TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071507.2.1
(921 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 297 8e-080
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 297 8e-080
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 296 2e-079
gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedl... 291 4e-078
gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike... 160 1e-077
gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. v... 267 1e-071
gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedl... 264 7e-070
gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA,... 251 1e-066
gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachi... 234 3e-064
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 236 2e-061
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 221 3e-057
gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedl... 160 3e-056
gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. v... 217 8e-056
gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedl... 212 3e-054
gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA li... 211 5e-054
gb|BI957446.1|BI957446 HVSMEn0009J16f Hordeum vulgare rachi... 210 1e-053
gb|AV931399.1|AV931399 AV931399 K. Sato unpublished cDNA li... 160 2e-053
gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA li... 206 2e-052
gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA li... 199 1e-050
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 197 7e-050
gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. v... 194 6e-049
gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. v... 190 1e-047
gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedl... 184 5e-046
gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. v... 183 1e-045
gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. v... 183 1e-045
gb|BJ456704.1|BJ456704 BJ456704 K. Sato unpublished cDNA li... 129 8e-045
gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, dro... 129 2e-044
gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA li... 179 2e-044
gb|BQ458310.1|BQ458310 HA05J23r HA Hordeum vulgare subsp. v... 178 4e-044
emb|X92754.1|HVCADMRNA H.vulgare mRNA for cinnamyl alcohol ... 175 3e-043
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 170 1e-041
gb|BI957127.1|BI957127 HVSMEn0007J20f Hordeum vulgare rachi... 170 1e-041
gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. v... 164 6e-040
gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedl... 162 2e-039
gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow st... 161 5e-039
gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA li... 160 1e-038
gb|BE194442.1|BE194442 HVSMEh0085I24f Hordeum vulgare 5-45 ... 156 1e-037
gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no... 155 2e-037
gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachi... 150 8e-036
gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. v... 149 3e-035
gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA li... 147 1e-034
gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA li... 93 9e-034
gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachi... 139 2e-032
gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA li... 138 6e-032
gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. v... 138 6e-032
gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. v... 137 8e-032
gb|BU999880.1|BU999880 HS17B20u HS Hordeum vulgare subsp. v... 84 2e-031
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 136 2e-031
gb|BJ447037.1|BJ447037 BJ447037 K. Sato unpublished cDNA li... 135 3e-031
gb|BI957209.1|BI957209 HVSMEn0008C08f Hordeum vulgare rachi... 135 4e-031
gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA li... 132 4e-030
gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA li... 130 1e-029
gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA li... 130 1e-029
gb|AL504577.1|AL504577 AL504577 Hordeum vulgare Barke roots... 97 4e-029
gb|BF623534.2|BF623534 HVSMEa0002J16f Hordeum vulgare seedl... 127 6e-029
gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachi... 119 2e-026
gb|AL509755.1|AL509755 AL509755 Hordeum vulgare Barke devel... 72 5e-026
gb|AL510922.1|AL510922 AL510922 Hordeum vulgare Barke devel... 111 4e-024
gb|BJ451867.1|BJ451867 BJ451867 K. Sato unpublished cDNA li... 110 2e-023
gb|BJ449238.1|BJ449238 BJ449238 K. Sato unpublished cDNA li... 108 4e-023
gb|CB880789.1|CB880789 HM07N11w HM Hordeum vulgare subsp. v... 106 1e-022
gb|BJ455039.1|BJ455039 BJ455039 K. Sato unpublished cDNA li... 72 4e-022
gb|BU994127.1|BU994127 HM05N11r HM Hordeum vulgare subsp. v... 105 4e-022
gb|BQ661689.1|BQ661689 HM04O09u HM Hordeum vulgare subsp. v... 105 5e-022
gb|CX662371.1|CX662371 EST 159 Expressed sequences from Bar... 104 7e-022
gb|BQ662843.1|BQ662843 HS04G20u HS Hordeum vulgare subsp. v... 72 3e-021
gb|CK124014.1|CK124014 BES1824106h23 BES1824 Hordeum vulgar... 102 3e-021
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 297 bits (642), Expect = 8e-080
Identities = 120/148 (81%), Positives = 135/148 (91%)
Frame = -1 / +3
Query: 660 FGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLL 481
FGM+VTVISTS KR+EA+E LGADEFL+SRD +QM+AA GTMDGI+DTVSAWHPI+PL
Sbjct: 3 FGMRVTVISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLF 182
Query: 480 ALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEV 301
AL+KP+GQMV VG P+KPLELPAYAIVPGGKG+AGN VG +RDCQAMLEFA KHGI AEV
Sbjct: 183 ALMKPMGQMVFVGGPTKPLELPAYAIVPGGKGIAGNCVGGIRDCQAMLEFAAKHGITAEV 362
Query: 300 EVIKMDYVNTAMERLEKNDVRYRFVIDV 217
EVIKMDYVNTA+ERL KNDVRYRFVID+
Sbjct: 363 EVIKMDYVNTALERLAKNDVRYRFVIDI 446
Score = 111 bits (238), Expect(3) = 1e-039
Identities = 53/87 (60%), Positives = 57/87 (65%)
Frame = +2 / -2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP GF SA+SG IGCHADTVS MPSMVP AA I S SRL
Sbjct: 265 GTMAYAGSSSGLVGPPTNTICPIGFISANSGEIGCHADTVSRMPSMVPTAACICSGSRLT 86
Query: 578 RNSSAPRFSMASWRLLADVLMTVTFIP 658
RNSSAP S AS R +VL+TVT +P
Sbjct: 85 RNSSAPSRSSASSRFPGEVLITVTRMP 5
Score = 67.0 bits (140), Expect(3) = 1e-039
Identities = 31/52 (59%), Positives = 32/52 (61%)
Frame = +2 / -2
Query: 200 EPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQS 355
EPRLPA AVLT*SI +TSTSA MPCF ANSSMAWQS
Sbjct: 463 EPRLPAMSMTKR*RTSFFASRSSAVLT*SIFITSTSAVMPCFAANSSMAWQS 308
Score = 22.6 bits (43), Expect(3) = 1e-039
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP* R S+
Sbjct: 324 AWPGSP*CRRRSSR 283
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 297 bits (642), Expect = 8e-080
Identities = 120/148 (81%), Positives = 135/148 (91%)
Frame = -1 / -3
Query: 660 FGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLL 481
FGM+VTVISTS KR+EA+E LGADEFL+SRD +QM+AA GTMDGI+DTVSAWHPI+PL
Sbjct: 552 FGMRVTVISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLF 373
Query: 480 ALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEV 301
AL+KP+GQMV VG P+KPLELPAYAIVPGGKG+AGN VG +RDCQAMLEFA KHGI AEV
Sbjct: 372 ALMKPMGQMVFVGGPTKPLELPAYAIVPGGKGIAGNCVGGIRDCQAMLEFAAKHGITAEV 193
Query: 300 EVIKMDYVNTAMERLEKNDVRYRFVIDV 217
EVIKMDYVNTA+ERL KNDVRYRFVID+
Sbjct: 192 EVIKMDYVNTALERLAKNDVRYRFVIDI 109
Score = 111 bits (238), Expect(3) = 1e-039
Identities = 53/87 (60%), Positives = 57/87 (65%)
Frame = +2 / +2
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP GF SA+SG IGCHADTVS MPSMVP AA I S SRL
Sbjct: 290 GTMAYAGSSSGLVGPPTNTICPIGFISANSGEIGCHADTVSRMPSMVPTAACICSGSRLT 469
Query: 578 RNSSAPRFSMASWRLLADVLMTVTFIP 658
RNSSAP S AS R +VL+TVT +P
Sbjct: 470 RNSSAPSRSSASSRFPGEVLITVTRMP 550
Score = 67.0 bits (140), Expect(3) = 1e-039
Identities = 31/52 (59%), Positives = 32/52 (61%)
Frame = +2 / +2
Query: 200 EPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQS 355
EPRLPA AVLT*SI +TSTSA MPCF ANSSMAWQS
Sbjct: 92 EPRLPAMSMTKR*RTSFFASRSSAVLT*SIFITSTSAVMPCFAANSSMAWQS 247
Score = 22.6 bits (43), Expect(3) = 1e-039
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 339 AWPGSP*RCRHCSQ 380
AWPGSP* R S+
Sbjct: 231 AWPGSP*CRRRSSR 272
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 296 bits (640), Expect = 2e-079
Identities = 123/155 (79%), Positives = 140/155 (90%)
Frame = -1 / +2
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKFGKAFGM VTVIS+S KR+EA+E LGAD FL+S+D +QMKAA GTMDGIIDTVSA
Sbjct: 29 AVKFGKAFGMTVTVISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAG 208
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
HP+ PLL L+KP+GQMV+VGAPS+PL LPAYAI+ GGK +AGN VGSVRDCQAML+FAGK
Sbjct: 209 HPLVPLLELMKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGK 388
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HGI A+VEV+KMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 389 HGITADVEVVKMDYVNTAVERLEKNDVRYRFVIDV 493
Score = 124 bits (265), Expect(2) = 7e-041
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT TICP GF S+SSG GC ADTVSMMPS+VP AAFI S+S L +N+SAPR S AS R
Sbjct: 267 PTTTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASAPRRSSASSRF 88
Query: 623 LADVLMTVTFIPKALPNLTA 682
L D L+TVT IP ALPNLTA
Sbjct: 87 LGDELITVTVIPNALPNLTA 28
Score = 63.4 bits (132), Expect(2) = 7e-041
Identities = 33/65 (50%), Positives = 37/65 (56%)
Frame = +1 / -1
Query: 250 LLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLER 429
LL+PL R DAVLPRE++H LAV AA VP AL A DGVG Q +
Sbjct: 460 LLQPLDRRVDVVHLDDLDVRGDAVLPREVQHRLAVAHAAHAVPGQALAASDDGVGWQRQG 281
Query: 430 LARRA 444
LARRA
Sbjct: 280 LARRA 266
>gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012A06f, mRNA sequence
Length = 852
Score = 291 bits (630), Expect = 4e-078
Identities = 122/155 (78%), Positives = 139/155 (89%)
Frame = -1 / +2
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKFGKAFGM VTVIS+S KR+EA+E LGAD FL+S+D +QMKAA GTMDGIIDTVSA
Sbjct: 14 AVKFGKAFGMTVTVISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAG 193
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGK 322
HP+ PLL L+KP+GQMV+VGAPS+PL LPAYAI+ GGK +AGN VGSVRDCQAML+FAGK
Sbjct: 194 HPLVPLLELMKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGK 373
Query: 321 HGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
HGI A+VEV+KMDYVNTA+ERLEKNDVR RFVIDV
Sbjct: 374 HGITADVEVVKMDYVNTAVERLEKNDVRDRFVIDV 478
Score = 124 bits (265), Expect(2) = 7e-041
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT TICP GF S+SSG GC ADTVSMMPS+VP AAFI S+S L +N+SAPR S AS R
Sbjct: 252 PTTTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASAPRRSSASSRF 73
Query: 623 LADVLMTVTFIPKALPNLTA 682
L D L+TVT IP ALPNLTA
Sbjct: 72 LGDELITVTVIPNALPNLTA 13
Score = 63.4 bits (132), Expect(2) = 7e-041
Identities = 33/65 (50%), Positives = 37/65 (56%)
Frame = +1 / -3
Query: 250 LLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLER 429
LL+PL R DAVLPRE++H LAV AA VP AL A DGVG Q +
Sbjct: 445 LLQPLDRRVHVVHLDDLDVRGDAVLPREVQHRLAVAHAAHAVPGQALAASDDGVGWQRQG 266
Query: 430 LARRA 444
LARRA
Sbjct: 265 LARRA 251
>gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A06f, mRNA sequence
Length = 994
Score = 160 bits (345), Expect(3) = 1e-077
Identities = 69/110 (62%), Positives = 82/110 (74%)
Frame = -1 / +3
Query: 780 CAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVISTSASKRQEAIE 601
CA +PMM++GLN PGK +AVKFGKAFGM VTVIS+S KR+EA+E
Sbjct: 60 CAASRCTAPMMQYGLNAPGKHLGVVGLGGLGHMAVKFGKAFGMTVTVISSSPRKREEALE 239
Query: 600 NLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMV 451
LGAD FL+S+D +QMKAA GTMDGIIDTVSA HP+ PLL L+KP+GQMV
Sbjct: 240 RLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPMGQMV 389
Score = 143 bits (306), Expect(3) = 1e-077
Identities = 57/75 (76%), Positives = 67/75 (89%)
Frame = -1 / +2
Query: 450 IVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNT 271
+VGAPS+PL LPAYAI+ GGK +AGN VGSVRDCQAML+FAGKHGI A+VEV K DY+NT
Sbjct: 389 VVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVFKKDYLNT 568
Query: 270 AMERLEKNDVRYRFV 226
A+ERLE ND+RYRF+
Sbjct: 569 AVERLENNDLRYRFL 613
Score = 119 bits (254), Expect(3) = 1e-040
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = +2 / -1
Query: 452 TICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRLLAD 631
TICP GF S+SSG GC ADTVSMMPS+VP AAFI S+S L +N+SAPR S AS R L D
Sbjct: 388 TICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASAPRRSSASSRFLGD 209
Query: 632 VLMTVTFIPKALPNLTA 682
L+TVT IP ALPNLTA
Sbjct: 208 ELITVTVIPNALPNLTA 158
Score = 59.7 bits (124), Expect(3) = 1e-040
Identities = 28/44 (63%), Positives = 31/44 (70%)
Frame = +1 / -1
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE++H LAV AA VP AL A DGVG Q + LARRA
Sbjct: 526 DAVLPREVQHRLAVAHAAHAVPGQALAASDDGVGWQRQGLARRA 395
Score = 26.3 bits (51), Expect(3) = 1e-040
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2 / -1
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVGDAD 829
C PG+LRP+ I+G AQ + + DA+
Sbjct: 121 CFPGALRPYCIIGAVHRDAAQEQRRRPGERQALRDAE 11
Score = 25.8 bits (50), Expect(3) = 1e-077
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1 / +2
Query: 819 PTGLALDRTAPLLCAGVTVYS 757
P L+L APLL VTVYS
Sbjct: 20 PESLSLAGAAPLLLRRVTVYS 82
>gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O19
5-PRIME, mRNA sequence
Length = 595
Score = 267 bits (578), Expect(2) = 1e-071
Identities = 111/149 (74%), Positives = 124/149 (83%)
Frame = -1 / +1
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P GL LD+ APLLCAGVTVYSPMMR GLN PGK VAVKFGKAFGM+VTV
Sbjct: 145 PDGLPLDKAAPLLCAGVTVYSPMMRFGLNAPGKHLGVVGLGGLGHVAVKFGKAFGMRVTV 324
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
ISTS KR+EA+E LGADEFL+SRD +QM+AA GTMDGI+DTVSAWHPI+PL AL+KP+G
Sbjct: 325 ISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLFALMKPMG 504
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
QMV VG P+KPLELPAYAIVPGGKG+AGN
Sbjct: 505 QMVFVGGPTKPLELPAYAIVPGGKGIAGN 591
Score = 179 bits (385), Expect = 2e-044
Identities = 85/141 (60%), Positives = 90/141 (63%)
Frame = +2 / -3
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP GF SA+SG IGCHADTVS MPSMVP AA I S SRL
Sbjct: 566 GTMAYAGSSSGLVGPPTNTICPIGFISANSGEIGCHADTVSRMPSMVPTAACICSGSRLT 387
Query: 578 RNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMG 757
RNSSAP S AS R +VLMTVT +P ALPNLTA C PG+ RP RI+G
Sbjct: 386 RNSSAPSRSSASSRFPGEVLMTVTRMPNALPNLTATWPRPPRPTTPRCFPGAFRPKRIIG 207
Query: 758 LYTVTPAQSSGAVRSSAKPVG 820
LYTVTPAQSSGA SS P G
Sbjct: 206 LYTVTPAQSSGAALSSGSPSG 144
Score = 23.1 bits (44), Expect(2) = 1e-071
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 921 VLTSNGVDHAHXRA 880
VLTSNG+D H A
Sbjct: 42 VLTSNGIDPEHGGA 83
>gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005J24f, mRNA sequence
Length = 595
Score = 264 bits (570), Expect = 7e-070
Identities = 113/169 (66%), Positives = 133/169 (78%)
Frame = -1 / +2
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P L+L APLLCAGVTVYSPMM++GLN PGK +AVKFGKAFGM VTV
Sbjct: 74 PESLSLAGAAPLLCAGVTVYSPMMQYGLNAPGKHLGVVGLGGLGHMAVKFGKAFGMTVTV 253
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S KR+EA+E LGAD FL+S+D +QMKAA GTMDGIIDTVSA HP+ PLL L+KP+G
Sbjct: 254 ISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAVHPLVPLLELMKPMG 433
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGI 313
QMV+VGAPS+PL LPAY I+ K +AGN V SVR+CQA+L+FAGKHGI
Sbjct: 434 QMVVVGAPSEPLALPAYPIIRCCKRLAGNGVASVRNCQAILDFAGKHGI 580
Score = 124 bits (265), Expect(3) = 2e-048
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT TICP GF S+SSG GC ADTVSMMPS+VP AAFI S+S L +N+SAPR S AS R
Sbjct: 450 PTTTICPIGFISSSSGTSGCTADTVSMMPSIVPAAAFICSASWLTKNASAPRRSSASSRF 271
Query: 623 LADVLMTVTFIPKALPNLTA 682
L D L+TVT IP ALPNLTA
Sbjct: 270 LGDELITVTVIPNALPNLTA 211
Score = 54.7 bits (113), Expect(3) = 2e-048
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +1 / -1
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
DAVLPRE+++GLAV A VP AL A DGVG Q + LA RA
Sbjct: 580 DAVLPREVQNGLAVAHAGHAVPGQALAASDDGVGWQRQGLAWRA 449
Score = 52.4 bits (108), Expect(3) = 2e-048
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +2 / -2
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGA 793
C PG+LRP+ I+GLYTVTPAQSSGA
Sbjct: 174 CFPGALRPYCIIGLYTVTPAQSSGA 100
>gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_P23 5', mRNA sequence
Length = 568
Score = 251 bits (542), Expect(2) = 1e-066
Identities = 105/142 (73%), Positives = 117/142 (82%)
Frame = -1 / +3
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P GL LD+ APLLCAGVTVYSPMMR GLN PGK VAVKFGKAFGM+VTV
Sbjct: 141 PDGLPLDKAAPLLCAGVTVYSPMMRFGLNAPGKHLGVVGLGGLGHVAVKFGKAFGMRVTV 320
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
ISTS KR+EA+E LGADEFL+SRD +QM+AA GTMDGI+DTVSAWHPI+PL AL+KP+G
Sbjct: 321 ISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLFALMKPMG 500
Query: 459 QMVIVGAPSKPLELPAYAIVPG 394
QMV VG P+KPLELPAYAIVPG
Sbjct: 501 QMVFVGGPTKPLELPAYAIVPG 566
Score = 179 bits (385), Expect = 2e-044
Identities = 85/141 (60%), Positives = 90/141 (63%)
Frame = +2 / -1
Query: 398 GTMXXXXXXXXXXXXPTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLM 577
GTM PT TICP GF SA+SG IGCHADTVS MPSMVP AA I S SRL
Sbjct: 562 GTMAYAGSSSGLVGPPTNTICPIGFISANSGEIGCHADTVSRMPSMVPTAACICSGSRLT 383
Query: 578 RNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMG 757
RNSSAP S AS R +VLMTVT +P ALPNLTA C PG+ RP RI+G
Sbjct: 382 RNSSAPSRSSASSRFPGEVLMTVTRMPNALPNLTATWPRPPRPTTPRCFPGAFRPKRIIG 203
Query: 758 LYTVTPAQSSGAVRSSAKPVG 820
LYTVTPAQSSGA SS P G
Sbjct: 202 LYTVTPAQSSGAALSSGSPSG 140
Score = 23.1 bits (44), Expect(2) = 1e-066
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 921 VLTSNGVDHAHXRA 880
VLTSNG+D H A
Sbjct: 39 VLTSNGIDPEHGGA 80
>gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011B06f, mRNA sequence
Length = 1173
Score = 234 bits (506), Expect(2) = 3e-064
Identities = 102/165 (61%), Positives = 123/165 (74%)
Frame = -1 / +2
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P L+L APLLCAGVTVYSPMM++GLN PGK +AVKFGKAF M VTV
Sbjct: 20 PESLSLAGAAPLLCAGVTVYSPMMQYGLNAPGKHLGVLSLGGLGHMAVKFGKAFWMTVTV 199
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S KR+EA+E L AD FL+S+D +QMKAA GTMD IIDTVSA HP+ PLL L+KP+G
Sbjct: 200 ISSSPRKREEALERLCADAFLVSQDAEQMKAAAGTMDSIIDTVSAGHPLVPLLELMKPMG 379
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAG 325
MV+VGAP++PL L A AI+ G+ +A N VG+V DCQAML+F G
Sbjct: 380 HMVVVGAPNEPLALSA*AIIRRGRRLARNGVGNVHDCQAMLDFGG 514
Score = 112 bits (239), Expect(3) = 4e-035
Identities = 53/80 (66%), Positives = 59/80 (73%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT TICP GF S+SSG GC ADTVSMM S+VP AAFI S+S L +N+SA R S AS R
Sbjct: 396 PTTTICPIGFISSSSGTSGCPADTVSMMLSIVPAAAFICSASWLTKNASAQRRSSASSRF 217
Query: 623 LADVLMTVTFIPKALPNLTA 682
L D L+TVT I ALPNLTA
Sbjct: 216 LGDELITVTVIQNALPNLTA 157
Score = 51.0 bits (105), Expect(3) = 4e-035
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +2 / -1
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGA 793
C PG+LRP+ I+GLYTVTPAQS+GA
Sbjct: 120 CFPGALRPYCIIGLYTVTPAQSNGA 46
Score = 31.3 bits (62), Expect(2) = 3e-064
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1 / +1
Query: 327 GKHGIGAEVEVIKMDYV 277
GKHG+ +V+ +KMDYV
Sbjct: 511 GKHGVNRDVQDVKMDYV 561
Score = 23.1 bits (44), Expect(3) = 4e-035
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / -2
Query: 278 T*SILMTSTSAPMPCFP 328
T*SI + TS PCFP
Sbjct: 560 T*SIFTSWTSRLTPCFP 510
>gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. vulgare cDNA clone HS05A02
3-PRIME, mRNA sequence
Length = 513
Score = 236 bits (509), Expect = 2e-061
Identities = 96/120 (80%), Positives = 110/120 (91%)
Frame = -1 / -2
Query: 576 ISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVP 397
+S+D +QMKAA GTMDGIIDTVSA HP+ PLL L+KP+GQMV+VGAPS+PL LPAYAI+
Sbjct: 512 VSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPMGQMVVVGAPSEPLALPAYAIIG 333
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GGK +AGN VGSVRDCQAML+FAGKHGI A+VEV+KMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 332 GGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMDYVNTAVERLEKNDVRYRFVIDV 153
Score = 74.4 bits (156), Expect(2) = 6e-026
Identities = 32/44 (72%), Positives = 35/44 (79%)
Frame = +2 / +1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRL 574
PT TICP GF S+SSG GC ADTVSMMPS+VP AAFI S+S L
Sbjct: 379 PTTTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWL 510
Score = 63.4 bits (132), Expect(2) = 6e-026
Identities = 33/65 (50%), Positives = 37/65 (56%)
Frame = +1 / +3
Query: 250 LLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLER 429
LL+PL R DAVLPRE++H LAV AA VP AL A DGVG Q +
Sbjct: 186 LLQPLDRRVDVVHLDDLDVRGDAVLPREVQHRLAVAHAAHAVPGQALAASDDGVGWQRQG 365
Query: 430 LARRA 444
LARRA
Sbjct: 366 LARRA 380
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 221 bits (478), Expect = 3e-057
Identities = 91/119 (76%), Positives = 107/119 (89%)
Frame = -1 / -1
Query: 573 SRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPG 394
+R +Q+KA+ GTM GII+TVSA HP+ PLL L+KP+GQMV+VGAPS+PL LPAYAI+ G
Sbjct: 725 ARTPNQIKASAGTMYGIINTVSAGHPLVPLLELIKPMGQMVVVGAPSEPLALPAYAIIGG 546
Query: 393 GKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GK +AGN VGSVRDCQAML+FAGKHGI A+VEV+KMDYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 545 GKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMDYVNTAVERLEKNDVRYRFVIDV 369
Score = 62.9 bits (131), Expect(2) = 3e-022
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = +2 / +1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIW 559
PT TICP GF S+S G GC ADTV MMP +VP A IW
Sbjct: 595 PTTTICPIGFISSSRGTSGCPADTVLMMPYIVPAEALIW 711
Score = 62.5 bits (130), Expect(2) = 3e-022
Identities = 30/54 (55%), Positives = 31/54 (57%)
Frame = +2 / +1
Query: 194 AAEPRLPAXXXXXXXXXXXXXXXXXAVLT*SILMTSTSAPMPCFPANSSMAWQS 355
AA LPA AVLT*SIL TSTSA MPCFPA SS+AWQS
Sbjct: 346 AAPSWLPATSMTKRYLTSFFSSRSTAVLT*SILTTSTSAVMPCFPAKSSIAWQS 507
>gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006J13f, mRNA sequence
Length = 864
Score = 160 bits (343), Expect(2) = 3e-056
Identities = 72/110 (65%), Positives = 85/110 (77%)
Frame = -1 / +2
Query: 552 KAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGN 373
+ A GTMDGII TVSA HPI PLL LLKP +V+VGAPS PL+LPAYAI+ GGK VAGN
Sbjct: 155 RLAAGTMDGIIYTVSAGHPIVPLLELLKPPRALVVVGAPSTPLQLPAYAIICGGKRVAGN 334
Query: 372 NVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVI 223
VG V C AML+FA KH I A+VEV+KMD VN+A+ RL+ + +RY FVI
Sbjct: 335 LVGCVCSCHAMLDFAAKHCITADVEVVKMDSVNSAV*RLDYD*LRYPFVI 484
Score = 79.0 bits (166), Expect(2) = 3e-056
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = -1 / +1
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATG 538
AVKFGKAFGM VTVIS+S KR+EA++ LGAD FL+S+D +QMKA G
Sbjct: 25 AVKFGKAFGMTVTVISSSPRKREEAVKRLGADAFLVSQDPEQMKAGGG 168
Score = 64.8 bits (135), Expect(3) = 2e-032
Identities = 30/65 (46%), Positives = 40/65 (61%)
Frame = +1 / -3
Query: 250 LLEPLHGRXXXXXXXXXXXGPDAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLER 429
+++PL+ R G DAVL RE++H +A +AA VP HAL A DGVGR+L+R
Sbjct: 457 IIQPLNRRIDGVHLNHLNVGGDAVLRREVQHRMAAANAAHEVPGHALAAADDGVGRKLQR 278
Query: 430 LARRA 444
A RA
Sbjct: 277 RAGRA 263
Score = 58.8 bits (122), Expect(3) = 2e-032
Identities = 29/48 (60%), Positives = 32/48 (66%)
Frame = +2 / -2
Query: 539 PVAAFIWSSSRLMRNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTA 682
P AFI S S L +N+SAP AS R L D L+TVT IP ALPNLTA
Sbjct: 167 PPPAFICSGSWLTKNASAPSRLTASSRFLGDELITVTVIPNALPNLTA 24
Score = 53.8 bits (111), Expect(3) = 2e-032
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAA 550
PT T GFSS+S G IGC ADTV MMPS+VP A+
Sbjct: 264 PTTTRARGGFSSSSRGTIGCPADTV*MMPSIVPAAS 157
>gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
5-PRIME, mRNA sequence
Length = 573
Score = 217 bits (468), Expect = 8e-056
Identities = 93/160 (58%), Positives = 117/160 (73%)
Frame = -1 / +3
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P + LD+ APLLCAG+TVYSPM HGLN PG VAVKFGKAFGMKVTV
Sbjct: 93 PDAMPLDKGAPLLCAGITVYSPMKYHGLNVPGLHLGVLGLGGLGHVAVKFGKAFGMKVTV 272
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S K+QEA+E LGAD F++S+D D+MKAA TMDGII+TVSA P+ PLL LLKP G
Sbjct: 273 ISSSPGKKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLKPNG 452
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAM 340
+M++VG P +P+E+P +A+V K +AG+ +G +RD Q M
Sbjct: 453 KMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEM 572
Score = 138 bits (296), Expect = 4e-032
Identities = 68/127 (53%), Positives = 75/127 (59%)
Frame = +2 / -3
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
PT+ I P G SS G +G ADTV MMPSMV AAFI S+S L N+SAP S AS
Sbjct: 469 PTMIILPLGLSSPRRGAMGMFADTVFMMPSMVLTAAFISSASLLTTNASAPSLSRASCFF 290
Query: 623 LADVLMTVTFIPKALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMGLYTVTPAQSSGAVRS 802
D L+TVTFIPKALPNLTA C PG+ PW MGLYTV PA S GA S
Sbjct: 289 PGDELITVTFIPKALPNLTATWPSPPSPSTPRCNPGTFSPWYFMGLYTVMPAHSRGAPLS 110
Query: 803 SAKPVGD 823
S G+
Sbjct: 109 SGMASGN 89
>gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022N15f, mRNA sequence
Length = 787
Score = 212 bits (457), Expect = 3e-054
Identities = 97/178 (54%), Positives = 120/178 (67%)
Frame = -1 / +3
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P L+L APLLCAGVTVYSPMM++GLN PGK +AVKFGKAFGM VTV
Sbjct: 252 PESLSLAGAAPLLCAGVTVYSPMMQYGLNAPGKHLGVVGLGGLGHMAVKFGKAFGMTVTV 431
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S KR+EA+E LGAD FL+S+D +QMKAA GTMDGIIDTVSA HP+ PLL L+KP+G
Sbjct: 432 ISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPMG 611
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKM 286
QMV V P++PL LP Y + + + G + ML+F G+ I + E K+
Sbjct: 612 QMVGVCPPNEPLALPTYPLHLRPEALVLERSGPPSQFKFMLDFPGEQCITPDGEEYKI 785
Score = 120 bits (256), Expect(2) = 6e-036
Identities = 55/79 (69%), Positives = 61/79 (77%)
Frame = +2 / -1
Query: 446 TITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRLL 625
T TICP GF S+SSG GC ADTVSMMPS+VP AAFI S+S L +N+SAPR S AS R L
Sbjct: 625 TPTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASAPRRSSASSRFL 446
Query: 626 ADVLMTVTFIPKALPNLTA 682
D L+TVT IP ALPNLTA
Sbjct: 445 GDELITVTVIPNALPNLTA 389
Score = 51.0 bits (105), Expect(2) = 6e-036
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +2 / -1
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGA 793
C PG+LRP+ I+GLYTVTPAQS+GA
Sbjct: 352 CFPGALRPYCIIGLYTVTPAQSNGA 278
>gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 3', mRNA sequence
Length = 634
Score = 211 bits (455), Expect = 5e-054
Identities = 87/144 (60%), Positives = 114/144 (79%)
Frame = -1 / -2
Query: 648 VTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLK 469
VTVIS+S K+QEA+E LGAD F++S+D D+MKAA TMDGII+TVSA P+ PLL LLK
Sbjct: 633 VTVISSSPGKKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLK 454
Query: 468 PLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIK 289
P G+M++VG P +P+E+P +A+V K +AG+ +G +RD Q ML+ A KHG+ A++EVI
Sbjct: 453 PNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVIS 274
Query: 288 MDYVNTAMERLEKNDVRYRFVIDV 217
+YVNTAMERL K DVRYRFVID+
Sbjct: 273 AEYVNTAMERLAKADVRYRFVIDI 202
>gb|BI957446.1|BI957446 HVSMEn0009J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009J16f, mRNA sequence
Length = 646
Score = 210 bits (452), Expect = 1e-053
Identities = 91/194 (46%), Positives = 130/194 (67%)
Frame = -1 / +2
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P GLA ++ APLLCAGVTVYSP+ GL PG + VK K+ G VTV
Sbjct: 62 PAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTV 241
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S KR EA+++LGADE+L+S D DQM AA ++D IIDTV HP+ P LALLK G
Sbjct: 242 ISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDG 421
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDY 280
++V++G ++PL + ++ G K + G+ +GS+ + + +L+F G+ +++EV+KMDY
Sbjct: 422 KLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTSQIEVVKMDY 601
Query: 279 VNTAMERLEKNDVR 238
VN A+E+LE+NDVR
Sbjct: 602 VNXALEKLERNDVR 643
Score = 76.7 bits (161), Expect(3) = 2e-024
Identities = 42/79 (53%), Positives = 45/79 (56%)
Frame = +2 / -2
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
P T PS SSA G GC TVSMM S AA IWS+S L R SSAPR S AS R
Sbjct: 438 PISTSLPSILSSAR*GSSGCFTGTVSMM*SSESAAAAIWSASELTRYSSAPRSSTASARF 259
Query: 623 LADVLMTVTFIPKALPNLT 679
L D L+TVT+ P L T
Sbjct: 258 LLDELITVTWWPMDLATFT 202
Score = 44.1 bits (90), Expect(3) = 2e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +2 / -2
Query: 725 PGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVG 820
PG + P GLYTVTPA SSGA S A P G
Sbjct: 156 PGVISPKCFSGLYTVTPAHSSGAACSGASPAG 61
Score = 29.0 bits (57), Expect(3) = 2e-024
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1 / -1
Query: 313 DAVLPRELEHGLAVPDAADIVPSHALPARHDGVGRQLERLARRA 444
+ ++ ELE L + A D P LP +H G + ERL A
Sbjct: 568 EPLVDAELEDLLRLVHAPDEAPRDGLPPQHHHWGHEAERLRDHA 437
>gb|AV931399.1|AV931399 AV931399 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19k10 3', mRNA sequence
Length = 683
Score = 160 bits (343), Expect(2) = 2e-053
Identities = 69/131 (52%), Positives = 89/131 (67%)
Frame = -1 / -2
Query: 804 LDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVISTSA 625
L++ APL+CAG+TVY+PM RH +N+PGK +AVKFGKAFG+KVTV+STS
Sbjct: 676 LEKAAPLVCAGITVYTPMTRHNMNQPGKSLGVVGLGGLGHMAVKFGKAFGLKVTVLSTSE 497
Query: 624 SKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIV 445
SKR EAI LGAD F++S D+ QM++ ++D I+DT S HP P LALLK G M +V
Sbjct: 496 SKRDEAINLLGADNFVVSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVGGLMALV 317
Query: 444 GAPSKPLELPA 412
G P + PA
Sbjct: 316 GFPGEIRVHPA 284
Score = 69.8 bits (146), Expect(2) = 2e-053
Identities = 26/60 (43%), Positives = 41/60 (68%)
Frame = -1 / -2
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G + ++G+ G +D Q M+ F + I ++E+IK+DY+N A+ERL DV+YRFVID+
Sbjct: 271 GARTLSGSVTGGTKDTQEMINFCAVNKIYPDIELIKIDYINEALERLVNRDVKYRFVIDI 92
>gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd27e20, mRNA
sequence
Length = 646
Score = 206 bits (444), Expect = 2e-052
Identities = 86/146 (58%), Positives = 113/146 (77%)
Frame = -1 / -2
Query: 654 MKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLAL 475
MKVTVIS+S K+QEA+E LGAD F++S+D ++MKAA TMDGII+TVSA P+ PLL L
Sbjct: 645 MKVTVISSSPGKKQEALERLGADAFVVSKDAEEMKAAMNTMDGIINTVSANIPMAPLLGL 466
Query: 474 LKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEV 295
LKP G+M++VG P P+E+ +A+V K +AG+ +G +RD Q ML+ A KH + A++EV
Sbjct: 465 LKPNGKMIMVGLPENPMEISPFALVATNKTLAGSCIGGMRDTQEMLDLAAKHDVTADIEV 286
Query: 294 IKMDYVNTAMERLEKNDVRYRFVIDV 217
I +YVNTAMERL K DVRYRFVID+
Sbjct: 285 IDAEYVNTAMERLAKADVRYRFVIDI 208
>gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 5', mRNA sequence
Length = 572
Score = 199 bits (430), Expect = 1e-050
Identities = 81/135 (60%), Positives = 107/135 (79%)
Frame = -1 / +3
Query: 621 KRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVG 442
K+QEA+E LGAD F++S+D D+MKAA TMDGII+TVSA P+ PLL LLKP G+M++VG
Sbjct: 15 KKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLKPNGKMIMVG 194
Query: 441 APSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAME 262
P +P+E+P +A+V K +AG+ +G +RD Q ML+ A KHG+ A++EVI +YVNTAME
Sbjct: 195 LPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAME 374
Query: 261 RLEKNDVRYRFVIDV 217
RL K DVRYRFVID+
Sbjct: 375 RLAKADVRYRFVIDI 419
>gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. vulgare cDNA clone HA13H23
5-PRIME, mRNA sequence
Length = 476
Score = 197 bits (425), Expect = 7e-050
Identities = 84/145 (57%), Positives = 111/145 (76%)
Frame = -1 / +1
Query: 651 KVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALL 472
KVTVISTS KR+EA+E LGAD F++S D +MKAA GTM GII+T SA + P LALL
Sbjct: 19 KVTVISTSPGKREEALERLGADAFVLSTDAAEMKAAVGTMHGIINTASAAASLHPYLALL 198
Query: 471 KPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVI 292
KP G+M+++G P+KPL++ A+A++ GGK +AG+ + S+ + Q ML+FA +HG+ A+VEV+
Sbjct: 199 KPHGKMILLGIPNKPLQVSAFALIGGGKTLAGSCMASISETQEMLDFAAEHGVAADVEVV 378
Query: 291 KMDYVNTAMERLEKNDVRYRFVIDV 217
VN AMERL K DVRYRFVIDV
Sbjct: 379 GAGEVNKAMERLAKGDVRYRFVIDV 453
>gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. vulgare cDNA clone HP02P10
3-PRIME, mRNA sequence
Length = 667
Score = 194 bits (418), Expect = 6e-049
Identities = 78/154 (50%), Positives = 117/154 (75%)
Frame = -1 / -1
Query: 678 VKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWH 499
VKFGKAFG+KVTVISTS +K +EA E+L AD+F++S D+ QM+A ++D +IDTVSA H
Sbjct: 667 VKFGKAFGLKVTVISTSPAKEREARESLKADDFVLSTDDKQMQAMARSLDYVIDTVSAQH 488
Query: 498 PITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKH 319
+ P+L LLK G++V+V AP KP+ELP++ ++ G + V+G+ G +++ Q M++ G+H
Sbjct: 487 SLGPILELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDLCGEH 308
Query: 318 GIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
GI A++E++ +N A+ RL +NDVRYRFV+DV
Sbjct: 307 GITADIELVSTGGINDALARLARNDVRYRFVVDV 206
>gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. vulgare cDNA clone HM11I22
3-PRIME, mRNA sequence
Length = 596
Score = 190 bits (409), Expect = 1e-047
Identities = 77/129 (59%), Positives = 101/129 (78%)
Frame = -1 / -2
Query: 603 ENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPL 424
E LGAD F++S+D D+MKAA TMDGII+TVSA P+ PLL LLKP G+M++VG P +P+
Sbjct: 595 ERLGADAFVVSKDADEMKAAVSTMDGIINTVSAXIPMAPLLGLLKPNGKMIMVGLPEQPI 416
Query: 423 ELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKND 244
E+P +A+V K +AG+ +G +RD Q ML+ A KHG+ A++EVI +YVNTAMERL K D
Sbjct: 415 EVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKAD 236
Query: 243 VRYRFVIDV 217
VRYRFVID+
Sbjct: 235 VRYRFVIDI 209
>gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006E02f, mRNA sequence
Length = 602
Score = 184 bits (397), Expect = 5e-046
Identities = 80/131 (61%), Positives = 96/131 (73%)
Frame = -1 / +2
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P L+L APLL AGVTVYSPMM++GL+ PGK + VKFGKAFGM VTV
Sbjct: 146 PESLSLVGAAPLL*AGVTVYSPMMQYGLDAPGKHLGVVGLWGLGHMGVKFGKAFGMTVTV 325
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S KR+EA+E LGAD FL+S+D + M AA TMDGIIDTVSA HP+ PL+ L+KP+G
Sbjct: 326 ISSSPRKREEALERLGADAFLVSQDAEHMNAAAATMDGIIDTVSAGHPLVPLMELMKPIG 505
Query: 459 QMVIVGAPSKP 427
QMV+V APS P
Sbjct: 506 QMVVVSAPSNP 538
Score = 111 bits (237), Expect(3) = 2e-033
Identities = 51/78 (65%), Positives = 58/78 (74%)
Frame = +2 / -3
Query: 446 TITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRLL 625
T TICP GF S+ SG GC ADTVSMMPS+V AAF+ S+S L +N+SAPR S AS R L
Sbjct: 519 TTTICPIGFISSISGTSGCPADTVSMMPSIVAAAAFMCSASWLTKNASAPRRSSASSRFL 340
Query: 626 ADVLMTVTFIPKALPNLT 679
D L+TVT IP ALPNLT
Sbjct: 339 GDELITVTVIPNALPNLT 286
Score = 45.5 bits (93), Expect(3) = 2e-033
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2 / -3
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGA 793
C PG+ P+ I+GLYTVTPAQS+GA
Sbjct: 246 CFPGASSPYCIIGLYTVTPAQSNGA 172
Score = 23.5 bits (45), Expect(3) = 2e-033
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -3
Query: 385 ALPARHDGVGRQLERL 432
ALPA +DGVG Q + L
Sbjct: 579 ALPASNDGVGCQRQGL 532
>gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01F04
3-PRIME, mRNA sequence
Length = 600
Score = 183 bits (394), Expect = 1e-045
Identities = 77/154 (50%), Positives = 112/154 (72%)
Frame = -1 / -2
Query: 678 VKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWH 499
VK K+ G VTVIS+S KR EA+++LGADE+L+S D DQM AA ++D IIDTV H
Sbjct: 590 VKVAKSMGHHVTVISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKH 411
Query: 498 PITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKH 319
P+ P LALLK G++V++G ++PL + ++ G K + G+ +GS+ + + +L+F
Sbjct: 410 PLEPYLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDK 231
Query: 318 GIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G+ +++EV+KMDYVN A+ERLE+NDVRYRFV+DV
Sbjct: 230 GLTSQIEVVKMDYVNQALERLERNDVRYRFVVDV 129
>gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I05
3-PRIME, mRNA sequence
Length = 621
Score = 183 bits (394), Expect = 1e-045
Identities = 77/154 (50%), Positives = 112/154 (72%)
Frame = -1 / -2
Query: 678 VKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWH 499
VK K+ G VTVIS+S KR EA+++LGADE+L+S D DQM AA ++D IIDTV H
Sbjct: 611 VKVAKSMGHHVTVISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKH 432
Query: 498 PITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKH 319
P+ P LALLK G++V++G ++PL + ++ G K + G+ +GS+ + + +L+F
Sbjct: 431 PLEPYLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDK 252
Query: 318 GIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G+ +++EV+KMDYVN A+ERLE+NDVRYRFV+DV
Sbjct: 251 GLTSQIEVVKMDYVNQALERLERNDVRYRFVVDV 150
>gb|BJ456704.1|BJ456704 BJ456704 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23a07 3', mRNA sequence
Length = 674
Score = 129 bits (276), Expect(2) = 8e-045
Identities = 58/115 (50%), Positives = 73/115 (63%)
Frame = -1 / -1
Query: 756 PMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVISTSASKRQEAIENLGADEFL 577
PM RH +N+PGK + VKFGKAFG+KVTV+STS SKR EAI LGAD F+
Sbjct: 662 PMTRHNMNQPGKSLGVVGLGGLGHMXVKFGKAFGLKVTVLSTSESKRDEAINLLGADNFV 483
Query: 576 ISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPA 412
+S D+ QM++ ++D I+DT S HP P LALLK G M +VG P + PA
Sbjct: 482 VSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVGGLMALVGFPGEIRVHPA 318
Score = 71.6 bits (150), Expect(2) = 8e-045
Identities = 27/60 (45%), Positives = 41/60 (68%)
Frame = -1 / -1
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G + ++G+ G +D Q M+ F + I ++E+IK+DY+N A+ERL DVRYRFVID+
Sbjct: 305 GARTLSGSVTGGTKDTQEMINFCAANKIYPDIELIKIDYINQALERLVNRDVRYRFVIDI 126
>gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G19 5', mRNA sequence
Length = 421
Score = 129 bits (276), Expect(2) = 2e-044
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -1 / +1
Query: 549 AATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNN 370
AA GTMDGIIDTVSA HP+ PLL L+KP+GQMV+VGAPS+PL LPAYAI+ GGK +AGN
Sbjct: 220 AAAGTMDGIIDTVSAGHPLVPLLELMKPMGQMVVVGAPSEPLALPAYAIIGGGKRLAGNG 399
Query: 369 VGSVRDC 349
VGSVRDC
Sbjct: 400 VGSVRDC 420
Score = 70.7 bits (148), Expect(2) = 2e-044
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -1 / +2
Query: 672 FGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMK 550
FGKAFGM VTVIS+S KR+EA+E LGAD FL+S+D +QMK
Sbjct: 2 FGKAFGMTVTVISSSPRKREEALERLGADAFLVSQDAEQMK 124
>gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c03 3', mRNA sequence
Length = 641
Score = 179 bits (385), Expect = 2e-044
Identities = 75/131 (57%), Positives = 99/131 (75%)
Frame = -1 / -2
Query: 609 AIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSK 430
A+ LGAD F++S + D+MKAA TMDGII+TVSA PI PLL LLKP G+MV+VG P
Sbjct: 640 ALGRLGADAFVVSNNADEMKAAMSTMDGIINTVSANMPIAPLLGLLKPNGKMVMVGLPEN 461
Query: 429 PLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEK 250
++LP +A+V K +AG+ +G + + Q ML+ A KHG+ A++EVI+ DYVNTAM+RL K
Sbjct: 460 SIQLPPFALVATNKTLAGSCMGGMSETQEMLDLAAKHGVTADIEVIRADYVNTAMDRLAK 281
Query: 249 NDVRYRFVIDV 217
DVRYRFVID+
Sbjct: 280 ADVRYRFVIDI 248
>gb|BQ458310.1|BQ458310 HA05J23r HA Hordeum vulgare subsp. vulgare cDNA clone HA05J23
5-PRIME, mRNA sequence
Length = 427
Score = 178 bits (383), Expect = 4e-044
Identities = 78/125 (62%), Positives = 93/125 (74%)
Frame = -1 / +2
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P + LD+ APLLCAG+TVYSPM HGLN PG VAVKFGKAFGMKVTV
Sbjct: 53 PDAMPLDKGAPLLCAGITVYSPMKYHGLNVPGLHLGVLGLGGLGHVAVKFGKAFGMKVTV 232
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S K+QEA+E LGAD F++S+D D+MKAA TMDGII+TVSA P+ PLL LLKP G
Sbjct: 233 ISSSPGKKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLKPNG 412
Query: 459 QMVIV 445
+M++V
Sbjct: 413 KMIMV 427
Score = 135 bits (289), Expect = 4e-031
Identities = 67/126 (53%), Positives = 74/126 (58%)
Frame = +2 / -2
Query: 446 TITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRLL 625
T+ I P G SS G +G ADTV MMPSMV AAFI S+S L N+SAP S AS
Sbjct: 426 TMIILPLGLSSPRRGAMGMFADTVFMMPSMVLTAAFISSASLLTTNASAPSLSRASCFFP 247
Query: 626 ADVLMTVTFIPKALPNLTAXXXXXXXXXXXXCLPGSLRPWRIMGLYTVTPAQSSGAVRSS 805
D L+TVTFIPKALPNLTA C PG+ PW MGLYTV PA S GA SS
Sbjct: 246 GDELITVTFIPKALPNLTATWPSPPSPSTPRCNPGTFSPWYFMGLYTVMPAHSRGAPLSS 67
Query: 806 AKPVGD 823
G+
Sbjct: 66 GMASGN 49
>emb|X92754.1|HVCADMRNA H.vulgare mRNA for cinnamyl alcohol dehydrogenase
Length = 458
Score = 175 bits (377), Expect = 3e-043
Identities = 72/149 (48%), Positives = 107/149 (71%)
Frame = -1 / +1
Query: 678 VKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWH 499
VK KA G VTVIS+S KRQEA+E+LGAD++L+S D +M+ ++D IIDTV +H
Sbjct: 10 VKIAKAMGHHVTVISSSDKKRQEALEHLGADDYLVSSDSTRMQEVADSLDYIIDTVPVFH 189
Query: 498 PITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKH 319
P+ P L+LL+ G+++++G + PL+ ++ G K + G+ VGS+++ + MLEF +
Sbjct: 190 PLEPYLSLLRLDGKLILMGVINTPLQFLTPVVMLGRKTITGSFVGSIKETEEMLEFCKEK 369
Query: 318 GIGAEVEVIKMDYVNTAMERLEKNDVRYR 232
G+ + +EV+KMDYVN A+ERLEKNDVRYR
Sbjct: 370 GLSSMIEVVKMDYVNKALERLEKNDVRYR 456
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 170 bits (365), Expect = 1e-041
Identities = 69/83 (83%), Positives = 78/83 (93%)
Frame = -1 / +1
Query: 465 LGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKM 286
+GQMV+VGAPS+PL LPAYAI+ GGK +AGN VGSVRDCQAML+FAGKHGI A+VEV+KM
Sbjct: 1 MGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKM 180
Query: 285 DYVNTAMERLEKNDVRYRFVIDV 217
DYVNTA+ERLEKNDVRYRFVIDV
Sbjct: 181 DYVNTAVERLEKNDVRYRFVIDV 249
>gb|BI957127.1|BI957127 HVSMEn0007J20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007J20f, mRNA sequence
Length = 876
Score = 170 bits (365), Expect = 1e-041
Identities = 73/153 (47%), Positives = 108/153 (70%)
Frame = -1 / +2
Query: 675 KFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHP 496
K K+ G VTVIS+S KR EA+++LGADE+L+S D DQM AA ++D IIDTV HP
Sbjct: 2 KVAKSMGHHVTVISSSNRKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHP 181
Query: 495 ITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHG 316
+ P LALLK G++V++G ++PL + ++ G K + G+ +GS+ + + +L+F G
Sbjct: 182 LEPYLALLKMDGKLVLMGVIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKG 361
Query: 315 IGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+ +++ V+KMDYVN A+ERLE+NDVRYRF + V
Sbjct: 362 LTSQIYVVKMDYVNHALERLERNDVRYRFGVYV 460
>gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. vulgare cDNA clone HI08G13
3-PRIME, mRNA sequence
Length = 579
Score = 164 bits (353), Expect = 6e-040
Identities = 67/135 (49%), Positives = 100/135 (74%)
Frame = -1 / -3
Query: 621 KRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVG 442
KR EA+++LGADE+L+S D DQM AA ++D IIDTV HP+ P LALLK G++V++G
Sbjct: 577 KRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMG 398
Query: 441 APSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAME 262
++PL + ++ G K + G+ +GS+ + + +L+F G+ +++EV+KMDYVN A+E
Sbjct: 397 VIAEPLSFVSPMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTSQIEVVKMDYVNQALE 218
Query: 261 RLEKNDVRYRFVIDV 217
RLE+NDVRYRFV+DV
Sbjct: 217 RLERNDVRYRFVVDV 173
>gb|BE559002.2|BE559002 HV_CEb0022D12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022D12f, mRNA sequence
Length = 694
Score = 162 bits (349), Expect = 2e-039
Identities = 72/108 (66%), Positives = 80/108 (74%)
Frame = -1 / +3
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P GL LD APLLCAGVTVYSPMM GLN PGK +AVKFGKAFGM VTV
Sbjct: 348 PEGLPLDGAAPLLCAGVTVYSPMMEFGLNAPGKHLGVVGLGGLGHMAVKFGKAFGMTVTV 527
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHP 496
IS+S KR+EA++ LGAD FL+S+D +QMKAA GTMDGIIDTVSA P
Sbjct: 528 ISSSPRKREEAVKRLGADAFLVSQDPEQMKAAAGTMDGIIDTVSAGPP 671
Score = 84.9 bits (179), Expect(2) = 9e-028
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = +2 / -1
Query: 497 GCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRLLADVLMTVTFIPKALPNL 676
G ADTVSMMPS+VP AAFI S S L +N+SAP AS R L D L+TVT IP ALPNL
Sbjct: 670 GGPADTVSMMPSIVPAAAFICSGSWLTKNASAPSRLTASSRFLGDELITVTVIPNALPNL 491
Query: 677 TA 682
TA
Sbjct: 490 TA 485
Score = 58.8 bits (122), Expect(2) = 9e-028
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +2 / -1
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVG 820
CLPG+LRP I+GLYTVTPAQSSGA S +P G
Sbjct: 448 CLPGALRPNSIIGLYTVTPAQSSGAAPSRGRPSG 347
>gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_I10 5', mRNA sequence
Length = 509
Score = 161 bits (346), Expect = 5e-039
Identities = 67/114 (58%), Positives = 87/114 (76%)
Frame = -1 / +2
Query: 558 QMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVA 379
+MKAA TMDGII+TVSA P+ PL LLKP G+MV+VG P KP+E+P +A+V K ++
Sbjct: 2 EMKAAMSTMDGIINTVSANIPMAPLFGLLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLS 181
Query: 378 GNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G+ +G + D Q ML+ A KHG+ A++EVI +YVNTAMERL K DVRYRFVID+
Sbjct: 182 GSFIGGMSDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDI 343
>gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 5', mRNA sequence
Length = 627
Score = 160 bits (344), Expect = 1e-038
Identities = 67/113 (59%), Positives = 86/113 (76%)
Frame = -1 / +1
Query: 555 MKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAG 376
MKAA TMDGII+TVSA P+ PL LLKP G+MV+VG P KP+E+P +A+V K ++G
Sbjct: 34 MKAAMSTMDGIINTVSANIPMAPLFGLLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLSG 213
Query: 375 NNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+ +G + D Q ML+ A KHG+ A++EVI +YVNTAMERL K DVRYRFVID+
Sbjct: 214 SFIGGMSDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDI 372
>gb|BE194442.1|BE194442 HVSMEh0085I24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085I24f, mRNA sequence
Length = 860
Score = 156 bits (336), Expect = 1e-037
Identities = 74/168 (44%), Positives = 104/168 (61%)
Frame = -1 / +1
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P GLA ++ APLLCAGVTVYSP+ GL PG + VK K+ G VTV
Sbjct: 148 PAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTV 327
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLG 460
IS+S KR EA+++LGADE+L+S D DQM AA ++D IIDTV HP+ P LALLK G
Sbjct: 328 ISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDG 507
Query: 459 QMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHG 316
++V++G ++PL + + G K + G+ +GS+ + + +F + G
Sbjct: 508 KLVLMGVIAEPLNFVSPMGMLGRKTITGSFLGSLDETEEGPKFWFEQG 651
Score = 76.7 bits (161), Expect(2) = 6e-021
Identities = 42/79 (53%), Positives = 45/79 (56%)
Frame = +2 / -1
Query: 443 PTITICPSGFSSASSGVIGCHADTVSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRL 622
P T PS SSA G GC TVSMM S AA IWS+S L R SSAPR S AS R
Sbjct: 524 PISTSLPSILSSAR*GSSGCFTGTVSMM*SSESAAAAIWSASELTRYSSAPRSSTASARF 345
Query: 623 LADVLMTVTFIPKALPNLT 679
L D L+TVT+ P L T
Sbjct: 344 LLDELITVTWWPMDLATFT 288
Score = 44.1 bits (90), Expect(2) = 6e-021
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +2 / -1
Query: 725 PGSLRPWRIMGLYTVTPAQSSGAVRSSAKPVG 820
PG + P GLYTVTPA SSGA S A P G
Sbjct: 242 PGVISPKCFSGLYTVTPAHSSGAACSGASPAG 147
>gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D17 5', mRNA sequence
Length = 441
Score = 155 bits (334), Expect = 2e-037
Identities = 65/111 (58%), Positives = 84/111 (75%)
Frame = -1 / +1
Query: 549 AATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNN 370
AA TMDGII+TVSA P+ PL LLKP G+MV+VG P KP+E+P +A+V K ++G+
Sbjct: 1 AAMSTMDGIINTVSANIPMAPLFGLLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLSGSF 180
Query: 369 VGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
+G + D Q ML+ A KHG+ A++EVI +YVNTAMERL K DVRYRFVID+
Sbjct: 181 IGGMSDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDI 333
>gb|BI960471.1|BI960471 HVSMEn0024L10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024L10f, mRNA sequence
Length = 647
Score = 150 bits (323), Expect = 8e-036
Identities = 61/74 (82%), Positives = 67/74 (90%)
Frame = -1 / +2
Query: 438 PSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMER 259
P+KPLELP AIVPGGKG+AGN VG +RDCQAMLEFA KHGI AEVEVIKMDYVNTA+ER
Sbjct: 2 PTKPLELPGDAIVPGGKGIAGNCVGGIRDCQAMLEFAAKHGITAEVEVIKMDYVNTALER 181
Query: 258 LEKNDVRYRFVIDV 217
+ KNDVRYRFVID+
Sbjct: 182 VAKNDVRYRFVIDI 223
>gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G11
3-PRIME, mRNA sequence
Length = 524
Score = 149 bits (319), Expect = 3e-035
Identities = 61/125 (48%), Positives = 91/125 (72%)
Frame = -1 / -1
Query: 591 ADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPA 412
ADE+L+S D DQM AA ++D IIDTV HP+ P LALLK G++V++G ++PL +
Sbjct: 524 ADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIAEPLSFVS 345
Query: 411 YAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYR 232
++ G K + G+ +GS+ + + +L+F G+ +++EV+KMDYVN A+ERLE+NDVRYR
Sbjct: 344 PMVMLGRKTITGSFIGSMDETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYR 165
Query: 231 FVIDV 217
FV+DV
Sbjct: 164 FVVDV 150
>gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36m01 3', mRNA sequence
Length = 222
Score = 147 bits (315), Expect = 1e-034
Identities = 57/73 (78%), Positives = 66/73 (90%)
Frame = -1 / -3
Query: 597 LGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLEL 418
LGA EFL+SRD +QM+A GTMDGI+DTVSAWHPI+PL AL+KP+GQMV VG P+KPLEL
Sbjct: 220 LGAXEFLVSRDPEQMQATVGTMDGILDTVSAWHPISPLFALMKPMGQMVFVGGPTKPLEL 41
Query: 417 PAYAIVPGGKGVA 379
PAYAIVPGGKG+A
Sbjct: 40 PAYAIVPGGKGIA 2
>gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25k20 3', mRNA sequence
Length = 600
Score = 93.2 bits (197), Expect(2) = 9e-034
Identities = 37/60 (61%), Positives = 47/60 (78%)
Frame = -1 / -1
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G K +AG+ +G +RD Q ML+ A KHG+ A++EVI +YVNTAMERL K DVRYRFVID+
Sbjct: 351 GNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDI 172
Score = 70.7 bits (148), Expect(2) = 9e-034
Identities = 28/46 (60%), Positives = 38/46 (82%)
Frame = -1 / -2
Query: 537 TMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIV 400
TMDGII+TVSA P+ PLL LLKP G+M++VG P +P+E+P +A+V
Sbjct: 593 TMDGIINTVSANIPMAPLLGLLKPNGKMIMVGLPEQPIEVPPFALV 456
>gb|BI957691.1|BI957691 HVSMEn0010L07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L07f, mRNA sequence
Length = 643
Score = 139 bits (299), Expect = 2e-032
Identities = 62/100 (62%), Positives = 71/100 (71%)
Frame = -1 / +3
Query: 813 GLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTVIS 634
G +D APLLCAGVTVYSPMM GLN PGK +AVKFGKAFGM VTVIS
Sbjct: 174 GGGVDGAAPLLCAGVTVYSPMMEFGLNAPGKHLGVVGLGGLGHMAVKFGKAFGMTVTVIS 353
Query: 633 TSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDT 514
+S KR+EA++ LGAD FL+S+ +QM AA GTMD IIDT
Sbjct: 354 SSPRKREEAVKRLGADSFLVSQYPEQMNAAAGTMDSIIDT 473
Score = 69.8 bits (146), Expect(2) = 2e-022
Identities = 35/56 (62%), Positives = 38/56 (67%)
Frame = +2 / -1
Query: 515 VSMMPSMVPVAAFIWSSSRLMRNSSAPRFSMASWRLLADVLMTVTFIPKALPNLTA 682
VSM+ SMVP AAFI S L +N SAP AS R L D L+TVT IP ALPNLTA
Sbjct: 472 VSMILSMVPAAAFICSGYWLTKNESAPSRLTASSRFLGDELITVTVIPNALPNLTA 305
Score = 56.1 bits (116), Expect(2) = 2e-022
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -1
Query: 719 CLPGSLRPWRIMGLYTVTPAQSSGAVRSSAKP 814
CLPG+LRP I+GLYTVTPAQSSGA S+ P
Sbjct: 268 CLPGALRPNSIIGLYTVTPAQSSGAAPSTPPP 173
>gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 5', mRNA sequence
Length = 546
Score = 138 bits (295), Expect = 6e-032
Identities = 53/114 (46%), Positives = 84/114 (73%)
Frame = -1 / +3
Query: 558 QMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVA 379
QM+A ++D +IDTVSA H + P+L LLK G++V+V AP KP+ELP++ ++ G + V+
Sbjct: 6 QMQAMARSLDYVIDTVSAQHSLGPILELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTVS 185
Query: 378 GNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G+ G +++ Q M++ G+HGI A++E++ D +N A+ RL +NDVRYRFV+DV
Sbjct: 186 GSMTGGMKETQEMMDLCGEHGITADIELVSTDGINDALARLARNDVRYRFVVDV 347
>gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
3-PRIME, mRNA sequence
Length = 497
Score = 138 bits (295), Expect = 6e-032
Identities = 54/94 (57%), Positives = 73/94 (77%)
Frame = -1 / -3
Query: 498 PITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKH 319
P+ PLL LLKP G+M++VG P +P+E+P +A+V K +AG+ +G +RD Q ML+ A KH
Sbjct: 489 PMAPLLGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKH 310
Query: 318 GIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G+ A++EVI +YVNTAMERL K DVRYRFVID+
Sbjct: 309 GVTADIEVISAEYVNTAMERLAKADVRYRFVIDI 208
>gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. vulgare cDNA clone HM03H06
3-PRIME, mRNA sequence
Length = 486
Score = 137 bits (294), Expect = 8e-032
Identities = 57/119 (47%), Positives = 85/119 (71%)
Frame = -1 / -2
Query: 573 SRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPLGQMVIVGAPSKPLELPAYAIVPG 394
S D DQM AA ++D IIDTV HP+ P LALLK G++V++G ++PL + ++ G
Sbjct: 485 SSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIAEPLSFVSPMVMLG 306
Query: 393 GKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
K + G+ +GS+ + + +L+F G+ +++EV+KMDYVN A+ERLE+NDVRYRFV+DV
Sbjct: 305 RKTITGSFIGSMDETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDV 129
>gb|BU999880.1|BU999880 HS17B20u HS Hordeum vulgare subsp. vulgare cDNA clone HS17B20
3-PRIME, mRNA sequence
Length = 545
Score = 84.5 bits (178), Expect(2) = 2e-031
Identities = 39/77 (50%), Positives = 50/77 (64%)
Frame = -1 / -1
Query: 642 VISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALLKPL 463
V+STS SKR EAI LGAD F++S D+ QM++ ++D I+DT S HP P LALLK
Sbjct: 545 VLSTSESKRDEAINLLGADNFVVSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVG 366
Query: 462 GQMVIVGAPSKPLELPA 412
G M +VG P + PA
Sbjct: 365 GLMALVGFPGEIRVHPA 315
Score = 71.6 bits (150), Expect(2) = 2e-031
Identities = 27/60 (45%), Positives = 41/60 (68%)
Frame = -1 / -1
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G + ++G+ G +D Q M+ F + I ++E+IK+DY+N A+ERL DVRYRFVID+
Sbjct: 302 GARTLSGSVTGGTKDTQEMINFCAANKIYPDIELIKIDYINQALERLVNRDVRYRFVIDI 123
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 136 bits (291), Expect = 2e-031
Identities = 58/82 (70%), Positives = 66/82 (80%)
Frame = -1 / -3
Query: 462 GQMVIVGAPSKPLELPAYAIVPGGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMD 283
G MV+VG + L A AI+ GK + GN V SVRDCQAML+FAGKHGI A+VEV+KMD
Sbjct: 536 GXMVVVGXXXEXLXXXAXAIIXXGKRLXGNGVXSVRDCQAMLDFAGKHGITADVEVVKMD 357
Query: 282 YVNTAMERLEKNDVRYRFVIDV 217
YVNTA+ERLEKNDVRYRFVIDV
Sbjct: 356 YVNTAVERLEKNDVRYRFVIDV 291
>gb|BJ447037.1|BJ447037 BJ447037 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15m16 5', mRNA sequence
Length = 656
Score = 135 bits (290), Expect = 3e-031
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = -1 / +3
Query: 819 PTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGMKVTV 640
P G L++ APL+CAG+TVY+PM RH +N+PGK +AVKFGKAFG+KVTV
Sbjct: 351 PDGYPLEKAAPLVCAGITVYTPMTRHNMNQPGKSLGVVGLGGLGHMAVKFGKAFGLKVTV 530
Query: 639 ISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDT 514
+STS SKR EAI LGAD F++S D+ QM++ ++D I+DT
Sbjct: 531 LSTSESKRDEAINLLGADNFVVSSDKKQMESLKSSLDFIVDT 656
>gb|BI957209.1|BI957209 HVSMEn0008C08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008C08f, mRNA sequence
Length = 651
Score = 135 bits (289), Expect = 4e-031
Identities = 63/136 (46%), Positives = 83/136 (61%)
Frame = -1 / +2
Query: 831 WSASPTGLALDRTAPLLCAGVTVYSPMMRHGLNEPGKXXXXXXXXXXXXVAVKFGKAFGM 652
W SP GL ++ APLLCAGVTVYSP+ GL PG + VK K+ G
Sbjct: 47 W*RSPPGLLPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGH 226
Query: 651 KVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAWHPITPLLALL 472
VTVIS+S KR EA+++L ADE+L+S D DQM AA ++D IDT P+ P LALL
Sbjct: 227 HVTVISSSNKKRAEAVDDLXADEYLVSSDADQMAAAADSLDYNIDTXPVKQPLEPYLALL 406
Query: 471 KPLGQMVIVGAPSKPL 424
K G+++++G +PL
Sbjct: 407 KMDGKLMLMGDIPEPL 454
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 292,275,968
Number of Sequences: 312970
Number of extensions: 3490606
Number of successful extensions: 37218
Number of sequences better than 1.0e-020: 97
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10694349706
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)