TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3128444.2.1
(857 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA,... 121 7e-047
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 95 2e-046
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 105 3e-044
gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA,... 125 4e-044
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 95 6e-044
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 93 1e-042
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 75 6e-042
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 98 2e-041
gb|BF254222.2|BF254222 HVSMEf0003F20f Hordeum vulgare seedl... 98 3e-040
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 95 4e-040
gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. v... 128 4e-040
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 93 5e-040
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 95 2e-039
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 95 2e-039
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 95 2e-039
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 92 4e-039
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 92 4e-039
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 95 8e-039
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 95 2e-038
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 77 5e-038
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 95 2e-037
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 95 5e-037
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 95 5e-037
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 95 5e-037
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 92 5e-037
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 95 6e-037
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 74 1e-036
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 99 3e-036
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 92 2e-035
gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedl... 86 2e-035
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 95 3e-035
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 95 3e-035
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 95 3e-035
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 95 3e-035
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 95 3e-035
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 95 3e-035
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 95 3e-035
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 95 3e-035
gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. v... 148 4e-035
gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. v... 148 4e-035
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 92 4e-035
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 92 4e-035
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 95 2e-034
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 95 2e-034
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 92 4e-034
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 92 4e-034
gb|BI958216.1|BI958216 HVSMEn0013O15f Hordeum vulgare rachi... 97 4e-034
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 97 4e-034
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 88 8e-034
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 92 3e-033
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 95 4e-033
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 95 4e-033
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 94 7e-033
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 128 8e-033
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 92 2e-032
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 95 3e-032
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 89 5e-032
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 92 6e-032
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 95 2e-031
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 60 5e-031
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 95 6e-031
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 97 8e-031
gb|BG301241.1|BG301241 HVSMEb0020C10f Hordeum vulgare seedl... 77 2e-030
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 93 2e-030
gb|AL511635.1|AL511635 AL511635 Hordeum vulgare Barke devel... 98 6e-030
gb|BE437689.1|BE437689 SFR006.D12F990705 ITEC SFR Barley Le... 119 6e-030
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 95 1e-029
gb|BG417583.2|BG417583 HVSMEk0018E23f Hordeum vulgare testa... 79 4e-029
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 94 4e-029
gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DA... 82 5e-029
gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. v... 82 5e-029
gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. v... 82 5e-029
gb|BQ766937.1|BQ766937 EBro08_SQ007_D17_R root, 3 week, dro... 79 8e-029
gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. v... 81 1e-028
gb|BJ462547.1|BJ462547 BJ462547 K. Sato unpublished cDNA li... 79 1e-028
gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike... 82 2e-028
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 94 1e-027
gb|BQ472448.1|BQ472448 HB09J14T BC Hordeum vulgare subsp. v... 123 1e-027
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 77 2e-027
gb|BU968389.1|BU968389 HB07F20r BC Hordeum vulgare subsp. v... 122 4e-027
gb|BU968461.1|BU968461 HB07J14r BC Hordeum vulgare subsp. v... 122 4e-027
gb|BQ472509.1|BQ472509 HB09F20T BC Hordeum vulgare subsp. v... 121 7e-027
gb|BI954140.1|BI954140 HVSMEm0016F19f Hordeum vulgare green... 72 1e-026
gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 ... 92 4e-026
gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA li... 95 7e-026
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 78 7e-026
gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA li... 95 1e-025
gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA li... 95 2e-025
gb|CD662781.1|CD662781 UCRHV18_03ad10_b1 Drought-stressed D... 73 4e-025
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 74 6e-025
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 74 6e-025
gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. v... 94 6e-025
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 95 2e-024
gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA li... 95 3e-024
gb|CB881964.1|CB881964 HM11G24w HM Hordeum vulgare subsp. v... 94 6e-024
gb|BQ755335.1|BQ755335 EBed07_SQ002_G10_R endosperm, 28 DPA... 66 8e-024
gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA li... 92 2e-023
gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke devel... 89 7e-023
gb|BF629833.2|BF629833 HVSMEb0007A10f Hordeum vulgare seedl... 96 1e-022
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 93 3e-022
gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA li... 93 3e-022
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 87 4e-022
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 76 1e-021
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 65 3e-021
gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. v... 92 5e-021
gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. v... 92 5e-021
gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. v... 92 5e-021
gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa... 92 5e-021
>gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_D03 5', mRNA sequence
Length = 695
Score = 121 bits (259), Expect(2) = 7e-047
Identities = 45/122 (36%), Positives = 74/122 (60%)
Frame = +1 / +3
Query: 238 YKVQQMERVEKWSSGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDE 417
Y V + G+ +G +A +E+L + P G+H+L+ Y ++YN+P +YV ENG+D+
Sbjct: 330 YDADNRSNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEG 509
Query: 418 DDQSATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 597
++ S I + L D R+ Y +L + AIK +++GYF W+F+D FEW GY RFG
Sbjct: 510 NNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFG 689
Query: 598 IV 603
++
Sbjct: 690 LI 695
Score = 86.3 bits (182), Expect(2) = 7e-047
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = +1 / +3
Query: 4 TRDQIAAQRRIDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLN 183
T D+ AA+RR++F LGW++DPI GDYP SMR L + LP F+ +R DF+GLN
Sbjct: 90 TADKAAAKRRVEFMLGWFMDPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLN 269
Query: 184 HYTS 195
+YT+
Sbjct: 270 YYTT 281
>gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30c23 5', mRNA sequence
Length = 688
Score = 95.0 bits (201), Expect(3) = 2e-046
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +1 / +2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
+++ ++ND RV Y GYL ++ A++ GA+VRGYF WS +DNFEW G+T RFG+ YVD
Sbjct: 398 SMEDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYYVD 577
Query: 613 YK 618
++
Sbjct: 578 FE 583
Score = 88.6 bits (187), Expect(3) = 2e-046
Identities = 29/52 (55%), Positives = 43/52 (82%)
Frame = +1 / +2
Query: 40 FQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTS 195
F++ W+LDPI+FGDYP MR+ L S+LPTF+ ++K +++K DFIG+NHYT+
Sbjct: 8 FEVDWFLDPIFFGDYPREMREMLSSNLPTFTSEEKRLLQSKADFIGVNHYTA 163
Score = 41.4 bits (84), Expect(3) = 2e-046
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1 / +2
Query: 217 NPDDVYFYKVQQMERVEKWSSGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVT 396
+P ++ Y+ + + G +IG A VP G+ ++ Y+ ++Y + +YVT
Sbjct: 188 SPCNIKSYEGNALVQAVGERDGVAIGRPTAFPGYYDVPEGMELIVKYVNQRYENAPVYVT 367
Query: 397 ENGMDDEDDQS 429
ENG D S
Sbjct: 368 ENGFSQFSDNS 400
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 105 bits (223), Expect(2) = 3e-044
Identities = 40/82 (48%), Positives = 56/82 (68%)
Frame = +1 / +2
Query: 271 WSSGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQSATIDQVL 450
+ +G +IG+RA S WL IVP G+ L+NY+ +YNSP IY+TENGMDD + + L
Sbjct: 98 FKNGRAIGDRANSIWLYIVPRGMRSLMNYVKNRYNSPPIYITENGMDDSNSPFIALKDAL 277
Query: 451 NDTKRVGYFNGYLNSVAQAIKD 516
DTKR+ Y N YL ++A +IK+
Sbjct: 278 KDTKRIKYHNDYLTNLAASIKE 343
Score = 94.1 bits (199), Expect(2) = 3e-044
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = +1 / +2
Query: 490 NSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKDGLSRHPKASALWFSRL 669
N A +DG DVRGYFAWS LDN+EWA GY+ RFG+ +VDY D L R+PK+S F L
Sbjct: 320 NLAASIKEDGCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYNDKLKRYPKSSVQXFKSL 499
Query: 670 L 672
L
Sbjct: 500 L 502
>gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L05 5', mRNA sequence
Length = 616
Score = 125 bits (268), Expect(2) = 4e-044
Identities = 46/125 (36%), Positives = 76/125 (60%)
Frame = +1 / +1
Query: 238 YKVQQMERVEKWSSGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDE 417
Y V + G+ +G +A +E+L + P G+H+L+ Y ++YN+P +YV ENG+D+
Sbjct: 211 YDADNRSNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEG 390
Query: 418 DDQSATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 597
++ S I + L D R+ Y +L + AIK +++GYF W+F+D FEW GY R G
Sbjct: 391 NNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRXG 570
Query: 598 IVYVD 612
++Y+D
Sbjct: 571 LIYID 585
Score = 73.0 bits (153), Expect(2) = 4e-044
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1 / +1
Query: 34 IDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTS 195
++F LGW++DPI GDYP SMR L + LP F+ +R DF+GLN+YT+
Sbjct: 1 VEFMLGWFMDPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLNYYTT 162
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 94.5 bits (200), Expect(4) = 6e-044
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / +1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 520 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSXKFGIVYVD 699
Query: 613 Y 615
+
Sbjct: 700 F 702
Score = 59.7 bits (124), Expect(4) = 6e-044
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 370 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 504
Score = 47.3 bits (97), Expect(4) = 6e-044
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1 / +1
Query: 58 LDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
+DP+ G YP+ M+ + LP F+ + + ++ D+IG+N YT+ L+
Sbjct: 148 VDPLINGHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLM 294
Score = 32.2 bits (64), Expect(4) = 6e-044
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / +1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 715 LDRHPKASAYWFRDLLR 765
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 92.7 bits (196), Expect(4) = 1e-042
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T ++ L+D RV ++ YL + +AI DGA+V GYFAWS LDNFEW GYT +FGIVYVD
Sbjct: 293 TREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVYVD 114
Query: 613 Y 615
+
Sbjct: 113 F 111
Score = 64.8 bits (135), Expect(4) = 1e-042
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G IG++A S WL IVP G++ +NYI +KYN+P I ++ENGMD
Sbjct: 443 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGMD 309
Score = 45.5 bits (93), Expect(4) = 1e-042
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = +1 / -1
Query: 76 GDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTSRLIA 207
G YP++M+ + LP+F+ + + ++ +D+IG+N YT+ +A
Sbjct: 647 GQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQYTATYMA 516
Score = 26.7 bits (52), Expect(4) = 1e-042
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L R+PK SA WF +L+
Sbjct: 104 LKRYPKDSAYWFKNMLQ 54
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 75.3 bits (158), Expect(3) = 6e-042
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +1 / +2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGY 582
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY
Sbjct: 602 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGY 751
Score = 74.4 bits (156), Expect(3) = 6e-042
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +1 / +2
Query: 4 TRDQIAAQRRIDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLN 183
T DQ AAQR DF +GW++DP+ G YP+ M+ + LP F+ + + + D+IG+N
Sbjct: 176 TEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGIN 355
Query: 184 HYTSRLI 204
YT+ L+
Sbjct: 356 QYTASLM 376
Score = 59.7 bits (124), Expect(3) = 6e-042
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 452 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 586
>gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 3', mRNA sequence
Length = 709
Score = 98.2 bits (208), Expect(4) = 2e-041
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +1 / -2
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I + DT RV Y+ Y+ + +AI DGA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 396 NVSITDGVQDTVRVRYYRDYITELKKAIDDGARVIGYFAWSLLDNFEWRLGYTARFGIVY 217
Query: 607 VDYK 618
VDYK
Sbjct: 216 VDYK 205
Score = 62.9 bits (131), Expect(4) = 2e-041
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1 / -2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQSAT 435
+G IG A S WL IVPWG++K + Y+ ++Y +P + + ENGMD + S T
Sbjct: 540 NGVPIGAHANSYWLYIVPWGINKAVTYVKERYGNPTMILAENGMDQPGNVSIT 382
Score = 35.4 bits (71), Expect(4) = 2e-041
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1 / -2
Query: 118 LPTFSEKDKEFIRNKIDFIGLNHYTS 195
LP FS + I+ ID++G+N YTS
Sbjct: 702 LPRFSADESTMIKGSIDYVGINQYTS 625
Score = 28.6 bits (56), Expect(4) = 2e-041
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -2
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 201 LKRYPKDSALWFKNML 154
>gb|BF254222.2|BF254222 HVSMEf0003F20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003F20f, mRNA sequence
Length = 556
Score = 98.2 bits (208), Expect(3) = 3e-040
Identities = 35/80 (43%), Positives = 56/80 (70%)
Frame = +1 / +3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQSATIDQVLND 456
+G+ IG++A S WL IVP + +L+NY+ +YN+P +Y+TENGMDD + + + L+D
Sbjct: 240 NGKPIGDKAHSIWLYIVPGSMKRLMNYVKDRYNTPTVYITENGMDDSNSPFIFLKKALHD 419
Query: 457 TKRVGYFNGYLNSVAQAIKD 516
TKR+ Y N YL ++A +I +
Sbjct: 420 TKRINYHNDYLTNLADSITE 479
Score = 64.8 bits (135), Expect(3) = 3e-040
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +1 / +3
Query: 55 YLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTS 195
+ DP +FGDYP +MR R+ LP F + + ++ +DF+G+NHYT+
Sbjct: 9 FADPFFFGDYPATMRSRVRERLPRFMTTEADLVKGSLDFVGINHYTT 149
Score = 40.9 bits (83), Expect(3) = 3e-040
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1 / +3
Query: 511 KDGADVRGYFAWSFLDNFEWAMG 579
+D DV YFAWS LDN+EW G
Sbjct: 477 EDSCDVPRYFAWSLLDNWEWTAG 545
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 95.0 bits (201), Expect(3) = 4e-040
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / +3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 393 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 572
Query: 613 Y 615
+
Sbjct: 573 F 575
Score = 59.7 bits (124), Expect(3) = 4e-040
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 243 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 377
Score = 48.7 bits (100), Expect(3) = 4e-040
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1 / +3
Query: 55 YLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
++DP+ G YP+ M+ + LP F+ + + ++ D+IG+N YT+ L+
Sbjct: 18 FVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLM 167
>gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11I05
5-PRIME, mRNA sequence
Length = 655
Score = 128 bits (275), Expect(2) = 4e-040
Identities = 47/125 (37%), Positives = 77/125 (61%)
Frame = +1 / +1
Query: 238 YKVQQMERVEKWSSGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDE 417
Y V + G+ +G +A +E+L + P G+H+L+ Y ++YN+P +YV ENG+D+
Sbjct: 193 YDADNRSNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEG 372
Query: 418 DDQSATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 597
++ S I + L D R+ Y +L + AIK +++GYF W+F+D FEW GY RFG
Sbjct: 373 NNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFG 552
Query: 598 IVYVD 612
++Y+D
Sbjct: 553 LIYID 567
Score = 56.1 bits (116), Expect(2) = 4e-040
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1 / +1
Query: 61 DPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTS 195
DPI GDYP SMR L + LP F+ +R DF+GLN+YT+
Sbjct: 10 DPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLNYYTT 144
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 92.7 bits (196), Expect(3) = 5e-040
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +1 / +1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T ++ L+D RV ++ YL + +AI DGA+V GYFAWS LDNFEW GYT +FGIVYVD
Sbjct: 394 TREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVYVD 573
Query: 613 Y 615
+
Sbjct: 574 F 576
Score = 64.8 bits (135), Expect(3) = 5e-040
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G IG++A S WL IVP G++ +NYI +KYN+P I ++ENGMD
Sbjct: 244 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGMD 378
Score = 45.5 bits (93), Expect(3) = 5e-040
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 76 GDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTSRLIA 207
G YP++M+ + LP+F+ + + ++ +D+IG+N YT+ +A
Sbjct: 40 GQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQYTATYMA 171
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 95.0 bits (201), Expect(4) = 2e-039
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 400 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Query: 613 Y 615
+
Sbjct: 220 F 218
Score = 59.7 bits (124), Expect(4) = 2e-039
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 416
Score = 32.2 bits (64), Expect(4) = 2e-039
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 205 LDRHPKASAYWFRDLLR 155
Score = 31.3 bits (62), Expect(4) = 2e-039
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1 / -2
Query: 118 LPTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
LP F+ + + + D+IG+N YT+ L+
Sbjct: 713 LPKFTPAEAKMVMGSADYIGINQYTASLM 627
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 95.0 bits (201), Expect(4) = 2e-039
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 396 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 217
Query: 613 Y 615
+
Sbjct: 216 F 214
Score = 59.7 bits (124), Expect(4) = 2e-039
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 546 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 412
Score = 32.2 bits (64), Expect(4) = 2e-039
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 201 LDRHPKASAYWFRDLLR 151
Score = 31.3 bits (62), Expect(4) = 2e-039
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1 / -2
Query: 118 LPTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
LP F+ + + + D+IG+N YT+ L+
Sbjct: 708 LPKFTPAEAKMVMGSADYIGINQYTASLM 622
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 95.0 bits (201), Expect(4) = 2e-039
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 613 Y 615
+
Sbjct: 199 F 197
Score = 59.7 bits (124), Expect(4) = 2e-039
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 395
Score = 32.2 bits (64), Expect(4) = 2e-039
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
Score = 31.3 bits (62), Expect(4) = 2e-039
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1 / -1
Query: 118 LPTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
LP F+ + + + D+IG+N YT+ L+
Sbjct: 691 LPKFTPAEAKMVMGSADYIGINQYTASLM 605
>gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_J07 5', mRNA sequence
Length = 642
Score = 92.3 bits (195), Expect(4) = 4e-039
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +3
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 303 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 482
Query: 607 VDY 615
VD+
Sbjct: 483 VDF 491
Score = 65.7 bits (137), Expect(4) = 4e-039
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 159 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 311
Score = 30.9 bits (61), Expect(4) = 4e-039
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1 / +3
Query: 127 FSEKDKEFIRNKIDFIGLNHYTS 195
FS + ++ ID++G+N YTS
Sbjct: 6 FSADESRMVKGSIDYVGINQYTS 74
Score = 28.6 bits (56), Expect(4) = 4e-039
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +3
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 498 LKRYPKDSALWFKNML 545
>gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. vulgare cDNA clone HF12O16
5-PRIME, mRNA sequence
Length = 615
Score = 92.3 bits (195), Expect(4) = 4e-039
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +1
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 313 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 492
Query: 607 VDY 615
VD+
Sbjct: 493 VDF 501
Score = 65.7 bits (137), Expect(4) = 4e-039
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 169 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 321
Score = 30.9 bits (61), Expect(4) = 4e-039
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1 / +1
Query: 127 FSEKDKEFIRNKIDFIGLNHYTS 195
FS + ++ ID++G+N YTS
Sbjct: 16 FSADESRMVKGSIDYVGINQYTS 84
Score = 28.6 bits (56), Expect(4) = 4e-039
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +1
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 508 LKRYPKDSALWFKNML 555
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 95.0 bits (201), Expect(4) = 8e-039
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 613 Y 615
+
Sbjct: 199 F 197
Score = 59.7 bits (124), Expect(4) = 8e-039
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 395
Score = 32.2 bits (64), Expect(4) = 8e-039
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
Score = 29.5 bits (58), Expect(4) = 8e-039
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1 / -1
Query: 121 PTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
P F+ + + + D+IG+N YT+ L+
Sbjct: 688 PKFTPAEAKMVMGSADYIGINQYTASLM 605
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 95.0 bits (201), Expect(4) = 2e-038
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / +1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 367 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 546
Query: 613 Y 615
+
Sbjct: 547 F 549
Score = 59.7 bits (124), Expect(4) = 2e-038
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 217 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 351
Score = 41.8 bits (85), Expect(4) = 2e-038
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1 / +1
Query: 76 GDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHYTSRLI 204
G YP+ M+ + LP F+ + + ++ D+IG+N YT+ L+
Sbjct: 13 GHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLM 141
Score = 21.7 bits (41), Expect(4) = 2e-038
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +1
Query: 625 LSRHPKASA 651
L RHPKASA
Sbjct: 562 LDRHPKASA 588
>gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016D19f, mRNA sequence
Length = 887
Score = 76.7 bits (161), Expect(3) = 5e-038
Identities = 26/66 (39%), Positives = 45/66 (68%)
Frame = +1 / +2
Query: 10 DQIAAQRRIDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHY 189
D+ AAQR DF +GW+LDP+ G YP++M+ + LP+F+ + + ++ +D+IG+N Y
Sbjct: 173 DKAAAQRARDFHVGWFLDPLLNGQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQY 352
Query: 190 TSRLIA 207
T+ +A
Sbjct: 353 TATYMA 370
Score = 64.8 bits (135), Expect(3) = 5e-038
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G IG++A S WL IVP G++ +NYI +KYN+P I ++ENGMD
Sbjct: 443 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGMD 577
Score = 54.7 bits (113), Expect(3) = 5e-038
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +1 / +2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDN 561
T + VL+D RV ++ YL + +AI DGA+V GYF WS LDN
Sbjct: 593 TREGVLHDASRVEFYKTYLAELKKAIDDGANVVGYFGWSLLDN 721
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 95.0 bits (201), Expect(4) = 2e-037
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 378 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 199
Query: 613 Y 615
+
Sbjct: 198 F 196
Score = 59.7 bits (124), Expect(4) = 2e-037
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 528 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 394
Score = 32.2 bits (64), Expect(4) = 2e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 183 LDRHPKASAYWFRDLLR 133
Score = 24.4 bits (47), Expect(4) = 2e-037
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1 / -1
Query: 139 DKEFIRNKIDFIGLNHYTSRLI 204
+ + + D+IG+N YT+ L+
Sbjct: 670 EAKMVMGSADYIGINQYTASLM 605
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 95.0 bits (201), Expect(4) = 5e-037
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 405 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 226
Query: 613 Y 615
+
Sbjct: 225 F 223
Score = 59.7 bits (124), Expect(4) = 5e-037
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 555 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 421
Score = 32.2 bits (64), Expect(4) = 5e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 210 LDRHPKASAYWFRDLLR 160
Score = 23.5 bits (45), Expect(4) = 5e-037
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1 / -1
Query: 151 IRNKIDFIGLNHYTSRLI 204
+ D+IG+N YT+ L+
Sbjct: 684 VMGSADYIGINQYTASLM 631
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 95.0 bits (201), Expect(4) = 5e-037
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 391 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 212
Query: 613 Y 615
+
Sbjct: 211 F 209
Score = 59.7 bits (124), Expect(4) = 5e-037
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 541 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 407
Score = 32.2 bits (64), Expect(4) = 5e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 196 LDRHPKASAYWFRDLLR 146
Score = 23.5 bits (45), Expect(4) = 5e-037
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1 / -3
Query: 151 IRNKIDFIGLNHYTSRLI 204
+ D+IG+N YT+ L+
Sbjct: 671 VMGSADYIGINQYTASLM 618
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 95.0 bits (201), Expect(4) = 5e-037
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 374 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 195
Query: 613 Y 615
+
Sbjct: 194 F 192
Score = 59.7 bits (124), Expect(4) = 5e-037
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 524 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 390
Score = 32.2 bits (64), Expect(4) = 5e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 179 LDRHPKASAYWFRDLLR 129
Score = 23.5 bits (45), Expect(4) = 5e-037
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1 / -1
Query: 151 IRNKIDFIGLNHYTSRLI 204
+ D+IG+N YT+ L+
Sbjct: 653 VMGSADYIGINQYTASLM 600
>gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF04E16
5-PRIME, mRNA sequence
Length = 590
Score = 92.3 bits (195), Expect(4) = 5e-037
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +2
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 269 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 448
Query: 607 VDY 615
VD+
Sbjct: 449 VDF 457
Score = 65.7 bits (137), Expect(4) = 5e-037
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 125 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 277
Score = 28.6 bits (56), Expect(4) = 5e-037
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +2
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 464 LKRYPKDSALWFKNML 511
Score = 24.0 bits (46), Expect(4) = 5e-037
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 163 IDFIGLNHYTS 195
ID++G+N YTS
Sbjct: 8 IDYVGINQYTS 40
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 95.0 bits (201), Expect(4) = 6e-037
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 410 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 231
Query: 613 Y 615
+
Sbjct: 230 F 228
Score = 59.7 bits (124), Expect(4) = 6e-037
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 560 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 426
Score = 32.2 bits (64), Expect(4) = 6e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 215 LDRHPKASAYWFRDLLR 165
Score = 23.1 bits (44), Expect(4) = 6e-037
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1 / -3
Query: 166 DFIGLNHYTSRLI 204
D+IG+N YT+ L+
Sbjct: 674 DYIGINQYTASLM 636
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 74.4 bits (156), Expect(4) = 1e-036
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +1 / +1
Query: 4 TRDQIAAQRRIDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLN 183
T DQ AAQR DF +GW++DP+ G YP+ M+ + LP F+ + + + D+IG+N
Sbjct: 7 TEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGIN 186
Query: 184 HYTSRLI 204
YT+ L+
Sbjct: 187 QYTASLM 207
Score = 59.7 bits (124), Expect(4) = 1e-036
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 283 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 417
Score = 51.0 bits (105), Expect(4) = 1e-036
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 538 FAWSFLDNFEWAMGYTKRFGIVYVDYKD 621
FA S LDNFEW GY+ +FGIVYVD+ +
Sbjct: 539 FAGSLLDNFEWMAGYSSKFGIVYVDFNN 622
Score = 28.6 bits (56), Expect(4) = 1e-036
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 631 RHPKASALWFSRLL 672
RHPKASA WF + L
Sbjct: 636 RHPKASAYWFKKPL 677
>gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45F22
5-PRIME, mRNA sequence
Length = 450
Score = 99.1 bits (210), Expect(2) = 3e-036
Identities = 35/78 (44%), Positives = 55/78 (70%)
Frame = +1 / +2
Query: 280 GESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQSATIDQVLNDT 459
G+ IGE AAS WL IVPWG+ L+ ++ KY +P +++TENGMDD + + + ++ VL D
Sbjct: 89 GKRIGETAASSWLHIVPWGMFSLMKHVKDKYGNPPVFITENGMDDANSRFSKLETVLQDN 268
Query: 460 KRVGYFNGYLNSVAQAIK 513
KR+ Y N Y++++ AI+
Sbjct: 269 KRIQYHNDYMSNLLDAIR 322
Score = 73.0 bits (153), Expect(2) = 3e-036
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +2
Query: 511 KDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKDGLSR 633
K+G ++RGYF WS LDN+EW GYT RFG+ Y+DY + L+R
Sbjct: 323 KEGCNIRGYFVWSLLDNWEWNSGYTVRFGLYYIDYDNNLTR 445
>gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K11f, mRNA sequence
Length = 503
Score = 92.3 bits (195), Expect(3) = 2e-035
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +1
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 211 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 390
Query: 607 VDY 615
VD+
Sbjct: 391 VDF 399
Score = 65.7 bits (137), Expect(3) = 2e-035
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 67 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 219
Score = 29.5 bits (58), Expect(3) = 2e-035
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1 / +1
Query: 625 LSRHPKASALWFSRLLKGEAAE 690
L R+PK SALWF +L + E
Sbjct: 406 LKRYPKDSALWFKNMLSEKKRE 471
>gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017P19f, mRNA sequence
Length = 888
Score = 85.8 bits (181), Expect(2) = 2e-035
Identities = 38/114 (33%), Positives = 65/114 (57%)
Frame = +1 / +2
Query: 271 WSSGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQSATIDQVL 450
+ +G IG A S + P GL +LL YI + Y + IY+TE G D+ ++ + I + L
Sbjct: 545 YRNGVPIGPPAFSPVFLNYPPGLRELLLYIRRIYGNRPIYITEXGTDEANNSTIPIKEAL 724
Query: 451 NDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
D R+ + +L + +AI++G +V GY W+F D+FE+ G+ R ++ +D
Sbjct: 725 KDDTRIFFHVNHLKFLHKAIQEGVNVEGYITWTFPDDFEFGDGFKDRVRLI*LD 886
Score = 83.5 bits (176), Expect(2) = 2e-035
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = +1 / +2
Query: 10 DQIAAQRRIDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFIRNKIDFIGLNHY 189
D+ A +R +DF LGW++ P+ FG+YP +MR+ +G LP F+++ E ++ DF+GLN+Y
Sbjct: 278 DRHAVKRSLDFMLGWFMHPVAFGEYPATMRRLVGRRLPEFTKEQSEMLKGSYDFLGLNYY 457
Query: 190 TS 195
TS
Sbjct: 458 TS 463
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 400 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Query: 613 Y 615
+
Sbjct: 220 F 218
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 416
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 205 LDRHPKASAYWFRDLLR 155
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 613 Y 615
+
Sbjct: 199 F 197
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 395
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 399 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 220
Query: 613 Y 615
+
Sbjct: 219 F 217
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 549 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 415
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 204 LDRHPKASAYWFRDLLR 154
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 405 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 226
Query: 613 Y 615
+
Sbjct: 225 F 223
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 555 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 421
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 210 LDRHPKASAYWFRDLLR 160
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 397 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 218
Query: 613 Y 615
+
Sbjct: 217 F 215
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 547 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 413
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 202 LDRHPKASAYWFRDLLR 152
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / +3
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 186 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 365
Query: 613 Y 615
+
Sbjct: 366 F 368
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 36 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 170
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / +3
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 381 LDRHPKASAYWFRDLLR 431
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 400 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Query: 613 Y 615
+
Sbjct: 220 F 218
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / -1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 416
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 205 LDRHPKASAYWFRDLLR 155
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / +2
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 167 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 346
Query: 613 Y 615
+
Sbjct: 347 F 349
Score = 59.7 bits (124), Expect(3) = 3e-035
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +1 / +2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G+ IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 17 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 151
Score = 32.2 bits (64), Expect(3) = 3e-035
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / +2
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 362 LDRHPKASAYWFRDLLR 412
>gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. vulgare cDNA clone HB09P08
5-PRIME, mRNA sequence
Length = 654
Score = 148 bits (318), Expect = 4e-035
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 499 AQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKDGLSRHPKASALWFSRLLKG 678
AQAIKDGADVRGYFAWSFLDNFEWAMG+TKRFGIVYVDYK+GLSRHPKASA+WFSR L G
Sbjct: 2 AQAIKDGADVRGYFAWSFLDNFEWAMGFTKRFGIVYVDYKNGLSRHPKASAMWFSRFLNG 181
Query: 679 EAAEN 693
EA ++
Sbjct: 182 EAPDS 196
Score = 116 bits (247), Expect = 2e-025
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = -1 / -1
Query: 671 RRRENQRADALGCLESPSL*ST*TMPNLLV*PIAHSKLSRNDHAKYPRTSAPSLIACA 498
R+REN ADALGC ESP L*ST*T+PNLLV PIAHSKLSRNDHAKYPRTSAPS IACA
Sbjct: 174 RKRENHMADALGCRESPFL*ST*TIPNLLVNPIAHSKLSRNDHAKYPRTSAPSFIACA 1
>gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. vulgare cDNA clone HB07P08
5-PRIME, mRNA sequence
Length = 454
Score = 148 bits (318), Expect = 4e-035
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = +1 / +2
Query: 499 AQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKDGLSRHPKASALWFSRLLKG 678
AQAIKDGADVRGYFAWSFLDNFEWAMG+TKRFGIVYVDYK+GLSRHPKASA+WFSR L G
Sbjct: 2 AQAIKDGADVRGYFAWSFLDNFEWAMGFTKRFGIVYVDYKNGLSRHPKASAMWFSRFLNG 181
Query: 679 EAAEN 693
EA ++
Sbjct: 182 EAPDS 196
Score = 116 bits (247), Expect = 2e-025
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = -1 / -2
Query: 671 RRRENQRADALGCLESPSL*ST*TMPNLLV*PIAHSKLSRNDHAKYPRTSAPSLIACA 498
R+REN ADALGC ESP L*ST*T+PNLLV PIAHSKLSRNDHAKYPRTSAPS IACA
Sbjct: 174 RKRENHMADALGCRESPFL*ST*TIPNLLVNPIAHSKLSRNDHAKYPRTSAPSFIACA 1
>gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B16
5-PRIME, mRNA sequence
Length = 611
Score = 92.3 bits (195), Expect(3) = 4e-035
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +1
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 187 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 366
Query: 607 VDY 615
VD+
Sbjct: 367 VDF 375
Score = 65.7 bits (137), Expect(3) = 4e-035
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 43 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 195
Score = 28.6 bits (56), Expect(3) = 4e-035
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +1
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 382 LKRYPKDSALWFKNML 429
>gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025H09f, mRNA sequence
Length = 565
Score = 92.3 bits (195), Expect(3) = 4e-035
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +1
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 196 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 375
Query: 607 VDY 615
VD+
Sbjct: 376 VDF 384
Score = 65.7 bits (137), Expect(3) = 4e-035
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 52 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 204
Score = 28.6 bits (56), Expect(3) = 4e-035
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +1
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 391 LKRYPKDSALWFKNML 438
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 95.0 bits (201), Expect(3) = 2e-034
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 420 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 241
Query: 613 Y 615
+
Sbjct: 240 F 238
Score = 56.5 bits (117), Expect(3) = 2e-034
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1 / -1
Query: 289 IGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 558 IGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 436
Score = 32.2 bits (64), Expect(3) = 2e-034
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 225 LDRHPKASAYWFRDLLR 175
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 95.0 bits (201), Expect(3) = 2e-034
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = +1 / -1
Query: 433 TIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 612
T DQ L DT RV ++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 613 Y 615
+
Sbjct: 199 F 197
Score = 56.5 bits (117), Expect(3) = 2e-034
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1 / -1
Query: 289 IGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
IG +A S WL IVP G++ ++Y+ +KY +P I +TENGMD
Sbjct: 517 IGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMD 395
Score = 32.2 bits (64), Expect(3) = 2e-034
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLLK 675
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
>gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006L16f, mRNA sequence
Length = 833
Score = 92.3 bits (195), Expect(3) = 4e-034
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / -3
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 594 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 415
Query: 607 VDY 615
VD+
Sbjct: 414 VDF 406
Score = 62.0 bits (129), Expect(3) = 4e-034
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +1 / -3
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+W IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 738 NGVPIGLRANSDWFYIVPWGMNKAVTYVKERYGNPPMILSENGMDQPGNVS 586
Score = 28.6 bits (56), Expect(3) = 4e-034
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -3
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 399 LKRYPKDSALWFKNML 352
>gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. vulgare cDNA clone HF01M24
3-PRIME, mRNA sequence
Length = 681
Score = 92.3 bits (195), Expect(3) = 4e-034
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / -1
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 552 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 373
Query: 607 VDY 615
VD+
Sbjct: 372 VDF 364
Score = 62.0 bits (129), Expect(3) = 4e-034
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +1 / -1
Query: 292 GERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
G RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 681 GPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 544
Score = 28.6 bits (56), Expect(3) = 4e-034
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 625 LSRHPKASALWFSRLL 672
L R+PK SALWF +L
Sbjct: 357 LKRYPKDSALWFKNML 310
>gb|BI958216.1|BI958216 HVSMEn0013O15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013O15f, mRNA sequence
Length = 648
Score = 96.8 bits (205), Expect(3) = 4e-034
Identities = 35/100 (35%), Positives = 59/100 (59%)
Frame = +1 / +3
Query: 280 GESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQSATIDQVLNDT 459
G IG++ + + VP G+ K++ Y ++YN+ Y+T+NG + + T DT
Sbjct: 327 GVLIGKQTGAPFFYDVPHGMEKVVMYYKQRYNNTATYITKNGYAQASNSNMTAKDFTGDT 506
Query: 460 KRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMG 579
+R+ Y +GYL + AI+ G +RGYF W+ L++FEW +G
Sbjct: 507 ERINYISGYLTYLPSAIRKGT*LRGYFVWALLNDFEWTLG 626
Score = 54.2 bits (112), Expect(3) = 4e-034
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1 / +3
Query: 34 IDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKE 147
I F + W+LDPI GDYP MR+ LG LP F+ K K+
Sbjct: 75 ISFNVPWFLDPIILGDYPAEMRKILGPTLPEFTSKQKK 188
Score = 31.8 bits (63), Expect(3) = 4e-034
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1 / +3
Query: 130 SEKDKEFIRNKIDFIGLNHYTS 195
S++ K+ K+DFIGLNHY++
Sbjct: 174 SKQKKKLHATKLDFIGLNHYST 239
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 96.8 bits (205), Expect(3) = 4e-034
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +1 / +2
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
S T+ L DT R+ YF+ YL+ + +AI DGA V GYFAWS LDNFEW MG+T +FG+VY
Sbjct: 158 SDTLPHALYDTFRIDYFDQYLHELKRAITDGARVTGYFAWSLLDNFEWRMGFTSKFGLVY 337
Query: 607 VD 612
VD
Sbjct: 338 VD 343
Score = 59.3 bits (123), Expect(3) = 4e-034
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1 / +2
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMD 411
+G IG++A S+WL +VPWG +K + ++ K+ PVI + ENG+D
Sbjct: 14 NGVPIGKQAFSKWLYVVPWGFYKAVMHVKNKFRDPVILIGENGID 148
Score = 26.7 bits (52), Expect(3) = 4e-034
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1 / +2
Query: 616 KDGLSRHPKASALWFSRLLKGE 681
++ +R+PK S WF +++K E
Sbjct: 344 RNTFTRYPKDSTRWFRKVIKSE 409
>gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080E16f, mRNA sequence
Length = 713
Score = 88.1 bits (186), Expect(3) = 8e-034
Identities = 33/61 (54%), Positives = 44/61 (72%)
Frame = +1 / +2
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 137 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 316
Query: 607 V 609
V
Sbjct: 317 V 319
Score = 63.8 bits (133), Expect(3) = 8e-034
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +1 / +2
Query: 289 IGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 5 IGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 145
Score = 29.9 bits (59), Expect(3) = 8e-034
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1 / +2
Query: 613 YKDGLSRHPKASALWFSRLL 672
Y + L R+PK SALWF +L
Sbjct: 320 YFNTLKRYPKDSALWFKNML 379
>gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I038 5-PRIME, mRNA sequence
Length = 655
Score = 92.3 bits (195), Expect(3) = 3e-033
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +1 / +1
Query: 427 SATIDQVLNDTKRVGYFNGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVY 606
+ +I ++DT R+ Y+ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVY
Sbjct: 238 NVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVY 417
Query: 607 VDY 615
VD+
Sbjct: 418 VDF 426
Score = 65.7 bits (137), Expect(3) = 3e-033
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 277 SGESIGERAASEWLVIVPWGLHKLLNYIVKKYNSPVIYVTENGMDDEDDQS 429
+G IG RA S+WL IVPWG++K + Y+ ++Y +P + ++ENGMD + S
Sbjct: 94 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 246
Score = 22.1 bits (42), Expect(3) = 3e-033
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 637 PKASALWFSRLL 672
P+ SALWF +L
Sbjct: 446 PRDSALWFKNML 481
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 360,190,653
Number of Sequences: 312970
Number of extensions: 5033019
Number of successful extensions: 39046
Number of sequences better than 1.0e-020: 152
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9810171187
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)