TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE060099.2|BE060099 HVSMEg0011H06f Hordeum vulgare pre-a... 363 e-100
gb|CK123665.1|CK123665 BES1824105a07 BES1824 Hordeum vulgar... 303 9e-098
gb|BF260284.3|BF260284 HVSMEf0021J12f Hordeum vulgare seedl... 269 8e-076
gb|BF254000.2|BF254000 HVSMEf0002L12f Hordeum vulgare seedl... 259 1e-068
gb|AV834569.1|AV834569 AV834569 K. Sato unpublished cDNA li... 215 6e-063
gb|CV054720.1|CV054720 BNEL112e7 Barley EST endosperm libra... 132 5e-056
gb|CV063832.1|CV063832 BNEL93f7 Barley EST endosperm librar... 132 2e-055
gb|AV916868.1|AV916868 AV916868 K. Sato unpublished cDNA li... 132 2e-052
gb|CK124077.1|CK124077 BES1824106o13 BES1824 Hordeum vulgar... 100 2e-050
gb|CA011697.1|CA011697 HT03E21r HT Hordeum vulgare subsp. v... 132 5e-050
gb|CA012675.1|CA012675 HT06B18r HT Hordeum vulgare subsp. v... 118 1e-048
gb|BG416606.2|BG416606 HVSMEk0013I06f Hordeum vulgare testa... 115 6e-046
gb|BU978492.1|BU978492 HA13G08r HA Hordeum vulgare subsp. v... 178 3e-044
gb|AV916050.1|AV916050 AV916050 K. Sato unpublished cDNA li... 94 9e-044
gb|CA006036.1|CA006036 HU05K13u HU Hordeum vulgare subsp. v... 166 4e-041
gb|AV915850.1|AV915850 AV915850 K. Sato unpublished cDNA li... 86 2e-037
gb|BE437488.1|BE437488 SFR004.C06F990621 ITEC SFR Barley Le... 138 5e-037
gb|BJ447407.1|BJ447407 BJ447407 K. Sato unpublished cDNA li... 118 1e-036
gb|BJ463449.1|BJ463449 BJ463449 K. Sato unpublished cDNA li... 122 4e-036
gb|CA031881.1|CA031881 HX11G09r HX Hordeum vulgare subsp. v... 149 1e-035
gb|BE060343.3|BE060343 HVSMEg0012A18f Hordeum vulgare pre-a... 116 2e-035
gb|AV924480.1|AV924480 AV924480 K. Sato unpublished cDNA li... 90 2e-034
gb|AV924479.1|AV924479 AV924479 K. Sato unpublished cDNA li... 90 2e-034
gb|BM098487.2|BM098487 EBem08_SQ003_D06_R embryo, 40 DPA, n... 122 9e-034
gb|BE195361.2|BE195361 HVSMEh0089A10f Hordeum vulgare 5-45 ... 94 2e-033
gb|BU989522.1|BU989522 HF21P14r HF Hordeum vulgare subsp. v... 79 3e-032
gb|BF616546.2|BF616546 HVSMEc0010G23f Hordeum vulgare seedl... 116 4e-032
gb|BG369694.1|BG369694 HVSMEi0025I17f Hordeum vulgare 20 DA... 122 2e-031
gb|BG344809.1|BG344809 HVSMEg0016C19f Hordeum vulgare pre-a... 90 1e-030
gb|BI950087.1|BI950087 HVSMEl0018H22f Hordeum vulgare spike... 105 4e-030
gb|BJ450504.1|BJ450504 BJ450504 K. Sato unpublished cDNA li... 62 7e-030
gb|CA026989.1|CA026989 HZ57I24r HZ Hordeum vulgare subsp. v... 130 9e-030
gb|CK124523.1|CK124523 BES1824109h02 BES1824 Hordeum vulgar... 105 9e-030
gb|BF260432.3|BF260432 HVSMEf0021P16f Hordeum vulgare seedl... 109 2e-029
gb|AV913885.1|AV913885 AV913885 K. Sato unpublished cDNA li... 80 2e-029
gb|BQ472612.1|BQ472612 HB01P21r BC Hordeum vulgare subsp. v... 86 3e-029
gb|BQ472874.1|BQ472874 HB01D18r BC Hordeum vulgare subsp. v... 86 3e-029
gb|AV916179.1|AV916179 AV916179 K. Sato unpublished cDNA li... 105 6e-028
gb|BU979682.1|BU979682 HA16O21r HA Hordeum vulgare subsp. v... 122 4e-027
gb|CA011901.1|CA011901 HT03N20r HT Hordeum vulgare subsp. v... 122 4e-027
gb|BE421366.1|BE421366 HWM008.E11 ITEC HWM Barley Leaf Libr... 73 5e-027
gb|BQ469784.1|BQ469784 HZ01N19r HZ Hordeum vulgare subsp. v... 117 9e-026
gb|BQ768557.1|BQ768557 EBro08_SQ012_E03_R root, 3 week, dro... 116 1e-025
gb|BU988151.1|BU988151 HF16M22r HF Hordeum vulgare subsp. v... 91 3e-025
gb|AV915769.1|AV915769 AV915769 K. Sato unpublished cDNA li... 93 7e-025
gb|BQ767779.1|BQ767779 EBro08_SQ009_G20_R root, 3 week, dro... 80 7e-025
gb|BJ464155.1|BJ464155 BJ464155 K. Sato unpublished cDNA li... 105 1e-024
gb|AV926794.1|AV926794 AV926794 K. Sato unpublished cDNA li... 105 2e-024
gb|CV055826.1|CV055826 BNEL123h3 Barley EST endosperm libra... 111 4e-024
gb|CK123916.1|CK123916 BES1824106c06 BES1824 Hordeum vulgar... 105 4e-024
gb|AL505423.1|AL505423 AL505423 Hordeum vulgare Barke roots... 105 4e-024
gb|BJ462966.1|BJ462966 BJ462966 K. Sato unpublished cDNA li... 78 8e-024
gb|BI948209.1|BI948209 HVSMEl0008J18f Hordeum vulgare spike... 84 8e-024
gb|BF622331.2|BF622331 HVSMEa0002M16f Hordeum vulgare seedl... 80 1e-023
gb|BQ459038.1|BQ459038 HA02H18r HA Hordeum vulgare subsp. v... 100 3e-023
gb|BF624269.1|BF624269 HVSMEa0013E15f Hordeum vulgare seedl... 108 4e-023
gb|BU984301.1|BU984301 HF03I21r HF Hordeum vulgare subsp. v... 108 5e-023
gb|BU977459.1|BU977459 HA11H12r HA Hordeum vulgare subsp. v... 108 5e-023
gb|CV057382.1|CV057382 BNEL27b8 Barley EST endosperm librar... 108 5e-023
gb|CV060466.1|CV060466 BNEL58d7 Barley EST endosperm librar... 108 5e-023
gb|CK125211.1|CK125211 BES1824107g08 BES1824 Hordeum vulgar... 108 5e-023
gb|CV053850.1|CV053850 BNEL103h12 Barley EST endosperm libr... 108 5e-023
gb|CV054070.1|CV054070 BNEL106d4 Barley EST endosperm libra... 108 5e-023
gb|BF255228.2|BF255228 HVSMEf0006E20f Hordeum vulgare seedl... 99 9e-023
gb|BJ447550.1|BJ447550 BJ447550 K. Sato unpublished cDNA li... 106 1e-022
gb|AW982654.1|AW982654 HVSMEg0003N16f Hordeum vulgare pre-a... 106 1e-022
gb|BE195511.3|BE195511 HVSMEh0089E06f Hordeum vulgare 5-45 ... 106 1e-022
gb|BJ465012.1|BJ465012 BJ465012 K. Sato unpublished cDNA li... 106 1e-022
gb|BI948208.1|BI948208 HVSMEl0008J16f Hordeum vulgare spike... 80 2e-022
gb|AV925147.1|AV925147 AV925147 K. Sato unpublished cDNA li... 84 2e-022
gb|BE456133.3|BE456133 HVSMEg0019P07f Hordeum vulgare pre-a... 105 3e-022
gb|AV933996.1|AV933996 AV933996 K. Sato unpublished cDNA li... 105 3e-022
gb|BG343957.1|BG343957 HVSMEg0007D17f Hordeum vulgare pre-a... 95 3e-022
gb|BQ468899.1|BQ468899 HM02L10r HM Hordeum vulgare subsp. v... 105 4e-022
gb|BQ472290.1|BQ472290 HV04P12r HV Hordeum vulgare subsp. v... 105 4e-022
gb|CA013311.1|CA013311 HT08A09r HT Hordeum vulgare subsp. v... 82 6e-022
gb|BJ465339.1|BJ465339 BJ465339 K. Sato unpublished cDNA li... 100 6e-022
gb|CA014679.1|CA014679 HT12A17r HT Hordeum vulgare subsp. v... 100 6e-022
gb|BU968719.1|BU968719 HB08G03r BC Hordeum vulgare subsp. v... 100 6e-022
gb|BJ454472.1|BJ454472 BJ454472 K. Sato unpublished cDNA li... 100 6e-022
gb|CA022858.1|CA022858 HZ44I22r HZ Hordeum vulgare subsp. v... 104 9e-022
gb|CA031709.1|CA031709 HX10O12r HX Hordeum vulgare subsp. v... 104 9e-022
gb|BG343563.2|BG343563 HVSMEg0006G10f Hordeum vulgare pre-a... 97 1e-021
gb|BU970516.1|BU970516 HB14O02r BC Hordeum vulgare subsp. v... 97 1e-021
gb|BQ767305.1|BQ767305 EBro08_SQ008_D17_R root, 3 week, dro... 97 1e-021
gb|CA009287.1|CA009287 HU13L09r HU Hordeum vulgare subsp. v... 97 1e-021
gb|BQ458577.1|BQ458577 HA04N11r HA Hordeum vulgare subsp. v... 100 2e-021
gb|BG300235.1|BG300235 HVSMEb0011L04f Hordeum vulgare seedl... 100 2e-021
gb|BU970617.1|BU970617 HB15C22r BC Hordeum vulgare subsp. v... 100 2e-021
gb|AV914074.1|AV914074 AV914074 K. Sato unpublished cDNA li... 100 2e-021
gb|BU980835.1|BU980835 HA21N10r HA Hordeum vulgare subsp. v... 100 2e-021
gb|BI952155.1|BI952155 HVSMEm0004N04f Hordeum vulgare green... 100 2e-021
gb|BM444302.1|BM444302 EBem09_SQ004_M04_R embryo, 1 Day ger... 100 2e-021
gb|BQ464579.1|BQ464579 HF02K23r HF Hordeum vulgare subsp. v... 100 2e-021
gb|CV061194.1|CV061194 BNEL66a10 Barley EST endosperm libra... 97 3e-021
gb|BU979675.1|BU979675 HA16O11r HA Hordeum vulgare subsp. v... 89 3e-021
gb|BF254653.2|BF254653 HVSMEf0004K07f Hordeum vulgare seedl... 101 4e-021
gb|BJ464645.1|BJ464645 BJ464645 K. Sato unpublished cDNA li... 101 5e-021
gb|AV913842.1|AV913842 AV913842 K. Sato unpublished cDNA li... 97 6e-021
gb|AV915313.1|AV915313 AV915313 K. Sato unpublished cDNA li... 97 6e-021
gb|BU985834.1|BU985834 HF08M10r HF Hordeum vulgare subsp. v... 101 6e-021
gb|BU978903.1|BU978903 HA14J14r HA Hordeum vulgare subsp. v... 101 6e-021
gb|BU979336.1|BU979336 HA15N06r HA Hordeum vulgare subsp. v... 101 6e-021
gb|BU986432.1|BU986432 HF11N06r HF Hordeum vulgare subsp. v... 101 6e-021
>gb|BE060099.2|BE060099 HVSMEg0011H06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011H06f, mRNA sequence
Length = 543
Score = 363 bits (787), Expect = e-100
Identities = 155/170 (91%), Positives = 162/170 (95%)
Frame = +3 / +2
Query: 75 LAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
LAKAVATEC TTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR
Sbjct: 2 LAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 181
Query: 255 GEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 434
GEARSEHEASRRLKTELLIQMDGLTKT +LVFVLAATNLPWELDAAMLRRLEKRILVPLP
Sbjct: 182 GEARSEHEASRRLKTELLIQMDGLTKTKDLVFVLAATNLPWELDAAMLRRLEKRILVPLP 361
Query: 435 EPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQP 584
E +ARH+MF+ELLP +E+PYD+LVEKTEGYSGSDIRLVCKEAAMQP
Sbjct: 362 EAEARHSMFKELLPAMTSNLEVPYDILVEKTEGYSGSDIRLVCKEAAMQP 511
Score = 251 bits (542), Expect = 5e-066
Identities = 119/170 (70%), Positives = 128/170 (75%)
Frame = -2 / -1
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXX 404
GCIAASLHTRRISEPEYPSVFST+ S G S + GRSS N+ CLAS SG+GT
Sbjct: 510 GCIAASLHTRRISEPEYPSVFSTKISYGTSRFEVIAGRSSLNMECLASASGSGTRIRFSS 331
Query: 403 XXXXXXSNSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASPR*LMIASISS 224
SNSHG+FVAA T T S V V PSI I+SSVF RRLASCSLRASPR*L+IASISS
Sbjct: 330 RRSIAASNSHGRFVAASTNTKSLVFVKPSI*ISSSVFKRRLASCSLRASPR*LIIASISS 151
Query: 223 RKIVDGA*CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATALAS 74
R IVDGA*CLA SESPRHLLTIDEAE+LK VVLHSVATALA+
Sbjct: 150 RNIVDGA*CLASSKRTLTSFSESPRHLLTIDEAEMLKNVVLHSVATALAN 1
Score = 116 bits (248), Expect = 2e-025
Identities = 57/112 (50%), Positives = 74/112 (66%)
Frame = +2 / +1
Query: 92 Y*VQNNFFQYFCLVDCKQVAR*LGETSESVIRTCKASCTIYYFP**D*CYH*STW*SS** 271
Y*VQ Q+F ++C+Q+A E S+S CK SCTI+ **D*CY+*S W*SS*
Sbjct: 19 Y*VQYYILQHFGFINCQQMAWRF*EASQSSF*ACKTSCTIHNIS**D*CYY*SAW*SS*R 198
Query: 272 T*S*PAIEN*AINTDGWVD*DR*ACFCSSSNKFTMGVGCSNAASAGEAYSCS 427
*S* +E+* +DGW+D ++ C+ SNK TMG+GCS A SA EA SC+
Sbjct: 199 A*S*STLED*TTYSDGWLDKNQRLSICACSNKSTMGIGCSYAPSA*EADSCT 354
Score = 105 bits (225), Expect(2) = 5e-026
Identities = 59/114 (51%), Positives = 68/114 (59%)
Frame = -3 / -2
Query: 423 QEYASPADAALLHPTPMVNLLLLEQKQAHLS*STHPSVLIAQFSIAG*LHVHYELHHVD* 244
QE AS AD A LHP PMV+LLL Q + S+HPS + Q S *LH YELHH D*
Sbjct: 350 QESASQADGA*LHPIPMVDLLLQAQILSLWFLSSHPSE*VVQSSSVD*LHARYELHHAD* 171
Query: 243 **HQSHQGK**MVHDALQVRITLSLVSPSHRATCLQSTRQKY*KKLFCTQ*PQL 82
**HQSHQ MVHD LQ + L L S + A C Q + K *+ +CTQ* L
Sbjct: 170 **HQSHQEILWMVHDVLQAQKEL*LASQNLHAIC*QLMKPKC*RM*YCTQ*RPL 9
Score = 31.8 bits (63), Expect(2) = 5e-026
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1 / -3
Query: 581 LHCCFLAYQANIRARISFSFLHKNIIGNL 495
LH A++ NIR R+ FS + NII +L
Sbjct: 508 LHSSLFAHKTNIRTRVPFSLFN*NIIWDL 422
>gb|CK123665.1|CK123665 BES1824105a07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A075 5-PRIME, mRNA sequence
Length = 670
Score = 303 bits (657), Expect(2) = 9e-098
Identities = 129/145 (88%), Positives = 138/145 (95%)
Frame = +3 / +1
Query: 177 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVL 356
VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKT +LVFVL
Sbjct: 16 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTKDLVFVL 195
Query: 357 AATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGY 536
AATNLPWELDAAMLRRLEKRILVPLPE +ARH+MF+ELLP +E+PYD+LVEKTEGY
Sbjct: 196 AATNLPWELDAAMLRRLEKRILVPLPEAEARHSMFKELLPAMTSNLEVPYDILVEKTEGY 375
Query: 537 SGSDIRLVCKEAAMQPLRRVMAVLE 611
SGSDIRLVCKEAAMQPLRR+M+VLE
Sbjct: 376 SGSDIRLVCKEAAMQPLRRLMSVLE 450
Score = 253 bits (547), Expect = 1e-066
Identities = 124/189 (65%), Positives = 133/189 (70%)
Frame = -2 / -3
Query: 757 LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLRGC 578
LP*SWLNFSY CA R ADGLV LKASS SS + S L SRT + RL GC
Sbjct: 596 LP*SWLNFSYRCAWRCADGLVLLKASSTSSGLRGPTSGNSSSGTSSSLASRTDMRRLNGC 417
Query: 577 IAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXXXX 398
IAASLHTRRISEPEYPSVFST+ S G S + GRSS N+ CLAS SG+GT
Sbjct: 416 IAASLHTRRISEPEYPSVFSTKISYGTSRFEVIAGRSSLNMECLASASGSGTRIRFSSRR 237
Query: 397 XXXXSNSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASPR*LMIASISSRK 218
SNSHG+FVAA T T S V V PSI I+SSVF RRLASCSLRASPR*L+IASISSR
Sbjct: 236 SIAASNSHGRFVAASTNTKSLVFVKPSI*ISSSVFKRRLASCSLRASPR*LIIASISSRN 57
Query: 217 IVDGA*CLA 191
IVDGA*CLA
Sbjct: 56 IVDGA*CLA 30
Score = 95.9 bits (203), Expect(2) = 3e-029
Identities = 45/79 (56%), Positives = 56/79 (70%)
Frame = +2 / +3
Query: 191 CKASCTIYYFP**D*CYH*STW*SS**T*S*PAIEN*AINTDGWVD*DR*ACFCSSSNKF 370
CK SCTI+ **D*CY+*S W*SS* *S* +E+* +DGW+D ++ C+ SNK
Sbjct: 30 CKTSCTIHNIS**D*CYY*SAW*SS*RA*S*STLED*TTYSDGWLDKNQRLSICACSNKS 209
Query: 371 TMGVGCSNAASAGEAYSCS 427
TMG+GCS A SA EA SC+
Sbjct: 210 TMGIGCSYAPSA*EADSCT 266
Score = 89.0 bits (188), Expect(2) = 2e-034
Identities = 46/80 (57%), Positives = 51/80 (63%)
Frame = -3 / -1
Query: 423 QEYASPADAALLHPTPMVNLLLLEQKQAHLS*STHPSVLIAQFSIAG*LHVHYELHHVD* 244
QE AS AD A LHP PMV+LLL Q + S+HPS + Q S *LH YELHH D*
Sbjct: 262 QESASQADGA*LHPIPMVDLLLQAQILSLWFLSSHPSE*VVQSSSVD*LHARYELHHAD* 83
Query: 243 **HQSHQGK**MVHDALQVR 184
**HQSHQ MVHD LQ +
Sbjct: 82 **HQSHQEILWMVHDVLQAQ 23
Score = 77.1 bits (162), Expect(2) = 2e-034
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = -1 / -2
Query: 764 DMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCHYPS* 585
+M ++LV+ F+ MC++M R C+ QSKF++ AN RQL L F+N H
Sbjct: 603 NMAPVVLVKFFIPMCLEMC*RPCVAQSKFHVVRFERANLRQLFLWHQLITGFEN*HETPQ 424
Query: 584 GLHCCFLAYQANIRARISFSFLHKNIIGNL 495
LH A++ NIR R+ FS + NII +L
Sbjct: 423 WLHSSLFAHKTNIRTRVPFSLFN*NIIWDL 334
Score = 73.9 bits (155), Expect(2) = 9e-098
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3 / +1
Query: 669 EDIELALRNTRPSAHLHAHRYEKFNQDYGSHV 764
+D+ELAL NTRPSAHL AHRYEKFNQDYGSH+
Sbjct: 508 DDVELALSNTRPSAHLQAHRYEKFNQDYGSHI 603
Score = 52.8 bits (109), Expect(2) = 3e-029
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +2 / +3
Query: 521 EN*RIFWL*YSPGMQGSSNAAPKTGNGSS*RQERRGP*G*VA*SWPSNYRRY*TCFEEYK 700
++*R+ W YS +Q AA + + SS Q G G VA* WPS R TCFE++K
Sbjct: 360 KD*RVLWFGYSSCVQRGCYAAIEASHVSSRSQ**AGARGRVA*GWPSQT*RRGTCFEQHK 539
Query: 701 TVCSSSCT*IRKVQPRL 751
V +S T + K+ P L
Sbjct: 540 AVSTSPSTSV*KI*PGL 590
>gb|BF260284.3|BF260284 HVSMEf0021J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021J12f, mRNA sequence
Length = 815
Score = 269 bits (581), Expect(2) = 8e-076
Identities = 118/132 (89%), Positives = 120/132 (90%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSP KGILLFGPPGTGKTMLAKAVATEC TTFFNISASSIV+KWRGDSEKLVK LFEL
Sbjct: 246 GLLSPRKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVTKWRGDSEKLVKGLFEL 425
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNL 371
ARHHAP TIFLDEIDAII QRGEARSEHEASRRLKTELLIQMDGLTKT +LVF LA TNL
Sbjct: 426 ARHHAPFTIFLDEIDAIIIQRGEARSEHEASRRLKTELLIQMDGLTKTKDLVFGLATTNL 605
Query: 372 PWELDAAMLRRL 407
PWELDA RL
Sbjct: 606 PWELDAVCSVRL 641
Score = 199 bits (428), Expect(3) = 1e-056
Identities = 89/124 (71%), Positives = 100/124 (80%)
Frame = -2 / -2
Query: 382 NSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASPR*LMIASISSRKIVDGA 203
NSHG+ V A T S V V PSI I+SSVF RRLASCSLRASPR*++IASISSR IV+GA
Sbjct: 616 NSHGRLVVASPNTKSLVFVKPSI*ISSSVFKRRLASCSLRASPR*IIIASISSRNIVNGA 437
Query: 202 *CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATALASIVFPVPGGPNSNMPFQG 23
*CLA SESPRHL+TIDEAE+LK VVLHSVATALA++VFPVPGGP S MPF+G
Sbjct: 436 *CLASSKRPLTSFSESPRHLVTIDEAEMLKNVVLHSVATALANMVFPVPGGPKSKMPFRG 257
Query: 22 DNRP 11
D+RP
Sbjct: 256 DSRP 245
Score = 120 bits (256), Expect(2) = 3e-031
Identities = 60/133 (45%), Positives = 81/133 (60%)
Frame = +2 / +2
Query: 14 SIITLERHITVWSTWNRKDNAS*SCGY*VQNNFFQYFCLVDCKQVAR*LGETSESVIRTC 193
S IT ERH+T WS+ NR+D+ S Y*VQ Q+F ++C Q+A E S+ C
Sbjct: 248 STITAERHLTFWSSRNREDHVGQSGRY*VQYYILQHFRFINCHQMAWRF*EASQRSF*AC 427
Query: 194 KASCTIYYFP**D*CYH*STW*SS**T*S*PAIEN*AINTDGWVD*DR*ACFCSSSNKFT 373
K SCTI+ **D*CY+ STW*SS* *S* +E+* +DGW+D ++ + +N T
Sbjct: 428 KTSCTIHNIS**D*CYYYSTW*SS*RA*S*STLED*TTYSDGWLDKNQRLSIWACNN*ST 607
Query: 374 MGVGCSNAASAGE 412
MG+GC AG+
Sbjct: 608 MGIGCRMLRPAGK 646
Score = 111 bits (237), Expect = 6e-024
Identities = 64/132 (48%), Positives = 78/132 (59%)
Frame = -3 / -3
Query: 408 PADAALLHPTPMVNLLLLEQKQAHLS*STHPSVLIAQFSIAG*LHVHYELHHVD***HQS 229
PA ++ HP PMV+ LL Q + S+HPS + Q S *LH YELHHV+***HQS
Sbjct: 642 PAGRSIRHPIPMVD*LLQAQILSLWFLSSHPSE*VVQSSSVD*LHARYELHHVE***HQS 463
Query: 228 HQGK**MVHDALQVRITLSLVSPSHRATCLQSTRQKY*KKLFCTQ*PQL*LALSFLFQVD 49
HQ *MVHD LQ + L L S + A Q ++K *+ +CTQ* L S LF D
Sbjct: 462 HQEIL*MVHDVLQAQKDL*LASQNLHAIW*QLMKRKC*RM*YCTQ*RPLWPTWSSLFLED 283
Query: 48 QTVICLSKVIID 13
Q V CLS VI+D
Sbjct: 282 QKVRCLSAVIVD 247
Score = 35.4 bits (71), Expect(2) = 3e-031
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3 / +3
Query: 492 MEIPYDVLVEKTEGYSGSDIRLVCKEAAM 578
+E PY+ L+EKT GYSGS+ L +EA +
Sbjct: 723 LEGPYEFLLEKT*GYSGSEYSLGGQEAVL 809
Score = 35.4 bits (71), Expect(2) = 8e-076
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3 / +1
Query: 426 PLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCK 566
PL E +ARH+MF+ELLP + P + ++ +G +IRL K
Sbjct: 658 PLSEAEARHSMFKELLPAWT*I*KAPMNFYWKRLKGTLVRNIRLGAK 798
Score = 33.1 bits (66), Expect(3) = 1e-056
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -2 / -2
Query: 580 CIAASLHTRRISEPEYPSVFSTRTS*GIS 494
C AS SEPEYP VFS + S*G S
Sbjct: 811 CNTASWPPSEYSEPEYP*VFSNKNS*GPS 725
Score = 27.2 bits (53), Expect(3) = 1e-056
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 475 GRSSSNIACLASGSGNG 425
GRSS N+ CLAS S +G
Sbjct: 707 GRSSLNMECLASASESG 657
>gb|BF254000.2|BF254000 HVSMEf0002L12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002L12f, mRNA sequence
Length = 852
Score = 259 bits (561), Expect = 1e-068
Identities = 112/139 (80%), Positives = 117/139 (84%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSPWKGILLFGPPGTGKTMLAKAVATEC TTF NISASSIV+KWRGDSEKLVKVLFEL
Sbjct: 436 GLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFLNISASSIVNKWRGDSEKLVKVLFEL 615
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNL 371
ARH+AP+TIFLDEIDAIISQRGEAR+EHEASRRLK ELLIQMDG K L+F LAATNL
Sbjct: 616 ARHYAPTTIFLDEIDAIISQRGEARAEHEASRRLKNELLIQMDGFAKNQGLIFGLAATNL 795
Query: 372 PWELDAAMLRRLEKRILVP 428
PWE L L P
Sbjct: 796 PWEWMQVCFVGLRNGFLAP 852
Score = 189 bits (408), Expect(2) = 6e-049
Identities = 87/124 (70%), Positives = 95/124 (76%)
Frame = -2 / -2
Query: 382 NSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSLRASPR*LMIASISSRKIVDGA 203
+SHG+FVAA S L PSI I+SS F RRLASCS RASPR*L+IASISSR IV GA
Sbjct: 806 HSHGRFVAASPNISPWFLAKPSI*ISSSFFKRRLASCSARASPR*LIIASISSRNIVVGA 627
Query: 202 *CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATALASIVFPVPGGPNSNMPFQG 23
*CLA SESPRHLLTIDEAE+ K VVLHSVATALA++VFPVPGGP S MPF G
Sbjct: 626 *CLASSKRTLTSFSESPRHLLTIDEAEMFKNVVLHSVATALANMVFPVPGGPKSKMPFHG 447
Query: 22 DNRP 11
D+RP
Sbjct: 446 DSRP 435
Score = 100 bits (212), Expect(2) = 1e-024
Identities = 49/104 (47%), Positives = 66/104 (63%)
Frame = +2 / +3
Query: 14 SIITLERHITVWSTWNRKDNAS*SCGY*VQNNFFQYFCLVDCKQVAR*LGETSESVIRTC 193
S IT+ERH+T WS+ NR+D+ S Y*VQ ++F ++C+Q+A E S+S C
Sbjct: 438 STITVERHLTFWSSRNREDHVGQSGRY*VQYYILEHFGFINCQQMAWRF*EASQSSF*AC 617
Query: 194 KASCTIYYFP**D*CYH*STW*SS**T*S*PAIEN*AINTDGWV 325
K CT + **D*CY+*STW*SS *S* +E * +DGW+
Sbjct: 618 KTLCTNHNIS**D*CYY*STW*SSCRA*S*STLEE*TTYSDGWL 749
Score = 33.1 bits (66), Expect(2) = 1e-024
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 372 PWELDAAMLRRLEKRILVP 428
P +DA MLRRLEKRIL P
Sbjct: 795 PMGMDAGMLRRLEKRILGP 851
Score = 24.9 bits (48), Expect(2) = 6e-049
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1 / -2
Query: 422 KNTLLQPTQHCCI 384
KN L+PT+H CI
Sbjct: 845 KNPFLKPTKHTCI 807
>gb|AV834569.1|AV834569 AV834569 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags3f23, mRNA sequence
Length = 643
Score = 215 bits (464), Expect = 3e-055
Identities = 87/135 (64%), Positives = 96/135 (71%)
Frame = -1 / +2
Query: 776 PLAMDMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCH 597
PL DM AIIL+EL +SMCM+MSRR CIPQSKF+I C YWANFRQL L D F AF NCH
Sbjct: 239 PLFXDMAAIILIELLISMCMEMSRRPCIPQSKFDILCRYWANFRQLILWDFFLSAF*NCH 418
Query: 596 YPS*GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQELFKHSMSSIRLWQWNKN 417
PS LHCC L +A IRA ISF LHK+II NLHC W+ELFKHSM S RLW +KN
Sbjct: 419 *PSKWLHCCLLTNKAYIRAGISFGVLHKSIIWNLHCVLSQWKELFKHSMPSFRLW*GHKN 598
Query: 416 TLLQPTQHCCIQLPW 372
T Q HCC+ PW
Sbjct: 599 TFFQSA*HCCV*FPW 643
Score = 187 bits (402), Expect = 1e-046
Identities = 86/135 (63%), Positives = 97/135 (71%)
Frame = +1 / -2
Query: 373 HGSWMQQCCVGWRSVFLFHCQSRMLDMLCLKSSCHIHLAQWRFPMMFLWRKLKDILALIF 552
HG+ QQC W++VFL Q R L MLCLKSS H QWRF MM LWR KDI ALI+
Sbjct: 642 HGN*TQQCYADWKNVFLCPYQRRKLGMLCLKSSFH*LKTQWRFHMMLLWRTPKDIPALIY 463
Query: 553 AWYARKQQCSP*DG*WQFLKAGKKRSLRVSCLKLAQ*LQKILNLL*GIQDRLLIFMHIDT 732
A + R+QQC+ DG*WQF KA KK+S R+SCLKLAQ* Q+I NLL*GI RLLI MHID
Sbjct: 462 ALFVRRQQCNHLDG*WQF*KADKKKSQRMSCLKLAQ*RQRISNLL*GIHGRLLISMHIDM 283
Query: 733 KSSTKIMAVMSMAKG 777
+SS KIMA MS KG
Sbjct: 282 RSSIKIMAAMSXNKG 238
Score = 178 bits (384), Expect = 3e-044
Identities = 81/134 (60%), Positives = 94/134 (70%)
Frame = +2 / -3
Query: 374 MGVGCSNAASAGEAYSCSIARAGC*TCYV*RAPAIYTWHNGDSL*CSCGEN*RIFWL*YS 553
MG SN G+ YSC++ R G * CYV*R P+I + HNGDS+*CSCGE+ RIF L*Y+
Sbjct: 641 MGTRRSNVTPIGKTYSCALTRGGS*ACYV*RVPSIDSRHNGDSI*CSCGEHRRIFRL*YT 462
Query: 554 PGMQGSSNAAPKTGNGSS*RQERRGP*G*VA*SWPSNYRRY*TCFEEYKTVCSSSCT*IR 733
P + G SNA T NGSS RQ RR P G*VA*SWP++ R Y TC EEY VCSS CT*I
Sbjct: 461 PCL*GGSNATT*TVNGSSRRQTRRNPRG*VA*SWPNSDRGYRTCSEEYTAVCSSPCT*I* 282
Query: 734 KVQPRLWQSCPWLK 775
+VQ RLWQ C +K
Sbjct: 281 EVQSRLWQPCXQIK 240
Score = 174 bits (375), Expect(2) = 6e-063
Identities = 73/83 (87%), Positives = 76/83 (91%)
Frame = +3 / -1
Query: 372 PWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDI 551
PWELDAAMLRRLEKRILVPLPE +ARHAMFEE LP T TMEIPYD LVE TEGYSGSDI
Sbjct: 643 PWELDAAMLRRLEKRILVPLPEAEARHAMFEEFLPLTQDTMEIPYDALVENTEGYSGSDI 464
Query: 552 RLVCKEAAMQPLRRVMAVLEGRK 620
RLVCKEAAMQPLRR+MAVLEGR+
Sbjct: 463 RLVCKEAAMQPLRRLMAVLEGRQ 395
Score = 169 bits (364), Expect = 2e-041
Identities = 86/130 (66%), Positives = 89/130 (68%)
Frame = -2 / +3
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*S LNFSYLCA R*ADG VFL+ASSISSV S LPSRTAI RL
Sbjct: 252 TWLP*S*LNFSYLCAWR*ADGRVFLRASSISSVAIGPTSGNSSSGISSCLPSRTAINRLS 431
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGRSSSNIACLASGSGNGTXXXXXX 404
GCIAASL TRRISEPEYPSVFSTR S GISIV V GR+SSNIACLAS SG GT
Sbjct: 432 GCIAASLQTRRISEPEYPSVFSTRASYGISIVS*VNGRNSSNIACLASASGKGTRIRFSN 611
Query: 403 XXXXXXSNSH 374
S+SH
Sbjct: 612 RRNIAASSSH 641
Score = 86.8 bits (183), Expect(2) = 6e-063
Identities = 36/40 (90%), Positives = 36/40 (90%)
Frame = +3 / -1
Query: 666 TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*RGEA 785
TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHV *R A
Sbjct: 349 TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVXK*RWAA 230
Score = 80.3 bits (169), Expect(2) = 2e-027
Identities = 36/61 (59%), Positives = 38/61 (62%)
Frame = -3 / +1
Query: 555 GEYQSQNILQFSPQEHHRESPLCQVYMAGALQT*HV*HPALAMEQEYASPADAALLHPTP 376
G YQS+NIL+ SPQEHH ESPLC M G LQT*H * P L QEY P LL P
Sbjct: 460 GVYQSRNILRCSPQEHHMESPLCLESMEGTLQT*HA*LPPLVRAQEYVFPIGVTLLRLVP 639
Query: 375 M 373
M
Sbjct: 640 M 642
Score = 62.0 bits (129), Expect(2) = 2e-027
Identities = 29/53 (54%), Positives = 31/53 (58%)
Frame = -3 / +1
Query: 762 HDCHNLG*TFRIYVHEDEQTVLYSSKXXXXXXXXXXXXQATHPQGPLLSCLQE 604
H CHNL *T IYVH DEQT +YSS+ QATHP G LL CL E
Sbjct: 253 HGCHNLD*TSHIYVHGDEQTAVYSSEQVRYPLSLLGQLQATHPLGFLLVCLLE 411
>gb|CV054720.1|CV054720 BNEL112e7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112e7 5' similar to
AAA-ATPase-like protein, mRNA sequence
Length = 702
Score = 132 bits (283), Expect(3) = 5e-056
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 127 GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 306
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR +APS IF+DEID++ RGE + R
Sbjct: 307 ARENAPSIIFIDEIDSLCGTRGEGNESEASRR 402
Score = 93.6 bits (198), Expect(3) = 5e-056
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 379 NESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDAKA 558
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP ++
Sbjct: 559 RQHMFKVHLGDTPHSL 606
Score = 30.9 bits (61), Expect(3) = 5e-056
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3 / +1
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPL 587
E +VL +T G+SGSD+ + K+ +P+
Sbjct: 610 ESDXEVLGRRTRGFSGSDVAVCVKDVLFEPV 702
>gb|CV063832.1|CV063832 BNEL93f7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL93f7 5' similar to
AAA-ATPase-like protein, mRNA sequence
Length = 703
Score = 132 bits (283), Expect(3) = 2e-055
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 127 GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 306
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR +APS IF+DEID++ RGE + R
Sbjct: 307 ARENAPSIIFIDEIDSLCGTRGEGNESEASRR 402
Score = 93.2 bits (197), Expect(3) = 2e-055
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 379 NESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDAKA 558
Query: 447 RHAMFEELLPYTP 485
R MF+ L TP
Sbjct: 559 RQHMFKVHLGDTP 597
Score = 29.0 bits (57), Expect(3) = 2e-055
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3 / +1
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPL 587
++VL +TEG+S SD+ + K+ +P+
Sbjct: 619 FEVLGRRTEGFSVSDVAVCGKDVLFEPV 702
>gb|AV916868.1|AV916868 AV916868 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o15 5', mRNA sequence
Length = 590
Score = 132 bits (283), Expect(2) = 2e-052
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 74 GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 253
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR +APS IF+DEID++ RGE + R
Sbjct: 254 ARENAPSIIFIDEIDSLCGTRGEGNESEASRR 349
Score = 93.6 bits (198), Expect(2) = 2e-052
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 326 NESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDAKA 505
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP ++
Sbjct: 506 RQHMFKVHLGDTPHSL 553
>gb|CK124077.1|CK124077 BES1824106o13 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O136 5-PRIME, mRNA sequence
Length = 752
Score = 100 bits (213), Expect(3) = 2e-050
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSI 137
GLLSPWKGILLFGPPGTGKTMLAKAVATEC TTFFNISASSI
Sbjct: 449 GLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSI 574
Score = 95.9 bits (203), Expect(3) = 2e-050
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +3 / +3
Query: 138 VSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRG 257
VSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRG
Sbjct: 576 VSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRG 695
Score = 84.9 bits (179), Expect(3) = 2e-034
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = -2 / -3
Query: 136 IDEAEILKKVVLHSVATALASIVFPVPGGPNSNMPFQGDNRP 11
IDEAE+LK VVLHSVATALA++VFPVPGGP S MPF GD+RP
Sbjct: 573 IDEAEMLKNVVLHSVATALANMVFPVPGGPKSKMPFHGDSRP 448
Score = 62.9 bits (131), Expect(3) = 2e-034
Identities = 30/41 (73%), Positives = 31/41 (75%)
Frame = -2 / -2
Query: 259 SPR*LMIASISSRKIVDGA*CLAXXXXXXXXXSESPRHLLT 137
SPR*L+IASISSR IVDGA*CLA SESPRHLLT
Sbjct: 697 SPR*LIIASISSRNIVDGA*CLASSKRTLTSFSESPRHLLT 575
Score = 41.8 bits (85), Expect(3) = 2e-050
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3 / +2
Query: 255 GEARSEHEASRRLKTELLIQ 314
G RSEHEASRRLKTELLIQ
Sbjct: 692 GGXRSEHEASRRLKTELLIQ 751
Score = 36.3 bits (73), Expect(3) = 2e-034
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 310 INSSVFNRRLASCSLRASP 254
I+SSVF RRLASCSLR P
Sbjct: 747 ISSSVFKRRLASCSLRXPP 691
>gb|CA011697.1|CA011697 HT03E21r HT Hordeum vulgare subsp. vulgare cDNA clone HT03E21
5-PRIME, mRNA sequence
Length = 582
Score = 132 bits (283), Expect(2) = 5e-050
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 140 GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 319
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR +APS IF+DEID++ RGE + R
Sbjct: 320 ARENAPSIIFIDEIDSLCGTRGEGNESEASRR 415
Score = 85.8 bits (181), Expect(2) = 5e-050
Identities = 36/61 (59%), Positives = 46/61 (75%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 392 NESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDAKA 571
Query: 447 R 449
R
Sbjct: 572 R 574
>gb|CA012675.1|CA012675 HT06B18r HT Hordeum vulgare subsp. vulgare cDNA clone HT06B18
5-PRIME, mRNA sequence
Length = 700
Score = 118 bits (252), Expect(3) = 1e-048
Identities = 47/82 (57%), Positives = 62/82 (75%)
Frame = +3 / +2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
L P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF LA
Sbjct: 11 LKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAA 190
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
+P+ IF+DE+D+++ QR A
Sbjct: 191 KVSPTIIFVDEVDSMLGQRNRA 256
Score = 85.4 bits (180), Expect(3) = 1e-048
Identities = 38/92 (41%), Positives = 57/92 (61%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L++ D+ + VLAATN P++LD A++RR E+RI+V LP R + LL +
Sbjct: 317 LSRPDQKILVLAATNRPFDLDEAIIRRFERRIMVGLPSVQNREMIMRRLLSKEKVDEGLD 496
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
Y L TEGYSGSD++ +C AA +P+R ++
Sbjct: 497 YKELGTITEGYSGSDLKNLCTTAAYRPVRELI 592
Score = 28.6 bits (56), Expect(3) = 1e-048
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 260 EHEAMRKIKNEFMTHWDGL 316
>gb|BG416606.2|BG416606 HVSMEk0013I06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0013I06f, mRNA sequence
Length = 679
Score = 115 bits (245), Expect(3) = 6e-046
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LL P KG+LLFGPPGT KT+LAKA+ATE F +I+ S++ SKW GD+EKL K LF A
Sbjct: 17 LLRPCKGVLLFGPPGTRKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFA 196
Query: 195 RHHAPSTIFLDEIDAIISQRGEA 263
AP IF+DE+D+++ RG A
Sbjct: 197 SRLAPVIIFVDEVDSLLGARGGA 265
Score = 80.3 bits (169), Expect(3) = 6e-046
Identities = 33/91 (36%), Positives = 59/91 (64%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
+K ++ + +L ATN P++LD A++RRL +RI V LP+ + R+ + + LL + +
Sbjct: 329 SKENQRILILGATNRPFDLDDAVIRRLPRRIYVGLPDAENRNKILKILLAKENIESDFKF 508
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D L TEGYSGSD++ +C +A +P++ ++
Sbjct: 509 DELANATEGYSGSDLKNLCIASAYRPVQELL 601
Score = 27.6 bits (54), Expect(3) = 6e-046
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA+R+++ E + DGL
Sbjct: 269 EHEATRKMRNEFMAAWDGL 325
>gb|BU978492.1|BU978492 HA13G08r HA Hordeum vulgare subsp. vulgare cDNA clone HA13G08
5-PRIME, mRNA sequence
Length = 544
Score = 178 bits (384), Expect = 3e-044
Identities = 74/75 (98%), Positives = 74/75 (98%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSPWKGILLFGPPGTGKTMLAKAVATEC TTFFNISASSIVSKWRGDSEKLVKVLFEL
Sbjct: 319 GLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFEL 498
Query: 192 ARHHAPSTIFLDEID 236
ARHHAPSTIFLDEID
Sbjct: 499 ARHHAPSTIFLDEID 543
Score = 131 bits (280), Expect = 7e-030
Identities = 57/75 (76%), Positives = 61/75 (81%)
Frame = -2 / -3
Query: 235 SISSRKIVDGA*CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATALASIVFPVP 56
SISSR IVDGA*CLA SESPRHLLTIDEAE+LK VVLHSVATALA++VFPVP
Sbjct: 542 SISSRNIVDGA*CLASSKRTLTSFSESPRHLLTIDEAEMLKNVVLHSVATALANMVFPVP 363
Query: 55 GGPNSNMPFQGDNRP 11
GGP S MPF GD+RP
Sbjct: 362 GGPKSKMPFHGDSRP 318
>gb|AV916050.1|AV916050 AV916050 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1e02 5', mRNA sequence
Length = 552
Score = 93.6 bits (198), Expect(4) = 9e-044
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 197 NESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDAKA 376
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP ++
Sbjct: 377 RQHMFKVHLGDTPHSL 424
Score = 52.4 bits (108), Expect(4) = 9e-044
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +3 / +1
Query: 75 LAKAVATECKTTFFNISASSIVSKWRGDSE 164
LAKAVATE +TFF+IS+S +VSKW G+SE
Sbjct: 7 LAKAVATEADSTFFSISSSDLVSKWMGESE 96
Score = 49.2 bits (101), Expect(4) = 9e-044
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +3 / +2
Query: 159 SEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
+ KLV LF++AR +APS IF+DEID++ RGE + R
Sbjct: 92 AXKLVANLFQMARENAPSIIFIDEIDSLCGTRGEGNESEASRR 220
Score = 38.2 bits (77), Expect(4) = 9e-044
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3 / +2
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRR 593
E ++VL +TEG+SGSD+ + K+ +P+R+
Sbjct: 428 ESDFEVLGRRTEGFSGSDVAVCVKDVLFEPVRK 526
>gb|CA006036.1|CA006036 HU05K13u HU Hordeum vulgare subsp. vulgare cDNA clone HU05K13
3-PRIME, mRNA sequence
Length = 483
Score = 166 bits (357), Expect = 2e-040
Identities = 68/103 (66%), Positives = 76/103 (73%)
Frame = -1 / +3
Query: 779 SPLAMDMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNC 600
+PLA DM AIIL+EL +SMCM+MSRR CIPQSKF+I C YWANFRQL L D F AF NC
Sbjct: 174 APLAEDMAAIILIELLISMCMEMSRRPCIPQSKFDILCRYWANFRQLILWDFFLSAF*NC 353
Query: 599 HYPS*GLHCCFLAYQANIRARISFSFLHKNIIGNLHCARCIWQ 471
H PS LHCC L +A IRA ISF LHK+II NLHC W+
Sbjct: 354 H*PSKWLHCCLLTNKAYIRAGISFGVLHKSIIWNLHCVSSQWK 482
Score = 148 bits (317), Expect = 5e-035
Identities = 67/96 (69%), Positives = 75/96 (78%)
Frame = +1 / -3
Query: 490 QWRFPMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRSLRVSCLKLAQ*LQ 669
QWRF MM LWR KDI ALI+A + R+QQC+ DG*WQF KA KK+S R+SCLKLAQ* Q
Sbjct: 463 QWRFHMMLLWRTPKDIPALIYALFVRRQQCNHLDG*WQF*KADKKKSQRMSCLKLAQ*RQ 284
Query: 670 KILNLL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKG 777
+I NLL*GI RLLI MHID +SS KIMA MS AKG
Sbjct: 283 RISNLL*GIHGRLLISMHIDMRSSIKIMAAMSSAKG 176
Score = 146 bits (314), Expect = 1e-034
Identities = 67/102 (65%), Positives = 76/102 (74%)
Frame = +2 / -1
Query: 470 PAIYTWHNGDSL*CSCGEN*RIFWL*YSPGMQGSSNAAPKTGNGSS*RQERRGP*G*VA* 649
P+I + HNGDS+*CSCGE+ RIF L*Y+P + G SNA T NGSS RQ RR P G*VA*
Sbjct: 483 PSIDSRHNGDSI*CSCGEHRRIFRL*YTPCL*GGSNATT*TVNGSSRRQTRRNPRG*VA* 304
Query: 650 SWPSNYRRY*TCFEEYKTVCSSSCT*IRKVQPRLWQSCPWLK 775
SWP++ R Y TC EEY VCSS CT*I +VQ RLWQ CP LK
Sbjct: 303 SWPNSDRGYRTCSEEYTAVCSSPCT*I*EVQSRLWQPCPQLK 178
Score = 138 bits (297), Expect = 3e-032
Identities = 70/98 (71%), Positives = 71/98 (72%)
Frame = -2 / +1
Query: 763 T*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSRTAITRLR 584
T LP*S LNFSYLCA R*ADG VFL+ASSISSV S LPSRTAI RL
Sbjct: 190 TWLP*S*LNFSYLCAWR*ADGRVFLRASSISSVAIGPTSGNSSSGISSCLPSRTAINRLS 369
Query: 583 GCIAASLHTRRISEPEYPSVFSTRTS*GISIVPGVYGR 470
GCIAASL TRRISEPEYPSVFSTR S GISIV V GR
Sbjct: 370 GCIAASLQTRRISEPEYPSVFSTRASYGISIVSRVNGR 483
Score = 102 bits (217), Expect(2) = 4e-041
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +3 / -2
Query: 471 LPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
LP T TMEIPYD LVE TEGYSGSDIRLVCKEAAMQPLRR+MAVLEGR+
Sbjct: 482 LPLTRDTMEIPYDALVENTEGYSGSDIRLVCKEAAMQPLRRLMAVLEGRQ 333
Score = 86.3 bits (182), Expect(2) = 4e-041
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +3 / -2
Query: 666 TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*R 776
TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHV *R
Sbjct: 287 TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVLS*R 177
>gb|AV915850.1|AV915850 AV915850 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16e05 5', mRNA sequence
Length = 625
Score = 86.3 bits (182), Expect(3) = 2e-037
Identities = 35/67 (52%), Positives = 47/67 (70%)
Frame = +3 / +1
Query: 63 GKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAI 242
GKT+LAKA+ATE F +I+ S++ SKW GD+EKL K LF A AP IF+DE+D++
Sbjct: 4 GKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRLAPVIIFVDEVDSL 183
Query: 243 ISQRGEA 263
+ RG A
Sbjct: 184 LGARGGA 204
Score = 80.3 bits (169), Expect(3) = 2e-037
Identities = 33/91 (36%), Positives = 59/91 (64%)
Frame = +3 / +1
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
+K ++ + +L ATN P++LD A++RRL +RI V LP+ + R+ + + LL + +
Sbjct: 268 SKENQRILILGATNRPFDLDDAVIRRLPRRIYVGLPDAENRNKILKILLAKENIESDFKF 447
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D L TEGYSGSD++ +C +A +P++ ++
Sbjct: 448 DELANATEGYSGSDLKNLCIASAYRPVQELL 540
Score = 27.6 bits (54), Expect(3) = 2e-037
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA+R+++ E + DGL
Sbjct: 208 EHEATRKMRNEFMAAWDGL 264
>gb|BE437488.1|BE437488 SFR004.C06F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 535
Score = 138 bits (295), Expect(2) = 5e-037
Identities = 58/85 (68%), Positives = 63/85 (74%)
Frame = -1 / -2
Query: 776 PLAMDMTAIILVELFVSMCMKMSRRSCIPQSKFNIFCSYWANFRQLTLRDLFFPAFKNCH 597
PLA DM AIIL+EL +SMCM+MSRR CIPQSKF+I C YWANFRQL L D F AF NCH
Sbjct: 300 PLAEDMAAIILIELLISMCMEMSRRPCIPQSKFDILCRYWANFRQLILWDFFLSAF*NCH 121
Query: 596 YPS*GLHCCFLAYQANIRARISFSF 522
PS LHCC L +A IRA IS F
Sbjct: 120 *PSKWLHCCLLTNKAYIRAGISSVF 46
Score = 123 bits (263), Expect = 1e-027
Identities = 59/92 (64%), Positives = 68/92 (73%)
Frame = +1 / +2
Query: 502 PMMFLWRKLKDILALIFAWYARKQQCSP*DG*WQFLKAGKKRSLRVSCLKLAQ*LQKILN 681
P L +DI ALI+A + R+QQC+ DG*WQF KA KK+S R+SCLKLAQ* Q+I N
Sbjct: 26 PYDALVENTEDIPALIYALFVRRQQCNHLDG*WQF*KADKKKSQRMSCLKLAQ*RQRISN 205
Query: 682 LL*GIQDRLLIFMHIDTKSSTKIMAVMSMAKG 777
LL*GI RLLI MHID +SS KIMA MS AKG
Sbjct: 206 LL*GIHGRLLISMHIDMRSSIKIMAAMSSAKG 301
Score = 113 bits (241), Expect(2) = 2e-028
Identities = 53/82 (64%), Positives = 59/82 (71%)
Frame = +2 / +3
Query: 530 RIFWL*YSPGMQGSSNAAPKTGNGSS*RQERRGP*G*VA*SWPSNYRRY*TCFEEYKTVC 709
+IF L*Y+P + G SNA T NGSS RQ RR P G*VA*SWP++ R Y TC EEY VC
Sbjct: 54 KIFRL*YTPCL*GGSNATT*TVNGSSRRQTRRNPRG*VA*SWPNSDRGYRTCSEEYTAVC 233
Query: 710 SSSCT*IRKVQPRLWQSCPWLK 775
SS CT*I +VQ RLWQ CP LK
Sbjct: 234 SSPCT*I*EVQSRLWQPCPQLK 299
Score = 109 bits (232), Expect(2) = 2e-027
Identities = 57/84 (67%), Positives = 59/84 (70%)
Frame = -2 / -3
Query: 784 ASPL*PWT*LP*SWLNFSYLCA*R*ADGLVFLKASSISSVVXXXXXXXXXXXXXSFLPSR 605
A+ L* T LP*S LNFSYLCA R*ADG VFL+ASSISSV S LPSR
Sbjct: 308 AAHL*LRTWLP*S*LNFSYLCAWR*ADGRVFLRASSISSVAIGPTSGNSSSGISSCLPSR 129
Query: 604 TAITRLRGCIAASLHTRRISEPEY 533
TAI RL GCIAASL TRRISEPEY
Sbjct: 128 TAINRLSGCIAASLQTRRISEPEY 57
Score = 86.8 bits (183), Expect(3) = 2e-035
Identities = 36/40 (90%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 666 TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVHG*RGEA 785
TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHV *R A
Sbjct: 190 TEDIELALRNTRPSAHLHAHRYEKFNQDYGSHVLS*RWAA 309
Score = 65.7 bits (137), Expect(3) = 2e-035
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +3 / +1
Query: 534 YSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
YSGSDIRLVCKEAAMQPLRR+MAVLEGR+
Sbjct: 58 YSGSDIRLVCKEAAMQPLRRLMAVLEGRQ 144
Score = 36.8 bits (74), Expect(2) = 5e-037
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 531 LQFSPQEHHRESPLC 487
L+ SPQEHHRESPLC
Sbjct: 56 LRCSPQEHHRESPLC 12
Score = 35.0 bits (70), Expect(3) = 2e-035
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2 / +1
Query: 488 HNGDSL*CSCGEN*R 532
HNGDSL*CSCGE+ R
Sbjct: 13 HNGDSL*CSCGEHRR 57
Score = 33.6 bits (67), Expect(2) = 2e-027
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1 / -1
Query: 557 QANIRARISFSFLHKNIIGNLHC 489
Q ++R F LHK+IIGNLHC
Sbjct: 82 QGVYQSRNIFGVLHKSIIGNLHC 14
Score = 32.7 bits (65), Expect(2) = 2e-028
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 490 QWRFPMMFLWRKLK 531
QWRFPMM LWR K
Sbjct: 15 QWRFPMMLLWRTPK 56
>gb|BJ447407.1|BJ447407 BJ447407 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35g05 5', mRNA sequence
Length = 635
Score = 118 bits (253), Expect(3) = 1e-036
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +3 / +1
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LL P KG+LLFGPPGTGKT+LAKA+ATE F +I+ S++ SKW GD+EKL K LF A
Sbjct: 208 LLRPCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFA 387
Query: 195 RHHAPSTIFLDEIDAIISQRGEA 263
AP IF+DE+D+++ RG A
Sbjct: 388 SRLAPVIIFVDEVDSLLGARGGA 456
Score = 45.1 bits (92), Expect(3) = 1e-036
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +3 / +1
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPE 437
+K ++ + +L ATN P++LD A++RRL +RI V LP+
Sbjct: 520 SKENQRILILGATNRPFDLDDAVIRRLPRRIYVGLPD 630
Score = 27.6 bits (54), Expect(3) = 1e-036
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA+R+++ E + DGL
Sbjct: 460 EHEATRKMRNEFMAAWDGL 516
>gb|BJ463449.1|BJ463449 BJ463449 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27m14 5', mRNA sequence
Length = 437
Score = 122 bits (261), Expect(3) = 4e-036
Identities = 52/80 (65%), Positives = 60/80 (75%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L+ P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 53 LMKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIGSKWFGEGEKYVKAVFSLA 232
Query: 195 RHHAPSTIFLDEIDAIISQR 254
APS IF+DE+D ++ +R
Sbjct: 233 SKIAPSVIFVDEVDGMLGRR 292
Score = 34.1 bits (68), Expect(3) = 4e-036
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E EHEA R++K E ++ DGL D+
Sbjct: 287 RRENPGEHEAMRKMKNEFMVNWDGLRTKDK 376
Score = 33.1 bits (66), Expect(3) = 4e-036
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAML 398
TK E V VLAATN P++LD A++
Sbjct: 365 TKDKERVLVLAATNRPFDLDEAVI 436
>gb|CA031881.1|CA031881 HX11G09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11G09
5-PRIME, mRNA sequence
Length = 620
Score = 149 bits (321), Expect = 1e-035
Identities = 62/63 (98%), Positives = 62/63 (98%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSPWKGILLFGPPGTGKTMLAKAVATEC TTFFNISASSIVSKWRGDSEKLVKVLFEL
Sbjct: 432 GLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFEL 611
Query: 192 ARH 200
ARH
Sbjct: 612 ARH 620
Score = 110 bits (234), Expect = 1e-023
Identities = 46/63 (73%), Positives = 50/63 (79%)
Frame = -2 / -2
Query: 199 CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATALASIVFPVPGGPNSNMPFQGD 20
CLA SESPRHLLTIDEAE+LK VVLHSVATALA++VFPVPGGP S MPF GD
Sbjct: 619 CLASSKRTLTSFSESPRHLLTIDEAEMLKNVVLHSVATALANMVFPVPGGPKSKMPFHGD 440
Query: 19 NRP 11
+RP
Sbjct: 439 SRP 431
>gb|BE060343.3|BE060343 HVSMEg0012A18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012A18f, mRNA sequence
Length = 710
Score = 116 bits (247), Expect(3) = 2e-035
Identities = 45/80 (56%), Positives = 60/80 (75%)
Frame = +3 / +3
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LLSP KG+LL+GPPGTGKTMLAKA+A E F N+ S+++SKW GD++KLV +F LA
Sbjct: 54 LLSPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVSAVFSLA 233
Query: 195 RHHAPSTIFLDEIDAIISQR 254
P+ IF+DE+D+ + QR
Sbjct: 234 NKLQPAIIFIDEVDSFLGQR 293
Score = 46.9 bits (96), Expect(3) = 2e-035
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +3 / +3
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
T + V VLAATN P ELD A L R + + +P R +L I Y
Sbjct: 363 TDQNARVMVLAATNRPXELDEAXLXRFTQIFEIGVPSRSERSKXTXVILXGENVESNIDY 542
Query: 507 DVLVEKTEGYSGSDIRLVCKEAA 575
+ + EG++ SD +C+ AA
Sbjct: 543 EYIASLCEGFTWSDXLELCRXAA 611
Score = 24.9 bits (48), Expect(3) = 2e-035
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGLT 329
++HEA +KTE + DG T
Sbjct: 300 TDHEALTNMKTEFMSLWDGFT 362
>gb|AV924480.1|AV924480 AV924480 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14l20 5', mRNA sequence
Length = 604
Score = 90.4 bits (191), Expect(3) = 2e-034
Identities = 39/89 (43%), Positives = 58/89 (65%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+K+ E + VLAATN P++LD A++RR E+RI+V LP ++R + +L +I
Sbjct: 248 LSKSGERILVLAATNRPFDLDEAIIRRFERRIMVGLPTQESRELILRTVLSKEKVDKDIE 427
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
Y L TEGYSGSD++ +C AA +P+R
Sbjct: 428 YKELATMTEGYSGSDLKNLCVTAAYRPVR 514
Score = 66.6 bits (139), Expect(3) = 2e-034
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = +3 / +2
Query: 90 ATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
A + +F N+S S+I SKW G+ EK V+ LF LA AP+ IF+DE+D+++ QR
Sbjct: 14 ANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQR 178
Score = 27.2 bits (53), Expect(3) = 2e-034
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DG+
Sbjct: 191 EHEAMRKIKNEFMSHWDGI 247
>gb|AV924479.1|AV924479 AV924479 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14l19 5', mRNA sequence
Length = 584
Score = 90.4 bits (191), Expect(3) = 2e-034
Identities = 39/89 (43%), Positives = 58/89 (65%)
Frame = +3 / +3
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+K+ E + VLAATN P++LD A++RR E+RI+V LP ++R + +L +I
Sbjct: 237 LSKSGERILVLAATNRPFDLDEAIIRRFERRIMVGLPTQESRELILRTVLSKEKVDKDIE 416
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
Y L TEGYSGSD++ +C AA +P+R
Sbjct: 417 YKELATMTEGYSGSDLKNLCVTAAYRPVR 503
Score = 66.6 bits (139), Expect(3) = 2e-034
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = +3 / +3
Query: 90 ATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
A + +F N+S S+I SKW G+ EK V+ LF LA AP+ IF+DE+D+++ QR
Sbjct: 3 ANDAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQR 167
Score = 27.2 bits (53), Expect(3) = 2e-034
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DG+
Sbjct: 180 EHEAMRKIKNEFMSHWDGI 236
>gb|BM098487.2|BM098487 EBem08_SQ003_D06_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_D06 5', mRNA sequence
Length = 524
Score = 122 bits (262), Expect(3) = 9e-034
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P +GILLFGPPGTGKTMLAKA+A E + +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 148 GLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTL 327
Query: 192 ARHHAPSTIFLDEIDAIISQRGEA 263
A +P+ IF+DE+D+++ QR A
Sbjct: 328 AAKVSPTIIFVDEVDSMLGQRNRA 399
Score = 30.4 bits (60), Expect(3) = 9e-034
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 324 LTKTDELVFVLAATNLPWELD 386
L++ D+ + VLAATN P++LD
Sbjct: 460 LSRPDQKILVLAATNRPFDLD 522
Score = 28.6 bits (56), Expect(3) = 9e-034
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 403 EHEAMRKIKNEFMTHWDGL 459
>gb|BE195361.2|BE195361 HVSMEh0089A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089A10f, mRNA sequence
Length = 982
Score = 93.6 bits (198), Expect(3) = 2e-033
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 100 NESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDAKA 279
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP ++
Sbjct: 280 RQHMFKVHLGDTPHSL 327
Score = 49.2 bits (101), Expect(3) = 2e-033
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +3 / +1
Query: 165 KLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
KLV LF++AR +APS IF+DEID++ RGE + R
Sbjct: 1 KLVANLFQMARENAPSIIFIDEIDSLCGTRGEGNESEASRR 123
Score = 38.2 bits (77), Expect(3) = 2e-033
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3 / +1
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRR 593
E ++VL +TEG+SGSD+ + K+ +P+R+
Sbjct: 331 ESDFEVLGRRTEGFSGSDVAVCVKDVLFEPVRK 429
>gb|BU989522.1|BU989522 HF21P14r HF Hordeum vulgare subsp. vulgare cDNA clone HF21P14
5-PRIME, mRNA sequence
Length = 659
Score = 79.4 bits (167), Expect(3) = 3e-032
Identities = 34/91 (37%), Positives = 54/91 (59%)
Frame = +3 / +3
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
TK E V VL ATN P++LD A++RR +R++V LP+ R + + +L +
Sbjct: 225 TKDKERVLVLGATNRPFDLDEAVIRRFPRRLMVNLPDASNREKILKVILAKEELGQDTDL 404
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
+ L T+GYSGSD++ +C AA P+R ++
Sbjct: 405 ESLANMTDGYSGSDLKNLCVTAAHYPIREIL 497
Score = 63.4 bits (132), Expect(3) = 3e-032
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +3 / +3
Query: 117 NISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
NIS SSI SKW G+ EK VK +F LA +PS IF+DE+D+++ +R
Sbjct: 15 NISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFIDEVDSMLGRR 152
Score = 34.1 bits (68), Expect(3) = 3e-032
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3 / +3
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E EHEA R++K E ++ DGL D+
Sbjct: 147 RRENPGEHEAMRKMKNEFMVNWDGLRTKDK 236
>gb|BF616546.2|BF616546 HVSMEc0010G23f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010G23f, mRNA sequence
Length = 745
Score = 116 bits (247), Expect(3) = 4e-032
Identities = 45/80 (56%), Positives = 60/80 (75%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LLSP KG+LL+GPPGTGKTMLAKA+A E F N+ S+++SKW GD++KLV +F LA
Sbjct: 245 LLSPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVSAVFSLA 424
Query: 195 RHHAPSTIFLDEIDAIISQR 254
P+ IF+DE+D+ + QR
Sbjct: 425 NKLQPAIIFIDEVDSFLGQR 484
Score = 35.4 bits (71), Expect(3) = 4e-032
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
T + V VLAATN P ELD A+LRR + + +P + + +L I Y
Sbjct: 554 TDQNARVMVLAATNRPSELDEAILRRFTQIFEIGVPSRREGSKILQVILEGKDVESNIGY 733
Query: 507 DVL 515
+ L
Sbjct: 734 EYL 742
Score = 24.9 bits (48), Expect(3) = 4e-032
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLT 329
++HEA +KTE + DG T
Sbjct: 491 TDHEALTNMKTEFMSLWDGFT 553
>gb|BG369694.1|BG369694 HVSMEi0025I17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025I17f, mRNA sequence
Length = 692
Score = 122 bits (260), Expect(2) = 2e-031
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / +1
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 301 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 480
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 481 SKISPSVIFIDEVDSMLGRR 540
Score = 34.1 bits (68), Expect(2) = 2e-031
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E EHEA R++K E ++ DGL D+
Sbjct: 535 RRENPGEHEAMRKMKNEFMVNWDGLRTKDK 624
>gb|BG344809.1|BG344809 HVSMEg0016C19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016C19f, mRNA sequence
Length = 661
Score = 90.0 bits (190), Expect(3) = 1e-030
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 200 NESEASRRIKTELLVQMQGVGHNDDKDLVLAATNTPYALDQAVPRRFDKRIYIPLPDAKA 379
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP ++
Sbjct: 380 RQHMFKVHLGDTPHSL 427
Score = 53.8 bits (111), Expect(3) = 1e-030
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3 / +2
Query: 135 IVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
I + G+S+KLV LF++AR APS IF+DEID++ RGE + R
Sbjct: 71 IXHEGMGESKKLVANLFQIAREGAPSIIFIDEIDSLCGTRGEGNESEASRR 223
Score = 27.2 bits (53), Expect(3) = 1e-030
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3 / +2
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRR 593
E + VL +T+G+S S++ + K+ +P+R+
Sbjct: 431 ESDF*VLSRRTKGFSCSNVAVCVKDVLFEPVRQ 529
>gb|BI950087.1|BI950087 HVSMEl0018H22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018H22f, mRNA sequence
Length = 884
Score = 105 bits (225), Expect(2) = 4e-030
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR
Sbjct: 205 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 384
Query: 198 HHAPSTIFLDEIDAIISQRGEARSE 272
AP +F DE+D+I +QRG + +
Sbjct: 385 GSAPCVLFFDELDSIATQRGSSSGD 459
Score = 48.3 bits (99), Expect(2) = 4e-030
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEA 572
RL++ I +PLP+ D+RH +F L +P +I L + T+ ++G+DI C+ A
Sbjct: 595 RLDQLIYIPLPDVDSRHQIFXACLRKSPLAKDIDLSALAKYTQRFNGADIT*NCQRA 765
>gb|BJ450504.1|BJ450504 BJ450504 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29p10 5', mRNA sequence
Length = 627
Score = 61.6 bits (128), Expect(5) = 7e-030
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +3 / +1
Query: 336 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELL 473
D+LV V+ ATN P ELD A+LRRL KRI VPLP+P+ R + + L
Sbjct: 235 DDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDPNVRRLLLKNQL 372
Score = 46.9 bits (96), Expect(5) = 7e-030
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3 / +1
Query: 513 LVEKTEGYSGSDIRLVCKEAAMQPLRRV 596
L +TEGYSGSD+R +C+EAAM P+R +
Sbjct: 415 LAVETEGYSGSDLRALCEEAAMMPIREL 498
Score = 35.9 bits (72), Expect(5) = 7e-030
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGLT 329
E++ASRRLK+E LIQ DG+T
Sbjct: 166 ENDASRRLKSEFLIQFDGVT 225
Score = 31.8 bits (63), Expect(5) = 7e-030
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +1
Query: 183 FELARHHAPSTIFLDEIDAIISQR 254
F +A PS IF+DEID+++S R
Sbjct: 85 FXVAVERQPSVIFMDEIDSVMSTR 156
Score = 26.7 bits (52), Expect(5) = 7e-030
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3 / +2
Query: 99 CKTTFFNISASSIVSKWRGDSEKLVKVL 182
C+ F + + + KW G++EKLV+ L
Sbjct: 2 CREAHFLMFSFFVDIKWVGEAEKLVRTL 85
>gb|CA026989.1|CA026989 HZ57I24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57I24
5-PRIME, mRNA sequence
Length = 495
Score = 130 bits (279), Expect = 9e-030
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 230 GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 409
Query: 192 ARHHAPSTIFLDEIDAIISQRGE 260
AR +APS IF+DEID++ RGE
Sbjct: 410 ARENAPSIIFIDEIDSLCGTRGE 478
>gb|CK124523.1|CK124523 BES1824109h02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010H029 5-PRIME, mRNA sequence
Length = 690
Score = 105 bits (225), Expect(3) = 9e-030
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR
Sbjct: 55 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 234
Query: 198 HHAPSTIFLDEIDAIISQRGEARSE 272
AP +F DE+D+I +QRG + +
Sbjct: 235 GSAPCVLFFDELDSIATQRGSSSGD 309
Score = 40.5 bits (82), Expect(3) = 9e-030
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEG 533
RL++ I +PLP+ D+RH +F+ L +P +I L + T+G
Sbjct: 445 RLDQLIYIPLPDVDSRHQIFKACLRKSPLAKDIDLSALAKYTQG 576
Score = 25.4 bits (49), Expect(3) = 9e-030
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3 / +2
Query: 510 VLVEKTEGYSGSDIRLVCKEAAMQPLR 590
+L +G+SG+DI +C+ A +R
Sbjct: 554 LLPSTPKGFSGADITEICQRACKYAIR 634
>gb|BF260432.3|BF260432 HVSMEf0021P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021P16f, mRNA sequence
Length = 832
Score = 109 bits (233), Expect(3) = 2e-029
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LLSP KG+LL+GPPGTGKTMLAKA+A E F N+ S+++SKW GD++KLV +F LA
Sbjct: 188 LLSPQKGVLLYGPPGTGKTMLAKAIAKESGARFINVRISNLMSKWFGDAQKLVSAVFSLA 367
Query: 195 RHHAPSTIFLDEIDAIISQRGEARSE 272
P+ IF+DE + + QR E
Sbjct: 368 NKLQPAIIFIDEGRSFLGQRRNTNHE 445
Score = 33.1 bits (66), Expect(3) = 2e-029
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRR 404
T + V VLAATN P ELD A LRR
Sbjct: 497 TDQNARVMVLAATNRPSELDEAFLRR 574
Score = 24.0 bits (46), Expect(3) = 2e-029
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLT 329
+ HEA +KTE + DG T
Sbjct: 434 TNHEALTNMKTEFMSLWDGFT 496
>gb|AV913885.1|AV913885 AV913885 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23k03 5', mRNA sequence
Length = 640
Score = 80.3 bits (169), Expect(3) = 2e-029
Identities = 33/91 (36%), Positives = 59/91 (64%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
+K ++ + +L ATN P++LD A++RRL +RI V LP+ + R+ + + LL + +
Sbjct: 215 SKENQRILILGATNRPFDLDDAVIRRLPRRIYVGLPDAENRNKILKILLAKENIESDFKF 394
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D L TEGYSGSD++ +C +A +P++ ++
Sbjct: 395 DELANATEGYSGSDLKNLCIASAYRPVQELL 487
Score = 58.8 bits (122), Expect(3) = 2e-029
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +3 / +2
Query: 129 SSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEA 263
S++ SKW GD+EKL K LF A AP IF+DE+D+++ RG A
Sbjct: 17 STLTSKWFGDAEKLTKALFSFASRLAPVIIFVDEVDSLLGARGGA 151
Score = 27.6 bits (54), Expect(3) = 2e-029
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA+R+++ E + DGL
Sbjct: 155 EHEATRKMRNEFMAAWDGL 211
>gb|BQ472612.1|BQ472612 HB01P21r BC Hordeum vulgare subsp. vulgare cDNA clone HB01P21
5-PRIME, mRNA sequence
Length = 618
Score = 86.3 bits (182), Expect(2) = 3e-029
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+ ++E + VLAATN P++LD A++RR E RI+V LP ++R + ++LL I
Sbjct: 212 LSNSNERILVLAATNRPFDLDEAIVRRFEHRIMVGLPTLESRELILKKLLSKEKVEEGID 391
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
+ L TEGYSGSD++ +C AA +P+R ++
Sbjct: 392 FKELATSTEGYSGSDLKNLCVTAAYRPVRELI 487
Score = 62.5 bits (130), Expect(2) = 3e-029
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 117 NISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGE 260
NIS S+I+SK+ GD+EK ++ LF LA AP+ IF+DE+D+++ QR +
Sbjct: 5 NISLSTIMSKYYGDAEKTIRALFSLATKLAPAIIFVDEVDSLLGQRDQ 148
>gb|BQ472874.1|BQ472874 HB01D18r BC Hordeum vulgare subsp. vulgare cDNA clone HB01D18
5-PRIME, mRNA sequence
Length = 542
Score = 86.3 bits (182), Expect(2) = 3e-029
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+ ++E + VLAATN P++LD A++RR E RI+V LP ++R + ++LL I
Sbjct: 212 LSNSNERILVLAATNRPFDLDEAIVRRFEHRIMVGLPTLESRELILKKLLSKEKVEEGID 391
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
+ L TEGYSGSD++ +C AA +P+R ++
Sbjct: 392 FKELATSTEGYSGSDLKNLCVTAAYRPVRELI 487
Score = 62.5 bits (130), Expect(2) = 3e-029
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 117 NISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGE 260
NIS S+I+SK+ GD+EK ++ LF LA AP+ IF+DE+D+++ QR +
Sbjct: 5 NISLSTIMSKYYGDAEKTIRALFSLATKLAPAIIFVDEVDSLLGQRDQ 148
>gb|AV916179.1|AV916179 AV916179 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p16 5', mRNA sequence
Length = 578
Score = 105 bits (225), Expect(2) = 6e-028
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR
Sbjct: 6 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 185
Query: 198 HHAPSTIFLDEIDAIISQRGEARSE 272
AP +F DE+D+I +QRG + +
Sbjct: 186 GSAPCVLFFDELDSIATQRGSSSGD 260
Score = 40.5 bits (82), Expect(2) = 6e-028
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3 / +3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEG 533
RL++ I +PLP+ D+RH +F+ L +P +I L + T+G
Sbjct: 396 RLDQLIYIPLPDVDSRHQIFKACLRKSPLAKDIDLSALAKYTQG 527
>gb|BU979682.1|BU979682 HA16O21r HA Hordeum vulgare subsp. vulgare cDNA clone HA16O21
5-PRIME, mRNA sequence
Length = 616
Score = 122 bits (260), Expect = 4e-027
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 320 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 499
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 500 SKISPSVIFIDEVDSMLGRR 559
>gb|CA011901.1|CA011901 HT03N20r HT Hordeum vulgare subsp. vulgare cDNA clone HT03N20
5-PRIME, mRNA sequence
Length = 399
Score = 122 bits (260), Expect = 4e-027
Identities = 52/94 (55%), Positives = 62/94 (65%)
Frame = +3 / +3
Query: 6 RPGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLF 185
R LL P KGILLFGPPGTGKT+LAKA+ATE F +I+ SS+ SKW GD+EKL K LF
Sbjct: 84 RGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSSLTSKWFGDAEKLTKALF 263
Query: 186 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
A AP IF DE+D+++ RG A R
Sbjct: 264 SFASRLAPVIIFXDEVDSLLGARGGAMEHEATRR 365
>gb|BE421366.1|BE421366 HWM008.E11 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM008.E11, mRNA sequence
Length = 1011
Score = 72.5 bits (152), Expect(3) = 5e-027
Identities = 34/91 (37%), Positives = 50/91 (54%)
Frame = +3 / +1
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
T + V VLAATN P ELD A+LRR + + +P R + + +L I Y
Sbjct: 355 TDQNARVMVLAATNRPSELDEAILRRFTQIFEIGVPSRSERSKILQVILKGENVESNIDY 534
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D + EG++GSDI +CK+AA P+R ++
Sbjct: 535 DYIASLCEGFTGSDILELCKQAAFYPIREIL 627
Score = 61.6 bits (128), Expect(3) = 5e-027
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3 / +1
Query: 111 FFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQR 254
F N+ S+++SKW GD++KLV +F LA P+ IF+DE+D+ + QR
Sbjct: 142 FMNVRISNLMSKWFGDAQKLVSAVFSLANKLQPAIIFIDEVDSFLGQR 285
Score = 24.9 bits (48), Expect(3) = 5e-027
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLT 329
++HEA +KTE + DG T
Sbjct: 292 TDHEALTNMKTEFMSLWDGFT 354
>gb|BQ469784.1|BQ469784 HZ01N19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01N19
5-PRIME, mRNA sequence
Length = 477
Score = 117 bits (250), Expect = 9e-026
Identities = 48/77 (62%), Positives = 62/77 (80%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSK G+SEKLV LF++
Sbjct: 244 GKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK*MGESEKLVANLFQM 423
Query: 192 ARHHAPSTIFLDEIDAI 242
AR +APS IF+DEID++
Sbjct: 424 ARENAPSIIFIDEIDSL 474
>gb|BQ768557.1|BQ768557 EBro08_SQ012_E03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_E03 5', mRNA sequence
Length = 737
Score = 116 bits (249), Expect = 1e-025
Identities = 49/114 (42%), Positives = 72/114 (63%)
Frame = +3 / +2
Query: 30 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 209
KG+LL+GPPGTGKT+LA+AVA TF +S S +V K+ G+ ++V+ LF +AR HAP
Sbjct: 143 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQHAP 322
Query: 210 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNL 371
+ IF+DE+D+I S R E+ +R ELL Q+DG + ++A +
Sbjct: 323 TIIFMDEVDSIGSTRIESSGGDSEVQRTMMELLNQLDGFEAAKNIKVLMATNRI 484
>gb|BU988151.1|BU988151 HF16M22r HF Hordeum vulgare subsp. vulgare cDNA clone HF16M22
5-PRIME, mRNA sequence
Length = 679
Score = 90.9 bits (192), Expect(2) = 3e-025
Identities = 38/90 (42%), Positives = 56/90 (62%)
Frame = +3 / +1
Query: 57 GTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEID 236
G KT++A+AVA+E K F + + SKW GDSEK V+ LF A+ +AP+ +F DEID
Sbjct: 1 GCSKTLMARAVASEAKMNFLAVKGPELFSKWVGDSEKAVRSLFAKAKENAPAILFFDEID 180
Query: 237 AIISQRGEARSEHEASRRLKTELLIQMDGL 326
+ RG + + R+ ++LL +MDGL
Sbjct: 181 GLAVTRGHGSNGISVADRVLSQLLQEMDGL 270
Score = 44.1 bits (90), Expect(2) = 3e-025
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
R ++ + V P+ R +F P + ++ + L TEGY+G+DI+LVC+EAA+
Sbjct: 349 RFDRLLDVQPPDEADREDIFRIHTRSIPCSDDVNLNELARLTEGYTGADIKLVCREAAVA 528
Query: 582 PL 587
L
Sbjct: 529 AL 534
>gb|AV915769.1|AV915769 AV915769 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p04 5', mRNA sequence
Length = 543
Score = 93.2 bits (197), Expect(3) = 7e-025
Identities = 34/76 (44%), Positives = 52/76 (68%)
Frame = +3 / +3
Query: 45 FGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFL 224
+GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR AP +F
Sbjct: 6 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFF 185
Query: 225 DEIDAIISQRGEARSE 272
DE+D+I +QRG + +
Sbjct: 186 DELDSIATQRGSSSGD 233
Score = 34.1 bits (68), Expect(3) = 7e-025
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3 / +3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEI 500
RL++ I +PLP+ D+RH +F+ L +P +I
Sbjct: 369 RLDQLIYIPLPDVDSRHQIFKACLRKSPLAKDI 467
Score = 27.2 bits (53), Expect(3) = 7e-025
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3 / +1
Query: 513 LVEKTEGYSGSDIRLVCKEA 572
L + T+G+SG+DI +C+ A
Sbjct: 481 LAKYTQGFSGADITEICQRA 540
>gb|BQ767779.1|BQ767779 EBro08_SQ009_G20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_G20 5', mRNA sequence
Length = 551
Score = 79.9 bits (168), Expect(2) = 7e-025
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = +3 / +3
Query: 63 GKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAI 242
GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR AP +F DE+D+I
Sbjct: 6 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSI 185
Query: 243 ISQRGEA 263
+QRG +
Sbjct: 186 ATQRGSS 206
Score = 56.1 bits (116), Expect(2) = 7e-025
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +3 / +3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ D+RH +F+ L +P +I L + T+ +SG+DI +C+ A
Sbjct: 351 RLDQLIYIPLPDVDSRHQIFKACLKKSPLAKDIDLSALAKYTQRFSGADITEICQRACKY 530
Query: 582 PLR 590
+R
Sbjct: 531 AIR 539
>gb|BJ464155.1|BJ464155 BJ464155 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33b13 5', mRNA sequence
Length = 509
Score = 105 bits (224), Expect(2) = 1e-024
Identities = 39/82 (47%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR
Sbjct: 87 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 266
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 267 GSAPCVLFFDELDSIATQRGSS 332
Score = 27.6 bits (54), Expect(2) = 1e-024
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3 / +3
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEP 440
VF++ ATN P +D A+LR L+ +P P
Sbjct: 414 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 509
>gb|AV926794.1|AV926794 AV926794 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23m18 5', mRNA sequence
Length = 661
Score = 105 bits (224), Expect(2) = 2e-024
Identities = 39/82 (47%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR
Sbjct: 212 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 391
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 392 GSAPCVLFFDELDSIATQRGSS 457
Score = 26.7 bits (52), Expect(2) = 2e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 345 VFVLAATNLPWELDAAMLR 401
VF++ ATN P +D A+LR
Sbjct: 539 VFIIGATNRPDXIDPALLR 595
>gb|CV055826.1|CV055826 BNEL123h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL123h3 5' similar to 26S
proteasome regulatory particle triple-A ATPase subunit6,
mRNA sequence
Length = 678
Score = 111 bits (238), Expect = 4e-024
Identities = 48/92 (52%), Positives = 64/92 (69%)
Frame = +3 / +1
Query: 30 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 209
KG+LL+GPPGTGKT+LA+AVA TF +S S +V K+ G+ ++V+ LF +AR HAP
Sbjct: 310 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP 489
Query: 210 STIFLDEIDAIISQRGEARSEHEASRRLKTEL 305
S IF+DEID+I S R E+ S H S +T L
Sbjct: 490 SIIFMDEIDSIGSARMESGSGHGDSEGQRTML 585
>gb|CK123916.1|CK123916 BES1824106c06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C066 5-PRIME, mRNA sequence
Length = 789
Score = 105 bits (224), Expect(2) = 4e-024
Identities = 39/82 (47%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F +I +++ W G+SE V+ +F+ AR
Sbjct: 358 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 537
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 538 GSAPCVLFFDELDSIATQRGSS 603
Score = 25.8 bits (50), Expect(2) = 4e-024
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 345 VFVLAATNLPWELDAAMLR 401
VF++ ATN P +D A+LR
Sbjct: 685 VFIIGATNRPDIIDPALLR 741
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 409,919,767
Number of Sequences: 312970
Number of extensions: 6201351
Number of successful extensions: 35501
Number of sequences better than 1.0e-020: 143
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10315416055
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)