TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2649891.2.1
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 131 3e-055
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 131 3e-055
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 118 9e-046
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 98 1e-038
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 91 3e-038
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 91 3e-037
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 91 2e-035
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 87 2e-034
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 84 4e-034
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 91 4e-034
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 84 4e-034
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 131 6e-034
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 90 1e-032
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 131 1e-032
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 129 6e-032
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 87 4e-031
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 84 1e-030
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 91 3e-030
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 106 3e-030
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 91 4e-030
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 96 4e-030
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 80 2e-029
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 81 4e-028
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 79 4e-028
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 84 6e-028
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 81 4e-027
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 84 1e-026
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 95 6e-026
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 91 1e-024
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 93 1e-024
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 87 2e-024
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 87 2e-024
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 91 3e-024
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 91 2e-023
gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 ... 103 5e-023
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 106 1e-022
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 87 2e-022
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 87 4e-021
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 131 bits (281), Expect(2) = 3e-055
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MAKPGQADQLR+AGRL+IQY RVPC+W GM +AFKVDAGSN YLAVL+EYE GDG+L
Sbjct: 99 GGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAVLIEYEDGDGDL 278
Query: 440 RSVELMQ 420
SVELM+
Sbjct: 279 SSVELME 299
Score = 103 bits (220), Expect(2) = 3e-055
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M +SWG VWR NSG L PFSVRLTS SG+T+VAS+VIPAGW PG TYRSVVN+
Sbjct: 330 MDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 494
Score = 99.6 bits (211), Expect(2) = 2e-041
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 420 LHELHGPELAVAGLVLDQHRQVVRVRAGVHLERDVHPVPAARHPGVLDPEASGAAELVGL 599
LHELH ++AVA LVLD+H +VV V AGVHLE VHP P AR P VLD E SG A+LVGL
Sbjct: 299 LHELHRRQVAVAVLVLDEHGEVVGVGAGVHLEGYVHPPPVARDPCVLDLETSGRAKLVGL 120
Query: 600 AGLRHGS 620
AGLRH +
Sbjct: 119 AGLRHAA 99
Score = 90.0 bits (190), Expect(2) = 2e-041
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1 / -3
Query: 223 LTTERYVAPGVHPAGMTSLATTVLPEPDVRRTEKGPCRVAPELXLHTXPHD 375
LTTER V PG PAGMT LAT VLPE +VRRTEKG C + PEL LHT PHD
Sbjct: 490 LTTER*VPPGFQPAGMTLLATRVLPELEVRRTEKGACNIGPELYLHTAPHD 338
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 131 bits (281), Expect(2) = 3e-055
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MAKPGQADQLR+AGRL+IQY RVPC+W GM +AFKVDAGSN YLAVL+EYE GDG+L
Sbjct: 85 GGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAVLIEYEDGDGDL 264
Query: 440 RSVELMQ 420
SVELM+
Sbjct: 265 SSVELME 285
Score = 103 bits (220), Expect(2) = 3e-055
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M +SWG VWR NSG L PFSVRLTS SG+T+VAS+VIPAGW PG TYRSVVN+
Sbjct: 316 MDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 480
Score = 99.6 bits (211), Expect(2) = 2e-041
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 420 LHELHGPELAVAGLVLDQHRQVVRVRAGVHLERDVHPVPAARHPGVLDPEASGAAELVGL 599
LHELH ++AVA LVLD+H +VV V AGVHLE VHP P AR P VLD E SG A+LVGL
Sbjct: 285 LHELHRRQVAVAVLVLDEHGEVVGVGAGVHLEGYVHPPPVARDPCVLDLETSGRAKLVGL 106
Query: 600 AGLRHGS 620
AGLRH +
Sbjct: 105 AGLRHAA 85
Score = 90.0 bits (190), Expect(2) = 2e-041
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1 / -3
Query: 223 LTTERYVAPGVHPAGMTSLATTVLPEPDVRRTEKGPCRVAPELXLHTXPHD 375
LTTER V PG PAGMT LAT VLPE +VRRTEKG C + PEL LHT PHD
Sbjct: 476 LTTER*VPPGFQPAGMTLLATRVLPELEVRRTEKGACNIGPELYLHTAPHD 324
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 118 bits (253), Expect(3) = 9e-046
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MAKPGQADQL + GRL+IQY RVPC+W GM FKVDAG N YLAVL+EYE GDG+L
Sbjct: 58 GGMAKPGQADQLCAGGRLQIQYTRVPCNWRGMHRTFKVDAGFNPYYLAVLIEYEDGDGDL 237
Query: 440 RSVELMQ 420
SVELM+
Sbjct: 238 SSVELME 258
Score = 96.8 bits (205), Expect(3) = 2e-040
Identities = 43/67 (64%), Positives = 49/67 (73%)
Frame = +3 / -1
Query: 420 LHELHGPELAVAGLVLDQHRQVVRVRAGVHLERDVHPVPAARHPGVLDPEASGAAELVGL 599
LHELH ++AVA LVLD+H +VV V AGVH E VHP P AR P VLD E S A+LVGL
Sbjct: 258 LHELHRRQVAVAVLVLDEHGEVVGVEAGVHFEGTVHPPPVARDPCVLDLETSARAKLVGL 79
Query: 600 AGLRHGS 620
AGLRH +
Sbjct: 78 AGLRHAA 58
Score = 76.7 bits (161), Expect(3) = 9e-046
Identities = 31/45 (68%), Positives = 35/45 (77%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTP 249
M +SWG VWR NSG L PFSVRLTS SG+T+VAS+VIPAG P
Sbjct: 289 MDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAG*KP 423
Score = 76.2 bits (160), Expect(3) = 2e-040
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = +1 / -2
Query: 250 GVHPAGMTSLATTVLPEPDVRRTEKGPCRVAPELXLHTXPHD 375
G PAGMT LAT VLPE +VRRTEKG C + PEL LHT PHD
Sbjct: 422 GFQPAGMTLLATRVLPELEVRRTEKGACNIGPELYLHTAPHD 297
Score = 31.3 bits (62), Expect(3) = 2e-040
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2 / -2
Query: 98 HTHSSNHKPSQRHAFHSVQAGG 163
H HSS HKP RHA QA G
Sbjct: 554 HAHSSKHKPGWRHASVYGQARG 489
Score = 26.3 bits (51), Expect(3) = 9e-046
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3 / +3
Query: 175 ARPPAASLDGVEGVALAWFMIRAVRV 98
AR AA L GVA +WFM A+ V
Sbjct: 477 ARKHAARLPVYRGVAPSWFMFGAMGV 554
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 97.7 bits (207), Expect(2) = 1e-038
Identities = 38/67 (56%), Positives = 51/67 (76%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAKPG AD+LR+ G +R+QY RVPC + G++IAFKVD GSN Y L+E+E DG+L
Sbjct: 195 GAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFKVDQGSNPFYFKTLIEFEDDDGDL 374
Query: 440 RSVELMQ 420
++V L +
Sbjct: 375 KAVALKE 395
Score = 81.7 bits (172), Expect(2) = 1e-038
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M Q WG +WR N+G L+ PFS++LTS SGR +V ++VI A W GATYRS+VN+
Sbjct: 420 MTQDWGALWRLNNGNRLRAPFSLQLTSDSGRKLVINNVILANWNAGATYRSLVNY 584
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 91.3 bits (193), Expect(2) = 3e-038
Identities = 36/67 (53%), Positives = 50/67 (74%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAKPG +++LR +G + IQ+ RVPC + G+ + F V+ GSN Y AVLVEYE GDG++
Sbjct: 32 GAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYFAVLVEYEDGDGDV 211
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 212 VQVDLME 232
Score = 86.8 bits (183), Expect(2) = 3e-038
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +SG LQ PFS+R+T+ SG+T+VA VIPA W P YRS+V +S
Sbjct: 257 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQYS 424
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 91.3 bits (193), Expect(2) = 3e-037
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG+ D+LR AG + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++
Sbjct: 109 GKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDV 288
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 289 VQVDLME 309
Score = 83.5 bits (176), Expect(2) = 3e-037
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFSN*RW 204
M++SWG +WR +S LQ PFS+R+ + SG+T+VA +VIP W P YRS+V +S RW
Sbjct: 349 MRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQYS*IRW 528
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 91.3 bits (193), Expect(2) = 2e-035
Identities = 33/67 (49%), Positives = 52/67 (77%)
Frame = -2 / -2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAK G+ D+LR AG + +Q+ RVPC + G+ + F V+ GSN Y+A+LVEYE+GDG++
Sbjct: 598 GAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYENGDGDV 419
Query: 440 RSVELMQ 420
+ +++M+
Sbjct: 418 KQLDIME 398
Score = 77.1 bits (162), Expect(2) = 2e-035
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M++SWG +WR ++ + GPFS+R+T+ SG+T+VA VIP W P TY S+V F
Sbjct: 340 MKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIPGDWKPNKTYSSLVQF 176
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 86.8 bits (183), Expect(2) = 2e-034
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +S LQGPFS+R+TS SG+ +VA++VIPA W P YRS V FS
Sbjct: 238 MRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQFS 405
Score = 78.5 bits (165), Expect(2) = 2e-034
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GA+AK G ++LR +G + IQ+ RVPC++ G+ I F V GSNA YLAVL+EYE DG++
Sbjct: 13 GALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDMDGDV 192
Query: 440 RSVELMQ 420
V++ +
Sbjct: 193 IQVDMKE 213
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 83.5 bits (176), Expect(2) = 4e-034
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG D+LR +G + I++ RVPC + G+ I F V+ SN Y AVLVEYE GDG++
Sbjct: 187 GRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDV 366
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 367 VQVDLME 387
Score = 80.8 bits (170), Expect(2) = 4e-034
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG VWR +S LQ PFS+R+ + SG+T+VA+ VIPA W P YRS V +S
Sbjct: 421 MRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 588
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 91.3 bits (193), Expect(2) = 4e-034
Identities = 33/67 (49%), Positives = 52/67 (77%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAK G+ D+LR AG + +Q+ RVPC + G+ + F V+ GSN Y+A+LVEYE+GDG++
Sbjct: 30 GAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYENGDGDV 209
Query: 440 RSVELMQ 420
+ +++M+
Sbjct: 210 KQLDIME 230
Score = 73.0 bits (153), Expect(2) = 4e-034
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M++SWG +WR ++ + GPFS+R+T+ SG+T+VA VI W P TY S+V F
Sbjct: 288 MKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIXGDWKPNKTYSSLVQF 452
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 83.5 bits (176), Expect(2) = 4e-034
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG D+LR +G + I++ RVPC + G+ I F V+ SN Y AVLVEYE GDG++
Sbjct: 59 GRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDV 238
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 239 VQVDLME 259
Score = 80.8 bits (170), Expect(2) = 4e-034
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG VWR +S LQ PFS+R+ + SG+T+VA+ VIPA W P YRS V +S
Sbjct: 293 MRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 460
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 131 bits (281), Expect(2) = 6e-034
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MAKPGQADQLR+AGRL+IQY RVPC+W GM +AFKVDAGSN YLAVL+EYE GDG+L
Sbjct: 313 GGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAVLIEYEDGDGDL 492
Query: 440 RSVELMQ 420
SVELM+
Sbjct: 493 SSVELME 513
Score = 97.7 bits (207), Expect(2) = 3e-023
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 420 LHELHGPELAVAGLVLDQHRQVVRVRAGVHLERDVHPVPAARHPGVLDPEASGAAELVGL 599
LH+LH ++AVA LVLD+H +VV V AGVHLE VHP P AR P VLD E SG A+LVGL
Sbjct: 513 LHKLHRGQVAVAVLVLDEHGEVVGVGAGVHLEGYVHPPPVARDPCVLDLETSGRAKLVGL 334
Query: 600 AGLRHGS 620
AGLRH +
Sbjct: 333 AGLRHAA 313
Score = 32.2 bits (64), Expect(2) = 6e-034
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2 / +3
Query: 377 QSWGXVWRXNSGATLQGPF 321
+SWG VWR NS L PF
Sbjct: 552 RSWGAVWRVNSRPMLHAPF 608
Score = 30.4 bits (60), Expect(2) = 3e-023
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / -1
Query: 316 TEKGPCRVAPELXLHTXPHD 375
++KG C + EL LHT P D
Sbjct: 613 SQKGACNMGRELTLHTAPQD 554
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 90.4 bits (191), Expect(2) = 1e-032
Identities = 35/67 (52%), Positives = 50/67 (74%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAK G+ ++LR AG + +Q+ RVPC + G+ + F V GSN YLA+LVEYE+GDG++
Sbjct: 329 GAMAKDGRNEELRHAGIIDMQFRRVPCQYPGLTVTFHVQHGSNPYYLAILVEYENGDGDV 508
Query: 440 RSVELMQ 420
V++MQ
Sbjct: 509 DQVDMMQ 529
Score = 69.3 bits (145), Expect(2) = 1e-032
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVV 225
M +SWG +WR ++ +QGPFS+R+T+ SG+T+VA V P W P Y S +
Sbjct: 590 MTESWGSIWRMDTRRPMQGPFSLRITNESGKTLVADQVNPGDWEPNEIYSSFI 748
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 131 bits (281), Expect(2) = 1e-032
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MAKPGQADQLR+AGRL+IQY RVPC+W GM +AFKVDAGSN YLAVL+EYE GDG+L
Sbjct: 453 GGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAVLIEYEDGDGDL 632
Query: 440 RSVELMQ 420
SVELM+
Sbjct: 633 SSVELME 653
Score = 27.6 bits (54), Expect(2) = 1e-032
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2 / +1
Query: 371 WGXVWRXNSGATLQGPFSVRLTSGSGR 291
WG WR N G PF V + S R
Sbjct: 697 WGAGWRSNFGPMWMRPFWVASPAASAR 777
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 129 bits (276), Expect(2) = 6e-032
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MAKPGQADQLR+AGRL+IQY R PC+W GM +AFKVDAGSN YLAVL+EYE GDG+L
Sbjct: 403 GGMAKPGQADQLRAAGRLQIQYTRFPCNWRGMHVAFKVDAGSNPYYLAVLIEYEDGDGDL 582
Query: 440 RSVELMQ 420
SVELM+
Sbjct: 583 SSVELME 603
Score = 27.6 bits (54), Expect(2) = 6e-032
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNS 345
M SWG VWR NS
Sbjct: 634 MDPSWGAVWRYNS 672
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 86.8 bits (183), Expect(2) = 4e-031
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +S LQGPFS+R+TS SG+ +VA++VIPA W P YRS V FS
Sbjct: 508 MRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQFS 341
Score = 67.5 bits (141), Expect(2) = 4e-031
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2 / -2
Query: 590 QLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
+LR +G + IQ+ RVPC++ G+ I F V GSNA YLAVL+EYE DG++ V++ +
Sbjct: 703 KLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKE 533
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 83.5 bits (176), Expect(2) = 1e-030
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFSN*RW 204
M++SWG +WR +S LQ PFS+R+ + SG+T+VA +VIP W P YRS+V +S RW
Sbjct: 373 MRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQYS*IRW 194
Score = 69.3 bits (145), Expect(2) = 1e-030
Identities = 26/52 (50%), Positives = 39/52 (75%)
Frame = -2 / -2
Query: 575 GRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
G + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++ V+LM+
Sbjct: 568 GIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 413
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 91.3 bits (193), Expect(2) = 3e-030
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG+ D+LR AG + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++
Sbjct: 248 GKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDV 427
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 428 VQVDLME 448
Score = 60.2 bits (125), Expect(2) = 3e-030
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRS 231
M++SWG +WR +S LQ PFS+R+ + SG+T+VA VIP P Y S
Sbjct: 488 MRESWGFIWRLDSNHRLQAPFSIRIRNESGQTLVAR*VIPKKGRPNTLYCS 640
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 106 bits (226), Expect(3) = 3e-030
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAKPG AD+LR++G ++IQY RVPC + GM+IAFKVD GSN YL VL+E+E DG+L
Sbjct: 245 GAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLEVLIEFEDDDGDL 424
Query: 440 RSVELMQ 420
+V+LM+
Sbjct: 425 NTVDLME 445
Score = 33.1 bits (66), Expect(3) = 3e-030
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +1
Query: 275 DVIPAGWTPGATYRSVVNF 219
+V P W GATYRS+VN+
Sbjct: 586 NVFPVSWKAGATYRSLVNY 642
Score = 29.5 bits (58), Expect(3) = 3e-030
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2 / +2
Query: 350 NSGATLQGPFSVRLTSGS 297
N+G L+GPFS+R+TS S
Sbjct: 509 NTGKPLRGPFSLRVTSDS 562
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 91.3 bits (193), Expect(2) = 4e-030
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG+ D+LR AG + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++
Sbjct: 304 GKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDV 483
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 484 VQVDLME 504
Score = 59.7 bits (124), Expect(2) = 4e-030
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIP 264
M++SWG +WR +S LQ PFS+R+ + SG+T+VA +VIP
Sbjct: 544 MRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIP 663
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 96.4 bits (204), Expect(2) = 4e-030
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAKPG AD+LR+ G +R+QY RVPC + G++IAF+VD GSN Y L+E+E DG+L
Sbjct: 189 GAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFRVDQGSNPFYFKTLIEFEDDDGDL 368
Query: 440 RSVELMQ 420
++V L +
Sbjct: 369 KAVALKE 389
Score = 54.7 bits (113), Expect(2) = 4e-030
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDV 270
M Q WG +WR N+G L+ PFS+RLT SGR +V ++V
Sbjct: 414 MTQDWGALWRLNNGNRLRAPFSLRLTXDSGRKLVXNNV 527
>gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA01I15
5-PRIME, mRNA sequence
Length = 396
Score = 79.9 bits (168), Expect(2) = 2e-029
Identities = 27/61 (44%), Positives = 46/61 (75%)
Frame = -2 / +2
Query: 602 GQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELM 423
G D+LR AG + +Q+ RVPC + G+ + F V+ GSN Y+A+LVEY++GDG+++ +++M
Sbjct: 2 GTRDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYDNGDGDVKQLDIM 181
Query: 422 Q 420
+
Sbjct: 182 E 184
Score = 68.9 bits (144), Expect(2) = 2e-029
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRS 231
M++SWG +WR ++ ++GPF +R+T+ SG+T+VA VIP W P TY S
Sbjct: 242 MKESWGSIWRMDAHHPMRGPFWLRVTNESGKTLVADKVIPGDWKPNKTYSS 394
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 80.8 bits (170), Expect(2) = 4e-028
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG VWR +S LQ PFS+R+ + SG+T+VA+ VIPA W P YRS V +S
Sbjct: 184 MRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 351
Score = 63.4 bits (132), Expect(2) = 4e-028
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -2 / +1
Query: 563 IQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
I++ RVPC + G+ I F V+ SN Y AVLVEYE GDG++ V+LM+
Sbjct: 7 IEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLME 150
>gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D14
5-PRIME, mRNA sequence
Length = 606
Score = 79.0 bits (166), Expect(2) = 4e-028
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M +SWG +WR ++ +QGPFS+R+T+ SG+T+VA VIPA W P Y S++ F
Sbjct: 197 MTESWGSIWRMDTRRPMQGPFSLRITNESGKTLVADQVIPADWEPNEIYSSIIQF 361
Score = 65.2 bits (136), Expect(2) = 4e-028
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = -2 / +2
Query: 551 RVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
RVPC + G+ + F V GSN YLA+LVEYE+GDG++ V++MQ
Sbjct: 5 RVPCQYPGLTVTFHVQHGSNPYYLAILVEYENGDGDVDQVDMMQ 136
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 83.5 bits (176), Expect(2) = 6e-028
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFSN*RW 204
M++SWG +WR +S LQ PFS+R+ + SG+T+VA +VIP W P YRS+V +S RW
Sbjct: 169 MRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQYS*IRW 348
Score = 60.2 bits (125), Expect(2) = 6e-028
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = -2 / +1
Query: 548 VPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
V C + G+ + F V+ GSNA Y+A+LVEYE+GDG++ V+LM+
Sbjct: 1 VACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 129
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 80.8 bits (170), Expect(2) = 4e-027
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG VWR +S LQ PFS+R+ + SG+T+VA+ VIPA W P YRS V +S
Sbjct: 253 MRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 420
Score = 60.2 bits (125), Expect(2) = 4e-027
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -2 / +1
Query: 566 RIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
R + RVPC + G+ I F V+ SN Y AVLVEYE GDG++ V+LM+
Sbjct: 73 RHRVTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLME 219
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 83.5 bits (176), Expect(2) = 1e-026
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG D+LR +G + I++ RVPC + G+ I F V+ SN Y AVLVEYE GDG++
Sbjct: 70 GRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDV 249
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 250 VQVDLME 270
Score = 55.6 bits (115), Expect(2) = 1e-026
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSV 228
M++SWG VWR N LQ PF +++ G T+ S +P W PG R V
Sbjct: 304 MRESWGSVWRLNCNHRLQAPFCIQVRDKCGETLGGSMGVPGRWRPGTLCRCV 459
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 95.0 bits (201), Expect(2) = 6e-026
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAK G+ D+LR AG + +Q+ RVPC + G+ + F+V GSN NYLA+LVEYE GDG++
Sbjct: 153 GAMAKYGRNDELRHAGIIDMQFKRVPCQYPGLTVTFRVQHGSNPNYLAILVEYEDGDGDV 332
Query: 440 RSVELMQ 420
V++M+
Sbjct: 333 AQVDIME 353
Score = 41.8 bits (85), Expect(2) = 6e-026
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLT 306
M++SWG +WR + LQGPFS+R+T
Sbjct: 396 MRESWGSIWRLDRLRPLQGPFSLRVT 473
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 91.3 bits (193), Expect(2) = 1e-024
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG+ D+LR AG + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++
Sbjct: 421 GKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDV 600
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 601 VQVDLME 621
Score = 41.4 bits (84), Expect(2) = 1e-024
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDV 270
M +SWG +W +S LQ P S+R+ + SG+ + A +V
Sbjct: 663 MPESWGSIWGLDSXNRLQXPXSIRIRNESGKKLXARNV 776
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 92.7 bits (196), Expect(2) = 1e-024
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAKPG +++LR +G + IQ+ RVPC + G+ + F V+ GSN Y AVLVEYE GDG+L
Sbjct: 369 GAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYFAVLVEYEDGDGDL 548
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 549 VQVDLME 569
Score = 40.0 bits (81), Expect(2) = 1e-024
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGPFSV 315
M++SWG +WR SG LQ PFS+
Sbjct: 595 MRESWGSIWRVESGHRLQAPFSM 663
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 86.8 bits (183), Expect(2) = 2e-024
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +SG LQ PFS+R+T+ SG+T+VA VIPA W P YRS+V +S
Sbjct: 444 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQYS 277
Score = 45.1 bits (92), Expect(2) = 2e-024
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -2 / -2
Query: 509 VDAGSNANYLAVLVEYESGDGELRSVELMQ 420
V+ GSN Y AVLVEYE GDG++ V+LM+
Sbjct: 558 VEQGSNPVYFAVLVEYEDGDGDVVQVDLME 469
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 86.8 bits (183), Expect(2) = 2e-024
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +SG LQ PFS+R+T+ SG+T+VA VIPA W P YRS+V +S
Sbjct: 445 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQYS 278
Score = 45.1 bits (92), Expect(2) = 2e-024
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = -2 / -2
Query: 509 VDAGSNANYLAVLVEYESGDGELRSVELMQ 420
V+ GSN Y AVLVEYE GDG++ V+LM+
Sbjct: 559 VEQGSNPVYFAVLVEYEDGDGDVVQVDLME 470
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 91.3 bits (193), Expect(2) = 3e-024
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG+ D+LR AG + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++
Sbjct: 269 GKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDV 448
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 449 VQVDLME 469
Score = 40.0 bits (81), Expect(2) = 3e-024
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = -2 / +3
Query: 359 WRXNSGATLQGPFSVRLTSGSGRTVVASDV 270
WR +S LQ PFS+R+ + SG+T+VA +V
Sbjct: 534 WRLDSNHRLQAPFSIRIRNESGKTLVARNV 623
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 90.9 bits (192), Expect(2) = 2e-023
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G +AKPG+ D+LR AG + IQ+ RV C + G+ + F V+ GSNA Y+A+LVEYE+GDG++
Sbjct: 72 GKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDV 251
Query: 440 RSVELMQ 420
V+LM+
Sbjct: 252 VHVDLME 272
Score = 37.7 bits (76), Expect(2) = 2e-023
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIP 264
M +SWG +WR +Q P+S+R+ G T++ +IP
Sbjct: 312 MLKSWGSIWRLYYNHGIQTPYSIRIRCEFG*TLIMRILIP 431
>gb|BE193589.2|BE193589 HVSMEh0081M20f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M20f, mRNA sequence
Length = 520
Score = 103 bits (220), Expect(2) = 5e-023
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
M +SWG VWR NSG L PFSVRLTS SG+T+VAS+VIPAGW PG TYRSVVN+
Sbjct: 35 MDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 199
Score = 90.0 bits (190), Expect(2) = 7e-021
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1 / -2
Query: 223 LTTERYVAPGVHPAGMTSLATTVLPEPDVRRTEKGPCRVAPELXLHTXPHD 375
LTTER V PG PAGMT LAT VLPE +VRRTEKG C + PEL LHT PHD
Sbjct: 195 LTTER*VPPGFQPAGMTLLATRVLPELEVRRTEKGACNIGPELYLHTAPHD 43
Score = 29.9 bits (59), Expect(2) = 7e-021
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2 / -1
Query: 98 HTHSSNHKPSQRHA 139
H HSS HKP RHA
Sbjct: 301 HAHSSKHKPGWRHA 260
Score = 23.5 bits (45), Expect(2) = 5e-023
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3 / +2
Query: 175 ARPPAASLDGVEGVALAWFMIRAVRV 98
AR AA GVA +WFM A+ V
Sbjct: 224 ARKHAARSPVYRGVAPSWFMFGAMGV 301
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 106 bits (226), Expect = 1e-022
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMAKPG AD+LR++G ++IQY RVPC + GM+IAFKVD GSN YL VL+E+E DG+L
Sbjct: 261 GAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLEVLIEFEDDDGDL 440
Query: 440 RSVELMQ 420
+V+LM+
Sbjct: 441 NTVDLME 461
>gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
5-PRIME, mRNA sequence
Length = 540
Score = 86.8 bits (183), Expect(2) = 2e-022
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +S LQGPFS+R+TS SG+ +VA++VIPA W P YRS V FS
Sbjct: 119 MRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQFS 286
Score = 38.6 bits (78), Expect(2) = 2e-022
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -2 / +2
Query: 500 GSNANYLAVLVEYESGDGELRSVELMQ 420
GSNA YLAVL+EYE DG++ V++ +
Sbjct: 14 GSNAVYLAVLIEYEDMDGDVIQVDMKE 94
>gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. vulgare cDNA clone HF11E17
5-PRIME, mRNA sequence
Length = 538
Score = 86.8 bits (183), Expect(2) = 4e-021
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -2 / +2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTSGSGRTVVASDVIPAGWTPGATYRSVVNFS 216
M++SWG +WR +SG LQ PFS+R+T+ SG+T+VA VIPA W P YRS+V +S
Sbjct: 95 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQYS 262
Score = 34.1 bits (68), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -2 / +2
Query: 479 AVLVEYESGDGELRSVELMQ 420
AVLVEYE GDG++ V+LM+
Sbjct: 11 AVLVEYEDGDGDVVQVDLME 70
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 279,713,084
Number of Sequences: 312970
Number of extensions: 4376057
Number of successful extensions: 116920
Number of sequences better than 1.0e-020: 48
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6574589895
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)