TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.2
(1086 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 162 8e-065
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 160 2e-062
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 159 3e-062
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 219 3e-060
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 152 2e-059
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 227 6e-059
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 169 3e-058
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 202 9e-058
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 100 3e-056
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 129 1e-055
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 202 4e-055
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 162 1e-054
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 162 1e-054
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 160 2e-053
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 131 4e-053
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 154 4e-052
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 143 2e-051
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 134 3e-051
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 134 3e-051
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 120 2e-050
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 147 6e-050
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 155 8e-050
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 121 2e-049
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 164 4e-049
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 134 1e-048
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 193 1e-048
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 160 8e-047
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 94 2e-046
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 183 1e-045
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 138 2e-045
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 180 1e-044
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 131 9e-044
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 167 1e-043
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 147 7e-042
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 100 5e-041
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 130 2e-040
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 100 1e-037
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 108 3e-036
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 150 1e-035
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 150 1e-035
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 149 3e-035
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 100 5e-035
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 100 3e-033
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 111 5e-033
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 141 6e-033
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 92 3e-032
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 138 7e-032
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 107 3e-031
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 105 1e-029
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 75 2e-028
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 107 4e-028
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 121 6e-027
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 75 7e-027
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 92 5e-026
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 80 5e-026
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 114 8e-025
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 72 4e-024
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 111 5e-024
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 90 7e-024
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 110 2e-023
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 64 3e-023
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 107 1e-022
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 96 6e-022
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 100 1e-021
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 104 1e-021
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 102 4e-021
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 162 bits (349), Expect(3) = 8e-065
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 192 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 371
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 372 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 479
Score = 101 bits (215), Expect(3) = 1e-030
Identities = 53/107 (49%), Positives = 60/107 (56%)
Frame = -3 / -3
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 475 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 296
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLST 353
SK +RGGLH PP S LGG R VAV + P LS+
Sbjct: 295 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELPWHLSS 155
Score = 100 bits (212), Expect(2) = 8e-022
Identities = 50/89 (56%), Positives = 55/89 (61%)
Frame = -2 / -2
Query: 674 PLHRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERG 495
PL VAGA +VG +H VEV V DG P ALL HP VG+GHDAG + DLE G
Sbjct: 476 PLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTDLEVGG 297
Query: 494 HAEVEVLPRRVAPPAAVRGLLVVGRAQVG 408
VEV RRVAP A V G VVGRA+VG
Sbjct: 296 LCHVEVGARRVAPAAVVVGQRVVGRAKVG 210
Score = 93.2 bits (197), Expect(3) = 8e-065
Identities = 35/58 (60%), Positives = 40/58 (68%)
Frame = +3 / +3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDS 362
A TFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C S
Sbjct: 3 ARGTFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKCQGS 176
Score = 35.4 bits (71), Expect(3) = 1e-030
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -3
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 160 SS*HDPHAAPSLNSAVLSAAVFVP*P 83
Score = 35.0 bits (70), Expect(3) = 1e-030
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KV 197
PHAP +VPD S PP*KV
Sbjct: 61 PHAPPIVPDASPPP*KV 11
Score = 30.9 bits (61), Expect(3) = 8e-065
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQT 731
W M RNWGQ WQ+
Sbjct: 489 WQAMSRNWGQNWQS 530
Score = 24.0 bits (46), Expect(2) = 8e-022
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1 / -1
Query: 291 PPSARHTPARACPCTRTRPPWCRT 220
PP + P +RTR P CRT
Sbjct: 105 PPCSCRNPCCTGSRSRTRRPLCRT 34
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 160 bits (344), Expect(2) = 2e-062
Identities = 59/96 (61%), Positives = 76/96 (79%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR H D++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 325 SITITATNLCPPNYALPNDDGGWCNPPRAHCDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 504
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GGIR+TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 505 KGGIRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 612
Score = 104 bits (222), Expect(3) = 2e-032
Identities = 53/107 (49%), Positives = 61/107 (57%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 608 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 429
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLST 353
S+C+RGGLH PP S LGG R VAV + P LS+
Sbjct: 428 SAMSQCARGGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELPWHLSS 288
Score = 100 bits (212), Expect(2) = 2e-062
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +1
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 121 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 300
Query: 354 VDS 362
S
Sbjct: 301 QGS 309
Score = 37.7 bits (76), Expect(3) = 2e-032
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3 / -1
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VPD S PP*KVA A
Sbjct: 194 PHAPPIVPDASPPP*KVACA 135
Score = 35.4 bits (71), Expect(3) = 2e-032
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -1
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 293 SS*HDPHAAPSLNSAVLSAAVFVP*P 216
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 159 bits (342), Expect(2) = 3e-062
Identities = 57/95 (60%), Positives = 76/95 (80%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 348 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 527
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKG 674
+GG+R+TI G+ YFN+V +TNV GAGD+ +VS++G
Sbjct: 528 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIRG 632
Score = 101 bits (215), Expect(3) = 3e-033
Identities = 53/107 (49%), Positives = 60/107 (56%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 631 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 452
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLST 353
SK +RGGLH PP S LGG R VAV + P LS+
Sbjct: 451 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELPWHLSS 311
Score = 100 bits (212), Expect(2) = 3e-062
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 144 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 323
Query: 354 VDS 362
S
Sbjct: 324 QGS 332
Score = 97.3 bits (206), Expect(2) = 2e-022
Identities = 47/81 (58%), Positives = 53/81 (65%)
Frame = -2 / -3
Query: 650 VAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVLP 471
VAGA +VG +H V+V V DG P ALL HP VG+GHDAG + DLE G VEV
Sbjct: 608 VAGAGHVGHKHQVKVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTDLEVGGLCHVEVGA 429
Query: 470 RRVAPPAAVRGLLVVGRAQVG 408
RRVAP A V G VVGRA+VG
Sbjct: 428 RRVAPAAVVVGQRVVGRAKVG 366
Score = 79.4 bits (167), Expect(2) = 3e-021
Identities = 35/67 (52%), Positives = 44/67 (65%)
Frame = +2 / +2
Query: 410 RPVPAQRPAVRGQRRVVQPAAGALRPQHARVPPDRTGEGRHRAHLLPQGGVHEAGRHPVH 589
+P+PAQ A + +RR+VQPAA LR AR+PPDR RHRA LP+G + E GR VH
Sbjct: 368 QPLPAQLRAAQRRRRLVQPAARPLRHGRARLPPDRYLPRRHRARFLPEGALCEEGRDEVH 547
Query: 590 HHREQVL 610
H R +L
Sbjct: 548 HQRPLLL 568
Score = 43.7 bits (89), Expect(3) = 3e-033
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / -1
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VPD S PP*KVAWA
Sbjct: 217 PHAPPIVPDASPPP*KVAWA 158
Score = 42.8 bits (87), Expect(2) = 3e-021
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2 / +2
Query: 188 RPRDLLRRAGWVRHHGGRVRVQGHARAGVWRADGGREH 301
RPR LLRR VRH+G RVR++ + G+ GG EH
Sbjct: 158 RPRHLLRRRRRVRHNGRRVRLREPVQHGLRHEHGGAEH 271
Score = 35.4 bits (71), Expect(3) = 3e-033
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -1
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 316 SS*HDPHAAPSLNSAVLSAAVFVP*P 239
Score = 29.0 bits (57), Expect(2) = 2e-022
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = -2 / -3
Query: 311 EQHRAHGHRLHAIXXXXXXXXXXXXXXXXXXXXXAVEGRVGGFPR 177
EQ RA R+ A+ AVEG VGG PR
Sbjct: 281 EQRRAQRRRVRAVTRAVQVPVAARAAHCAGRVAAAVEGGVGGLPR 147
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 219 bits (472), Expect(2) = 3e-060
Identities = 82/153 (53%), Positives = 109/153 (71%)
Frame = +3 / +3
Query: 396 VVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQG 575
VVTAT+ CPPN +S+D+GGWCNPPR HFD+S P F +IA +AGIVP+SYRRVAC K+G
Sbjct: 129 VVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKG 308
Query: 576 GIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCES 755
GIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++ W + RNWGQ WQ+ L +
Sbjct: 309 GIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQG 488
Query: 756 LTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
L+FRV + + S + +P W FG T+ ++
Sbjct: 489 LSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 587
Score = 136 bits (291), Expect = 3e-031
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -3 / -1
Query: 772 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 593
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 505 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 326
Query: 592 MVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHR 413
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH PP S D LGG +
Sbjct: 325 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPPASDDSPKLGGQK 146
Query: 412 SVAVTT 395
VAVTT
Sbjct: 145 LVAVTT 128
Score = 132 bits (283), Expect = 3e-030
Identities = 73/146 (50%), Positives = 81/146 (55%)
Frame = -2 / -3
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRPLNALAPLHRHRR 654
AE P + + V VA H ER+ L E LP LPPVA P L HR
Sbjct: 566 AE*PAARDGVVGDHGLAVACRHAEREALPVEQRVALPVLPPVA*ERLPRRRARRLDGHRV 387
Query: 653 DVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVL 474
VAGA +VGD+H VEV V D PDAALL ARHPAVGDG +AG + D E G VEV
Sbjct: 386 HVAGATHVGDQHQVEVRVAIDREPDAALLLARHPAVGDGDNAGAVERDALEDGLGHVEVG 207
Query: 473 PRRVAPPAAVRGLLVVGRAQVGRRHH 396
RVAP A V L VGRA+VG HH
Sbjct: 206 AGRVAPAAGVGRLAEVGRAEVGGSHH 129
Score = 33.6 bits (67), Expect(2) = 3e-060
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 306 LFGDGAACGGCYEVRC 353
LF +G +CG C+EVRC
Sbjct: 27 LFNNGLSCGACFEVRC 74
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 152 bits (326), Expect(2) = 2e-059
Identities = 55/88 (62%), Positives = 70/88 (79%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 326 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 505
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDI 653
+GGIR+TI G+ YFN+V +TNV GAGD+
Sbjct: 506 KGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 101 bits (216), Expect(3) = 1e-031
Identities = 52/99 (52%), Positives = 58/99 (58%)
Frame = -3 / -3
Query: 649 SPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSR 470
SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG SKC+R
Sbjct: 585 SPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKCAR 406
Query: 469 GGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLST 353
GGLH PP S LGG R VAV + P LS+
Sbjct: 405 GGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELPWHLSS 289
Score = 98.2 bits (208), Expect(2) = 2e-059
Identities = 37/63 (58%), Positives = 44/63 (69%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG + SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 122 GSWQTAHATFYGGGEASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 301
Query: 354 VDS 362
S
Sbjct: 302 QGS 310
Score = 37.7 bits (76), Expect(3) = 1e-031
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VPD S PP*KVA A
Sbjct: 195 PHAPPIVPDASPPP*KVACA 136
Score = 35.4 bits (71), Expect(3) = 1e-031
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -3
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 294 SS*HDPHAAPSLNSAVLSAAVFVP*P 217
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 227 bits (491), Expect = 6e-059
Identities = 85/165 (51%), Positives = 117/165 (70%)
Frame = +3 / +3
Query: 186 PAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSP 365
PA ATFYGG D S T GACGY + GYGV + A+ST LF +GA+CG C+ + C S
Sbjct: 114 PAFATFYGGSDASDTMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCFTITCDASK 293
Query: 366 SGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPIS 545
+ ++ +TAT+ CPPN ++D+GGWCNPPR+HFD+S PA+ IA +AGIVP++
Sbjct: 294 TQSCKQGTSITITATNFCPPNYALASDNGGWCNPPRQHFDMSQPAWETIAIYQAGIVPVN 473
Query: 546 YRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
Y+RV C + GG+R+TI GN YF +VT+ NVGG+G ++ + +KGSK
Sbjct: 474 YKRVPCQRSGGMRFTINGNDYFELVTVANVGGSGVVSQMWIKGSK 608
Score = 92.3 bits (195), Expect(2) = 2e-028
Identities = 49/94 (52%), Positives = 58/94 (61%)
Frame = -2 / -1
Query: 683 ALAPLHRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLE 504
+L PL H A AA + RH ++V+VP DG P A A +P V DGH+AGL+ D
Sbjct: 611 SLGPLDPHLGHHAAAADICHRHKLKVVVPVDGEPHAPTPLAGNPLVVDGHNAGLVDGDGL 432
Query: 503 ERGHAEVEVLPRRVAPPAAVRGLLVVGRAQVGRR 402
RG VEVLPRRVAP A V G VVGRA+VG R
Sbjct: 431 PRGL*HVEVLPRRVAPSAVVAGQGVVGRAEVGGR 330
Score = 54.2 bits (112), Expect(2) = 2e-028
Identities = 27/59 (45%), Positives = 31/59 (52%)
Frame = -3 / -2
Query: 361 LSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAG 185
L++Q H P AP VL A TPYP YPHAP +V + S PP* VA AG
Sbjct: 289 LASQVMVKHMPHDAPLLKRAVLNAAELTPYPALYKFPYPHAPPIVSEASLPP*NVANAG 113
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 169 bits (363), Expect(2) = 3e-058
Identities = 62/131 (47%), Positives = 88/131 (67%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+ CPPN+ D+GGWCNPPR HFD++ PA+ +I + GI+P+ Y+RV C K
Sbjct: 187 TVTVTATNFCPPNNALPNDNGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPVMYQRVPCVK 366
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTC 749
+GG+R+ + G+ YFN+V ++NV AG I ++ VK S W M RNWG W + +LT
Sbjct: 367 RGGVRFKMNGHDYFNLVLVSNVAAAGSIQSMDVKCSDSEDWMPMARNWGANWHSLANLTG 546
Query: 750 ESLTFRVMTSD 782
+ L FR+ SD
Sbjct: 547 KMLAFRLTNSD 579
Score = 96.4 bits (204), Expect(2) = 4e-030
Identities = 52/131 (39%), Positives = 65/131 (49%)
Frame = -3 / -2
Query: 781 SLVITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYL 602
SL+++ S VR + C PQLR I + + T + PA TL+ T LK
Sbjct: 578 SLLVSLKASILPVRLASECQLAPQLRAIGIQSSESEHLTSMDWIEPAAATLLTSTRLK*S 399
Query: 601 FPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLG 422
P ++ PP F H TL G MP I+ AG SKC RGGLH PPLS LG
Sbjct: 398 *PFILNLTPPRFTHGTLWYMTGMMPPL*TPIFSQAGCAMSKCGRGGLHQPPLSLGRALLG 219
Query: 421 GHRSVAVTTSV 389
G + VAVT +V
Sbjct: 218 GQKFVAVTVTV 186
Score = 77.1 bits (162), Expect(2) = 3e-058
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = +3 / +1
Query: 210 GRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G D S T GACGY + ++GYG +T A+STVLF DGAACG CY++ C
Sbjct: 1 GADASDTMGGACGYGNLFSEGYGTRTAALSTVLFNDGAACGQCYKIAC 144
Score = 55.6 bits (115), Expect(2) = 4e-030
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = -3 / -2
Query: 412 SVAVTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPA 233
+V VT + L + *H PQAAPS N+TVL A V PYP + YPHAP
Sbjct: 203 AVTVTVTPGLQNNGSARLRSHAIL*HCPQAAPSLNNTVLRAAVRVPYPSEKRLPYPHAPP 24
Query: 232 VVPDPS 215
+V + S
Sbjct: 23 IVSEAS 6
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 202 bits (435), Expect(2) = 9e-058
Identities = 76/125 (60%), Positives = 96/125 (76%)
Frame = +3 / +2
Query: 396 VVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQG 575
VVTAT+ CPPN +S+D+GGWCNPPR HFD+S P F +IA +AGIVP+SYRRVAC K+G
Sbjct: 125 VVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKG 304
Query: 576 GIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCES 755
GIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++ W + RNWGQ WQ+ L +
Sbjct: 305 GIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQG 484
Query: 756 LTFRV 770
L+FRV
Sbjct: 485 LSFRV 499
Score = 136 bits (291), Expect = 3e-031
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -3 / -1
Query: 772 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 593
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 501 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 322
Query: 592 MVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHR 413
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH PP S D LGG +
Sbjct: 321 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPPASDDSPKLGGQK 142
Query: 412 SVAVTT 395
VAVTT
Sbjct: 141 LVAVTT 124
Score = 131 bits (280), Expect = 8e-030
Identities = 69/129 (53%), Positives = 75/129 (58%)
Frame = -2 / -3
Query: 782 VASHHPERQRLAGEVLPGLPHLPPVALHLRPLNALAPLHRHRRDVAGAAYVGDRHHVEVL 603
VA H ER+ L E LP LPPVA P L HR VAGA +VGD+H VEV
Sbjct: 511 VACRHAEREALPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVR 332
Query: 602 VPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVLPRRVAPPAAVRGLLVVG 423
V D PDAALL ARHPAVGDG +AG + D E G VEV RVAP A V L VG
Sbjct: 331 VAIDREPDAALLLARHPAVGDGDNAGAVERDALEDGLGHVEVGAGRVAPAAGVGRLAEVG 152
Query: 422 RAQVGRRHH 396
RA+VG HH
Sbjct: 151 RAEVGGSHH 125
Score = 42.3 bits (86), Expect(2) = 9e-058
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 285 TVAVSTVLFGDGAACGGCYEVRC 353
T A+ST LF +G +CG C+EVRC
Sbjct: 2 TAALSTALFNNGLSCGACFEVRC 70
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 100 bits (212), Expect(4) = 3e-056
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +1
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 46 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 225
Query: 354 VDS 362
S
Sbjct: 226 QGS 234
Score = 99.1 bits (210), Expect(4) = 3e-056
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +3 / +3
Query: 522 KAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEM 701
+AGIVP+SYRRV C K+GG+R+TI G+ YFN+V +TNV GAGD+ +V +KGSK
Sbjct: 384 RAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKGSKLRVGRPC 563
Query: 702 KRNWGQVWQT 731
GQ WQ+
Sbjct: 564 SATGGQNWQS 593
Score = 64.8 bits (135), Expect(4) = 3e-027
Identities = 29/52 (55%), Positives = 32/52 (61%)
Frame = -2 / -3
Query: 680 LAPLHRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAG 525
L PL VAGA +VG +H VEV V DG P ALL HP VG+GHDAG
Sbjct: 542 LGPLDXDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAG 387
Score = 49.2 bits (101), Expect(4) = 3e-056
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3 / +2
Query: 423 PNDQQSADSGGWCNPPREHFDLSMPAFLQI 512
P + + GWCNPPR HFD++ PA+LQI
Sbjct: 284 PTTRCPTTTSGWCNPPRAHFDMAEPAYLQI 373
Score = 43.7 bits (89), Expect(4) = 3e-027
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VPD S PP*KVAWA
Sbjct: 119 PHAPPIVPDASPPP*KVAWA 60
Score = 35.4 bits (71), Expect(4) = 3e-027
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -3
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 218 SS*HDPHAAPSLNSAVLSAAVFVP*P 141
Score = 33.6 bits (67), Expect(4) = 3e-027
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3 / -2
Query: 511 IWRNAGMLRSKCSRGGLHHP 452
IWR AG SK +RGGLH P
Sbjct: 372 IWR*AGSAMSKWARGGLHQP 313
Score = 27.6 bits (54), Expect(4) = 3e-056
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPN 428
++ +TAT+LCPPN
Sbjct: 250 SITITATNLCPPN 288
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 129 bits (276), Expect(2) = 1e-055
Identities = 47/74 (63%), Positives = 57/74 (77%)
Frame = +3 / +1
Query: 372 CKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYR 551
C P ++VVTAT+ CPPN +D GGWCNPPR HFDL+MP FL +AQ +AGIVP+ YR
Sbjct: 379 CLPGKPSIVVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHMAQYRAGIVPVCYR 558
Query: 552 RVACTKQGGIRYTI 593
RVAC K GG+R+TI
Sbjct: 559 RVACRKSGGVRFTI 600
Score = 108 bits (230), Expect(2) = 1e-055
Identities = 39/69 (56%), Positives = 49/69 (71%)
Frame = +3 / +1
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G +T G + AHATFYGG D SGT GACGY + +QGYGV A+ST LF +G +CG C
Sbjct: 160 GVYTGGDWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGAC 339
Query: 339 YEVRCVDSP 365
+E+RCV+ P
Sbjct: 340 FEIRCVNQP 366
Score = 90.4 bits (191), Expect(2) = 6e-034
Identities = 43/74 (58%), Positives = 46/74 (62%)
Frame = -3 / -2
Query: 592 MVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHR 413
MV R PP F HAT R*+ GTMPA A+WRN GM RSK RGGLH PP S LGG +
Sbjct: 599 MVNRTPPDFRHATRR*QTGTMPARYWAMWRNMGMARSKWGRGGLHQPPSSEGSA*LGGQK 420
Query: 412 SVAVTTSVAALGLH 371
VAVTT G H
Sbjct: 419 LVAVTTMDGFPGRH 378
Score = 74.4 bits (156), Expect(2) = 6e-034
Identities = 36/69 (52%), Positives = 40/69 (57%)
Frame = -3 / -2
Query: 364 GLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAG 185
G T R S H PQ PS NS VL+A + TPYP YPHAP +VP+ S PP*KVA A
Sbjct: 365 GWFTHRISKHAPQLCPSLNSAVLSAALFTPYPWLYRFPYPHAPPMVPEASLPP*KVACAL 186
Query: 184 FXGPAVNLP 158
P V P
Sbjct: 185 CQSPPVYTP 159
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 202 bits (435), Expect(2) = 4e-055
Identities = 76/125 (60%), Positives = 96/125 (76%)
Frame = +3 / +3
Query: 396 VVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQG 575
VVTAT+ CPPN +S+D+GGWCNPPR HFD+S P F +IA +AGIVP+SYRRVAC K+G
Sbjct: 108 VVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKG 287
Query: 576 GIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCES 755
GIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++ W + RNWGQ WQ+ L +
Sbjct: 288 GIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQG 467
Query: 756 LTFRV 770
L+FRV
Sbjct: 468 LSFRV 482
Score = 136 bits (291), Expect = 3e-031
Identities = 65/126 (51%), Positives = 76/126 (60%)
Frame = -3 / -3
Query: 772 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 593
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 484 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 305
Query: 592 MVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHR 413
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH PP S D LGG +
Sbjct: 304 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPPASDDSPKLGGQK 125
Query: 412 SVAVTT 395
VAVTT
Sbjct: 124 LVAVTT 107
Score = 127 bits (273), Expect = 8e-029
Identities = 67/125 (53%), Positives = 73/125 (58%)
Frame = -2 / -2
Query: 770 HPERQRLAGEVLPGLPHLPPVALHLRPLNALAPLHRHRRDVAGAAYVGDRHHVEVLVPGD 591
H ER+ L E LP LPPVA P L HR VAGA +VGD+H VEV V D
Sbjct: 482 HAEREALPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAID 303
Query: 590 GVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVLPRRVAPPAAVRGLLVVGRAQV 411
PDAALL ARHPAVGDG +AG + D E G VEV RVAP A V L VGRA+V
Sbjct: 302 REPDAALLLARHPAVGDGDNAGAVERDALEDGLGHVEVGAGRVAPAAGVGRLAEVGRAEV 123
Query: 410 GRRHH 396
G HH
Sbjct: 122 GGSHH 108
Score = 33.6 bits (67), Expect(2) = 4e-055
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 306 LFGDGAACGGCYEVRC 353
LF +G +CG C+EVRC
Sbjct: 6 LFNNGLSCGACFEVRC 53
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 162 bits (349), Expect(2) = 1e-054
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = +3 / -3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 718 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 539
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 538 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 431
Score = 100 bits (214), Expect(2) = 2e-024
Identities = 50/91 (54%), Positives = 55/91 (60%)
Frame = -3 / +3
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 435 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 614
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAV 401
SK +RGGLH PP S LGG R VAV
Sbjct: 615 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAV 707
Score = 71.2 bits (149), Expect(2) = 1e-054
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +3 / -3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 421 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 257
Score = 32.2 bits (64), Expect(2) = 2e-024
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3 / +3
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
V P Q AG V +R SL +TR RS+ +C PQLR ++ H
Sbjct: 273 VCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 422
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 162 bits (349), Expect(2) = 1e-054
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 49 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 228
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 229 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 336
Score = 103 bits (219), Expect(2) = 3e-025
Identities = 54/109 (49%), Positives = 61/109 (55%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 332 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 153
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQR 347
SK +RGGLH PP S LGG R VAV + P LS+ R
Sbjct: 152 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELPWHLSSPR 6
Score = 71.2 bits (149), Expect(2) = 1e-054
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 346 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 510
Score = 32.2 bits (64), Expect(2) = 3e-025
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3 / -2
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
V P Q AG V +R SL +TR RS+ +C PQLR ++ H
Sbjct: 494 VCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 345
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 160 bits (345), Expect(4) = 2e-053
Identities = 58/95 (61%), Positives = 76/95 (80%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 112 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 291
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKG 674
+GG+R+TI G+ YFN+V +TNV GAGD+ +VS+KG
Sbjct: 292 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKG 396
Score = 104 bits (221), Expect(2) = 2e-026
Identities = 54/107 (50%), Positives = 61/107 (57%)
Frame = -3 / -3
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 395 PFMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 216
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLST 353
SK +RGGLH PP S LGG R VAV + P LS+
Sbjct: 215 SAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELPWHLSS 75
Score = 56.5 bits (117), Expect(4) = 2e-053
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3 / +1
Query: 270 GYGVQTVAVSTVLFGDGAACGGCYEVRCVDS 362
GYG T A+ST LF DGAACG CYE++C S
Sbjct: 4 GYGTNTAALSTALFNDGAACGSCYELKCQGS 96
Score = 35.4 bits (71), Expect(2) = 2e-026
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -3
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 80 SS*HDPHAAPSLNSAVLSAAVFVP*P 3
Score = 25.8 bits (50), Expect(4) = 2e-053
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / +2
Query: 699 MKRNWGQVWQTGEDL 743
+ RNWGQ WQ+ L
Sbjct: 416 LSRNWGQNWQSNGGL 460
Score = 23.1 bits (44), Expect(4) = 2e-053
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3 / +1
Query: 744 TCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
T +F + +TS P+ W FG T+Q
Sbjct: 463 TARGCSFGSPLAKAEPSTSTTSAPSRWSFGQTFQ 564
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 131 bits (281), Expect(3) = 4e-053
Identities = 50/96 (52%), Positives = 71/96 (73%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN AD+GG CNPP HF L + AF +IA KAG++PI YRRV C +
Sbjct: 181 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 360
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R++++G +F V I+NVGGAGD+ + +KG+
Sbjct: 361 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSRKIKGT 468
Score = 78.0 bits (164), Expect(3) = 4e-053
Identities = 30/61 (49%), Positives = 37/61 (60%)
Frame = +3 / +1
Query: 216 DGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGCKPNAATL 395
D GACG+ D GYG+ TV +ST LF GAACGGCYEV+CV+ C P + +
Sbjct: 10 DPGDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGTSIV 189
Query: 396 V 398
V
Sbjct: 190 V 192
Score = 65.7 bits (137), Expect(2) = 2e-023
Identities = 38/84 (45%), Positives = 46/84 (54%)
Frame = -2 / -3
Query: 653 DVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVL 474
D+ A + D E +P D P AA +A AV DGHDAGL +L ER + EV+
Sbjct: 444 DITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHDAGLPERNLLERLDGQEEVV 265
Query: 473 PRRVAPPAAVRGLLVVGRAQVGRR 402
RVA A V G VVGRA+VG R
Sbjct: 264 VGRVADAAGVGGEAVVGRAEVGGR 193
Score = 63.8 bits (133), Expect(2) = 2e-023
Identities = 30/62 (48%), Positives = 35/62 (56%)
Frame = -3 / -1
Query: 421 GHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPH 242
G + + T++ G L ST TS* PPQAAP NS VL+ TV PYPC S PH
Sbjct: 215 GGQKLVAVTTMEVPGRQYLRSSTHLTS*QPPQAAPRSNSAVLSPTVAIPYPCFPRSPNPH 36
Query: 241 AP 236
AP
Sbjct: 35 AP 30
Score = 37.7 bits (76), Expect(3) = 4e-053
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLP 815
W M RNWGQ+W DLT + ++F + D T+ + +P
Sbjct: 478 WLYMGRNWGQIWVIIFDLTGQPVSFGLTLGDGATKTNNYRVP 603
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 154 bits (331), Expect(2) = 4e-052
Identities = 57/90 (63%), Positives = 71/90 (78%)
Frame = +3 / +2
Query: 408 TDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRY 587
T LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+
Sbjct: 5 TRLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRF 184
Query: 588 TITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 185 TINGHSYFNLVLVTNVAGAGDVQSVSIKGS 274
Score = 95.5 bits (202), Expect(2) = 7e-023
Identities = 48/87 (55%), Positives = 53/87 (60%)
Frame = -2 / -1
Query: 674 PLHRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERG 495
PL VAGA +VG +H VEV V DG P ALL HP VG+GHDAG + DLE G
Sbjct: 271 PLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTDLEVGG 92
Query: 494 HAEVEVLPRRVAPPAAVRGLLVVGRAQ 414
VEV RRVAP A V G VVGRA+
Sbjct: 91 LCHVEVGARRVAPAAVVVGQRVVGRAK 11
Score = 71.2 bits (149), Expect(2) = 4e-052
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 284 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 448
Score = 32.2 bits (64), Expect(2) = 7e-023
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3 / -2
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
V P Q AG V +R SL +TR RS+ +C PQLR ++ H
Sbjct: 432 VCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 283
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 143 bits (306), Expect(4) = 2e-051
Identities = 52/86 (60%), Positives = 68/86 (79%)
Frame = +3 / +1
Query: 420 PPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTITG 599
P + + D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G
Sbjct: 160 PAQLRAAEDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 339
Query: 600 NKYFNMVTITNVGGAGDIAAVSVKGS 677
+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 340 HSYFNLVLVTNVAGAGDVQSVSIKGS 417
Score = 93.2 bits (197), Expect(2) = 1e-023
Identities = 45/85 (52%), Positives = 51/85 (60%)
Frame = -3 / -3
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 413 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 234
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGG 419
SK +RGGLH PP S+ S G
Sbjct: 233 SAMSKWARGGLHQPPSSSAARSWAG 159
Score = 52.4 bits (108), Expect(4) = 2e-051
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +3 / +2
Query: 270 GYGVQTVAVSTVLFGDGAACGGCYEVRCVDS 362
G G T A+ST LF DGAACG CYE++C S
Sbjct: 23 GCGTNTAALSTALFNDGAACGSCYELKCQGS 115
Score = 36.8 bits (74), Expect(2) = 1e-023
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -2
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 99 SS*HDPHAAPSLNSAVLSAAVFVPQP 22
Score = 36.3 bits (73), Expect(4) = 2e-051
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLP 815
W M WG WQ+ DL +SL+F+V + R T + P
Sbjct: 427 WQAMFPQWGHNWQSNADLDGQSLSFQVTLTYRRDVTINNAAP 552
Score = 27.6 bits (54), Expect(4) = 2e-051
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPN 428
++ +TAT+LCPPN
Sbjct: 131 SITITATNLCPPN 169
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 134 bits (288), Expect(3) = 3e-051
Identities = 51/96 (53%), Positives = 72/96 (75%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN AD+GG CNPP HF L + AF +IA KAG++PI YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R++++G +F V I+NVGGAGD+ +V +KG+
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGT 350
Score = 88.1 bits (186), Expect(2) = 3e-023
Identities = 48/94 (51%), Positives = 53/94 (56%)
Frame = -3 / -2
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
+P T SPAPPTL+I T+ K LFP R PP H T R MG PAF AI+ NA
Sbjct: 349 VPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNA 170
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
M R K GGL PP SA LGG + VAVTT
Sbjct: 169 WMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTT 68
Score = 68.9 bits (144), Expect(3) = 3e-051
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W +M RNWGQ+W DLT + ++F + +SD T+++V+P DW+FG TY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 40.5 bits (82), Expect(2) = 3e-023
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -3 / -2
Query: 841 YVTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFIS 695
YV PN QS G T V + SL ++ + VRS +CH PQLR +S
Sbjct: 511 YVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMS 365
Score = 37.7 bits (76), Expect(3) = 3e-051
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 327 CGGCYEVRCVDSPSGCKPNAATLV 398
CGGCYEV+CV+ C P + +V
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIVV 74
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 134 bits (288), Expect(3) = 3e-051
Identities = 51/96 (53%), Positives = 72/96 (75%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN AD+GG CNPP HF L + AF +IA KAG++PI YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R++++G +F V I+NVGGAGD+ +V +KG+
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGT 350
Score = 88.1 bits (186), Expect(2) = 3e-023
Identities = 48/94 (51%), Positives = 53/94 (56%)
Frame = -3 / -1
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
+P T SPAPPTL+I T+ K LFP R PP H T R MG PAF AI+ NA
Sbjct: 349 VPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNA 170
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
M R K GGL PP SA LGG + VAVTT
Sbjct: 169 WMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTT 68
Score = 68.9 bits (144), Expect(3) = 3e-051
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W +M RNWGQ+W DLT + ++F + +SD T+++V+P DW+FG TY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 40.5 bits (82), Expect(2) = 3e-023
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -3 / -1
Query: 841 YVTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFIS 695
YV PN QS G T V + SL ++ + VRS +CH PQLR +S
Sbjct: 511 YVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMS 365
Score = 37.7 bits (76), Expect(3) = 3e-051
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 327 CGGCYEVRCVDSPSGCKPNAATLV 398
CGGCYEV+CV+ C P + +V
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIVV 74
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 120 bits (256), Expect(2) = 2e-050
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +T T+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYR+V C K
Sbjct: 374 SITITGTNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRKVPCVK 553
Query: 570 QGGIRYTITGNKY 608
+GG+R+TI G+ Y
Sbjct: 554 KGGMRFTINGHSY 592
Score = 100 bits (212), Expect(2) = 2e-050
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 170 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 349
Query: 354 VDS 362
S
Sbjct: 350 QGS 358
Score = 75.3 bits (158), Expect(3) = 1e-025
Identities = 39/82 (47%), Positives = 44/82 (53%)
Frame = -3 / -2
Query: 598 PVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGG 419
P+MV +PP F T R*E GTMPA IWR AG SK +RGGLH PP S LGG
Sbjct: 582 PLMVNLIPPFFTQGTFR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGG 403
Query: 418 HRSVAVTTSVAALGLHPLGLST 353
R V V + P LS+
Sbjct: 402 QRLVPVMVMLPGTHELPWHLSS 337
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VPD S PP*KVAWA
Sbjct: 243 PHAPPIVPDASPPP*KVAWA 184
Score = 35.4 bits (71), Expect(3) = 1e-025
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3 / -2
Query: 346 TS*HPPQAAPSPNSTVLTATVCTPYP 269
+S*H P AAPS NS VL+A V P P
Sbjct: 342 SS*HDPHAAPSLNSAVLSAAVFVP*P 265
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 147 bits (315), Expect(2) = 6e-050
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +3 / +3
Query: 420 PPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTITG 599
PPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K+GG+R+TI G
Sbjct: 3 PPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 182
Query: 600 NKYFNMVTITNVGGAGDIAAVSVKGS 677
+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 183 HSYFNLVLVTNVAGAGDVQSVSIKGS 260
Score = 94.1 bits (199), Expect(2) = 2e-022
Identities = 46/85 (54%), Positives = 51/85 (60%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +T SPAP TLV T LK +P+MV +PP F TLR*E GTMPA IWR AG
Sbjct: 256 PLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AG 77
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGG 419
SK +RGGLH PP S LGG
Sbjct: 76 SAMSKWARGGLHQPPSSLGSA*LGG 2
Score = 71.2 bits (149), Expect(2) = 6e-050
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 270 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 434
Score = 32.2 bits (64), Expect(2) = 2e-022
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3 / -1
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
V P Q AG V +R SL +TR RS+ +C PQLR ++ H
Sbjct: 418 VCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 269
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 155 bits (333), Expect(2) = 8e-050
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = +3 / +1
Query: 396 VVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQG 575
+VTAT+LCP N ++ + GGWCNPP+ HFDL+ P F +IAQ +AG+VP+ YRRVAC K G
Sbjct: 10 MVTATNLCPANYARANNDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTG 189
Query: 576 GIRYTITGNKYFNMVTITNVGGAGDIAAVSVK 671
GIR+TITG+ YFN+V ITNV GAGD+ +V VK
Sbjct: 190 GIRFTITGHSYFNLVLITNVAGAGDLMSVYVK 285
Score = 124 bits (265), Expect(2) = 5e-033
Identities = 57/91 (62%), Positives = 61/91 (67%)
Frame = -2 / -2
Query: 668 HRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHA 489
H HR VAGA VGD H VEV V GDG PDA L RHP+V DGHDAG L D E +
Sbjct: 282 HVHRHQVAGAGNVGDEHQVEVGVAGDGEPDATRLDTRHPSVLDGHDAGTGLGDPSEHRLS 103
Query: 488 EVEVLPRRVAPPAAVRGLLVVGRAQVGRRHH 396
EVE+ RRVAPPA V G VVGRA+VG RHH
Sbjct: 102 EVEMRLRRVAPPAVVVGTCVVGRAEVGGRHH 10
Score = 62.5 bits (130), Expect(2) = 8e-050
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W M NWG WQ G L + L+FRV TSD R TS +V P W FG T+
Sbjct: 301 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
Score = 37.3 bits (75), Expect(2) = 5e-033
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3 / -3
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
V P Q G T +V +R SLV+TR S + +P C PQL + H
Sbjct: 449 VWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSH 300
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 121 bits (258), Expect(2) = 2e-049
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HF ++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 212 SITITATNLCPPNYALPNDDGGWCNPPRAHFXMAEPAYLQIGIYRAGIVPVSYRRVPCVK 391
Query: 570 QGGIRYTITGNKYF 611
+GG+R+T+ G+ YF
Sbjct: 392 KGGMRFTMNGHAYF 433
Score = 95.9 bits (203), Expect(2) = 2e-049
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CY ++C
Sbjct: 8 GGWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLKC 187
Query: 354 VDS 362
S
Sbjct: 188 QGS 196
Score = 74.8 bits (157), Expect(3) = 1e-024
Identities = 41/79 (51%), Positives = 46/79 (58%)
Frame = -2 / -2
Query: 644 GAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVLPRR 465
G A + R +EV V P ALL HP VG+GHDAG + DLE G VEV RR
Sbjct: 466 GLATLVSRTTLEVGVAVHRKPHPALLHTGHPPVGNGHDAGPVDTDLEVGGLCHVEVGARR 287
Query: 464 VAPPAAVRGLLVVGRAQVG 408
VAP A V G VVGRA+VG
Sbjct: 286 VAPAAVVVGQRVVGRAKVG 230
Score = 43.7 bits (89), Expect(3) = 1e-024
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VPD S PP*KVAWA
Sbjct: 81 PHAPPIVPDASPPP*KVAWA 22
Score = 32.7 bits (65), Expect(3) = 1e-024
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -3 / -3
Query: 340 *HPPQAAPSPNSTVLTATVCTPYP 269
*H P AAPS NS VL+A V P P
Sbjct: 174 *HHPHAAPSLNSAVLSAAVFVP*P 103
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 164 bits (352), Expect(3) = 4e-049
Identities = 61/105 (58%), Positives = 80/105 (76%)
Frame = +3 / +3
Query: 366 SGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPIS 545
+G +++VTAT+ CPPN +D GGWCNPPR HFD++ PAFL IAQ +AGIVP+S
Sbjct: 363 AGSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 542
Query: 546 YRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
YRRV C K+GGIR+TI G+ YFN+V +TNV GAGD +V +KG++
Sbjct: 543 YRRVPCVKKGGIRFTINGHSYFNLVLVTNVXGAGDARSVFIKGTR 677
Score = 116 bits (248), Expect(2) = 2e-045
Identities = 54/89 (60%), Positives = 61/89 (68%)
Frame = -2 / -2
Query: 662 HRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEV 483
H VAGA +VG +H VEV V DG PDA LL ARHP+VGDG+DAG +L D+EE V
Sbjct: 659 HGARVAGAXHVGHQHQVEVGVAVDGEPDAPLLHARHPSVGDGYDAGAVLRDVEEGRLGHV 480
Query: 482 EVLPRRVAPPAAVRGLLVVGRAQVGRRHH 396
EV RRVAP A V G VVGRA+VG HH
Sbjct: 479 EVGARRVAPAAVVAGEAVVGRAEVGGGHH 393
Score = 113 bits (241), Expect = 2e-024
Identities = 53/93 (56%), Positives = 59/93 (63%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
+P +T SPAP TLV T LK +P+MV RMPP F H TL *E GTMPA CA+WR A
Sbjct: 673 VPLMNTERASPAPXTLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKA 494
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVT 398
G SK RGGLH PP S LGG + VAVT
Sbjct: 493 GSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVT 395
Score = 111 bits (237), Expect(2) = 4e-040
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE+RC
Sbjct: 177 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 356
Query: 354 VDSPSGCKPNAATLVVT 404
++ S C+P + + T
Sbjct: 357 DNAGSSCRPGSIMVTAT 407
Score = 86.8 bits (183), Expect(2) = 2e-045
Identities = 38/64 (59%), Positives = 43/64 (67%)
Frame = -3 / -3
Query: 379 GLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 200
G H L +QR+S*H P AAPS NS VL+A V PYP YPHAP +VP+ S PP*K
Sbjct: 382 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*K 203
Query: 199 VAWA 188
VAWA
Sbjct: 202 VAWA 191
Score = 73.9 bits (155), Expect(2) = 4e-040
Identities = 34/71 (47%), Positives = 42/71 (59%)
Frame = +2 / +2
Query: 398 GDGDRPVPAQRPAVRGQRRVVQPAAGALRPQHARVPPDRTGEGRHRAHLLPQGGVHEAGR 577
GD + +PAQ + +RR+VQPAA LR A +PP R RHR LL +G V E G
Sbjct: 395 GDRHQLLPAQLRPPQRRRRLVQPAAPPLRHGRAGLPPHRAVPRRHRTRLLQKGAVREEGG 574
Query: 578 HPVHHHREQVL 610
HPVHH R +L
Sbjct: 575 HPVHHQRPLLL 607
Score = 38.2 bits (77), Expect(3) = 4e-049
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3 / +3
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 782
R W M RNWG WQ+ L + L+F+V + D
Sbjct: 675 RTGWQAMSRNWGMNWQSNTFLGRQCLSFKVTSRD 776
Score = 31.8 bits (63), Expect(3) = 4e-049
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2 / +2
Query: 188 RPRDLLRRAGWVRHHGGRVRVQGHARAGVWRADGGREH 301
RP LLRR +RH G VRV+ + V GG EH
Sbjct: 191 RPCHLLRRRRRLRHDGRGVRVR*PVQHWVRHEHGGAEH 304
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 134 bits (288), Expect(3) = 1e-048
Identities = 51/96 (53%), Positives = 72/96 (75%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN AD+GG CNPP HF L + AF +IA KAG++PI YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R++++G +F V I+NVGGAGD+ +V +KG+
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGT 350
Score = 88.1 bits (186), Expect(2) = 3e-023
Identities = 48/94 (51%), Positives = 53/94 (56%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
+P T SPAPPTL+I T+ K LFP R PP H T R MG PAF AI+ NA
Sbjct: 349 VPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNA 170
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
M R K GGL PP SA LGG + VAVTT
Sbjct: 169 WMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTT 68
Score = 68.9 bits (144), Expect(3) = 1e-048
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W +M RNWGQ+W DLT + ++F + +SD T+++V+P DW+FG TY
Sbjct: 360 WLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTY 512
Score = 40.5 bits (82), Expect(2) = 3e-023
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -3 / -3
Query: 841 YVTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFIS 695
YV PN QS G T V + SL ++ + VRS +CH PQLR +S
Sbjct: 511 YVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMS 365
Score = 29.0 bits (57), Expect(3) = 1e-048
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3 / +3
Query: 327 CGGCYEVRCVDSPSGCKPNAATLV 398
CGG Y V+CV+ C P + +V
Sbjct: 3 CGG*YAVKCVEDLKYCLPGTSIVV 74
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 193 bits (416), Expect = 1e-048
Identities = 72/130 (55%), Positives = 94/130 (72%)
Frame = +3 / +2
Query: 411 DLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYT 590
+ CPPN +S+D+GGWCNPPR HFD+S P F +IA +AGIVP+SYRRVAC K+GGIR+T
Sbjct: 17 NFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFT 196
Query: 591 ITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRV 770
I G+ YFN+V +TNVGG GD+ AVSVK ++ W + RNWGQ WQ+ L + L+FRV
Sbjct: 197 INGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 376
Query: 771 MTSDHRKATS 800
+ + S
Sbjct: 377 TAGNGQSVVS 406
Score = 127 bits (271), Expect = 1e-028
Identities = 60/120 (50%), Positives = 71/120 (59%)
Frame = -3 / -2
Query: 772 ITRNVSDSQVRSSPVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPV 593
+TRN S+ +C CPQLR + H + TDTA SP PPTLV T LKY +P+
Sbjct: 378 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 199
Query: 592 MVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHR 413
+V MPP F HATLR*E GTMPA A+ G SK +RGGLH PP S D LGG +
Sbjct: 198 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPPASDDSPKLGGQK 19
Score = 125 bits (267), Expect = 5e-028
Identities = 67/125 (53%), Positives = 73/125 (58%)
Frame = -2 / -1
Query: 782 VASHHPERQRLAGEVLPGLPHLPPVALHLRPLNALAPLHRHRRDVAGAAYVGDRHHVEVL 603
VA H ER+ L E LP LPPVA P L HR VAGA +VGD+H VEV
Sbjct: 388 VACRHAEREALPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVR 209
Query: 602 VPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHAEVEVLPRRVAPPAAVRGLLVVG 423
V D PDAALL ARHPAVGDG +AG + D E G VEV RVAP A V L VG
Sbjct: 208 VAIDREPDAALLLARHPAVGDGDNAGAVERDALEDGLGHVEVGAGRVAPAAGVGRLAEVG 29
Query: 422 RAQVG 408
RA+VG
Sbjct: 28 RAEVG 14
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 160 bits (345), Expect(3) = 8e-047
Identities = 59/96 (61%), Positives = 76/96 (79%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AGIVP+SYRRV C K
Sbjct: 87 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 266
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V TNV GAGD+ +VS+KGS
Sbjct: 267 KGGMRFTINGHSYFNLVLXTNVAGAGDVQSVSIKGS 374
Score = 34.5 bits (69), Expect(3) = 8e-047
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 315 DGAACGGCYEVRCVDS 362
DGAACG CYE++C S
Sbjct: 24 DGAACGSCYELKCQGS 71
Score = 30.9 bits (61), Expect(3) = 8e-047
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQT 731
W M RNWGQ WQ+
Sbjct: 384 WQAMSRNWGQNWQS 425
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 93.6 bits (198), Expect(4) = 2e-046
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = +3 / +3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDS 362
AHATFYGG D SGT GAC Y++ + GYG T A+ST LF D AACG CYE++C S
Sbjct: 189 AHATFYGGGDASGTMGGACCYRNLYSTGYGTNTAALSTALFNDSAACGSCYELKCQGS 362
Score = 64.3 bits (134), Expect(4) = 2e-046
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3 / +1
Query: 444 DSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPI 542
D GGWCNPPR HFD++ PA+LQI +AGIVP+
Sbjct: 433 DHGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPV 531
Score = 59.3 bits (123), Expect(4) = 2e-046
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +3 / +2
Query: 537 PISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDI 653
P SYRR C K+GG+R+TI G+ YFN+ TNV GAG++
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNM 643
Score = 25.8 bits (50), Expect(4) = 2e-046
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPN 428
++ +T T+LCPPN
Sbjct: 378 SITITVTNLCPPN 416
>gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O14
5-PRIME, mRNA sequence
Length = 443
Score = 183 bits (395), Expect = 1e-045
Identities = 69/136 (50%), Positives = 95/136 (69%)
Frame = +3 / +2
Query: 195 ATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGC 374
ATFYGG + +GT GACGY + A GYG T A+ST LF DGAACG CY+V+C S
Sbjct: 32 ATFYGGSNAAGTMGGACGYGNLYATGYGTNTAALSTSLFNDGAACGECYQVQCDRGSSPN 211
Query: 375 KPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRR 554
T+ +TAT+LCP + + D+GGWCNPPR+H D++ PA+ +I +AGIVP+ ++R
Sbjct: 212 CKPGVTVTITATNLCPTDYSKPNDNGGWCNPPRKHLDMAQPAWERIGIYRAGIVPVLFQR 391
Query: 555 VACTKQGGIRYTITGN 602
V C++ GG+R+TI G+
Sbjct: 392 VPCSRSGGVRFTINGH 439
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 138 bits (297), Expect(2) = 2e-045
Identities = 51/76 (67%), Positives = 62/76 (81%)
Frame = +3 / +1
Query: 444 DSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVT 623
D GGWCNPP+ HFDL+ P F +IAQ +AG+VP+ YRRVAC K GGIR+TITG+ YFN+V
Sbjct: 10 DDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVL 189
Query: 624 ITNVGGAGDIAAVSVK 671
ITNV GAGD+ +V VK
Sbjct: 190 ITNVAGAGDLMSVYVK 237
Score = 99.1 bits (210), Expect(2) = 2e-025
Identities = 46/75 (61%), Positives = 49/75 (65%)
Frame = -2 / -3
Query: 668 HRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGHA 489
H HR VAGA VGD H VEV V GDG PDA L RHP+V DGHDAG L D E +
Sbjct: 234 HVHRHQVAGAGNVGDEHQVEVGVAGDGEPDATRLDTRHPSVLDGHDAGTGLGDPSEHRLS 55
Query: 488 EVEVLPRRVAPPAAV 444
EVE+ RRVAPPA V
Sbjct: 54 EVEMRLRRVAPPAVV 10
Score = 64.3 bits (134), Expect(2) = 2e-045
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M NWG WQ G L + L+FRV TSD R TS +V P W FG T+ S+
Sbjct: 253 WLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTFAGSQ 417
Score = 37.3 bits (75), Expect(2) = 2e-025
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3 / -1
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
V P Q G T +V +R SLV+TR S + +P C PQL + H
Sbjct: 401 VWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSH 252
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 180 bits (387), Expect = 1e-044
Identities = 71/136 (52%), Positives = 88/136 (64%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
A ATFYGG DGSGT GACGY + GYG+ A+ST LF DGA CG CY + C S
Sbjct: 163 ATATFYGGADGSGTMGGACGYGNLYGSGYGINNAALSTALFNDGAMCGACYIIYCDTGRS 342
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
+ V+AT+ CPPN +GGWCNPPR HFD+S PA+ IA +AGIVP+ Y
Sbjct: 343 KMCRPGTQITVSATNFCPPNWALPRTTGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMY 522
Query: 549 RRVACTKQGGIRYTIT 596
+RV+C K+ GIR+ I+
Sbjct: 523 KRVSCQKRDGIRFGIS 570
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 131 bits (281), Expect(2) = 9e-044
Identities = 48/90 (53%), Positives = 67/90 (74%)
Frame = +3 / -3
Query: 408 TDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRY 587
T+ CPPN +++GGWCNPPR HFD+S PA+ IA +AGIVP+ Y+RV+C K+ GIR+
Sbjct: 530 TNFCPPNWALPSNNGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRF 351
Query: 588 TITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
I+G YF +V +TNVGG+G + + +KGS
Sbjct: 350 GISGRDYFELVVVTNVGGSGVVVQMWIKGS 261
Score = 66.1 bits (138), Expect(2) = 9e-044
Identities = 26/57 (45%), Positives = 34/57 (59%)
Frame = +3 / -3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASKNF 860
W M RNWG WQ+ L + L+FRV D R+AT+ V P++W FG TY + NF
Sbjct: 251 WLAMSRNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYSSWINF 81
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 167 bits (359), Expect(2) = 1e-043
Identities = 62/105 (59%), Positives = 81/105 (77%)
Frame = +3 / +1
Query: 366 SGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPIS 545
+G +++VTAT+ CPPN +D GGWCNPPR HFD++ PAFL IAQ +AGIVP+S
Sbjct: 145 AGSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 324
Query: 546 YRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
YRRV C K+GGIR+TI G+ YFN+V +TNV GAGD +VS+KG++
Sbjct: 325 YRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTR 459
Score = 116 bits (249), Expect(2) = 3e-039
Identities = 55/92 (59%), Positives = 62/92 (67%)
Frame = -2 / -2
Query: 671 LHRHRRDVAGAAYVGDRHHVEVLVPGDGVPDAALLRARHPAVGDGHDAGLLLCDLEERGH 492
L H VAGA +VG +H VEV V DG PDA LL ARHP+VGDG+DAG +L D+EE
Sbjct: 450 LDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPLLHARHPSVGDGYDAGAVLRDVEEGRL 271
Query: 491 AEVEVLPRRVAPPAAVRGLLVVGRAQVGRRHH 396
VEV RRVAP A V G VVGRA+VG HH
Sbjct: 270 GHVEVGARRVAPAAVVAGEAVVGRAEVGGGHH 175
Score = 116 bits (247), Expect = 3e-025
Identities = 54/93 (58%), Positives = 59/93 (63%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
+P DT SPAP TLV T LK +P+MV RMPP F H TL *E GTMPA CA+WR A
Sbjct: 455 VPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKA 276
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVT 398
G SK RGGLH PP S LGG + VAVT
Sbjct: 275 GSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVT 177
Score = 85.8 bits (181), Expect(2) = 2e-032
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +3 / +1
Query: 225 GTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGCKPNAATLVVT 404
GT GACGY + + GYG T A+ST LF DGAACG CYE+RC ++ S C+P + + T
Sbjct: 10 GTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMVTAT 189
Score = 73.9 bits (155), Expect(2) = 2e-032
Identities = 34/71 (47%), Positives = 42/71 (59%)
Frame = +2 / +3
Query: 398 GDGDRPVPAQRPAVRGQRRVVQPAAGALRPQHARVPPDRTGEGRHRAHLLPQGGVHEAGR 577
GD + +PAQ + +RR+VQPAA LR A +PP R RHR LL +G V E G
Sbjct: 177 GDRHQLLPAQLRPPQRRRRLVQPAAPPLRHGRAGLPPHRAVPRRHRTRLLQKGAVREEGG 356
Query: 578 HPVHHHREQVL 610
HPVHH R +L
Sbjct: 357 HPVHHQRPLLL 389
Score = 65.7 bits (137), Expect(2) = 3e-039
Identities = 29/52 (55%), Positives = 33/52 (63%)
Frame = -3 / -3
Query: 379 GLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
G H L +QR+S*H P AAPS NS VL+A V PYP YPHAP +VP
Sbjct: 164 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVP 9
Score = 29.9 bits (59), Expect(2) = 1e-043
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3 / +1
Query: 681 RVKWTEMKRNWGQVWQT 731
R W M RNWG WQ+
Sbjct: 457 RTGWQAMSRNWGMNWQS 507
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 147 bits (315), Expect(2) = 3e-038
Identities = 55/95 (57%), Positives = 70/95 (73%)
Frame = +3 / +3
Query: 366 SGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPIS 545
+G +++VTAT+ CPPN +D GGWCNPPR H D++ PAFL IAQ +AGIVP+S
Sbjct: 363 AGSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHLDMAEPAFLHIAQYRAGIVPLS 542
Query: 546 YRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGD 650
YRRV C K+GGIR+TI G+ Y N+ +TNV GAGD
Sbjct: 543 YRRVPCVKKGGIRFTINGHSYLNLGLVTNVAGAGD 647
Score = 111 bits (237), Expect(3) = 5e-041
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE+RC
Sbjct: 177 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 356
Query: 354 VDSPSGCKPNAATLVVT 404
++ S C+P + + T
Sbjct: 357 DNAGSSCRPGSIMVTAT 407
Score = 104 bits (222), Expect(2) = 7e-042
Identities = 49/84 (58%), Positives = 53/84 (63%)
Frame = -3 / -1
Query: 649 SPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSR 470
SPAP TLV K +P+MV RMPP F H TL *E GTMPA CA+WR AG SK R
Sbjct: 646 SPAPATLVTSPRFK*EWPLMVNRMPPFFTHGTLL*ERGTMPARYCAMWRKAGSAMSKWGR 467
Query: 469 GGLHHPPLSADCWSLGGHRSVAVT 398
GGLH PP S LGG + VAVT
Sbjct: 466 GGLHQPPSSLGRP*LGGQKLVAVT 395
Score = 86.8 bits (183), Expect(2) = 7e-042
Identities = 38/64 (59%), Positives = 43/64 (67%)
Frame = -3 / -1
Query: 379 GLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 200
G H L +QR+S*H P AAPS NS VL+A V PYP YPHAP +VP+ S PP*K
Sbjct: 382 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*K 203
Query: 199 VAWA 188
VAWA
Sbjct: 202 VAWA 191
Score = 73.0 bits (153), Expect(3) = 5e-041
Identities = 34/71 (47%), Positives = 42/71 (59%)
Frame = +2 / +2
Query: 398 GDGDRPVPAQRPAVRGQRRVVQPAAGALRPQHARVPPDRTGEGRHRAHLLPQGGVHEAGR 577
GD + +PAQ + +RR+VQPAA LR A +PP R GRHR LL +G V E
Sbjct: 395 GDRHQLLPAQLRPPQRRRRLVQPAAPPLRHGRAGLPPHRAVPGRHRTPLLQKGAVREERG 574
Query: 578 HPVHHHREQVL 610
HPVHH R +L
Sbjct: 575 HPVHHQRPLLL 607
Score = 31.8 bits (63), Expect(2) = 3e-038
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2 / +2
Query: 188 RPRDLLRRAGWVRHHGGRVRVQGHARAGVWRADGGREH 301
RP LLRR +RH G VRV+ + V GG EH
Sbjct: 191 RPCHLLRRRRRLRHDGRGVRVR*PVQHWVRHEHGGAEH 304
Score = 22.1 bits (42), Expect(3) = 5e-041
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +3 / +1
Query: 699 MKRNWGQVWQT 731
M R WG WQ+
Sbjct: 691 MSRTWGLTWQS 723
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 100 bits (212), Expect(3) = 5e-041
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +1
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 151 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 330
Query: 354 VDS 362
S
Sbjct: 331 QGS 339
Score = 81.7 bits (172), Expect(3) = 5e-041
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVP 539
++ +TAT+LCP N + D GGWCNPPR HFD++ PA+LQI +AGIVP
Sbjct: 355 SITITATNLCPANYALANDDGGWCNPPRAHFDMAKPAYLQIGIYRAGIVP 504
Score = 24.9 bits (48), Expect(3) = 5e-041
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 537 PISYRRVACTK 569
P+SYRRV C K
Sbjct: 503 PVSYRRVPCVK 535
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 130 bits (279), Expect(2) = 2e-040
Identities = 48/74 (64%), Positives = 61/74 (82%)
Frame = +3 / +1
Query: 459 CNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVG 638
CNPPR HFD++ PAFL I Q +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 639 GAGDIAAVSVKGSK 680
GAGD +VS+KG++
Sbjct: 181 GAGDARSVSIKGTR 222
Score = 55.6 bits (115), Expect(2) = 2e-040
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +3 / +1
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
R W M RNWG WQ+ L + L+FRV +SD R TS PA W+F T+
Sbjct: 220 RTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAGWQFRQTF 381
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 100 bits (212), Expect(2) = 1e-037
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +1
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 148 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 327
Query: 354 VDS 362
S
Sbjct: 328 QGS 336
Score = 77.1 bits (162), Expect(2) = 1e-037
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAG 530
++ +TAT+LCPPN D GGWCNPPR HFD++ PA+LQI +AG
Sbjct: 352 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAG 492
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 108 bits (230), Expect(2) = 3e-036
Identities = 41/65 (63%), Positives = 54/65 (83%)
Frame = +3 / +2
Query: 486 LSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVS 665
++ PAFL IAQ +AGIVP+SYRRV C K+GGIR+TI G+ YFN+V +TNV GAGD +VS
Sbjct: 2 MAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVS 181
Query: 666 VKGSK 680
+KG++
Sbjct: 182 IKGTR 196
Score = 64.3 bits (134), Expect(2) = 3e-036
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +3 / +2
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
R W M RNWG WQ+ L + L+FRV +SD R TS PA W+FG T++ ++
Sbjct: 194 RTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQ 367
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 150 bits (322), Expect = 1e-035
Identities = 58/118 (49%), Positives = 80/118 (67%)
Frame = +3 / +2
Query: 501 FLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ+ L + L+FRV + + S + +P W FG T+ ++
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 150 bits (322), Expect = 1e-035
Identities = 58/118 (49%), Positives = 80/118 (67%)
Frame = +3 / +2
Query: 501 FLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
F +IA +AGIVP+SYRRVAC K+GGIR+TI G+ YFN+V +TNVGG GD+ AVSVK ++
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ+ L + L+FRV + + S + +P W FG T+ ++
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQ 355
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 149 bits (320), Expect = 3e-035
Identities = 57/125 (45%), Positives = 80/125 (64%)
Frame = +3 / +2
Query: 441 ADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMV 620
+D GGWCNPPR HFD++ PA+ +I + GI+PI Y+RV C K+GG+R+TI+G+ YF +V
Sbjct: 2 SDKGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLV 181
Query: 621 TITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATS 800
TNV AG + A+ V+GSK W M NWG W + L + L+FRV +D +
Sbjct: 182 LPTNVAAAGSVRAMDVRGSKSGDWMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVF 361
Query: 801 WHVLP 815
V+P
Sbjct: 362 SDVVP 376
>gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009I04f, mRNA sequence
Length = 817
Score = 100 bits (213), Expect(3) = 5e-035
Identities = 38/74 (51%), Positives = 46/74 (62%)
Frame = +3 / +1
Query: 132 GGRVVHHNHGKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLF 311
G + HH H G AHATFYGG D SGT GACGY + + GYG T A+ST LF
Sbjct: 172 GPGIGHHAHAPIGGGAWASAHATFYGGGDASGTMGGACGYGNLYSTGYGSNTAALSTALF 351
Query: 312 GDGAACGGCYEVRC 353
+G +CG C++VRC
Sbjct: 352 NNGLSCGACFKVRC 393
Score = 48.3 bits (99), Expect(3) = 5e-035
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +3 / +1
Query: 396 VVTATDLCPPNDQQSADSGGWCNPPR 473
V TAT+ CPPN +S D+GGWCNP R
Sbjct: 448 VETATNFCPPNLCESYDAGGWCNPSR 525
Score = 37.7 bits (76), Expect(3) = 5e-035
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3 / +3
Query: 465 PPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQG 575
P D+S + +I +AGIVP+SYRR AC ++G
Sbjct: 516 PFPSQLDMSQRSVQRIVL*RAGIVPLSYRREACPEKG 626
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 100 bits (212), Expect(2) = 3e-033
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE++C
Sbjct: 159 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 338
Query: 354 VDS 362
S
Sbjct: 339 QGS 347
Score = 62.5 bits (130), Expect(2) = 3e-033
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLS 491
++ +TAT+LCPPN D GGWCNPPR HFD++
Sbjct: 363 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMA 464
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 111 bits (237), Expect(2) = 5e-033
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE+RC
Sbjct: 156 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 335
Query: 354 VDSPSGCKPNAATLVVT 404
++ S C+P + + T
Sbjct: 336 DNAGSSCRPGSIMVTAT 386
Score = 92.7 bits (196), Expect(2) = 6e-022
Identities = 34/60 (56%), Positives = 44/60 (73%)
Frame = +3 / +3
Query: 366 SGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPIS 545
+G +++VTAT+ CPPN +D GGWCNPPR HFD++ PAFL IAQ +AGIVP+S
Sbjct: 342 AGSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 521
Score = 86.8 bits (183), Expect(2) = 5e-030
Identities = 38/64 (59%), Positives = 43/64 (67%)
Frame = -3 / -3
Query: 379 GLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 200
G H L +QR+S*H P AAPS NS VL+A V PYP YPHAP +VP+ S PP*K
Sbjct: 361 GRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*K 182
Query: 199 VAWA 188
VAWA
Sbjct: 181 VAWA 170
Score = 64.8 bits (135), Expect(2) = 5e-030
Identities = 29/49 (59%), Positives = 31/49 (63%)
Frame = -3 / -3
Query: 544 EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVT 398
E GTMPA CA+WR AG SK RGGLH PP S LGG + VAVT
Sbjct: 520 ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVT 374
Score = 50.1 bits (103), Expect(2) = 5e-033
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = +1 / +1
Query: 397 W*RRPTCARPTTSSPRTAAGGATRRGSTST 486
W* PT ARPTT+SP T A GATRR TST
Sbjct: 373 W*PPPTSARPTTASPATTAAGATRRAPTST 462
Score = 31.8 bits (63), Expect(2) = 6e-022
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2 / +2
Query: 188 RPRDLLRRAGWVRHHGGRVRVQGHARAGVWRADGGREH 301
RP LLRR +RH G VRV+ + V GG EH
Sbjct: 170 RPCHLLRRRRRLRHDGRGVRVR*PVQHWVRHEHGGAEH 283
>gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08L09V 5', mRNA sequence
Length = 357
Score = 141 bits (303), Expect = 6e-033
Identities = 53/110 (48%), Positives = 72/110 (65%)
Frame = +3 / +1
Query: 240 ACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGCKPNAATLVVTATDLC 419
ACGY + GYG+ A+ST LF +G +CG CY + C S S + V+AT+LC
Sbjct: 28 ACGYGNLYTGGYGINNAALSTTLFNNGLSCGQCYLITCDTSKSNMCKPGTAITVSATNLC 207
Query: 420 PPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
PPN ++ D+GGWCNPPR HFD+S PA+ +A +AGI P+ Y+RVAC +
Sbjct: 208 PPNWAKANDNGGWCNPPRVHFDMSQPAWENLAIYRAGIXPVLYQRVACKR 357
>gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O13f, mRNA sequence
Length = 669
Score = 91.8 bits (194), Expect(2) = 3e-032
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++V+T T CPPN AD+ G CNPP HF L M AF +IA KAG++PI YRRV C +
Sbjct: 402 SMVMTGTKFCPPNYGFPADACGVCNPPNHHFLLPMQAFEKIALWKAGVMPIQYRRVKCLR 581
Query: 570 QGGIRYTITGNKYFNMVTITNV 635
+ +R +++G K V I V
Sbjct: 582 ESSVRLSVSGKKLLFTVLIXMV 647
Score = 67.5 bits (141), Expect(2) = 3e-032
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +3 / +3
Query: 198 TFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVD 359
++Y D GACG+ D GYG+ TV +ST L GA+C GCYEV CVD
Sbjct: 213 SYYFAADPGDAIGGACGFWDLGKHGYGMATVGLSTALIYRGASCRGCYEVNCVD 374
>gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N24 5', mRNA sequence
Length = 370
Score = 138 bits (295), Expect = 7e-032
Identities = 48/96 (50%), Positives = 71/96 (73%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ V+AT+ CPPN +D+GGWCNPPR HFD+S PA+ I +AGI+P+ Y++V C +
Sbjct: 34 SITVSATNFCPPNWDLPSDNGGWCNPPRHHFDMSQPAWENIGIYRAGIIPVFYQQVKCWR 213
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
QGG+R+TI G YF +V + N+ G+G I ++SVKG+
Sbjct: 214 QGGVRFTINGFNYFELVLVANIAGSGSIKSMSVKGT 321
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 107 bits (229), Expect(2) = 3e-031
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + + GYG T A+ST LF DGAACG CYE+RC
Sbjct: 177 GGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRC 356
Query: 354 VDSPSGCKPNAATLVVT 404
++ S C+ + + T
Sbjct: 357 DNAGSSCRAGSIMVTAT 407
Score = 96.8 bits (205), Expect(2) = 3e-023
Identities = 36/63 (57%), Positives = 46/63 (73%)
Frame = +3 / +3
Query: 366 SGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPIS 545
+G A +++VTAT+ CPPN +D GGWCNPPR HFD++ PAFL IAQ +AGIVP
Sbjct: 363 AGSSCRAGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPCF 542
Query: 546 YRR 554
YR+
Sbjct: 543 YRK 551
Score = 84.9 bits (179), Expect(2) = 2e-028
Identities = 37/62 (59%), Positives = 42/62 (67%)
Frame = -3 / -2
Query: 373 HPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVA 194
H L +QR+S*H P AAPS NS VL+A V PYP YPHAP +VP+ S PP*KVA
Sbjct: 376 HELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAPPIVPEASPPP*KVA 197
Query: 193 WA 188
WA
Sbjct: 196 WA 191
Score = 61.6 bits (128), Expect(2) = 2e-028
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = -3 / -2
Query: 547 *EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVT 398
*+ GTMPA CA+ R AG SK RGGLHHPP S LGG + VAVT
Sbjct: 544 *KQGTMPARYCAM*RKAGSAMSKWGRGGLHHPPSSLGSP*LGGQKLVAVT 395
Score = 47.8 bits (98), Expect(2) = 3e-031
Identities = 20/30 (66%), Positives = 20/30 (66%)
Frame = +1 / +1
Query: 397 W*RRPTCARPTTSSPRTAAGGATRRGSTST 486
W* PT ARPTT P T AGGATRR T T
Sbjct: 394 W*PPPTSARPTTGXPATTAGGATRRAPTLT 483
Score = 31.8 bits (63), Expect(2) = 3e-023
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2 / +2
Query: 188 RPRDLLRRAGWVRHHGGRVRVQGHARAGVWRADGGREH 301
RP LLRR +RH G VRV+ + V GG EH
Sbjct: 191 RPCHLLRRRRRLRHDGRGVRVR*PVQHWVRHEHGGAEH 304
>gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D11f, mRNA sequence
Length = 521
Score = 105 bits (223), Expect(2) = 1e-029
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = +3 / +1
Query: 132 GGRVVHHNHGKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLF 311
G + HH H F G AHATFYGG D SGT GACGY + + GYG T A+ST LF
Sbjct: 178 GPGIGHHAHAPFGGGAWASAHATFYGGGDASGTMGGACGYGNLYSTGYGSNTAALSTALF 357
Query: 312 GDGAACGGCYEVRC 353
+G +CG C+EVRC
Sbjct: 358 NNGLSCGACFEVRC 399
Score = 45.5 bits (93), Expect(2) = 1e-029
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3 / +1
Query: 396 VVTATDLCPPNDQQSADSGGWC 461
VVTAT+ CPPN +S+D+GGWC
Sbjct: 454 VVTATNFCPPNFGESSDAGGWC 519
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 74.8 bits (157), Expect(2) = 2e-028
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +3 / +1
Query: 546 YRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
Y RV C K+GG+R+TI G+ YFN+V +TNV GAGD+ +VS+KGS
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGS 138
Score = 71.2 bits (149), Expect(2) = 2e-028
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ DL +SL+FRV SD R TS + PA W FG T++ +
Sbjct: 148 WQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQ 312
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 588,740,863
Number of Sequences: 312970
Number of extensions: 12475568
Number of successful extensions: 216225
Number of sequences better than 1.0e-020: 83
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 12871556852
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)