TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763158.2.1
(826 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 90 1e-036
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 90 1e-036
gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. v... 129 2e-036
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 90 2e-036
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 90 4e-036
gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA,... 127 5e-036
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 90 2e-035
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 90 2e-035
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 90 6e-035
gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA,... 119 2e-033
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 92 2e-033
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 92 2e-033
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 90 4e-033
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 90 1e-032
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 90 1e-032
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 90 1e-032
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 90 2e-032
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 72 1e-031
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 87 1e-031
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 64 5e-031
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 90 8e-031
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 90 8e-031
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 90 8e-031
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 90 8e-031
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 90 8e-031
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 90 8e-031
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 90 8e-031
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 90 8e-031
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 90 8e-031
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 78 2e-030
gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedl... 100 2e-030
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 86 3e-030
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 86 3e-030
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 88 3e-030
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 84 5e-030
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 90 7e-030
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 90 7e-030
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 86 2e-029
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 78 6e-028
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 90 4e-027
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 90 4e-027
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 90 4e-027
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 86 5e-027
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 86 5e-027
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 86 5e-027
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 86 5e-027
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 86 2e-026
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 64 2e-026
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 80 3e-026
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 85 5e-026
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 83 9e-026
gb|BQ472448.1|BQ472448 HB09J14T BC Hordeum vulgare subsp. v... 116 2e-025
gb|BQ472509.1|BQ472509 HB09F20T BC Hordeum vulgare subsp. v... 116 2e-025
gb|BU968389.1|BU968389 HB07F20r BC Hordeum vulgare subsp. v... 115 3e-025
gb|BU968461.1|BU968461 HB07J14r BC Hordeum vulgare subsp. v... 115 3e-025
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 82 3e-025
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 85 4e-025
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 86 6e-025
gb|BF254222.2|BF254222 HVSMEf0003F20f Hordeum vulgare seedl... 72 6e-025
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 90 5e-024
gb|BJ468562.1|BJ468562 BJ468562 K. Sato unpublished cDNA li... 111 7e-024
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 76 7e-024
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 86 1e-023
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 82 3e-023
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 79 5e-023
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 79 9e-023
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 105 2e-022
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 54 3e-022
gb|BQ756549.1|BQ756549 EBem09_SQ003_A16_R embryo, 1 Day ger... 105 4e-022
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 82 7e-021
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 90.0 bits (190), Expect(3) = 1e-036
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 358 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 537
Query: 516 YVDRN 530
YVD N
Sbjct: 538 YVDFN 552
Score = 63.8 bits (133), Expect(3) = 1e-036
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 217 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 348
Score = 37.7 bits (76), Expect(3) = 1e-036
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3 / +1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
+ERLP FT E + + GS D +G+N YT+ K
Sbjct: 46 KERLPKFTPAEAKMVKGSADYIGINQYTASLMK 144
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 90.0 bits (190), Expect(3) = 1e-036
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 384 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 563
Query: 516 YVDRN 530
YVD N
Sbjct: 564 YVDFN 578
Score = 63.8 bits (133), Expect(3) = 1e-036
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 243 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 374
Score = 37.7 bits (76), Expect(3) = 1e-036
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3 / +3
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
+ERLP FT E + + GS D +G+N YT+ K
Sbjct: 72 KERLPKFTPAEAKMVKGSADYIGINQYTASLMK 170
>gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11I05
5-PRIME, mRNA sequence
Length = 655
Score = 129 bits (276), Expect(2) = 2e-036
Identities = 44/121 (36%), Positives = 77/121 (63%)
Frame = +3 / +1
Query: 168 SQETNGPDGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
S T DG P+GP ++++YP G+ +L++ K +Y NP +Y+ ENG+ + ++ LP
Sbjct: 211 SNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLP 390
Query: 348 MEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDR 527
++ AL D R++Y +H+ L + N++GYF W+ +D FEW GY +R+G++Y+DR
Sbjct: 391 IKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGLIYIDR 570
Query: 528 N 530
+
Sbjct: 571 S 573
Score = 43.7 bits (89), Expect(2) = 2e-036
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFS 107
R RLP FT + L GSYD +GLNYYT+ ++
Sbjct: 58 RARLPAFTPAQTAALRGSYDFVGLNYYTTYYA 153
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 89.5 bits (189), Expect(3) = 2e-036
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 511 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSXKFGIV 690
Query: 516 YVDRN 530
YVD N
Sbjct: 691 YVDFN 705
Score = 63.8 bits (133), Expect(3) = 2e-036
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 370 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 501
Score = 37.7 bits (76), Expect(3) = 2e-036
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3 / +1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
+ERLP FT E + + GS D +G+N YT+ K
Sbjct: 199 KERLPKFTPAEAKMVKGSADYIGINQYTASLMK 297
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 90.0 bits (190), Expect(3) = 4e-036
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 405 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 226
Query: 516 YVDRN 530
YVD N
Sbjct: 225 YVDFN 211
Score = 63.8 bits (133), Expect(3) = 4e-036
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 546 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 415
Score = 35.9 bits (72), Expect(3) = 4e-036
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3 / -2
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
RLP FT E + ++GS D +G+N YT+ K
Sbjct: 711 RLPKFTPAEAKMVMGSADYIGINQYTASLMK 619
>gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L05 5', mRNA sequence
Length = 616
Score = 127 bits (272), Expect(2) = 5e-036
Identities = 44/121 (36%), Positives = 76/121 (62%)
Frame = +3 / +1
Query: 168 SQETNGPDGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
S T DG P+GP ++++YP G+ +L++ K +Y NP +Y+ ENG+ + ++ LP
Sbjct: 229 SNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLP 408
Query: 348 MEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDR 527
++ AL D R++Y +H+ L + N++GYF W+ +D FEW GY +R G++Y+DR
Sbjct: 409 IKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRXGLIYIDR 588
Query: 528 N 530
+
Sbjct: 589 S 591
Score = 43.7 bits (89), Expect(2) = 5e-036
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFS 107
R RLP FT + L GSYD +GLNYYT+ ++
Sbjct: 76 RARLPAFTPAQTAALRGSYDFVGLNYYTTYYA 171
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 90.0 bits (190), Expect(3) = 2e-035
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 409 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 230
Query: 516 YVDRN 530
YVD N
Sbjct: 229 YVDFN 215
Score = 63.8 bits (133), Expect(3) = 2e-035
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
Score = 33.6 bits (67), Expect(3) = 2e-035
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / -2
Query: 21 LPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
LP FT E + ++GS D +G+N YT+ K
Sbjct: 713 LPKFTPAEAKMVMGSADYIGINQYTASLMK 624
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 90.0 bits (190), Expect(3) = 2e-035
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 388 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 209
Query: 516 YVDRN 530
YVD N
Sbjct: 208 YVDFN 194
Score = 63.8 bits (133), Expect(3) = 2e-035
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
Score = 33.6 bits (67), Expect(3) = 2e-035
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / -1
Query: 21 LPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
LP FT E + ++GS D +G+N YT+ K
Sbjct: 691 LPKFTPAEAKMVMGSADYIGINQYTASLMK 602
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 90.0 bits (190), Expect(3) = 6e-035
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 388 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 209
Query: 516 YVDRN 530
YVD N
Sbjct: 208 YVDFN 194
Score = 63.8 bits (133), Expect(3) = 6e-035
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
Score = 31.8 bits (63), Expect(3) = 6e-035
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / -1
Query: 24 PFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
P FT E + ++GS D +G+N YT+ K
Sbjct: 688 PKFTPAEAKMVMGSADYIGINQYTASLMK 602
>gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_D03 5', mRNA sequence
Length = 695
Score = 119 bits (254), Expect(2) = 2e-033
Identities = 41/116 (35%), Positives = 72/116 (62%)
Frame = +3 / +3
Query: 168 SQETNGPDGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLP 347
S T DG P+GP ++++YP G+ +L++ K +Y NP +Y+ ENG+ + ++ LP
Sbjct: 348 SNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLP 527
Query: 348 MEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
++ AL D R++Y +H+ L + N++GYF W+ +D FEW GY +R+G++
Sbjct: 528 IKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGLI 695
Score = 43.7 bits (89), Expect(2) = 2e-033
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3 / +3
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFS 107
R RLP FT + L GSYD +GLNYYT+ ++
Sbjct: 195 RARLPAFTPAQTAALRGSYDFVGLNYYTTYYA 290
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 92.3 bits (195), Expect(3) = 2e-033
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +3 / -1
Query: 339 DLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVY 518
+L E L D RV + + ++A LK++ D GANV GYFAWSLLDNFEW SGYT ++GIVY
Sbjct: 299 NLTREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVY 120
Query: 519 VD 524
VD
Sbjct: 119 VD 114
Score = 50.6 bits (104), Expect(3) = 2e-033
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIG ++W+Y+ P G+ + ++ KY NP I I+ENGM
Sbjct: 443 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGM 312
Score = 37.7 bits (76), Expect(3) = 2e-033
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3 / -1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
+ERLP FT ++ + + GS D +G+N YT+ +
Sbjct: 614 KERLPSFTPEQSKLVKGSVDYIGINQYTATY 522
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 92.3 bits (195), Expect(3) = 2e-033
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +3 / +1
Query: 339 DLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVY 518
+L E L D RV + + ++A LK++ D GANV GYFAWSLLDNFEW SGYT ++GIVY
Sbjct: 388 NLTREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVY 567
Query: 519 VD 524
VD
Sbjct: 568 VD 573
Score = 50.6 bits (104), Expect(3) = 2e-033
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIG ++W+Y+ P G+ + ++ KY NP I I+ENGM
Sbjct: 244 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGM 375
Score = 37.7 bits (76), Expect(3) = 2e-033
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3 / +1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRF 104
+ERLP FT ++ + + GS D +G+N YT+ +
Sbjct: 73 KERLPSFTPEQSKLVKGSVDYIGINQYTATY 165
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 90.0 bits (190), Expect(3) = 4e-033
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 387 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 208
Query: 516 YVDRN 530
YVD N
Sbjct: 207 YVDFN 193
Score = 63.8 bits (133), Expect(3) = 4e-033
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 528 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 397
Score = 25.8 bits (50), Expect(3) = 4e-033
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3 / -1
Query: 42 EQEKLVGSYDMLGLNYYTSRFSK 110
E + ++GS D +G+N YT+ K
Sbjct: 670 EAKMVMGSADYIGINQYTASLMK 602
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 90.0 bits (190), Expect(3) = 1e-032
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 414 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 235
Query: 516 YVDRN 530
YVD N
Sbjct: 234 YVDFN 220
Score = 63.8 bits (133), Expect(3) = 1e-032
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 555 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 424
Score = 24.0 bits (46), Expect(3) = 1e-032
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3 / -1
Query: 54 LVGSYDMLGLNYYTSRFSK 110
++GS D +G+N YT+ K
Sbjct: 684 VMGSADYIGINQYTASLMK 628
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 90.0 bits (190), Expect(3) = 1e-032
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 400 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 221
Query: 516 YVDRN 530
YVD N
Sbjct: 220 YVDFN 206
Score = 63.8 bits (133), Expect(3) = 1e-032
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 541 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 410
Score = 24.0 bits (46), Expect(3) = 1e-032
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3 / -3
Query: 54 LVGSYDMLGLNYYTSRFSK 110
++GS D +G+N YT+ K
Sbjct: 671 VMGSADYIGINQYTASLMK 615
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 90.0 bits (190), Expect(3) = 1e-032
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 383 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 204
Query: 516 YVDRN 530
YVD N
Sbjct: 203 YVDFN 189
Score = 63.8 bits (133), Expect(3) = 1e-032
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 524 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 393
Score = 24.0 bits (46), Expect(3) = 1e-032
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3 / -1
Query: 54 LVGSYDMLGLNYYTSRFSK 110
++GS D +G+N YT+ K
Sbjct: 653 VMGSADYIGINQYTASLMK 597
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 90.0 bits (190), Expect(3) = 2e-032
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 419 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 240
Query: 516 YVDRN 530
YVD N
Sbjct: 239 YVDFN 225
Score = 63.8 bits (133), Expect(3) = 2e-032
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 560 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 429
Score = 23.5 bits (45), Expect(3) = 2e-032
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3 / -3
Query: 57 VGSYDMLGLNYYTSRFSK 110
+GS D +G+N YT+ K
Sbjct: 686 MGSADYIGINQYTASLMK 633
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 71.6 bits (150), Expect(3) = 1e-031
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +3 / +2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGY 494
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY
Sbjct: 593 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGY 751
Score = 63.8 bits (133), Expect(3) = 1e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 452 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 583
Score = 39.1 bits (79), Expect(3) = 1e-031
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3 / +2
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
+ERLP FT E + ++GS D +G+N YT+ K
Sbjct: 281 KERLPKFTPAEAKMVMGSADYIGINQYTASLMK 379
>gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_D19 5', mRNA sequence
Length = 480
Score = 86.8 bits (183), Expect(3) = 1e-031
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +3 / +1
Query: 327 VDHGDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERY 506
+ G L + L D RV + + +++ LK++ D GANV GYFAWSLL NFEW SGY+ ++
Sbjct: 271 IXPGGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLXNFEWMSGYSSKF 450
Query: 507 GIVYVDRN 530
GIVYVD N
Sbjct: 451 GIVYVDFN 474
Score = 63.8 bits (133), Expect(3) = 1e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 138 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 269
Score = 24.0 bits (46), Expect(3) = 1e-031
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 54 LVGSYDMLGLNYYTSRFSK 110
++GS D +G+N YT+ K
Sbjct: 9 VMGSADYIGINQYTASLMK 65
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 63.8 bits (133), Expect(4) = 5e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 283 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 414
Score = 52.8 bits (109), Expect(4) = 5e-031
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 450 FAWSLLDNFEWFSGYTERYGIVYVDRND 533
FA SLLDNFEW +GY+ ++GIVYVD N+
Sbjct: 539 FAGSLLDNFEWMAGYSSKFGIVYVDFNN 622
Score = 39.1 bits (79), Expect(4) = 5e-031
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3 / +1
Query: 12 RERLPFFTDKEQEKLVGSYDMLGLNYYTSRFSK 110
+ERLP FT E + ++GS D +G+N YT+ K
Sbjct: 112 KERLPKFTPAEAKMVMGSADYIGINQYTASLMK 210
Score = 34.1 bits (68), Expect(4) = 5e-031
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYF 452
G L + L D RV + + ++ LK++ D GANV G+F
Sbjct: 424 GGLTRDQYLRDTTRVRFYRSYLIELKKAIDSGANVLGFF 540
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 409 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 230
Query: 516 YVDRN 530
YVD N
Sbjct: 229 YVDFN 215
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 388 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 209
Query: 516 YVDRN 530
YVD N
Sbjct: 208 YVDFN 194
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 408 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 229
Query: 516 YVDRN 530
YVD N
Sbjct: 228 YVDFN 214
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 549 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 418
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 414 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 235
Query: 516 YVDRN 530
YVD N
Sbjct: 234 YVDFN 220
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 555 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 424
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 406 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 227
Query: 516 YVDRN 530
YVD N
Sbjct: 226 YVDFN 212
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 547 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 416
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 177 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 356
Query: 516 YVDRN 530
YVD N
Sbjct: 357 YVDFN 371
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 36 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 167
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 409 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 230
Query: 516 YVDRN 530
YVD N
Sbjct: 229 YVDFN 215
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 277 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 456
Query: 516 YVDRN 530
YVD N
Sbjct: 457 YVDFN 471
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 136 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 267
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 90.0 bits (190), Expect(2) = 8e-031
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 158 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 337
Query: 516 YVDRN 530
YVD N
Sbjct: 338 YVDFN 352
Score = 63.8 bits (133), Expect(2) = 8e-031
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 17 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 148
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 77.6 bits (163), Expect(2) = 2e-030
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDD 368
+G IG + W+Y+ P G++ L+ +KN+Y +PPIYITENGM D + + ++ AL D
Sbjct: 104 NGRAIGDRANSIWLYIVPRGMRSLMNYVKNRYNSPPIYITENGMDDSNSPFIALKDALKD 283
Query: 369 HKRVHYLQRHIATLKES 419
KR+ Y ++ L S
Sbjct: 284 TKRIKYHNDYLTNLAAS 334
Score = 75.3 bits (158), Expect(2) = 2e-030
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +3 / +2
Query: 429 GANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRS 560
G +V+GYFAWSLLDN+EW +GY+ R+G+ +VD ND KRY K S
Sbjct: 347 GCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYNDKLKRYPKSS 478
>gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017P19f, mRNA sequence
Length = 888
Score = 100 bits (213), Expect(2) = 2e-030
Identities = 41/117 (35%), Positives = 69/117 (58%)
Frame = +3 / +2
Query: 174 ETNGPDGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPME 353
+T +G PIGP + YP GL++LL+ ++ YGN PIYITE G + ++ +P++
Sbjct: 536 QTGYRNGVPIGPPAFSPVFLNYPPGLRELLLYIRRIYGNRPIYITEXGTDEANNSTIPIK 715
Query: 354 VALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVD 524
AL D R+ + H+ L ++ G NV+GY W+ D+FE+ G+ +R ++ +D
Sbjct: 716 EALKDDTRIFFHVNHLKFLHKAIQEGVNVEGYITWTFPDDFEFGDGFKDRVRLI*LD 886
Score = 51.9 bits (107), Expect(2) = 2e-030
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +3 / +2
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKNIDISPN 131
RLP FT ++ E L GSYD LGLNYYTS +++ PN
Sbjct: 383 RLPEFTKEQSEMLKGSYDFLGLNYYTSNYAQAAARPPN 496
>gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_J07 5', mRNA sequence
Length = 642
Score = 86.3 bits (182), Expect(3) = 3e-030
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 300 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 479
Query: 516 YVDRN 530
YVD N
Sbjct: 480 YVDFN 494
Score = 54.7 bits (113), Expect(3) = 3e-030
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 159 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 290
Score = 29.0 bits (57), Expect(3) = 3e-030
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3 / +3
Query: 30 FTDKEQEKLVGSYDMLGLNYYTSRFSKN 113
F+ E + GS D +G+N YTS + K+
Sbjct: 6 FSADESRMVKGSIDYVGINQYTSYYMKD 89
>gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. vulgare cDNA clone HF12O16
5-PRIME, mRNA sequence
Length = 615
Score = 86.3 bits (182), Expect(3) = 3e-030
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 310 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 489
Query: 516 YVDRN 530
YVD N
Sbjct: 490 YVDFN 504
Score = 54.7 bits (113), Expect(3) = 3e-030
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 169 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 300
Score = 29.0 bits (57), Expect(3) = 3e-030
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3 / +1
Query: 30 FTDKEQEKLVGSYDMLGLNYYTSRFSKN 113
F+ E + GS D +G+N YTS + K+
Sbjct: 16 FSADESRMVKGSIDYVGINQYTSYYMKD 99
>gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8l06 5', mRNA sequence
Length = 474
Score = 88.1 bits (186), Expect(2) = 3e-030
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAW LLDNFEW SGY+ ++GIV
Sbjct: 271 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWXLLDNFEWMSGYSSKFGIV 450
Query: 516 YVDRN 530
YVD N
Sbjct: 451 YVDFN 465
Score = 63.8 bits (133), Expect(2) = 3e-030
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 130 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 261
>gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 3', mRNA sequence
Length = 709
Score = 84.5 bits (178), Expect(3) = 5e-030
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +3 / -2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D RV Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 399 GNVSITDGVQDTVRVRYYRDYITELKKAIDDGARVIGYFAWSLLDNFEWRLGYTARFGIV 220
Query: 516 YVD 524
YVD
Sbjct: 219 YVD 211
Score = 50.1 bits (103), Expect(3) = 5e-030
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3 / -2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIG + W+Y+ P G+ + +K +YGNP + + ENGM
Sbjct: 540 NGVPIGAHANSYWLYIVPWGINKAVTYVKERYGNPTMILAENGM 409
Score = 34.5 bits (69), Expect(3) = 5e-030
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3 / -2
Query: 18 RLPFFTDKEQEKLVGSYDMLGLNYYTSRFSKN 113
RLP F+ E + GS D +G+N YTS + K+
Sbjct: 705 RLPRFSADESTMIKGSIDYVGINQYTSFYMKD 610
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 90.0 bits (190), Expect(2) = 7e-030
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 429 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 250
Query: 516 YVDRN 530
YVD N
Sbjct: 249 YVDFN 235
Score = 60.6 bits (126), Expect(2) = 7e-030
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3 / -1
Query: 198 PIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 561 PIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 439
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 90.0 bits (190), Expect(2) = 7e-030
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 388 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 209
Query: 516 YVDRN 530
YVD N
Sbjct: 208 YVDFN 194
Score = 60.6 bits (126), Expect(2) = 7e-030
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3 / -1
Query: 198 PIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 520 PIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF04E16
5-PRIME, mRNA sequence
Length = 590
Score = 86.3 bits (182), Expect(3) = 2e-029
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +2
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 266 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 445
Query: 516 YVDRN 530
YVD N
Sbjct: 446 YVDFN 460
Score = 54.7 bits (113), Expect(3) = 2e-029
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 125 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 256
Score = 25.8 bits (50), Expect(3) = 2e-029
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3 / +2
Query: 60 GSYDMLGLNYYTSRFSKN 113
GS D +G+N YTS + K+
Sbjct: 2 GSIDYVGINQYTSYYMKD 55
>gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45F22
5-PRIME, mRNA sequence
Length = 450
Score = 77.6 bits (163), Expect(2) = 6e-028
Identities = 29/76 (38%), Positives = 48/76 (63%)
Frame = +3 / +2
Query: 192 GNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDH 371
G IG +SW+++ P G+ L+ +K+KYGNPP++ITENGM D + +E L D+
Sbjct: 89 GKRIGETAASSWLHIVPWGMFSLMKHVKDKYGNPPVFITENGMDDANSRFSKLETVLQDN 268
Query: 372 KRVHYLQRHIATLKES 419
KR+ Y +++ L ++
Sbjct: 269 KRIQYHNDYMSNLLDA 316
Score = 66.6 bits (139), Expect(2) = 6e-028
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +3 / +2
Query: 420 RDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKR 545
R G N++GYF WSLLDN+EW SGYT R+G+ Y+D ++ R
Sbjct: 320 RKEGCNIRGYFVWSLLDNWEWNSGYTVRFGLYYIDYDNNLTR 445
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 90.0 bits (190), Expect(2) = 4e-027
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 135 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 314
Query: 516 YVDRN 530
YVD N
Sbjct: 315 YVDFN 329
Score = 51.5 bits (106), Expect(2) = 4e-027
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3 / +3
Query: 219 NSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 24 SNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 125
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 90.0 bits (190), Expect(2) = 4e-027
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 415 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 236
Query: 516 YVDRN 530
YVD N
Sbjct: 235 YVDFN 221
Score = 51.5 bits (106), Expect(2) = 4e-027
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3 / -3
Query: 219 NSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 526 SNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 425
>gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D12, mRNA sequence
Length = 1134
Score = 90.0 bits (190), Expect(3) = 4e-027
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / +3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G L + L D RV + + +++ LK++ D GANV GYFAWSLLDNFEW SGY+ ++GIV
Sbjct: 201 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIV 380
Query: 516 YVDRN 530
YVD N
Sbjct: 381 YVDFN 395
Score = 36.8 bits (74), Expect(3) = 4e-027
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3 / +3
Query: 270 MKNKYGNPPIYITENGM 320
+ KYGNPPI ITENGM
Sbjct: 141 LSQKYGNPPIVITENGM 191
Score = 32.2 bits (64), Expect(3) = 4e-027
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNP 293
+G PIGP ++W+Y+ P G+ L + + + P
Sbjct: 59 NGMPIGPKANSNWLYIVPSGMFGLRALPQPEVREP 163
>gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I038 5-PRIME, mRNA sequence
Length = 655
Score = 86.3 bits (182), Expect(2) = 5e-027
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 235 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 414
Query: 516 YVDRN 530
YVD N
Sbjct: 415 YVDFN 429
Score = 54.7 bits (113), Expect(2) = 5e-027
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 94 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 225
>gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B16
5-PRIME, mRNA sequence
Length = 611
Score = 86.3 bits (182), Expect(2) = 5e-027
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 184 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 363
Query: 516 YVDRN 530
YVD N
Sbjct: 364 YVDFN 378
Score = 54.7 bits (113), Expect(2) = 5e-027
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 43 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 174
>gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025H09f, mRNA sequence
Length = 565
Score = 86.3 bits (182), Expect(2) = 5e-027
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 193 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 372
Query: 516 YVDRN 530
YVD N
Sbjct: 373 YVDFN 387
Score = 54.7 bits (113), Expect(2) = 5e-027
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 52 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 183
>gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K11f, mRNA sequence
Length = 503
Score = 86.3 bits (182), Expect(2) = 5e-027
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / +1
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 208 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 387
Query: 516 YVDRN 530
YVD N
Sbjct: 388 YVDFN 402
Score = 54.7 bits (113), Expect(2) = 5e-027
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP + W+Y+ P G+ + +K +YGNP + ++ENGM
Sbjct: 67 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 198
>gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006L16f, mRNA sequence
Length = 833
Score = 86.3 bits (182), Expect(2) = 2e-026
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIV 515
G++ + + D R+ Y + +I LK++ D GA V GYFAWSLLDNFEW GYT R+GIV
Sbjct: 597 GNVSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIV 418
Query: 516 YVDRN 530
YVD N
Sbjct: 417 YVDFN 403
Score = 52.8 bits (109), Expect(2) = 2e-026
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIG + W Y+ P G+ + +K +YGNPP+ ++ENGM
Sbjct: 738 NGVPIGLRANSDWFYIVPWGMNKAVTYVKERYGNPPMILSENGM 607
>gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. vulgare cDNA clone HI09A13
3-PRIME, mRNA sequence
Length = 680
Score = 63.8 bits (133), Expect(3) = 2e-026
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
+G PIGP ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 582 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 451
Score = 46.4 bits (95), Expect(3) = 2e-026
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 465 LDNFEWFSGYTERYGIVYVDRN 530
LDNFEW SGY+ ++GIVYVD N
Sbjct: 311 LDNFEWMSGYSSKFGIVYVDFN 246
Score = 46.4 bits (95), Expect(3) = 2e-026
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +3 / -3
Query: 336 GDLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSL 464
G L + L D RV + + +++ LK++ D GANV GYFAWSL
Sbjct: 441 GGLTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSL 313
>gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30c23 5', mRNA sequence
Length = 688
Score = 80.3 bits (169), Expect(3) = 3e-026
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +3 / +2
Query: 339 DLPMEVALDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVY 518
D ME ++D RV+YLQ ++ + + GANV+GYF WSL+DNFEW G+T R+G+ Y
Sbjct: 392 DNSMEDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYY 571
Query: 519 VD 524
VD
Sbjct: 572 VD 577
Score = 39.1 bits (79), Expect(3) = 3e-026
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3 / +2
Query: 189 DGNPIGPWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENG 317
DG IG Y PEG++ ++ + +Y N P+Y+TENG
Sbjct: 248 DGVAIGRPTAFPGYYDVPEGMELIVKYVNQRYENAPVYVTENG 376
Score = 36.8 bits (74), Expect(3) = 3e-026
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3 / +2
Query: 21 LPFFTDKEQEKLVGSYDMLGLNYYTSRFSKNIDISP 128
LP FT +E+ L D +G+N+YT+ ++K+ SP
Sbjct: 86 LPTFTSEEKRLLQSKADFIGVNHYTAIYAKDCIASP 193
>gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O09 5', mRNA sequence
Length = 455
Score = 84.9 bits (179), Expect(2) = 5e-026
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = +3 / +3
Query: 360 LDDHKRVHYLQRHIATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRN 530
L D RV + + +++ L + D GANV GYFAWSLLDNFEW SGY+ ++GIVYVD N
Sbjct: 150 LRDTTRVRFYRSYLSELNNAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVDFN 320
Score = 52.8 bits (109), Expect(2) = 5e-026
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3 / +3
Query: 207 PWMGNSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGM 320
P ++W+Y+ P G+ + + KYGNPPI ITENGM
Sbjct: 3 PKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 116
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 427,694,276
Number of Sequences: 312970
Number of extensions: 7393618
Number of successful extensions: 61253
Number of sequences better than 1.0e-020: 98
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9347030058
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)