TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF617544.2|BF617544 HVSMEc0017O16f Hordeum vulgare seedl... 127 5e-029
gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. v... 117 5e-026
gb|BE558795.1|BE558795 HV_CEb0020G12f Hordeum vulgare seedl... 109 1e-023
gb|BQ758546.1|BQ758546 EBma07_SQ002_G03_R maternal, 21 DPA,... 109 1e-023
gb|BQ758625.1|BQ758625 EBma07_SQ002_G09_R maternal, 21 DPA,... 109 1e-023
gb|BQ758717.1|BQ758717 EBma07_SQ002_I14_R maternal, 21 DPA,... 109 1e-023
gb|BQ760943.1|BQ760943 EBro03_SQ003_O16_R root, 3 week, wat... 109 1e-023
gb|CA008548.1|CA008548 HU11E24r HU Hordeum vulgare subsp. v... 109 1e-023
gb|CA025237.1|CA025237 HZ51O06r HZ Hordeum vulgare subsp. v... 109 1e-023
gb|CA030194.1|CA030194 HX06F18r HX Hordeum vulgare subsp. v... 109 1e-023
gb|BI779229.2|BI779229 EBro01_SQ003_G07_R root, 3 week, hyd... 105 1e-022
>gb|BF617544.2|BF617544 HVSMEc0017O16f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017O16f, mRNA sequence
Length = 779
Score = 127 bits (272), Expect = 5e-029
Identities = 50/55 (90%), Positives = 54/55 (98%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKS 579
L+LSTDAKPRLKWTPELH+RFVEA +QLGGPDKATPKTIMRLMG+PGLTLYHLKS
Sbjct: 295 LILSTDAKPRLKWTPELHDRFVEASNQLGGPDKATPKTIMRLMGVPGLTLYHLKS 459
>gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D10
5-PRIME, mRNA sequence
Length = 563
Score = 117 bits (250), Expect = 5e-026
Identities = 46/56 (82%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELH+RFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 220 LVLTTDPKPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 387
>gb|BE558795.1|BE558795 HV_CEb0020G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020G12f, mRNA sequence
Length = 823
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 188 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 355
>gb|BQ758546.1|BQ758546 EBma07_SQ002_G03_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G03 5', mRNA sequence
Length = 678
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 61 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 228
>gb|BQ758625.1|BQ758625 EBma07_SQ002_G09_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G09 5', mRNA sequence
Length = 686
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 61 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 228
>gb|BQ758717.1|BQ758717 EBma07_SQ002_I14_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_I14 5', mRNA sequence
Length = 592
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 61 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 228
>gb|BQ760943.1|BQ760943 EBro03_SQ003_O16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O16 5', mRNA sequence
Length = 540
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 114 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 281
>gb|CA008548.1|CA008548 HU11E24r HU Hordeum vulgare subsp. vulgare cDNA clone HU11E24
5-PRIME, mRNA sequence
Length = 601
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 166 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 333
>gb|CA025237.1|CA025237 HZ51O06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51O06
5-PRIME, mRNA sequence
Length = 578
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 140 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 307
>gb|CA030194.1|CA030194 HX06F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX06F18
5-PRIME, mRNA sequence
Length = 639
Score = 109 bits (233), Expect = 1e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 157 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 324
>gb|BI779229.2|BI779229 EBro01_SQ003_G07_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_G07 5', mRNA sequence
Length = 446
Score = 105 bits (225), Expect = 1e-022
Identities = 41/56 (73%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+W +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 111 LVLTGDPKPRLRWAGDLHERFVDAVAQLGGPEKATPKTILRAMGVKGLTLFHLKSH 278
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 291,665,542
Number of Sequences: 312970
Number of extensions: 4370892
Number of successful extensions: 63754
Number of sequences better than 1.0e-020: 14
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6023172678
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)