TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA030942.1|CA030942 HX08J07r HX Hordeum vulgare subsp. v... 336 e-109
gb|AV933277.1|AV933277 AV933277 K. Sato unpublished cDNA li... 336 9e-095
gb|CA008952.1|CA008952 HU12K18r HU Hordeum vulgare subsp. v... 335 3e-093
gb|BQ470466.1|BQ470466 HX03B03r HX Hordeum vulgare subsp. v... 309 2e-083
gb|AV934271.1|AV934271 AV934271 K. Sato unpublished cDNA li... 168 3e-082
gb|BU987774.1|BU987774 HF15L16r HF Hordeum vulgare subsp. v... 89 2e-071
gb|CA032804.1|CA032804 HX14E02r HX Hordeum vulgare subsp. v... 89 9e-071
gb|BJ472357.1|BJ472357 BJ472357 K. Sato unpublished cDNA li... 82 6e-057
gb|AW983082.3|AW983082 HVSMEg0008A15f Hordeum vulgare pre-a... 78 2e-054
emb|AJ234409.1|HVU234409 Hordeum vulgare partial mRNA; clon... 187 9e-047
gb|CA009554.1|CA009554 HU14H09r HU Hordeum vulgare subsp. v... 116 6e-045
gb|BQ472196.1|BQ472196 HV04L02r HV Hordeum vulgare subsp. v... 116 2e-043
gb|BI955563.1|BI955563 HVSMEm0023J10f Hordeum vulgare green... 78 3e-043
gb|CA024140.1|CA024140 HZ48H14r HZ Hordeum vulgare subsp. v... 142 4e-033
gb|CA023546.1|CA023546 HZ46J12r HZ Hordeum vulgare subsp. v... 82 3e-032
gb|AL506641.1|AL506641 AL506641 Hordeum vulgare Barke devel... 79 3e-025
>gb|CA030942.1|CA030942 HX08J07r HX Hordeum vulgare subsp. vulgare cDNA clone HX08J07
5-PRIME, mRNA sequence
Length = 622
Score = 336 bits (728), Expect(3) = e-109
Identities = 136/149 (91%), Positives = 144/149 (96%)
Frame = +2 / +2
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMT+ PPTQELVAKDLHG++WRFRHIF
Sbjct: 41 VRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHGMDWRFRHIF 220
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLLQSGWSVFVS+KRL AGDAFIFLRG+SGELRVGVRRAMRQ +NVPSSVISSH
Sbjct: 221 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRAMRQLSNVPSSVISSH 400
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMHLGVLATAWHA+NT +MFTVYYKPRTS
Sbjct: 401 SMHLGVLATAWHAINTKSMFTVYYKPRTS 487
Score = 216 bits (466), Expect(3) = 8e-061
Identities = 100/149 (67%), Positives = 109/149 (73%)
Frame = -2 / -2
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL**TVNM+ VL ACHAVARTPRCML L++TE+GT CL+ARLTPTRSSPLSPLRK
Sbjct: 486 LVLGL**TVNMLFVLIACHAVARTPRCML*LEMTEEGTLDSCLIARLTPTRSSPLSPLRK 307
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLATXXXXXXXXXXXXXXX 136
MKASPA L LT TLQPL +RCL G P +WRKR S PCRS AT
Sbjct: 306 MKASPATSLLELTNTLQPL*RRCLLGCPRKIWRKRQSMPCRSFATSSCVGGDWVMSRGGR 127
Query: 135 XXSAWRRSTENPP*VLVSEAVNVLQKECT 49
SAWRRSTE PP VLVS+AV VLQK+ T
Sbjct: 126 HSSAWRRSTEKPPCVLVSDAVRVLQKDRT 40
Score = 154 bits (331), Expect = 8e-037
Identities = 69/149 (46%), Positives = 98/149 (65%)
Frame = -1 / -1
Query: 487 RLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KDEG 308
R VVD +H V+S+PC K+ KMHA+ *R ++ L H P++ TKL T++S ++EG
Sbjct: 478 RFVVDREHAFRVDSVPCSCKDPKMHAMTRND*RRHVGQLSHSPPNTNTKLATLSSEENEG 299
Query: 307 ISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKTLI 128
I S K GT+K+TP L++MP L +E +A+AP H MQ+L +KLLCW GH+Q R+ L+
Sbjct: 298 IPSYKPFGTDKHTPTALKEMPPRLPTEDMAEAPVHAMQILCHKLLCWGRLGHVQGREALV 119
Query: 127 CMAPQHRESTMSAGIRGCQCLAEGVHAWP 41
+A QH E+ M AG+ Q LAEG + P
Sbjct: 118 SVAAQHGEAAMRAGVGCRQGLAEGPYRRP 32
Score = 135 bits (290), Expect = 4e-031
Identities = 66/152 (43%), Positives = 90/152 (59%)
Frame = +1 / +1
Query: 40 KATRALLLQDIDSL*YQHSWWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALS 219
+A +LLQD D + +QH+W +L AA P V + G+DP NTRAC +G AW G+AL
Sbjct: 31 EAGGTVLLQDPDGIRHQHAWRLLRAAPPR*RVPPSPGHDPVAPNTRACGKGSAWHGLALP 210
Query: 220 PHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSN 399
P++ +T +AS +E LEC C Q + W CLH +R W ASC A +E A + + FS+
Sbjct: 211 PYLPWAT*EASPSERLECVCQFQKACSWGCLHFPQRREWRASCWC*AGYETAVQRAFFSH 390
Query: 400 IKPQHASWCSCYSMACC*HWDHVYCLLQA*DK 495
HASW C MA H HV+ LLQ *++
Sbjct: 391 F*S*HASWGPCNCMARYQHEKHVHGLLQT*NE 486
Score = 104 bits (221), Expect = 1e-021
Identities = 68/150 (45%), Positives = 72/150 (48%)
Frame = +3 / +3
Query: 39 QGHACTPSARH*QPLIPALMVDSRCCGAMQMSVFRHWI*PVNLQHKSL*PRTCMVWNGAF 218
+G PSAR *+ PA M S CC A S W *P QHKSL R CM W GA
Sbjct: 30 RGRRYGPSARP*RHPTPARMAASPCCAATLTSASLPWT*PSRPQHKSLWQRICMAWTGAS 209
Query: 219 ATYSEVNHEGIFCRVAGVFLLVPSVLVLEMPSSF*EVIVGSFV*ESGVP*GSKQMFHLQ* 398
A S N GI R GV L VP L L MPS E V SFV G * S LQ
Sbjct: 210 AISSVGNLGGISFRAVGVCLSVPKGL*LGMPSFSSEERVASFVLVLGGL*DSCPTCLLQS 389
Query: 399 YQATACILVFLLQHGMLLTLGPCLLSTTSL 488
+ ACIL L HG L T C STT+L
Sbjct: 390 FLVIACILGSLQLHGTLSTRKACSRSTTNL 479
Score = 60.2 bits (125), Expect(3) = e-109
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +1 / +2
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SP+EF++P D+YMES+K NY IGMRF+MRF+
Sbjct: 485 SPSEFIIPYDQYMESVKNNYSIGMRFRMRFE 577
Score = 38.6 bits (78), Expect(3) = e-109
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3 / +2
Query: 588 GEEAPEQRFTGTIVG 632
GEEAPEQRFTGTIVG
Sbjct: 578 GEEAPEQRFTGTIVG 622
Score = 30.9 bits (61), Expect(3) = 8e-061
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 631 PTMVPVNLCSGA 596
PT+VPVNLCSGA
Sbjct: 621 PTIVPVNLCSGA 586
Score = 26.3 bits (51), Expect(3) = 8e-061
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / -1
Query: 585 KPHFKSHPYRVISFQ*FHIAITGNNKL 505
KPH +SHP ++ HI I N+L
Sbjct: 574 KPHPESHPN*IVVLHRLHILIIWYNEL 494
>gb|AV933277.1|AV933277 AV933277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6b18 5', mRNA sequence
Length = 667
Score = 336 bits (728), Expect(2) = 9e-095
Identities = 136/149 (91%), Positives = 144/149 (96%)
Frame = +2 / +2
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMT+ PPTQELVAKDLHG++WRFRHIF
Sbjct: 176 VRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHGMDWRFRHIF 355
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLLQSGWSVFVS+KRL AGDAFIFLRG+SGELRVGVRRAMRQ +NVPSSVISSH
Sbjct: 356 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRAMRQLSNVPSSVISSH 535
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMHLGVLATAWHA+NT +MFTVYYKPRTS
Sbjct: 536 SMHLGVLATAWHAINTKSMFTVYYKPRTS 622
Score = 216 bits (466), Expect = 2e-055
Identities = 100/149 (67%), Positives = 109/149 (73%)
Frame = -2 / -2
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL**TVNM+ VL ACHAVARTPRCML L++TE+GT CL+ARLTPTRSSPLSPLRK
Sbjct: 621 LVLGL**TVNMLFVLIACHAVARTPRCML*LEMTEEGTLDSCLIARLTPTRSSPLSPLRK 442
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLATXXXXXXXXXXXXXXX 136
MKASPA L LT TLQPL +RCL G P +WRKR S PCRS AT
Sbjct: 441 MKASPATSLLELTNTLQPL*RRCLLGCPRKIWRKRQSMPCRSFATSSCVGGDWVMSRGGR 262
Query: 135 XXSAWRRSTENPP*VLVSEAVNVLQKECT 49
SAWRRSTE PP VLVS+AV VLQK+ T
Sbjct: 261 HSSAWRRSTEKPPCVLVSDAVRVLQKDRT 175
Score = 154 bits (331), Expect = 8e-037
Identities = 69/149 (46%), Positives = 98/149 (65%)
Frame = -1 / -1
Query: 487 RLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KDEG 308
R VVD +H V+S+PC K+ KMHA+ *R ++ L H P++ TKL T++S ++EG
Sbjct: 613 RFVVDREHAFRVDSVPCSCKDPKMHAMTRND*RRHVGQLSHSPPNTNTKLATLSSEENEG 434
Query: 307 ISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKTLI 128
I S K GT+K+TP L++MP L +E +A+AP H MQ+L +KLLCW GH+Q R+ L+
Sbjct: 433 IPSYKPFGTDKHTPTALKEMPPRLPTEDMAEAPVHAMQILCHKLLCWGRLGHVQGREALV 254
Query: 127 CMAPQHRESTMSAGIRGCQCLAEGVHAWP 41
+A QH E+ M AG+ Q LAEG + P
Sbjct: 253 SVAAQHGEAAMRAGVGCRQGLAEGPYRRP 167
Score = 135 bits (290), Expect = 4e-031
Identities = 66/152 (43%), Positives = 90/152 (59%)
Frame = +1 / +1
Query: 40 KATRALLLQDIDSL*YQHSWWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALS 219
+A +LLQD D + +QH+W +L AA P V + G+DP NTRAC +G AW G+AL
Sbjct: 166 EAGGTVLLQDPDGIRHQHAWRLLRAAPPR*RVPPSPGHDPVAPNTRACGKGSAWHGLALP 345
Query: 220 PHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSN 399
P++ +T +AS +E LEC C Q + W CLH +R W ASC A +E A + + FS+
Sbjct: 346 PYLPWAT*EASPSERLECVCQFQKACSWGCLHFPQRREWRASCWC*AGYETAVQRAFFSH 525
Query: 400 IKPQHASWCSCYSMACC*HWDHVYCLLQA*DK 495
HASW C MA H HV+ LLQ *++
Sbjct: 526 F*S*HASWGPCNCMARYQHEKHVHGLLQT*NE 621
Score = 104 bits (221), Expect = 1e-021
Identities = 68/150 (45%), Positives = 72/150 (48%)
Frame = +3 / +3
Query: 39 QGHACTPSARH*QPLIPALMVDSRCCGAMQMSVFRHWI*PVNLQHKSL*PRTCMVWNGAF 218
+G PSAR *+ PA M S CC A S W *P QHKSL R CM W GA
Sbjct: 165 RGRRYGPSARP*RHPTPARMAASPCCAATLTSASLPWT*PSRPQHKSLWQRICMAWTGAS 344
Query: 219 ATYSEVNHEGIFCRVAGVFLLVPSVLVLEMPSSF*EVIVGSFV*ESGVP*GSKQMFHLQ* 398
A S N GI R GV L VP L L MPS E V SFV G * S LQ
Sbjct: 345 AISSVGNLGGISFRAVGVCLSVPKGL*LGMPSFSSEERVASFVLVLGGL*DSCPTCLLQS 524
Query: 399 YQATACILVFLLQHGMLLTLGPCLLSTTSL 488
+ ACIL L HG L T C STT+L
Sbjct: 525 FLVIACILGSLQLHGTLSTRKACSRSTTNL 614
Score = 31.8 bits (63), Expect(2) = 9e-095
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1 / +2
Query: 496 SPAEFVVPCDRYMESL 543
SP+EF++P D+YMES+
Sbjct: 620 SPSEFIIPYDQYMESV 667
>gb|CA008952.1|CA008952 HU12K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU12K18
5-PRIME, mRNA sequence
Length = 609
Score = 335 bits (726), Expect(2) = 3e-093
Identities = 136/149 (91%), Positives = 143/149 (95%)
Frame = +2 / +2
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMT+ PPTQELVAKDLHG+EWRFRHIF
Sbjct: 110 VRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHGMEWRFRHIF 289
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLLQSGWSVFVS+KRL AGDAFIFLRG+SGELRVGVRRAMRQ +N+ SSVISSH
Sbjct: 290 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRAMRQLSNIASSVISSH 469
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMHLGVLATAWHA+NT TMFTVYYKPRTS
Sbjct: 470 SMHLGVLATAWHAINTKTMFTVYYKPRTS 556
Score = 224 bits (484), Expect = 6e-058
Identities = 104/152 (68%), Positives = 112/152 (73%)
Frame = -2 / -1
Query: 504 SWRLVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSP 325
S RLVLGL**TVNMV VL ACHAVARTPRC+L LD+TE+ CL+ARLTPTRSSPLSP
Sbjct: 564 SERLVLGL**TVNMVFVLIACHAVARTPRCIL*LDMTEEAMLESCLIARLTPTRSSPLSP 385
Query: 324 LRKMKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLATXXXXXXXXXXXX 145
LRKMKASPA L LTKTLQPL +RCL G P MWRKRHS PCRS AT
Sbjct: 384 LRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMWRKRHSMPCRSFATSSCVGGDCVISR 205
Query: 144 XXXXXSAWRRSTENPP*VLVSEAVNVLQKECT 49
SAWRRSTE PP VLVS+AV+VLQK+ T
Sbjct: 204 GGRHSSAWRRSTEKPPCVLVSDAVSVLQKDLT 109
Score = 162 bits (348), Expect = 4e-039
Identities = 73/151 (48%), Positives = 99/151 (65%)
Frame = -1 / -3
Query: 493 CPRLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KD 314
CP VVDS+HG V+SMPC K++K+H + Y *R + L H P + TKL ++S ++
Sbjct: 553 CPGFVVDSEHGFCVDSMPCSCKDSKVHTMTRYD*RSYVGKLSHSPPHTNTKLTALSSEEN 374
Query: 313 EGISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKT 134
EG+ S K GT+K+TPA L++MP L +E VA+AP H MQ+L ++LLC R HIQ R+
Sbjct: 373 EGVPSDKPFGTDKDTPAALKEMPPRLPAENVAEAPLHAMQILCHELLCGRRLRHIQGREA 194
Query: 133 LICMAPQHRESTMSAGIRGCQCLAEGVHAWP 41
LI +A QH E+ M AG+ Q LAEG H P
Sbjct: 193 LISVAAQHGEAAMCAGVGRGQRLAEGPHRRP 101
Score = 142 bits (305), Expect = 3e-033
Identities = 70/153 (45%), Positives = 93/153 (60%)
Frame = +1 / +1
Query: 37 CKATRALLLQDIDSL*YQHSWWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMAL 216
C+A +LLQD D + +QH+W +L AA P *V + GYD +S+TRA +G AW G+AL
Sbjct: 97 CQAGGEVLLQDADRVRHQHTWRLLRAAPPR**VPPSPGYDAVSSHTRARGKGSAWHGVAL 276
Query: 217 SPHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFS 396
PH R+T +AS +E LEC C Q + W LH +R ASC +A +E A + S FS
Sbjct: 277 PPHFPRAT*EASPSERLECLCQFQKACRWGRLHFPQRRER*ASCWCEAGYETAFQHSFFS 456
Query: 397 NIKPQHASWCSCYSMACC*HWDHVYCLLQA*DK 495
+I +A W C MAC H +HV+CLLQ DK
Sbjct: 457 HI*S*YAPWSPCNCMACYQHKNHVHCLLQTQDK 555
Score = 81.7 bits (172), Expect(2) = 5e-021
Identities = 48/97 (49%), Positives = 50/97 (51%)
Frame = +3 / +3
Query: 57 PSARH*QPLIPALMVDSRCCGAMQMSVFRHWI*PVNLQHKSL*PRTCMVWNGAFATYSEV 236
PSAR * PA M S CC A MS WI* L HKS R CM W+GA AT+S
Sbjct: 117 PSARR*PRPTPAHMAASPCCAATLMSASLPWI*RSLLPHKSSWQRICMAWSGASATFSAG 296
Query: 237 NHEGIFCRVAGVFLLVPSVLVLEMPSSF*EVIVGSFV 347
N GI R AGV L VP L L PS E SFV
Sbjct: 297 NLGGISFRAAGVSLSVPKGLSLGTPSFSSEERAVSFV 407
Score = 39.6 bits (80), Expect(2) = 5e-021
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = +3 / +3
Query: 390 LQ*YQATACILVFLLQHGMLLTLGPCLLSTTSLGQ 494
LQ Y C L L HGML T PC LSTT+ GQ
Sbjct: 450 LQSYLVIVCTLESLQLHGMLSTQKPCSLSTTNPGQ 554
Score = 27.6 bits (54), Expect(2) = 3e-093
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 496 SPAEFVVPCDRYMESLK 546
S +EF++P D+Y ES+K
Sbjct: 554 SRSEFIIPYDKYTESVK 604
>gb|BQ470466.1|BQ470466 HX03B03r HX Hordeum vulgare subsp. vulgare cDNA clone HX03B03
5-PRIME, mRNA sequence
Length = 632
Score = 309 bits (669), Expect = 2e-083
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +2 / +1
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMT+ PPTQELVAKDLHG++WRFRHIF
Sbjct: 217 VRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHGMDWRFRHIF 396
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLLQSGWSVFVS+KRL AGDAFIFLRG+SGELRVGVRRAMRQ +NVPSSVISSH
Sbjct: 397 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRAMRQLSNVPSSVISSH 576
Query: 410 SMHLGVLATAWHAVNT 457
SMHLGVLATAWHA+NT
Sbjct: 577 SMHLGVLATAWHAINT 624
Score = 198 bits (427), Expect = 5e-050
Identities = 90/139 (64%), Positives = 99/139 (71%)
Frame = -2 / -1
Query: 465 MVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRKMKASPAPRRL 286
M+ VL ACHAVARTPRCML L++TE+GT CL+ARLTPTRSSPLSPLRKMKASPA L
Sbjct: 632 MLFVLIACHAVARTPRCML*LEMTEEGTLDSCLIARLTPTRSSPLSPLRKMKASPATSLL 453
Query: 285 ALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLATXXXXXXXXXXXXXXXXXSAWRRSTE 106
LT TLQPL +RCL G P +WRKR S PCRS AT SAWRRSTE
Sbjct: 452 ELTNTLQPL*RRCLLGCPRKIWRKRQSMPCRSFATSSCVGGDWVMSRGGRHSSAWRRSTE 273
Query: 105 NPP*VLVSEAVNVLQKECT 49
PP VLVS+AV VLQK+ T
Sbjct: 272 KPPCVLVSDAVRVLQKDRT 216
Score = 144 bits (309), Expect = 9e-034
Identities = 64/138 (46%), Positives = 92/138 (66%)
Frame = -1 / -3
Query: 454 VNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KDEGISSTKTLGTNK 275
V+S+PC K+ KMHA+ *R ++ L H P++ TKL T++S ++EGI S K GT+K
Sbjct: 621 VDSVPCSCKDPKMHAMTRND*RRHVGQLSHSPPNTNTKLATLSSEENEGIPSYKPFGTDK 442
Query: 274 NTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKTLICMAPQHRESTM 95
+TP L++MP L +E +A+AP H MQ+L +KLLCW GH+Q R+ L+ +A QH E+ M
Sbjct: 441 HTPTALKEMPPRLPTEDMAEAPVHAMQILCHKLLCWGRLGHVQGREALVSVAAQHGEAAM 262
Query: 94 SAGIRGCQCLAEGVHAWP 41
AG+ Q LAEG + P
Sbjct: 261 RAGVGCRQGLAEGPYRRP 208
Score = 127 bits (271), Expect = 1e-028
Identities = 61/142 (42%), Positives = 82/142 (57%)
Frame = +1 / +3
Query: 40 KATRALLLQDIDSL*YQHSWWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALS 219
+A +LLQD D + +QH+W +L AA P V + G+DP NTRAC +G AW G+AL
Sbjct: 207 EAGGTVLLQDPDGIRHQHAWRLLRAAPPR*RVPPSPGHDPVAPNTRACGKGSAWHGLALP 386
Query: 220 PHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSN 399
P++ +T +AS +E LEC C Q + W CLH +R W ASC A +E A + + FS+
Sbjct: 387 PYLPWAT*EASPSERLECVCQFQKACSWGCLHFPQRREWRASCWC*AGYETAVQRAFFSH 566
Query: 400 IKPQHASWCSCYSMACC*HWDH 465
HASW C MA H H
Sbjct: 567 F*S*HASWGPCNCMARYQHEKH 632
>gb|AV934271.1|AV934271 AV934271 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11l09 5', mRNA sequence
Length = 582
Score = 168 bits (362), Expect(6) = 3e-082
Identities = 70/79 (88%), Positives = 75/79 (94%)
Frame = +2 / +3
Query: 260 SGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATA 439
SGWSVFVS+KRL AGDAFIFLRG+SGELRVGVRRAMRQ +N+ SSVISSHSMHLGVLATA
Sbjct: 51 SGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRAMRQLSNIASSVISSHSMHLGVLATA 230
Query: 440 WHAVNTGTMFTVYYKPRTS 496
WHA+NT TMFTVYYKPRTS
Sbjct: 231 WHAINTKTMFTVYYKPRTS 287
Score = 143 bits (306), Expect(3) = 8e-044
Identities = 66/84 (78%), Positives = 70/84 (83%)
Frame = -2 / -3
Query: 504 SWRLVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSP 325
S RLVLGL**TVNMV VL ACHAVARTPRC+L LD+TE+ CL+ARLTPTRSSPLSP
Sbjct: 295 SERLVLGL**TVNMVFVLIACHAVARTPRCIL*LDMTEEAMLESCLIARLTPTRSSPLSP 116
Query: 324 LRKMKASPAPRRLALTKTLQPLCK 253
LRKMKASPA L LTKTLQPL K
Sbjct: 115 LRKMKASPATSLLELTKTLQPLLK 44
Score = 84.9 bits (179), Expect(3) = 3e-023
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = -1 / -2
Query: 493 CPRLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KD 314
CP VVDS+HG V+SMPC K++K+H + Y *R + L H P + TKL ++S ++
Sbjct: 284 CPGFVVDSEHGFCVDSMPCSCKDSKVHTMTRYD*RSYVGKLSHSPPHTNTKLTALSSEEN 105
Query: 313 EGISSTKTLGTNKNTPATLQ 254
EG+ S K GT+K+TPA +
Sbjct: 104 EGVPSDKPFGTDKDTPAAXE 45
Score = 82.2 bits (173), Expect(6) = 3e-082
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3 / +3
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
W ES WR LKVRWDE+S+IPRP+RVSPW+IEPA SPP
Sbjct: 444 WPESSWRSLKVRWDESSTIPRPDRVSPWEIEPASSPP 554
Score = 48.3 bits (99), Expect(6) = 3e-082
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / +3
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
S +EF++P D+Y ES+K Y IG RFKMRF+
Sbjct: 285 SRSEFIIPYDKYTESVKNIYSIGTRFKMRFE 377
Score = 41.8 bits (85), Expect(6) = 3e-082
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 588 GEEAPEQRFTGTIVGNVDPDQ 650
GEEAPEQRFTGTIVG+ + DQ
Sbjct: 378 GEEAPEQRFTGTIVGSDNLDQ 440
Score = 40.0 bits (81), Expect(3) = 8e-044
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -3
Query: 739 QGETLSGRGMEEASSHLTLR*RHLDSAH 656
QGETLSGRG+ + SS TLR LDS H
Sbjct: 526 QGETLSGRGIVDDSSQRTLRDLQLDSGH 443
Score = 33.6 bits (67), Expect(6) = 3e-082
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2 / +2
Query: 218 RHIFRGQPRRHLLQ 259
R IFRGQPRRHLLQ
Sbjct: 8 RGIFRGQPRRHLLQ 49
Score = 33.1 bits (66), Expect(3) = 8e-044
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -1 / -3
Query: 637 TFPTMVPVNLCSGA 596
+ PTMVPVNLCSGA
Sbjct: 427 SLPTMVPVNLCSGA 386
Score = 31.3 bits (62), Expect(3) = 3e-023
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3 / -2
Query: 746 YLPGRNPFRTWNGGSFIPPHLEVTPFRFSP 657
Y P R+ WN IP HLE +P F P
Sbjct: 533 YFPRRDSIGPWNS*RLIPTHLEGSPA*FWP 444
Score = 30.4 bits (60), Expect(3) = 3e-023
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2 / -1
Query: 651 LDQDPHFQQWSQ*TFVLEPLHLK 583
+ QD H Q W Q*TF L PL L+
Sbjct: 441 IGQDYHCQLWYQ*TFALVPLPLQ 373
Score = 25.4 bits (49), Expect(6) = 3e-082
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 759 SPPPINPLPVHR 794
S PP+NPLP+ R
Sbjct: 543 SSPPVNPLPLSR 578
>gb|BU987774.1|BU987774 HF15L16r HF Hordeum vulgare subsp. vulgare cDNA clone HF15L16
5-PRIME, mRNA sequence
Length = 591
Score = 89.0 bits (188), Expect(6) = 2e-071
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +2 / +1
Query: 380 NVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
+VPSSVISSHSMHLGVLATAWHA+NT +MFTVYYKPRTS
Sbjct: 55 HVPSSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTS 171
Score = 80.8 bits (170), Expect(6) = 2e-071
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +3 / +1
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
W ES WR LKVRWDE S+IPRP+RVSPW+IEPA SPP
Sbjct: 328 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSPP 438
Score = 70.7 bits (148), Expect(6) = 1e-032
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = -2 / -2
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTF 379
LVLGL**TVNM+ VL ACHAVARTPRCML L++TE+GT+
Sbjct: 170 LVLGL**TVNMLFVLIACHAVARTPRCML*LEMTEEGTW 54
Score = 60.2 bits (125), Expect(6) = 2e-071
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SP+EF++P D+YMES+K NY IGMRF+MRF+
Sbjct: 169 SPSEFIIPYDQYMESVKNNYSIGMRFRMRFE 261
Score = 57.0 bits (118), Expect(6) = 2e-071
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQ 890
S PP+NPLP+ R KRPR N PESS TKE A K+ +++ Q
Sbjct: 427 SSPPVNPLPLSRVKRPRPNVPPVSPESSVLTKEGATKIDMDSAQ 558
Score = 42.3 bits (86), Expect(6) = 2e-071
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 588 GEEAPEQRFTGTIVGNVDPDQ 650
GEEAPEQRFTGTIVG+ + DQ
Sbjct: 262 GEEAPEQRFTGTIVGSENLDQ 324
Score = 39.1 bits (79), Expect(6) = 1e-032
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1 / -2
Query: 739 QGETLSGRGMEEASSHLTLR*RHLDSAH 656
QGETLSGRG+ + SS TLR DS H
Sbjct: 410 QGETLSGRGIVDGSSQRTLRDLQFDSGH 327
Score = 36.3 bits (73), Expect(6) = 1e-032
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2 / -1
Query: 372 CLMARLTPTRSSPLSP 325
CL+ARLTPTRSSPL P
Sbjct: 48 CLIARLTPTRSSPLVP 1
Score = 33.6 bits (67), Expect(6) = 2e-071
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 326 GDSGELRVGVRRAMRQ 373
G GELRVGVRRAMRQ
Sbjct: 2 GTRGELRVGVRRAMRQ 49
Score = 31.3 bits (62), Expect(6) = 1e-032
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1 / -2
Query: 637 TFPTMVPVNLCSGA 596
+ PT+VPVNLCSGA
Sbjct: 311 SLPTIVPVNLCSGA 270
Score = 26.3 bits (51), Expect(6) = 1e-032
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / -1
Query: 585 KPHFKSHPYRVISFQ*FHIAITGNNKL 505
KPH +SHP ++ HI I N+L
Sbjct: 258 KPHPESHPN*IVVLHRLHILIIWYNEL 178
Score = 25.8 bits (50), Expect(6) = 1e-032
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3 / -1
Query: 872 DLWSSFFCWS*RLGQRSYSIRARSLGSVHWKRVDRGR 762
+L +FFC + R + +IR+RS KRV+R R
Sbjct: 540 NLSCTFFCKNRRFRRNWRNIRSRSFDPRKRKRVNRRR 430
>gb|CA032804.1|CA032804 HX14E02r HX Hordeum vulgare subsp. vulgare cDNA clone HX14E02
5-PRIME, mRNA sequence
Length = 655
Score = 89.0 bits (188), Expect(6) = 9e-071
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +2 / +3
Query: 380 NVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
+VPSSVISSHSMHLGVLATAWHA+NT +MFTVYYKPRTS
Sbjct: 54 HVPSSVISSHSMHLGVLATAWHAINTKSMFTVYYKPRTS 170
Score = 80.8 bits (170), Expect(6) = 9e-071
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +3 / +3
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
W ES WR LKVRWDE S+IPRP+RVSPW+IEPA SPP
Sbjct: 327 WPESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSPP 437
Score = 70.7 bits (148), Expect(6) = 5e-032
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = -2 / -1
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTF 379
LVLGL**TVNM+ VL ACHAVARTPRCML L++TE+GT+
Sbjct: 169 LVLGL**TVNMLFVLIACHAVARTPRCML*LEMTEEGTW 53
Score = 60.2 bits (125), Expect(6) = 9e-071
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +1 / +3
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SP+EF++P D+YMES+K NY IGMRF+MRF+
Sbjct: 168 SPSEFIIPYDQYMESVKNNYSIGMRFRMRFE 260
Score = 57.0 bits (118), Expect(6) = 9e-071
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +3 / +3
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQ 890
S PP+NPLP+ R KRPR N PESS TKE A K+ +++ Q
Sbjct: 426 SSPPVNPLPLSRVKRPRPNVPPVSPESSVLTKEGATKIDMDSAQ 557
Score = 42.3 bits (86), Expect(6) = 9e-071
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 588 GEEAPEQRFTGTIVGNVDPDQ 650
GEEAPEQRFTGTIVG+ + DQ
Sbjct: 261 GEEAPEQRFTGTIVGSENLDQ 323
Score = 39.1 bits (79), Expect(6) = 5e-032
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1 / -1
Query: 739 QGETLSGRGMEEASSHLTLR*RHLDSAH 656
QGETLSGRG+ + SS TLR DS H
Sbjct: 409 QGETLSGRGIVDGSSQRTLRDLQFDSGH 326
Score = 34.1 bits (68), Expect(6) = 5e-032
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / -3
Query: 372 CLMARLTPTRSSPL 331
CL+ARLTPTRSSPL
Sbjct: 47 CLIARLTPTRSSPL 6
Score = 31.8 bits (63), Expect(6) = 9e-071
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +1
Query: 335 GELRVGVRRAMRQ 373
GELRVGVRRAMRQ
Sbjct: 10 GELRVGVRRAMRQ 48
Score = 31.3 bits (62), Expect(6) = 5e-032
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1 / -1
Query: 637 TFPTMVPVNLCSGA 596
+ PT+VPVNLCSGA
Sbjct: 310 SLPTIVPVNLCSGA 269
Score = 26.3 bits (51), Expect(6) = 5e-032
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / -3
Query: 585 KPHFKSHPYRVISFQ*FHIAITGNNKL 505
KPH +SHP ++ HI I N+L
Sbjct: 257 KPHPESHPN*IVVLHRLHILIIWYNEL 177
Score = 25.8 bits (50), Expect(6) = 5e-032
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3 / -3
Query: 872 DLWSSFFCWS*RLGQRSYSIRARSLGSVHWKRVDRGR 762
+L +FFC + R + +IR+RS KRV+R R
Sbjct: 539 NLSCTFFCKNRRFRRNWRNIRSRSFDPRKRKRVNRRR 429
>gb|BJ472357.1|BJ472357 BJ472357 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33n21 5', mRNA sequence
Length = 684
Score = 82.2 bits (173), Expect(5) = 6e-057
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3 / +1
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
W ES WR LKVRWDE+S+IPRP+RVSPW+IEPA SPP
Sbjct: 271 WPESSWRSLKVRWDESSTIPRPDRVSPWEIEPASSPP 381
Score = 70.7 bits (148), Expect(5) = 6e-057
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +2 / +1
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMHLGVLATAWHA+NT TMFTVYYKPRTS
Sbjct: 28 SMHLGVLATAWHAINTKTMFTVYYKPRTS 114
Score = 53.3 bits (110), Expect(5) = 6e-057
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +3 / +1
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQ 890
S PP+NPLP+ R KR R N + PESS TKE A K ++ Q
Sbjct: 370 SSPPVNPLPLSRAKRSRPNVPPASPESSVRTKEGATKADMDCAQ 501
Score = 48.3 bits (99), Expect(5) = 6e-057
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
S +EF++P D+Y ES+K Y IG RFKMRF+
Sbjct: 112 SRSEFIIPYDKYTESVKNIYSIGTRFKMRFE 204
Score = 41.8 bits (85), Expect(5) = 6e-057
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 588 GEEAPEQRFTGTIVGNVDPDQ 650
GEEAPEQRFTGTIVG+ + DQ
Sbjct: 205 GEEAPEQRFTGTIVGSDNLDQ 267
>gb|AW983082.3|AW983082 HVSMEg0008A15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0008A15f, mRNA sequence
Length = 806
Score = 77.6 bits (163), Expect(6) = 2e-054
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +2 / +1
Query: 389 SSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SSVI SHSMHLGVLATAWHA+NT +M TVYYKPRTS
Sbjct: 1 SSVICSHSMHLGVLATAWHAMNTKSMLTVYYKPRTS 108
Score = 58.8 bits (122), Expect(6) = 2e-054
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SP+E ++P D+YMES+K NY IGMRFKMRF+
Sbjct: 106 SPSELIIPYDQYMESVKNNYSIGMRFKMRFE 198
Score = 54.2 bits (112), Expect(6) = 2e-054
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3 / +2
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQHALQRP 908
S P +NPLP+ R KRPR N PES+ TKE+A K+ +++ Q + P
Sbjct: 365 SSPAVNPLPLSRVKRPRPNVPTVSPESTVLTKESATKIDMDSAQAQQRNP 514
Score = 38.6 bits (78), Expect(6) = 2e-054
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 708 SIPRPERVSPWQIEPAVSP 764
+IPR +RVSPW+IEPA SP
Sbjct: 317 TIPRXDRVSPWKIEPASSP 373
Score = 38.2 bits (77), Expect(6) = 2e-054
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +3 / +1
Query: 588 GEEAPEQRFTGTIVGNVDPDQ 650
GEEAP QRFTGTIVG+ + DQ
Sbjct: 199 GEEAP*QRFTGTIVGSENLDQ 261
Score = 37.7 bits (76), Expect(6) = 2e-054
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 657 WAESKWRYLKVRWDEAS 707
WAES WR L VRWDE S
Sbjct: 265 WAESNWRSLNVRWDEPS 315
>emb|AJ234409.1|HVU234409 Hordeum vulgare partial mRNA; clone cMWG0660
Length = 485
Score = 187 bits (403), Expect = 9e-047
Identities = 73/106 (68%), Positives = 88/106 (83%)
Frame = +2 / +2
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A+ PPLD T+QPP QEL+A+D+H VEW+FRHIFRGQ
Sbjct: 158 FCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDVEWKFRHIFRGQ 337
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQ 376
P+RHLL +GWSVFVSAKRL AGD+ +F+ + +L +G+RRA R Q
Sbjct: 338 PKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLWLGIRRANRTQ 475
>gb|CA009554.1|CA009554 HU14H09r HU Hordeum vulgare subsp. vulgare cDNA clone HU14H09
5-PRIME, mRNA sequence
Length = 628
Score = 116 bits (249), Expect(3) = 6e-045
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = +2 / +1
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
R + +RHLL +GWS+F+S KRL AGD+ +F+R +L +G+RRA RQ N+ SSV+SS
Sbjct: 1 RHEAKRHLLTTGWSLFISGKRLIAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSD 180
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMH+GVLA A HA + FT++Y PR S
Sbjct: 181 SMHIGVLAAAAHAAANNSQFTIFYNPRAS 267
Score = 78.5 bits (165), Expect(3) = 6e-045
Identities = 33/73 (45%), Positives = 43/73 (58%)
Frame = +3 / +1
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPP 770
EE+ +R+ GTI G D D W S+WR ++V WDEA+ R RVS W IEP ++P
Sbjct: 364 EESGTRRYMGTITGISDLDPVRWKNSQWRNIQVAWDEAAPSERRTRVSLWDIEPVIAPFF 543
Query: 771 INPLPVHRPKRPR 809
I P P+ KR R
Sbjct: 544 IYPTPLFTAKRAR 582
Score = 24.4 bits (47), Expect(3) = 6e-045
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRN 552
SP+EFV+P +Y +++ N
Sbjct: 265 SPSEFVIPFAKYQKAVYGN 321
>gb|BQ472196.1|BQ472196 HV04L02r HV Hordeum vulgare subsp. vulgare cDNA clone HV04L02
5-PRIME, mRNA sequence
Length = 566
Score = 116 bits (249), Expect(3) = 2e-043
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = +2 / +1
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
R + +RHLL +GWS+F+S KRL AGD+ +F+R +L +G+RRA RQ N+ SSV+SS
Sbjct: 1 RHEAKRHLLTTGWSLFISGKRLIAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSD 180
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMH+GVLA A HA + FT++Y PR S
Sbjct: 181 SMHIGVLAAAAHAAANNSQFTIFYNPRAS 267
Score = 73.5 bits (154), Expect(3) = 2e-043
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3 / +1
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPP 770
EE+ +R+ GTI G D D W S+WR ++V WDEA+ R RVS W IEP ++P
Sbjct: 364 EESGTRRYMGTITGISDLDPVRWKNSQWRNIQVAWDEAAPSERRTRVSLWDIEPVIAPFF 543
Query: 771 INPLPV 788
I P P+
Sbjct: 544 IYPTPL 561
Score = 24.4 bits (47), Expect(3) = 2e-043
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 496 SPAEFVVPCDRYMESLKRN 552
SP+EFV+P +Y +++ N
Sbjct: 265 SPSEFVIPFAKYQKAVYGN 321
>gb|BI955563.1|BI955563 HVSMEm0023J10f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023J10f, mRNA sequence
Length = 690
Score = 78.0 bits (164), Expect(4) = 3e-043
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +3 / +1
Query: 654 GWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
G ES WR LKVRWDE S+IPRP+RVSPW+IEPA SPP
Sbjct: 169 GGGESNWRSLKVRWDEPSTIPRPDRVSPWKIEPASSPP 282
Score = 57.0 bits (118), Expect(4) = 3e-043
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +3 / +1
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQ 890
S PP+NPLP+ R KRPR N PESS TKE A K+ +++ Q
Sbjct: 271 SSPPVNPLPLSRVKRPRPNVPPVSPESSVLTKEGATKIDMDSAQ 402
Score = 54.7 bits (113), Expect(4) = 3e-043
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +1 / +3
Query: 505 EFVVPCDRYMESLKRNYPIGMRFKMRFK 588
EF++P D+YMES+K NY IGMRF+MRF+
Sbjct: 21 EFIIPYDQYMESVKNNYSIGMRFRMRFE 104
Score = 42.3 bits (86), Expect(4) = 3e-043
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 588 GEEAPEQRFTGTIVGNVDPDQAG 656
GEEAP QRFTGTIVG+ + DQ G
Sbjct: 105 GEEAPXQRFTGTIVGSENLDQGG 173
>gb|CA024140.1|CA024140 HZ48H14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H14
5-PRIME, mRNA sequence
Length = 402
Score = 142 bits (304), Expect = 4e-033
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +2 / +3
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHI 226
V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMT+ PPTQELVAKDLHG+EWRFRHI
Sbjct: 225 VRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHGMEWRFRHI 401
>gb|CA023546.1|CA023546 HZ46J12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46J12
5-PRIME, mRNA sequence
Length = 550
Score = 82.2 bits (173), Expect(3) = 3e-032
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3 / +3
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
W ES WR LKVRWDE+S+IPRP+RVSPW+IEPA SPP
Sbjct: 96 WPESSWRSLKVRWDESSTIPRPDRVSPWEIEPASSPP 206
Score = 53.3 bits (110), Expect(3) = 3e-032
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +3 / +3
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQ 890
S PP+NPLP+ R KR R N + PESS TKE A K ++ Q
Sbjct: 195 SSPPVNPLPLSRAKRSRPNVPPASPESSVRTKEGATKADMDCAQ 326
Score = 41.8 bits (85), Expect(3) = 3e-032
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 588 GEEAPEQRFTGTIVGNVDPDQ 650
GEEAPEQRFTGTIVG+ + DQ
Sbjct: 30 GEEAPEQRFTGTIVGSDNLDQ 92
>gb|AL506641.1|AL506641 AL506641 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03M18T 5',
mRNA sequence
Length = 700
Score = 78.5 bits (165), Expect(2) = 3e-025
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +3 / +2
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
W ES WR KVRWDE S+IPRP+RVSPW+IEPA SPP
Sbjct: 26 WPESNWRSXKVRWDEPSTIPRPDRVSPWKIEPASSPP 136
Score = 57.0 bits (118), Expect(2) = 3e-025
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +3 / +2
Query: 759 SPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLETQQ 890
S PP+NPLP+ R KRPR N PESS TKE A K+ +++ Q
Sbjct: 125 SSPPVNPLPLSRVKRPRPNVPPVSPESSVLTKEGATKIDMDSAQ 256
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 613,162,533
Number of Sequences: 312970
Number of extensions: 11157100
Number of successful extensions: 109647
Number of sequences better than 1.0e-020: 22
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 13414836849
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)