TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU987084.1|BU987084 HF13M04r HF Hordeum vulgare subsp. v... 133 7e-031
gb|BU989178.1|BU989178 HF21A09r HF Hordeum vulgare subsp. v... 133 7e-031
gb|AV928811.1|AV928811 AV928811 K. Sato unpublished cDNA li... 126 1e-028
>gb|BU987084.1|BU987084 HF13M04r HF Hordeum vulgare subsp. vulgare cDNA clone HF13M04
5-PRIME, mRNA sequence
Length = 579
Score = 133 bits (286), Expect = 7e-031
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 118 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 297
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 298 MGRIITRNMVKALEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 477
>gb|BU989178.1|BU989178 HF21A09r HF Hordeum vulgare subsp. vulgare cDNA clone HF21A09
5-PRIME, mRNA sequence
Length = 576
Score = 133 bits (286), Expect = 7e-031
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 204 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 383
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 384 MGRIITRNMVKALEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 563
>gb|AV928811.1|AV928811 AV928811 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15m08 3', mRNA sequence
Length = 683
Score = 126 bits (270), Expect = 1e-028
Identities = 52/111 (46%), Positives = 73/111 (65%)
Frame = -1 / -2
Query: 607 DIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAI 428
DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+ GRI+TR +
Sbjct: 679 DIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTTMGRIITRNM 500
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 499 VKALEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 347
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 320,760,103
Number of Sequences: 312970
Number of extensions: 6240207
Number of successful extensions: 68586
Number of sequences better than 1.0e-020: 3
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7804674456
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)