TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2945733.2.1
(885 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U01228.1|U01228 Hordeum vulgare Harrington haemoglobin a... 327 4e-089
gb|BQ465541.1|BQ465541 HU03P07r HU Hordeum vulgare subsp. v... 326 1e-088
gb|BQ466276.1|BQ466276 HT02B10r HT Hordeum vulgare subsp. v... 326 1e-088
gb|CA014628.1|CA014628 HT11O06r HT Hordeum vulgare subsp. v... 326 1e-088
gb|BQ465893.1|BQ465893 HU04P18r HU Hordeum vulgare subsp. v... 322 1e-087
gb|AL505599.1|AL505599 AL505599 Hordeum vulgare Barke roots... 254 2e-083
gb|AL503784.1|AL503784 AL503784 Hordeum vulgare Barke roots... 284 4e-076
gb|CA003688.1|CA003688 HS15E03r HS Hordeum vulgare subsp. v... 276 1e-073
gb|CA017690.1|CA017690 HV05O24r HV Hordeum vulgare subsp. v... 273 8e-073
gb|BF622874.3|BF622874 HVSMEa0009M01f Hordeum vulgare seedl... 255 2e-067
gb|BQ465782.1|BQ465782 HU04K20r HU Hordeum vulgare subsp. v... 253 7e-067
gb|AL504592.1|AL504592 AL504592 Hordeum vulgare Barke roots... 199 5e-064
gb|BQ465502.1|BQ465502 HU03N05r HU Hordeum vulgare subsp. v... 242 2e-063
gb|BQ663933.1|BQ663933 HU04K20u HU Hordeum vulgare subsp. v... 228 3e-059
gb|BQ663745.1|BQ663745 HU03N05u HU Hordeum vulgare subsp. v... 219 2e-056
gb|BG299715.2|BG299715 HVSMEa0021I06f Hordeum vulgare seedl... 218 4e-056
gb|AL502861.1|AL502861 AL502861 Hordeum vulgare Barke roots... 217 8e-056
gb|CA009955.1|CA009955 HT12D15u HT Hordeum vulgare subsp. v... 162 3e-039
gb|BI777666.2|BI777666 EBro08_SQ001_E09_R root, 3 week, dro... 150 1e-035
>gb|U01228.1|U01228 Hordeum vulgare Harrington haemoglobin apoprotein (hb) mRNA,
complete cds
Length = 939
Score = 327 bits (709), Expect = 4e-089
Identities = 137/165 (83%), Positives = 149/165 (90%)
Frame = +1 / +3
Query: 166 AGMALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLR 345
+G A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLR
Sbjct: 48 SGKEAMSAAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLR 227
Query: 346 DSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHF 525
DSDVPLE NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHF
Sbjct: 228 DSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHF 407
Query: 526 EVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
EVT FALLETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 408 EVTRFALLETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 542
Score = 210 bits (452), Expect = 1e-053
Identities = 100/143 (69%), Positives = 103/143 (72%)
Frame = -2 / -3
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 547 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 368
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAI 306
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN NIC ADGAI
Sbjct: 367 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAI 188
Query: 305 SKTLRKKRRPRLAASFFMTAHDL 237
SK LRKKR PRLA SFFM AHDL
Sbjct: 187 SKILRKKRSPRLAESFFMMAHDL 119
Score = 204 bits (439), Expect = 8e-052
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +3 / +2
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 188 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 367
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
RHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 368 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 541
Score = 175 bits (376), Expect(2) = 6e-053
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / -2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 539 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 360
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 359 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 222
Score = 52.8 bits (109), Expect(2) = 6e-053
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -2
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 158 KVGGILLHDGP*LEHQRLLLLAED 87
>gb|BQ465541.1|BQ465541 HU03P07r HU Hordeum vulgare subsp. vulgare cDNA clone HU03P07
5-PRIME, mRNA sequence
Length = 622
Score = 326 bits (706), Expect = 1e-088
Identities = 136/158 (86%), Positives = 147/158 (93%)
Frame = +1 / +3
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 105 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 284
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 285 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 464
Query: 547 LETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
LETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 465 LETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 578
Score = 210 bits (452), Expect = 1e-053
Identities = 100/143 (69%), Positives = 103/143 (72%)
Frame = -2 / -1
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 583 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 404
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAI 306
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN NIC ADGAI
Sbjct: 403 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAI 224
Query: 305 SKTLRKKRRPRLAASFFMTAHDL 237
SK LRKKR PRLA SFFM AHDL
Sbjct: 223 SKILRKKRSPRLAESFFMMAHDL 155
Score = 204 bits (439), Expect = 8e-052
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +3 / +2
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 224 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 403
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
RHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 404 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 577
Score = 175 bits (376), Expect(2) = 6e-053
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / -3
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 575 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 396
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 395 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 258
Score = 52.8 bits (109), Expect(2) = 6e-053
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -3
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 194 KVGGILLHDGP*LEHQRLLLLAED 123
>gb|BQ466276.1|BQ466276 HT02B10r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B10
5-PRIME, mRNA sequence
Length = 598
Score = 326 bits (706), Expect = 1e-088
Identities = 136/158 (86%), Positives = 147/158 (93%)
Frame = +1 / +1
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 94 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 273
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 274 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 453
Query: 547 LETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
LETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 454 LETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 567
Score = 210 bits (452), Expect = 1e-053
Identities = 100/143 (69%), Positives = 103/143 (72%)
Frame = -2 / -3
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 572 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 393
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAI 306
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN NIC ADGAI
Sbjct: 392 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAI 213
Query: 305 SKTLRKKRRPRLAASFFMTAHDL 237
SK LRKKR PRLA SFFM AHDL
Sbjct: 212 SKILRKKRSPRLAESFFMMAHDL 144
Score = 204 bits (439), Expect = 8e-052
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +3 / +3
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 213 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 392
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
RHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 393 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 566
Score = 175 bits (376), Expect(2) = 6e-053
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / -2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 564 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 385
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 384 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 247
Score = 52.8 bits (109), Expect(2) = 6e-053
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -2
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 183 KVGGILLHDGP*LEHQRLLLLAED 112
>gb|CA014628.1|CA014628 HT11O06r HT Hordeum vulgare subsp. vulgare cDNA clone HT11O06
5-PRIME, mRNA sequence
Length = 646
Score = 326 bits (706), Expect = 1e-088
Identities = 136/158 (86%), Positives = 147/158 (93%)
Frame = +1 / +2
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 86 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 265
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 266 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 445
Query: 547 LETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
LETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 446 LETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 559
Score = 210 bits (452), Expect = 1e-053
Identities = 100/143 (69%), Positives = 103/143 (72%)
Frame = -2 / -2
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 564 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 385
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAI 306
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN NIC ADGAI
Sbjct: 384 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAI 205
Query: 305 SKTLRKKRRPRLAASFFMTAHDL 237
SK LRKKR PRLA SFFM AHDL
Sbjct: 204 SKILRKKRSPRLAESFFMMAHDL 136
Score = 204 bits (439), Expect = 8e-052
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +3 / +1
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 205 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 384
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
RHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 385 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 558
Score = 175 bits (376), Expect(2) = 6e-053
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / -1
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 556 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 377
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 376 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 239
Score = 52.8 bits (109), Expect(2) = 6e-053
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -1
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 175 KVGGILLHDGP*LEHQRLLLLAED 104
>gb|BQ465893.1|BQ465893 HU04P18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04P18
5-PRIME, mRNA sequence
Length = 593
Score = 322 bits (698), Expect = 1e-087
Identities = 135/158 (85%), Positives = 146/158 (92%)
Frame = +1 / +2
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+F IAPSA+QMF FLRDSDVPLE
Sbjct: 80 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFLIAPSARQMFPFLRDSDVPLE 259
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 260 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 439
Query: 547 LETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
LETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 440 LETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 553
Score = 208 bits (448), Expect = 4e-053
Identities = 99/143 (69%), Positives = 102/143 (71%)
Frame = -2 / -3
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 558 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 379
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAI 306
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN NIC ADGAI
Sbjct: 378 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAI 199
Query: 305 SKTLRKKRRPRLAASFFMTAHDL 237
K LRKKR PRLA SFFM AHDL
Sbjct: 198 KKILRKKRSPRLAESFFMMAHDL 130
Score = 204 bits (439), Expect = 8e-052
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +3 / +1
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 199 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 378
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
RHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 379 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 552
Score = 175 bits (376), Expect(2) = 6e-053
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / -2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 550 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 371
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 370 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 233
Score = 52.8 bits (109), Expect(2) = 6e-053
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -2
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 169 KVGGILLHDGP*LEHQRLLLLAED 98
>gb|AL505599.1|AL505599 AL505599 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08P10V 5', mRNA sequence
Length = 686
Score = 254 bits (549), Expect(2) = 2e-083
Identities = 105/122 (86%), Positives = 113/122 (92%)
Frame = +1 / +2
Query: 295 KVFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTL 474
++FEIAPSA+QMF FLRDSDVPLE NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTL
Sbjct: 290 RIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTL 469
Query: 475 KRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREM 654
KRLG THL+YGVADGHFEVT FALLETIKEALPADMW EM+ AW EAY QLVAAIK+EM
Sbjct: 470 KRLGGTHLKYGVADGHFEVTRFALLETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEM 649
Query: 655 KP 660
KP
Sbjct: 650 KP 655
Score = 204 bits (439), Expect = 8e-052
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +3 / +1
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 301 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 480
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
RHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 481 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 654
Score = 175 bits (376), Expect(2) = 9e-049
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / -2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 652 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 473
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 472 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 335
Score = 173 bits (373), Expect(2) = 2e-052
Identities = 84/127 (66%), Positives = 88/127 (69%)
Frame = -2 / -3
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 660 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 481
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAI 306
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN NIC ADGAI
Sbjct: 480 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAI 301
Query: 305 SKTLRKK 285
SK L +
Sbjct: 300 SKILEAR 280
Score = 75.8 bits (159), Expect(2) = 2e-083
Identities = 31/37 (83%), Positives = 35/37 (94%)
Frame = +1 / +1
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLK 297
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK
Sbjct: 85 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLK 195
Score = 52.8 bits (109), Expect(2) = 2e-052
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -3
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 174 KVGGILLHDGP*LEHQRLLLLAED 103
Score = 41.4 bits (84), Expect(2) = 9e-049
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = -2 / -1
Query: 296 LRKKRRPRLAASFFMTAHDL 237
LRKKR PRLA SFFM AHDL
Sbjct: 194 LRKKRSPRLAESFFMMAHDL 135
>gb|AL503784.1|AL503784 AL503784 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03G17T 5', mRNA sequence
Length = 494
Score = 284 bits (615), Expect = 4e-076
Identities = 119/136 (87%), Positives = 128/136 (94%)
Frame = +1 / +1
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 85 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 264
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 265 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 444
Query: 547 LETIKEALPADMWSLE 594
LETIKEALPADMW E
Sbjct: 445 LETIKEALPADMWGPE 492
Score = 186 bits (400), Expect = 2e-046
Identities = 86/120 (71%), Positives = 87/120 (72%)
Frame = -2 / -1
Query: 596 ISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCAAAS 417
IS HM AN VTSK PSATPY KCV PSL VVSLTV PA R+CAAAS
Sbjct: 494 ISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVPPSLFRVVSLTVILPAFRNCAAAS 315
Query: 416 QVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAISKTLRKKRRPRLAASFFMTAHDL 237
QVMTKTD A VLSLG SSGTSESRRN NIC ADGAISK LRKKR PRLA SFFM AHDL
Sbjct: 314 QVMTKTDTAWVLSLGLVSSGTSESRRNGNICLADGAISKILRKKRSPRLAESFFMMAHDL 135
Score = 172 bits (370), Expect = 3e-042
Identities = 72/97 (74%), Positives = 80/97 (82%)
Frame = +3 / +3
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 204 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 383
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRD 596
RHALE+RR RW LRGD VR+A DDQGGA *HV RD
Sbjct: 384 RHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARD 494
Score = 149 bits (321), Expect(2) = 2e-045
Identities = 65/85 (76%), Positives = 70/85 (82%)
Frame = -1 / -3
Query: 594 LEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQPLERGLPHGDLPGLAELRRRLA 415
L PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQPL+ GLP GDL G +LR RLA
Sbjct: 492 LGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQPLQGGLPDGDLAGFPQLRSRLA 313
Query: 414 GHDEDGHGVRLELGVLLQRHVGVAQ 340
GHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 312 GHDEDGHGVGLELGVGLQRHVGVAQ 238
Score = 52.8 bits (109), Expect(2) = 2e-045
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -3
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 174 KVGGILLHDGP*LEHQRLLLLAED 103
>gb|CA003688.1|CA003688 HS15E03r HS Hordeum vulgare subsp. vulgare cDNA clone HS15E03
5-PRIME, mRNA sequence
Length = 486
Score = 276 bits (597), Expect = 1e-073
Identities = 116/131 (88%), Positives = 125/131 (95%)
Frame = +1 / +1
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 94 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 273
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 274 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 453
Query: 547 LETIKEALPAD 579
LETIKEALPAD
Sbjct: 454 LETIKEALPAD 486
Score = 181 bits (389), Expect(2) = 2e-049
Identities = 81/101 (80%), Positives = 82/101 (81%)
Frame = -2 / -2
Query: 539 NPVTSKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSS 360
N VTSK PSATPY KCV PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SS
Sbjct: 446 NRVTSKWPSATPYFKCVPPSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSS 267
Query: 359 GTSESRRNENICFADGAISKTLRKKRRPRLAASFFMTAHDL 237
GTSESRRN NIC ADGAISK LRKKR PRLA SFFM AHDL
Sbjct: 266 GTSESRRNGNICLADGAISKILRKKRSPRLAESFFMMAHDL 144
Score = 164 bits (352), Expect = 8e-040
Identities = 67/88 (76%), Positives = 75/88 (85%)
Frame = +3 / +3
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 213 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 392
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGA 569
RHALE+RR RW LRGD VR+A DDQGGA
Sbjct: 393 RHALEIRRGRWPLRGDAVRSARDDQGGA 476
Score = 142 bits (305), Expect(2) = 3e-043
Identities = 62/80 (77%), Positives = 67/80 (83%)
Frame = -1 / -1
Query: 579 VSGERLLDRLKQREPRHLEVSICDAVPQVRGAQPLERGLPHGDLPGLAELRRRLAGHDED 400
VS +RLLDRL+Q EPRHLEV+IC AV QVR AQPL+ GLP GDL G +LR RLAGHDED
Sbjct: 486 VSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQPLQGGLPDGDLAGFPQLRSRLAGHDED 307
Query: 399 GHGVRLELGVLLQRHVGVAQ 340
GHGV LELGV LQRHVGVAQ
Sbjct: 306 GHGVGLELGVGLQRHVGVAQ 247
Score = 52.8 bits (109), Expect(2) = 3e-043
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -1
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 183 KVGGILLHDGP*LEHQRLLLLAED 112
Score = 35.0 bits (70), Expect(2) = 2e-049
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / -3
Query: 577 QRGAPP*SSQAARTPSPRSVHL 512
Q APP*SS+A RT SPRS HL
Sbjct: 484 QPEAPP*SSRAERTASPRSGHL 419
>gb|CA017690.1|CA017690 HV05O24r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O24
5-PRIME, mRNA sequence
Length = 500
Score = 273 bits (591), Expect = 8e-073
Identities = 115/130 (88%), Positives = 124/130 (95%)
Frame = +1 / +1
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 109 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 288
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 289 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 468
Query: 547 LETIKEALPA 576
LETIKEALPA
Sbjct: 469 LETIKEALPA 498
Score = 181 bits (389), Expect(2) = 2e-049
Identities = 81/101 (80%), Positives = 82/101 (81%)
Frame = -2 / -1
Query: 539 NPVTSKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSS 360
N VTSK PSATPY KCV PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SS
Sbjct: 461 NRVTSKWPSATPYFKCVPPSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSS 282
Query: 359 GTSESRRNENICFADGAISKTLRKKRRPRLAASFFMTAHDL 237
GTSESRRN NIC ADGAISK LRKKR PRLA SFFM AHDL
Sbjct: 281 GTSESRRNGNICLADGAISKILRKKRSPRLAESFFMMAHDL 159
Score = 164 bits (352), Expect = 8e-040
Identities = 67/88 (76%), Positives = 75/88 (85%)
Frame = +3 / +3
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 228 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 407
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGA 569
RHALE+RR RW LRGD VR+A DDQGGA
Sbjct: 408 RHALEIRRGRWPLRGDAVRSARDDQGGA 491
Score = 140 bits (301), Expect(2) = 1e-042
Identities = 61/79 (77%), Positives = 66/79 (83%)
Frame = -1 / -3
Query: 576 SGERLLDRLKQREPRHLEVSICDAVPQVRGAQPLERGLPHGDLPGLAELRRRLAGHDEDG 397
S +RLLDRL+Q EPRHLEV+IC AV QVR AQPL+ GLP GDL G +LR RLAGHDEDG
Sbjct: 498 SRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQPLQGGLPDGDLAGFPQLRSRLAGHDEDG 319
Query: 396 HGVRLELGVLLQRHVGVAQ 340
HGV LELGV LQRHVGVAQ
Sbjct: 318 HGVGLELGVGLQRHVGVAQ 262
Score = 52.8 bits (109), Expect(2) = 1e-042
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -3
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 198 KVGGILLHDGP*LEHQRLLLLAED 127
Score = 35.0 bits (70), Expect(2) = 2e-049
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / -2
Query: 577 QRGAPP*SSQAARTPSPRSVHL 512
Q APP*SS+A RT SPRS HL
Sbjct: 499 QPEAPP*SSRAERTASPRSGHL 434
>gb|BF622874.3|BF622874 HVSMEa0009M01f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009M01f, mRNA sequence
Length = 698
Score = 255 bits (552), Expect = 2e-067
Identities = 108/147 (73%), Positives = 121/147 (82%)
Frame = +1 / +1
Query: 169 GMALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRD 348
G A +GAVVF EE+EAL+LK WA+MKKD++NLGLR LK+FEIAPSA+ MF LRD
Sbjct: 163 GKEAISAAEGAVVFIEEKEALLLK*WAIMKKDSSNLGLRLLLKIFEIAPSARHMFPCLRD 342
Query: 349 SDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFE 528
SDVPLE NPKLKTHA+SVFVMTCEA A LRKAGK+TVRETTLKRLG HL+YGVADGHF
Sbjct: 343 SDVPLETNPKLKTHAVSVFVMTCEAVAHLRKAGKITVRETTLKRLGGPHLKYGVADGHF* 522
Query: 529 VTGFALLETIKEALPADMWSLEMKKAW 609
T FALLE IKEALP DMW +M+ AW
Sbjct: 523 GTRFALLEDIKEALPVDMWGPQMRNAW 603
Score = 150 bits (323), Expect = 8e-036
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = -2 / -1
Query: 605 AFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCA 426
AF I HM AN V K PSATPY K P+L VVSLTV PA R A
Sbjct: 599 AFLIWGPHMSTGSASLMSSSRANRVP*KWPSATPYFKWGPPNLFRVVSLTVILPAFRKWA 420
Query: 425 AASQVMTKTDMACVLSLGFFSSGTSESRRNENICFADGAISKTLRKKRRPRLAASFFMTA 246
ASQVMTKTD A VLSLG SSGTSESRR+ NIC ADGAISK L KR PRL SFFM A
Sbjct: 419 TASQVMTKTDTAWVLSLGLVSSGTSESRRHGNICLADGAISKILSNKRSPRLEESFFMMA 240
Query: 245 HDL 237
H L
Sbjct: 239 HYL 231
Score = 144 bits (309), Expect = 7e-034
Identities = 64/105 (60%), Positives = 76/105 (72%)
Frame = +3 / +3
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
+RAVGEA V VPARLRRAAG++PQAQD R VRLRHDLRGG + R+ HR+GDH ++ G
Sbjct: 300 NRAVGEAYVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCPFAESRQNHRKGDHPEKVG 479
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGL 620
R LE+RR RW L GD VR+A QGGA *HV +EE +G L
Sbjct: 480 RPPLEIRRGRWPLLGDAVRSARRHQGGASG*HVGAPNEERVGARL 614
Score = 133 bits (285), Expect(2) = 8e-039
Identities = 58/90 (64%), Positives = 66/90 (73%)
Frame = -1 / -3
Query: 609 PGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQPLERGLPHGDLPGLAEL 430
P HL PHV+ +RLLD +Q EPR LEV+IC AV QV AQP + GLP+GD G ++
Sbjct: 603 PRVPHLGPPHVNRKRLLDVFEQSEPRPLEVAICHAVFQVGAAQPFQGGLPYGDFAGFPQM 424
Query: 429 RRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 423 GNRLAGHDEDGHGVGLELGVGLQRHVGVAQ 334
Score = 47.3 bits (97), Expect(2) = 8e-039
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1 / -3
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LE QRLLLL ED
Sbjct: 270 KVGGILLHDGPLLEQQRLLLLDED 199
>gb|BQ465782.1|BQ465782 HU04K20r HU Hordeum vulgare subsp. vulgare cDNA clone HU04K20
5-PRIME, mRNA sequence
Length = 516
Score = 253 bits (548), Expect = 7e-067
Identities = 106/121 (87%), Positives = 115/121 (95%)
Frame = +1 / +3
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 153 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 332
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFAL 546
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FAL
Sbjct: 333 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFAL 512
Query: 547 L 549
L
Sbjct: 513 L 515
Score = 181 bits (389), Expect = 6e-045
Identities = 81/101 (80%), Positives = 82/101 (81%)
Frame = -2 / -3
Query: 539 NPVTSKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSS 360
N VTSK PSATPY KCV PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SS
Sbjct: 505 NRVTSKWPSATPYFKCVPPSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSS 326
Query: 359 GTSESRRNENICFADGAISKTLRKKRRPRLAASFFMTAHDL 237
GTSESRRN NIC ADGAISK LRKKR PRLA SFFM AHDL
Sbjct: 325 GTSESRRNGNICLADGAISKILRKKRSPRLAESFFMMAHDL 203
Score = 150 bits (323), Expect = 8e-036
Identities = 61/81 (75%), Positives = 69/81 (85%)
Frame = +3 / +2
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 272 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 451
Query: 486 RHALEVRRRRWTLRGDGVRAA 548
RHALE+RR RW LRGD VR+A
Sbjct: 452 RHALEIRRGRWPLRGDAVRSA 514
Score = 126 bits (270), Expect(2) = 2e-038
Identities = 54/70 (77%), Positives = 58/70 (82%)
Frame = -1 / -2
Query: 549 KQREPRHLEVSICDAVPQVRGAQPLERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGV 370
+Q EPRHLEV+IC AV QVR AQPL+ GLP GDL G +LR RLAGHDEDGHGV LELGV
Sbjct: 515 EQSEPRHLEVAICHAVFQVRAAQPLQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGV 336
Query: 369 LLQRHVGVAQ 340
LQRHVGVAQ
Sbjct: 335 GLQRHVGVAQ 306
Score = 52.8 bits (109), Expect(2) = 2e-038
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -2
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 242 KVGGILLHDGP*LEHQRLLLLAED 171
>gb|AL504592.1|AL504592 AL504592 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05M03V 5', mRNA sequence
Length = 609
Score = 199 bits (430), Expect(2) = 5e-064
Identities = 83/97 (85%), Positives = 88/97 (90%)
Frame = +1 / -3
Query: 370 NPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALL 549
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTL RLG THL+YGVA GHFEVT FALL
Sbjct: 499 NPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLXRLGGTHLKYGVAXGHFEVTRFALL 320
Query: 550 ETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
ETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 319 ETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 209
Score = 156 bits (335), Expect(2) = 4e-044
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = +3 / -2
Query: 369 EPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAGRHALEVRRRRWTLRGDGVRAA 548
+PQAQD R VRLRHDLRGG A + R+ HR+GDH + AGRHALE+RR W LRGD VR+A
Sbjct: 500 KPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEXAGRHALEIRRGXWPLRGDAVRSA 321
Query: 549 *DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 320 RDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 210
Score = 151 bits (325), Expect(2) = 3e-048
Identities = 67/96 (69%), Positives = 72/96 (75%)
Frame = -1 / +2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+ C AV QVR AQP
Sbjct: 212 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAXCHAVFQVRAAQP 391
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGV 370
+ GLP GDL G +LR RLAGHDEDGHGV LELGV
Sbjct: 392 XQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGV 499
Score = 127 bits (273), Expect(2) = 3e-031
Identities = 63/99 (63%), Positives = 65/99 (65%)
Frame = -2 / +3
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
+ GFIS LMAATS AS AF IS HM AN VTSK P ATPY KCV
Sbjct: 204 SXGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPXATPYFKCVP 383
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGF 369
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLGF
Sbjct: 384 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGF 500
Score = 65.2 bits (136), Expect(2) = 5e-064
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +1 / -2
Query: 277 GLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPK 378
GLRFFLK+F IAPSA+ MF FLRDSDVPLE P+
Sbjct: 593 GLRFFLKIFXIAPSARXMFPFLRDSDVPLETKPQ 492
Score = 60.6 bits (126), Expect(2) = 3e-048
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -2 / +1
Query: 374 GFFSSGTSESRRNENICFADGAISKTLRKKRRPRL 270
G SSGTSESRRN N C ADGAI K LRKKR P++
Sbjct: 496 GLVSSGTSESRRNGNXCLADGAIXKILRKKRSPKV 600
Score = 42.3 bits (86), Expect(2) = 4e-044
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3 / -1
Query: 306 DRAVGEADVLVPARLRRAAGEE 371
DRAVGEA V VPARLRRAAG++
Sbjct: 564 DRAVGEAXVPVPARLRRAAGDQ 499
Score = 27.6 bits (54), Expect(2) = 3e-031
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 384 LELGVLLQRHVGVAQ 340
L LG LQRHVGVAQ
Sbjct: 486 LSLGFGLQRHVGVAQ 530
>gb|BQ465502.1|BQ465502 HU03N05r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N05
5-PRIME, mRNA sequence
Length = 431
Score = 242 bits (523), Expect = 2e-063
Identities = 100/114 (87%), Positives = 109/114 (95%)
Frame = +1 / +2
Query: 187 ADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLE 366
A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLRDSDVPLE
Sbjct: 89 AAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLE 268
Query: 367 KNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFE 528
NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFE
Sbjct: 269 TNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFE 430
Score = 175 bits (376), Expect = 4e-043
Identities = 78/97 (80%), Positives = 79/97 (81%)
Frame = -2 / -3
Query: 527 SKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSE 348
SK PSATPY KCV PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSE
Sbjct: 429 SKWPSATPYFKCVPPSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSE 250
Query: 347 SRRNENICFADGAISKTLRKKRRPRLAASFFMTAHDL 237
SRRN NIC ADGAISK LRKKR PRLA SFFM AHDL
Sbjct: 249 SRRNGNICLADGAISKILRKKRSPRLAESFFMMAHDL 139
Score = 138 bits (297), Expect = 3e-032
Identities = 56/74 (75%), Positives = 63/74 (85%)
Frame = +3 / +1
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAG
Sbjct: 208 DRAVGEADVPVPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAG 387
Query: 486 RHALEVRRRRWTLR 527
RHALE+RR RW LR
Sbjct: 388 RHALEIRRGRWPLR 429
Score = 112 bits (240), Expect(2) = 3e-034
Identities = 49/63 (77%), Positives = 52/63 (82%)
Frame = -1 / -2
Query: 528 LEVSICDAVPQVRGAQPLERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVG 349
LEV+IC AV QVR AQPL+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVG
Sbjct: 430 LEVAICHAVFQVRAAQPLQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVG 251
Query: 348 VAQ 340
VAQ
Sbjct: 250 VAQ 242
Score = 52.8 bits (109), Expect(2) = 3e-034
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -2
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 178 KVGGILLHDGP*LEHQRLLLLAED 107
>gb|BQ663933.1|BQ663933 HU04K20u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K20
3-PRIME, mRNA sequence
Length = 485
Score = 228 bits (493), Expect = 3e-059
Identities = 95/108 (87%), Positives = 100/108 (92%)
Frame = +1 / -2
Query: 337 FLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVAD 516
FLRDSDVPLE NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVAD
Sbjct: 484 FLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVAD 305
Query: 517 GHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
GHFEVT FALLETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 304 GHFEVTRFALLETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 161
Score = 185 bits (398), Expect = 3e-046
Identities = 76/108 (70%), Positives = 87/108 (80%)
Frame = +3 / -1
Query: 336 VPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAGRHALEVRRRR 515
VPARLRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAGRHALE+RR R
Sbjct: 485 VPARLRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAGRHALEIRRGR 306
Query: 516 WTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
W LRGD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 305 WPLRGDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 162
Score = 175 bits (376), Expect = 4e-043
Identities = 78/106 (73%), Positives = 83/106 (78%)
Frame = -1 / +2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 164 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 343
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVGVAQ 340
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVGVAQ
Sbjct: 344 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVGVAQ 481
Score = 149 bits (319), Expect = 3e-035
Identities = 73/110 (66%), Positives = 76/110 (69%)
Frame = -2 / +3
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 156 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 335
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSESRRN 336
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSESRRN
Sbjct: 336 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSESRRN 485
>gb|BQ663745.1|BQ663745 HU03N05u HU Hordeum vulgare subsp. vulgare cDNA clone HU03N05
3-PRIME, mRNA sequence
Length = 478
Score = 219 bits (472), Expect = 2e-056
Identities = 91/104 (87%), Positives = 96/104 (92%)
Frame = +1 / -2
Query: 349 SDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFE 528
SDVPLE NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFE
Sbjct: 477 SDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFE 298
Query: 529 VTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
VT FALLETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 297 VTRFALLETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 166
Score = 176 bits (378), Expect = 2e-043
Identities = 72/104 (69%), Positives = 83/104 (79%)
Frame = +3 / -1
Query: 348 LRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAGRHALEVRRRRWTLR 527
LRRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAGRHALE+RR RW LR
Sbjct: 478 LRRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAGRHALEIRRGRWPLR 299
Query: 528 GDGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
GD VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 298 GDAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 167
Score = 169 bits (363), Expect = 2e-041
Identities = 75/103 (72%), Positives = 80/103 (77%)
Frame = -1 / +1
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 169 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 348
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVG 349
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVG
Sbjct: 349 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVG 477
Score = 139 bits (299), Expect = 2e-032
Identities = 69/106 (65%), Positives = 72/106 (67%)
Frame = -2 / +2
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 161 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 340
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTSE 348
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTSE
Sbjct: 341 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTSE 478
>gb|BG299715.2|BG299715 HVSMEa0021I06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021I06f, mRNA sequence
Length = 814
Score = 218 bits (470), Expect = 4e-056
Identities = 91/130 (70%), Positives = 107/130 (82%)
Frame = +1 / +3
Query: 166 AGMALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLR 345
+G A +GAVVF EE+EALVLKSWA+MKKD+ANLGLRFFLK+FEIAPSA+QMF FLR
Sbjct: 162 SGKEAMSAAEGAVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLR 341
Query: 346 DSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHF 525
DSDVPLE NPKLKTHA SVF+MTC+AAA ++K G +TV ETTL +LG HLRYG++ GH
Sbjct: 342 DSDVPLETNPKLKTHAESVFIMTCKAAAHVQKVG*ITVWETTLNKLGCAHLRYGMSYGHL 521
Query: 526 EVTGFALLET 555
V F L+ET
Sbjct: 522 VVPSFPLVET 551
Score = 149 bits (319), Expect = 3e-035
Identities = 69/101 (68%), Positives = 72/101 (71%)
Frame = -2 / -1
Query: 539 NPVTSKCPSATPYLKCVAPSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSS 360
N T+K P PYLKC PSL VVS TV P +CAAA QV+ KTD A V SLG SS
Sbjct: 535 NEGTTKWPYDMPYLKCAQPSLFRVVSQTVI*PTF*TCAAALQVIMKTDSAWVFSLGLVSS 356
Query: 359 GTSESRRNENICFADGAISKTLRKKRRPRLAASFFMTAHDL 237
GTSESRRN NIC ADGAISK LRKKR PRLA SFFM AHDL
Sbjct: 355 GTSESRRNGNICLADGAISKILRKKRSPRLAESFFMMAHDL 233
Score = 108 bits (230), Expect = 5e-023
Identities = 48/87 (55%), Positives = 60/87 (68%)
Frame = +3 / +2
Query: 306 DRAVGEADVLVPARLRRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAG 485
DRAVGEADV VPARLRRAAG++PQA+D R VRL +DL+GG A + R HR GDH + AG
Sbjct: 302 DRAVGEADVPVPARLRRAAGDQPQAEDPRRVRLHNDLQGGCACSESRLDHRLGDHPE*AG 481
Query: 486 RHALEVRRRRWTLRGDGVRAA*DDQGG 566
AL++R W L + D++GG
Sbjct: 482 LCALKIRHVIWPLSSAFIPVGRDERGG 562
Score = 91.3 bits (193), Expect(2) = 6e-028
Identities = 45/72 (62%), Positives = 51/72 (70%)
Frame = -1 / -3
Query: 555 RLKQREPRHLEVSICDAVPQVRGAQPLERGLPHGDLPGLAELRRRLAGHDEDGHGVRLEL 376
RL QRE RH V+I AV VR AQ ++ GLP+GDL +R RLAGH EDG GV L+L
Sbjct: 551 RLDQRE*RHY*VAI*HAVS*VRTAQLIQGGLPNGDLTDFLNMRSRLAGHYEDGLGVGLQL 372
Query: 375 GVLLQRHVGVAQ 340
GV LQRHVGVAQ
Sbjct: 371 GVGLQRHVGVAQ 336
Score = 52.8 bits (109), Expect(2) = 6e-028
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1 / -3
Query: 276 QVGGVLLHDGPRLEHQRLLLLAED 205
+VGG+LLHDGP LEHQRLLLLAED
Sbjct: 272 KVGGILLHDGP*LEHQRLLLLAED 201
>gb|AL502861.1|AL502861 AL502861 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08P10u 3', mRNA sequence
Length = 549
Score = 217 bits (468), Expect = 8e-056
Identities = 90/103 (87%), Positives = 95/103 (92%)
Frame = +1 / -1
Query: 352 DVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEV 531
DVPLE NPKLKTHA+SVFVMTCEAAAQLRKAGK+TVRETTLKRLG THL+YGVADGHFEV
Sbjct: 507 DVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEV 328
Query: 532 TGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKP 660
T FALLETIKEALPADMW EM+ AW EAY QLVAAIK+EMKP
Sbjct: 327 TRFALLETIKEALPADMWGPEMRNAWGEAYDQLVAAIKQEMKP 199
Score = 174 bits (374), Expect = 7e-043
Identities = 71/103 (68%), Positives = 82/103 (79%)
Frame = +3 / -3
Query: 351 RRAAGEEPQAQDARHVRLRHDLRGGGAAPQGREGHREGDHAQEAGRHALEVRRRRWTLRG 530
RRAAG++PQAQD R VRLRHDLRGG A + R+ HR+GDH +EAGRHALE+RR RW LRG
Sbjct: 508 RRAAGDQPQAQDPRRVRLRHDLRGGCAVAESRQDHRQGDHPEEAGRHALEIRRGRWPLRG 329
Query: 531 DGVRAA*DDQGGAPR*HVEPRDEESLGRGLQPAGGGHQAGDEA 659
D VR+A DDQGGA *HV RDEE +GRG++ G GHQA DEA
Sbjct: 328 DAVRSARDDQGGASG*HVGARDEERVGRGIRSTGRGHQARDEA 200
Score = 169 bits (363), Expect = 2e-041
Identities = 75/103 (72%), Positives = 80/103 (77%)
Frame = -1 / +1
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 202 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 381
Query: 477 LERGLPHGDLPGLAELRRRLAGHDEDGHGVRLELGVLLQRHVG 349
L+ GLP GDL G +LR RLAGHDEDGHGV LELGV LQRHVG
Sbjct: 382 LQGGLPDGDLAGFPQLRSRLAGHDEDGHGVGLELGVGLQRHVG 510
Score = 137 bits (294), Expect = 8e-032
Identities = 68/105 (64%), Positives = 71/105 (67%)
Frame = -2 / +2
Query: 665 ASGFISRLMAATSWL*ASAQAFFISRLHMXXXXXXXXXXXXANPVTSKCPSATPYLKCVA 486
++GFIS LMAATS AS AF IS HM AN VTSK PSATPY KCV
Sbjct: 194 SAGFISCLMAATS*SYASPHAFLISGPHMSAGSASLIVSSRANRVTSKWPSATPYFKCVP 373
Query: 485 PSLLSVVSLTVTFPALRSCAAASQVMTKTDMACVLSLGFFSSGTS 351
PSL VVSLTV PA R+CAAASQVMTKTD A VLSLG SSGTS
Sbjct: 374 PSLFRVVSLTVILPAFRNCAAASQVMTKTDTAWVLSLGLVSSGTS 508
>gb|CA009955.1|CA009955 HT12D15u HT Hordeum vulgare subsp. vulgare cDNA clone HT12D15
3-PRIME, mRNA sequence
Length = 394
Score = 162 bits (348), Expect = 3e-039
Identities = 67/78 (85%), Positives = 71/78 (91%)
Frame = +1 / -1
Query: 427 AQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKA 606
AQLRKAGK+TVRETTLKRLG THL+YGVADGHFEVT FALLETIKEALPADMW EM+ A
Sbjct: 394 AQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKEALPADMWGPEMRNA 215
Query: 607 WAEAYSQLVAAIKREMKP 660
W EAY QLVAAIK+EMKP
Sbjct: 214 WGEAYDQLVAAIKQEMKP 161
Score = 124 bits (265), Expect = 8e-028
Identities = 50/77 (64%), Positives = 59/77 (76%)
Frame = +3 / -3
Query: 429 AAPQGREGHREGDHAQEAGRHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESL 608
A + R+ HR+GDH +EAGRHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +
Sbjct: 392 AVAESRQDHRQGDHPEEAGRHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERV 213
Query: 609 GRGLQPAGGGHQAGDEA 659
GRG++ G GHQA DEA
Sbjct: 212 GRGIRSTGRGHQARDEA 162
Score = 116 bits (247), Expect = 2e-025
Identities = 52/77 (67%), Positives = 57/77 (74%)
Frame = -1 / +2
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 164 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 343
Query: 477 LERGLPHGDLPGLAELR 427
L+ GLP GDL G +LR
Sbjct: 344 LQGGLPDGDLAGFPQLR 394
>gb|BI777666.2|BI777666 EBro08_SQ001_E09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_E09 5', mRNA sequence
Length = 488
Score = 150 bits (322), Expect = 1e-035
Identities = 61/73 (83%), Positives = 66/73 (90%)
Frame = +1 / +3
Query: 442 AGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAY 621
+GK+TVRETTLKRLG THL+YGVADGHFEVT FALLETIKEALPADMW EM+ AW EAY
Sbjct: 15 SGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKEALPADMWGPEMRNAWGEAY 194
Query: 622 SQLVAAIKREMKP 660
QLVAAIK+EMKP
Sbjct: 195 DQLVAAIKQEMKP 233
Score = 124 bits (265), Expect = 8e-028
Identities = 50/75 (66%), Positives = 59/75 (78%)
Frame = +3 / +2
Query: 435 PQGREGHREGDHAQEAGRHALEVRRRRWTLRGDGVRAA*DDQGGAPR*HVEPRDEESLGR 614
P+ R+ HR+GDH +EAGRHALE+RR RW LRGD VR+A DDQGGA *HV RDEE +GR
Sbjct: 8 PRVRQDHRQGDHPEEAGRHALEIRRGRWPLRGDAVRSARDDQGGASG*HVGARDEERVGR 187
Query: 615 GLQPAGGGHQAGDEA 659
G++ G GHQA DEA
Sbjct: 188 GIRSTGRGHQARDEA 232
Score = 111 bits (237), Expect = 6e-024
Identities = 50/72 (69%), Positives = 54/72 (75%)
Frame = -1 / -1
Query: 657 LHLPLDGRHQLAVGLGPGFLHLEAPHVSGERLLDRLKQREPRHLEVSICDAVPQVRGAQP 478
LHL LDGR QL V L P HL PHVS +RLLDRL+Q EPRHLEV+IC AV QVR AQP
Sbjct: 230 LHLLLDGRDQLIVCLAPRVPHLGPPHVSRKRLLDRLEQSEPRHLEVAICHAVFQVRAAQP 51
Query: 477 LERGLPHGDLPG 442
L+ GLP GDL G
Sbjct: 50 LQGGLPDGDLAG 15
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 317,657,173
Number of Sequences: 312970
Number of extensions: 4812995
Number of successful extensions: 56282
Number of sequences better than 1.0e-020: 22
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10189104838
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)