4 bits (180), Expect(4) = 3e-035
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +3 / +3
Query: 405 VSGQKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNV 584
V HF L I AF KIA KAG++PI YR+V C R+GG+R++++G + V ++NV
Sbjct: 129 VCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNV 308
Query: 585 GGAGDVVALWVKG 623
GGAGDV ++ +KG
Sbjct: 309 GGAGDVRSVKIKG 347
Score = 73.0 bits (153), Expect(4) = 3e-035
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
W M R+WGQ+W +DLTG+ ++F + ++D T+++V P+DW+FGKTY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 24.0 bits (46), Expect(4) = 3e-035
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 357 PKGTVVVTATNEAPP 401
P ++VVTATN PP
Sbjct: 54 PGTSIVVTATNFCPP 98
Score = 22.1 bits (42), Expect(4) = 3e-035
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3 / +3
Query: 330 CGACYELK 353
CG CYE+K
Sbjct: 3 CGGCYEVK 26
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 131 bits (280), Expect(2) = 9e-035
Identities = 50/98 (51%), Positives = 71/98 (72%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P F +IA +AGIVP++YR+VAC++KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 206 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 385
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRV 719
A+ VK + W + R+WGQ W + L G+ L+FRV
Sbjct: 386 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 499
Score = 36.3 bits (73), Expect(2) = 9e-035
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3 / +2
Query: 288 TAAVGPSLYTNGTGCGACYELKGPKGTVVVTATNEAPP 401
TAA+ +L+ NG CGAC+E++ G A + P
Sbjct: 2 TAALSTALFNNGLSCGACFEVRCDPGGTEAGAPHACLP 115
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 93.6 bits (198), Expect(3) = 1e-034
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 136 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 315
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 316 SVSIKGS 336
Score = 68.4 bits (143), Expect(3) = 1e-034
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 794
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 346 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 501
Score = 23.1 bits (44), Expect(3) = 1e-034
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 46 GSITITATNLCPP 84
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 85.4 bits (180), Expect(3) = 7e-034
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +3 / +3
Query: 405 VSGQKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNV 584
V HF L I AF KIA KAG++PI YR+V C R+GG+R++++G + V ++NV
Sbjct: 129 VCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNV 308
Query: 585 GGAGDVVALWVKG 623
GGAGDV ++ +KG
Sbjct: 309 GGAGDVRSVKIKG 347
Score = 73.0 bits (153), Expect(3) = 7e-034
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
W M R+WGQ+W +DLTG+ ++F + ++D T+++V P+DW+FGKTY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 24.0 bits (46), Expect(3) = 7e-034
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 357 PKGTVVVTATNEAPP 401
P ++VVTATN PP
Sbjct: 54 PGTSIVVTATNFCPP 98
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 107 bits (228), Expect(3) = 1e-033
Identities = 39/102 (38%), Positives = 66/102 (64%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+ KI + GI+P+ Y++V C ++GG+R+ + G+ +++ V V+NV AG +
Sbjct: 274 HFDMAQPAWEKIGVYRGGIIPVMYQRVPCVKRGGVRFKMNGHDYFNLVLVSNVAAAGSIQ 453
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTAD 731
++ VK + W PM R+WG W + +LTG+ L FR+ +D
Sbjct: 454 SMDVKCSDSEDWMPMARNWGANWHSLANLTGKMLAFRLTNSD 579
Score = 50.1 bits (103), Expect(3) = 1e-033
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYEL 350
T GACGY + YGT TAA+ L+ +G CG CY++
Sbjct: 19 TMGGACGYGNLFSEGYGTRTAALSTVLFNDGAACGQCYKI 138
Score = 24.0 bits (46), Expect(3) = 1e-033
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 357 PKGTVVVTATNEAPP 401
P TV VTATN PP
Sbjct: 178 PGVTVTVTATNFCPP 222
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 93.6 bits (198), Expect(4) = 2e-033
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 279 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 458
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 459 SVSIKGS 479
Score = 55.6 bits (115), Expect(4) = 2e-033
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYELK
Sbjct: 42 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELK 164
Score = 25.8 bits (50), Expect(4) = 2e-033
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLW 674
W M R+WGQ W
Sbjct: 489 WQAMSRNWGQNW 524
Score = 23.1 bits (44), Expect(4) = 2e-033
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 189 GSITITATNLCPP 227
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 93.6 bits (198), Expect(2) = 4e-033
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3 / -3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 631 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 452
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 451 SVSIKGS 431
Score = 68.4 bits (143), Expect(2) = 4e-033
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +3 / -3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 794
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 421 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 266
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 93.6 bits (198), Expect(2) = 4e-033
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 74 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 253
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 254 SVSIKGS 274
Score = 68.4 bits (143), Expect(2) = 4e-033
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +3 / +2
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 794
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 284 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 439
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 93.6 bits (198), Expect(2) = 4e-033
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 60 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 239
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 240 SVSIKGS 260
Score = 68.4 bits (143), Expect(2) = 4e-033
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 794
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 270 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 425
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 91.8 bits (194), Expect(4) = 4e-033
Identities = 34/66 (51%), Positives = 52/66 (78%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 435 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 614
Query: 606 ALWVKG 623
++ ++G
Sbjct: 615 SVSIRG 632
Score = 55.6 bits (115), Expect(4) = 4e-033
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYELK
Sbjct: 198 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELK 320
Score = 26.7 bits (52), Expect(4) = 4e-033
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 150 WQTAHATFYGGGD 188
Score = 23.1 bits (44), Expect(4) = 4e-033
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 345 GSITITATNLCPP 383
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 131 bits (280), Expect(2) = 5e-033
Identities = 50/98 (51%), Positives = 71/98 (72%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P F +IA +AGIVP++YR+VAC++KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 189 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 368
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRV 719
A+ VK + W + R+WGQ W + L G+ L+FRV
Sbjct: 369 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 482
Score = 30.4 bits (60), Expect(2) = 5e-033
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3 / +3
Query: 306 SLYTNGTGCGACYELKGPKGTVVVTATNEAPP 401
+L+ NG CGAC+E++ G A + P
Sbjct: 3 ALFNNGLSCGACFEVRCDPGGTEAGAPHACLP 98
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 91.3 bits (193), Expect(4) = 6e-033
Identities = 35/67 (52%), Positives = 52/67 (77%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
H D+ PA+L+I +AGIVP++YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 412 HCDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQ 591
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 592 SVSIKGS 612
Score = 55.6 bits (115), Expect(4) = 6e-033
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYELK
Sbjct: 175 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELK 297
Score = 26.7 bits (52), Expect(4) = 6e-033
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 127 WQTAHATFYGGGD 165
Score = 23.1 bits (44), Expect(4) = 6e-033
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 322 GSITITATNLCPP 360
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 85.8 bits (181), Expect(5) = 7e-033
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +3 / +3
Query: 444 PAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKG 623
P + +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV ++ +KG
Sbjct: 357 PPTSRSVSTRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKG 536
Query: 624 NKRVKWTPMKRSWGQLW 674
+K P + GQ W
Sbjct: 537 SKLRVGRPCSATGGQNW 587
Score = 55.6 bits (115), Expect(5) = 7e-033
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYELK
Sbjct: 100 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELK 222
Score = 26.7 bits (52), Expect(5) = 7e-033
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 52 WQTAHATFYGGGD 90
Score = 23.1 bits (44), Expect(5) = 7e-033
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 247 GSITITATNLCPP 285
Score = 22.1 bits (42), Expect(5) = 7e-033
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKI 461
HFD+ PA+L+I
Sbjct: 338 HFDMAEPAYLQI 373
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 138 bits (297), Expect = 3e-032
Identities = 53/118 (44%), Positives = 78/118 (66%)
Frame = +3 / +2
Query: 450 FLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNK 629
F +IA +AGIVP++YR+VAC++KGGIR+TI G+ +++ V VTNVGG GDV A+ VK +
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
W + R+WGQ W + L G+ L+FRV + + S + PR W FG+T+ +
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 138 bits (297), Expect = 3e-032
Identities = 53/118 (44%), Positives = 78/118 (66%)
Frame = +3 / +2
Query: 450 FLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNK 629
F +IA +AGIVP++YR+VAC++KGGIR+TI G+ +++ V VTNVGG GDV A+ VK +
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
W + R+WGQ W + L G+ L+FRV + + S + PR W FG+T+ +
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 89.5 bits (189), Expect(4) = 5e-032
Identities = 34/59 (57%), Positives = 47/59 (79%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
HFD+ PA+L+I +AGIVP++YR+V C +KGGIR+TI G+ +++ V VTNV GAGDV
Sbjct: 413 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 56.1 bits (116), Expect(4) = 5e-032
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +3 / +2
Query: 216 GLTDTTDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
G T GACGY YGT TAA+ +L+ +G CG+CYELK
Sbjct: 161 GEASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELK 298
Score = 24.9 bits (48), Expect(4) = 5e-032
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3 / +2
Query: 177 WTDGHATYYGG 209
W HAT+YGG
Sbjct: 128 WQTAHATFYGG 160
Score = 23.1 bits (44), Expect(4) = 5e-032
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 323 GSITITATNLCPP 361
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 97.7 bits (207), Expect(3) = 6e-032
Identities = 37/68 (54%), Positives = 53/68 (77%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL IA+ +AGIVP++YR+V C +KGGIR+TI G+ +++ V VTNV GAGD
Sbjct: 256 HFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDAR 435
Query: 606 ALWVKGNK 629
++ +KG +
Sbjct: 436 SVSIKGTR 459
Score = 54.2 bits (112), Expect(3) = 6e-032
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 13 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELR 135
Score = 24.0 bits (46), Expect(3) = 6e-032
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
G+++VTATN PP
Sbjct: 166 GSIMVTATNFCPP 204
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 97.7 bits (207), Expect(2) = 1e-031
Identities = 35/65 (53%), Positives = 53/65 (81%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFDL P F +IA+ +AG+VP+ YR+VAC + GGIR+TITG+ +++ V +TNV GAGD++
Sbjct: 43 HFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNVAGAGDLM 222
Query: 606 ALWVK 620
+++VK
Sbjct: 223 SVYVK 237
Score = 59.3 bits (123), Expect(2) = 1e-031
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
W M +WG W L G+ L+FRV T+D R TS +V P W FG+T+ ++
Sbjct: 253 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTFAGSQ 417
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 97.7 bits (207), Expect(2) = 2e-031
Identities = 35/65 (53%), Positives = 53/65 (81%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFDL P F +IA+ +AG+VP+ YR+VAC + GGIR+TITG+ +++ V +TNV GAGD++
Sbjct: 91 HFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNVAGAGDLM 270
Query: 606 ALWVK 620
+++VK
Sbjct: 271 SVYVK 285
Score = 58.8 bits (122), Expect(2) = 2e-031
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
W M +WG W L G+ L+FRV T+D R TS +V P W FG+T+
Sbjct: 301 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 84.0 bits (177), Expect(4) = 2e-031
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3 / +1
Query: 405 VSGQKGEHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNV 584
V HF L I AF KIA KAG++PI YR+V C R+GG+R++++G + V ++NV
Sbjct: 247 VCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNV 426
Query: 585 GGAGDVVALWVKG 623
GGAGDV + +KG
Sbjct: 427 GGAGDVRSRKIKG 465
Score = 41.8 bits (85), Expect(4) = 2e-031
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3 / +1
Query: 240 GACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
GACG+ YG T + +L+ G CG CYE+K
Sbjct: 31 GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVK 144
Score = 41.4 bits (84), Expect(4) = 2e-031
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDW 773
W M R+WGQ+W DLTG+ ++F + D T+ + P+ +
Sbjct: 478 WLYMGRNWGQIWVIIFDLTGQPVSFGLTLGDGATKTNNYRVPQGY 612
Score = 24.0 bits (46), Expect(4) = 2e-031
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 357 PKGTVVVTATNEAPP 401
P ++VVTATN PP
Sbjct: 172 PGTSIVVTATNFCPP 216
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 84.0 bits (177), Expect(4) = 8e-031
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGD 599
H D+ PAFL IA+ +AGIVP++YR+V C +KGGIR+TI G+ + + VTNV GAGD
Sbjct: 474 HLDMAEPAFLHIAQYRAGIVPLSYRRVPCVKKGGIRFTINGHSYLNLGLVTNVAGAGD 647
Score = 54.2 bits (112), Expect(4) = 8e-031
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYEL+
Sbjct: 231 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELR 353
Score = 27.2 bits (53), Expect(4) = 8e-031
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 183 WQSAHATFYGGGD 221
Score = 24.0 bits (46), Expect(4) = 8e-031
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
G+++VTATN PP
Sbjct: 384 GSIMVTATNFCPP 422
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 89.0 bits (188), Expect(2) = 3e-030
Identities = 34/62 (54%), Positives = 49/62 (79%)
Frame = +3 / +2
Query: 444 PAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKG 623
PAFL IA+ +AGIVP++YR+V C +KGGIR+TI G+ +++ V VTNV GAGD ++ +KG
Sbjct: 11 PAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKG 190
Query: 624 NK 629
+
Sbjct: 191 TR 196
Score = 63.4 bits (132), Expect(2) = 3e-030
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3 / +2
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATK 803
R W M R+WG W + L G+ L+FRV ++D R TS P WQFG+T++ +
Sbjct: 194 RTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQ 367
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 132 bits (283), Expect = 3e-030
Identities = 51/108 (47%), Positives = 74/108 (68%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD++ P F +IA +AGIVP++YR+VAC++KGGIR+TI G+ +++ V VTNVGG GDV
Sbjct: 83 HFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVH 262
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATS 749
A+ VK + W + R+WGQ W + L G+ L+FRV + + S
Sbjct: 263 AVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVS 406
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 95.9 bits (203), Expect(2) = 4e-030
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PAFL I + +AGIVP++YR+V C +KGGIR+TI G+ +++ V VTNV GAGD
Sbjct: 19 HFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDAR 198
Query: 606 ALWVKGNK 629
++ +KG +
Sbjct: 199 SVSIKGTR 222
Score = 56.1 bits (116), Expect(2) = 4e-030
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3 / +1
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
R W M R+WG W + L G+ L+FRV ++D R TS P WQF +T+
Sbjct: 220 RTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAGWQFRQTF 381
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 93.2 bits (197), Expect(4) = 5e-030
Identities = 35/66 (53%), Positives = 52/66 (78%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 199 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 378
Query: 606 ALWVKG 623
++ +KG
Sbjct: 379 SVSIKG 396
Score = 43.7 bits (89), Expect(4) = 5e-030
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3 / +1
Query: 276 YGTLTAAVGPSLYTNGTGCGACYELK 353
YGT TAA+ +L+ +G CG+CYELK
Sbjct: 7 YGTNTAALSTALFNDGAACGSCYELK 84
Score = 26.7 bits (52), Expect(4) = 5e-030
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTP 764
W P + + D G+ L FRV ++ R H+ P
Sbjct: 408 WRPCPATGARTGKATADFDGQRLFFRVTLSEGRTVYKHHLRP 533
Score = 23.1 bits (44), Expect(4) = 5e-030
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 109 GSITITATNLCPP 147
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 93.6 bits (198), Expect(3) = 2e-026
Identities = 35/67 (52%), Positives = 53/67 (79%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V VTNV GAGDV
Sbjct: 217 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQ 396
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 397 SVSIKGS 417
Score = 40.5 bits (82), Expect(3) = 2e-026
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3 / +2
Query: 279 GTLTAAVGPSLYTNGTGCGACYELK 353
GT TAA+ +L+ +G CG+CYELK
Sbjct: 29 GTNTAALSTALFNDGAACGSCYELK 103
Score = 23.1 bits (44), Expect(3) = 2e-026
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 128 GSITITATNLCPP 166
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 95.9 bits (203), Expect(2) = 4e-026
Identities = 35/69 (50%), Positives = 52/69 (75%)
Frame = +3 / +3
Query: 423 EHFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDV 602
+HFD++ PA+ IA +AGIVP+ Y++V C+R GG+R+TI GN ++ V V NVGG+G V
Sbjct: 402 QHFDMSQPAWETIAIYQAGIVPVNYKRVPCQRSGGMRFTINGNDYFELVTVANVGGSGVV 581
Query: 603 VALWVKGNK 629
+W+KG+K
Sbjct: 582 SQMWIKGSK 608
Score = 45.1 bits (92), Expect(2) = 4e-026
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYEL 350
T GACGY YG +AA+ +L+ NG CG C+ +
Sbjct: 156 TMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCFTI 275
>gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C12
5-PRIME, mRNA sequence
Length = 561
Score = 115 bits (246), Expect = 4e-025
Identities = 45/113 (39%), Positives = 68/113 (60%)
Frame = +3 / +3
Query: 471 KAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGNKRVKWTPM 650
+ GI+PI Y++V C +KGG+R+TI+G+ ++ V TNV AG V A+ V+G+K W M
Sbjct: 15 RGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSGDWMAM 194
Query: 651 KRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQATKNF 809
+WG W + L G+ L+FRV D + V PR W+FG+T+ + F
Sbjct: 195 AHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTFSSNLQF 353
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 113 bits (242), Expect = 1e-024
Identities = 47/114 (41%), Positives = 68/114 (59%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+ KI + GI+PI Y++V C +KGG+R+TI+G+ ++ V TNV AG V
Sbjct: 38 HFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVR 217
Query: 606 ALWVKGNKRVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPR 767
A+ V+G+K W M +WG W + L G+ L+FRV D + V PR
Sbjct: 218 AMDVRGSKSGDWMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPR 379
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 66.6 bits (139), Expect(4) = 1e-024
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTI 542
HFDL +P FL +A+ +AGIVP+ YR+VAC + GG+R+TI
Sbjct: 484 HFDLAMPMFLHMAQYRAGIVPVCYRRVACRKSGGVRFTI 600
Score = 48.3 bits (99), Expect(4) = 1e-024
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3 / +1
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY + YG AA+ +L+ G CGAC+E++
Sbjct: 229 TMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGACFEIR 351
Score = 29.0 bits (57), Expect(4) = 1e-024
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3 / +1
Query: 156 GKFKAEPWTDGHATYYGGRD 215
G + W HAT+YGG D
Sbjct: 160 GVYTGGDWQSAHATFYGGSD 219
Score = 24.0 bits (46), Expect(4) = 1e-024
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3 / +1
Query: 360 KGTVVVTATNEAPP 401
K ++VVTATN PP
Sbjct: 391 KPSIVVTATNFCPP 432
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 91.3 bits (193), Expect(4) = 2e-024
Identities = 34/67 (50%), Positives = 52/67 (77%)
Frame = +3 / +3
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVV 605
HFD+ PA+L+I +AGIVP++YR+V C +KGG+R+TI G+ +++ V TNV GAGDV
Sbjct: 174 HFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLXTNVAGAGDVQ 353
Query: 606 ALWVKGN 626
++ +KG+
Sbjct: 354 SVSIKGS 374
Score = 27.2 bits (53), Expect(4) = 2e-024
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 318 NGTGCGACYELK 353
+G CG+CYELK
Sbjct: 24 DGAACGSCYELK 59
Score = 25.8 bits (50), Expect(4) = 2e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +3
Query: 639 WTPMKRSWGQLW 674
W M R+WGQ W
Sbjct: 384 WQAMSRNWGQNW 419
Score = 23.1 bits (44), Expect(4) = 2e-024
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 84 GSITITATNLCPP 122
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 67.5 bits (141), Expect(3) = 3e-024
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQH 557
HFD+ PA+L+I +AGIVP++YRKV C +KGG+R+TI G+ +
Sbjct: 461 HFDMAEPAYLQIGIYRAGIVPVSYRKVPCVKKGGMRFTINGHSY 592
Score = 55.6 bits (115), Expect(3) = 3e-024
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG+CYELK
Sbjct: 224 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELK 346
Score = 26.7 bits (52), Expect(3) = 3e-024
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 176 WQTAHATFYGGGD 214
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 62.5 bits (130), Expect(4) = 3e-023
Identities = 21/45 (46%), Positives = 35/45 (77%)
Frame = +3 / +2
Query: 426 HFDLTIPAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHY 560
HF + PA+L+I +AGIVP++YR+V C +KGG+R+T+ G+ ++
Sbjct: 299 HFXMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTMNGHAYF 433
Score = 51.0 bits (105), Expect(4) = 3e-023
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +3 / +2
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GACGY YGT TAA+ +L+ +G CG CY LK
Sbjct: 62 TMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLK 184
Score = 26.7 bits (52), Expect(4) = 3e-023
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +2
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 14 WQTAHATFYGGGD 52
Score = 23.1 bits (44), Expect(4) = 3e-023
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 363 GTVVVTATNEAPP 401
G++ +TATN PP
Sbjct: 209 GSITITATNLCPP 247
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 68.4 bits (143), Expect(2) = 8e-023
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +3 / +1
Query: 639 WTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTYQ 794
W M R+WGQ W + DL G+SL+FRV +D R TS + P W FG+T++
Sbjct: 148 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFE 303
Score = 58.8 bits (122), Expect(2) = 8e-023
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = +3 / +1
Query: 495 YRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKGN 626
Y +V C +KGG+R+TI G+ +++ V VTNV GAGDV ++ +KG+
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 138
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 66.6 bits (139), Expect(2) = 1e-022
Identities = 22/62 (35%), Positives = 41/62 (66%)
Frame = +3 / +2
Query: 444 PAFLKIAEEKAGIVPITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKG 623
P + + GIVP+ Y++V C +KGG+R+T+ G+ ++ V V+NVG G + ++ +KG
Sbjct: 53 PPNYALPNDDGGIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKG 232
Query: 624 NK 629
++
Sbjct: 233 SR 238
Score = 60.2 bits (125), Expect(2) = 1e-022
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +3 / +2
Query: 630 RVKWTPMKRSWGQLWTTEVDLTGESLTFRVMTADHRKATSWHVTPRDWQFGKTY 791
R W PM R+WG W + L+G+SL+F+V + D + T +V P W FG+T+
Sbjct: 236 RTGWMPMSRNWGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 50.6 bits (104), Expect(4) = 5e-022
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 231 TDSGACGYKGELGKDYGTLTAAVGPSLYTNGTGCGACYELK 353
T GAC Y+ YGT TAA+ +L+ + CG+CYELK
Sbjct: 228 TMGGACCYRNLYSTGYGTNTAALSTALFNDSAACGSCYELK 350
Score = 48.3 bits (99), Expect(4) = 5e-022
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +3 / +2
Query: 486 PITYRKVACERKGGIRYTITGNQHYSEVKVTNVGGAGDVVALWVKG 623
P +YR+ C +KGG+R+TI G+ +++ TNV GAG++ + +G
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNMPVPFPQG 664
Score = 33.6 bits (67), Expect(4) = 5e-022
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3 / +1
Query: 426 HFDLTIPAFLKIAEEKAGIVPI 491
HFD+ PA+L+I +AGIVP+
Sbjct: 466 HFDMAEPAYLQIGIYRAGIVPV 531
Score = 26.7 bits (52), Expect(4) = 5e-022
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3 / +3
Query: 177 WTDGHATYYGGRD 215
W HAT+YGG D
Sbjct: 180 WQTAHATFYGGGD 218
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 419,217,628
Number of Sequences: 312970
Number of extensions: 6842346
Number of successful extensions: 116218
Number of sequences better than 1.0e-020: 48
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12083773093
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)