TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU984150.1|BU984150 HF03C06r HF Hordeum vulgare subsp. v... 419 e-116
gb|AV833788.1|AV833788 AV833788 K. Sato unpublished cDNA li... 312 3e-084
gb|AV914518.1|AV914518 AV914518 K. Sato unpublished cDNA li... 155 1e-080
gb|AV915847.1|AV915847 AV915847 K. Sato unpublished cDNA li... 299 2e-080
gb|CA002338.1|CA002338 HS07D05r HS Hordeum vulgare subsp. v... 259 2e-068
gb|BM817163.1|BM817163 HC109F12_T3.ab1 HC Hordeum vulgare s... 207 4e-068
gb|AL505642.1|AL505642 AL505642 Hordeum vulgare Barke roots... 193 6e-063
gb|CA030920.1|CA030920 HX08I06r HX Hordeum vulgare subsp. v... 197 2e-058
gb|BQ466630.1|BQ466630 HS01B14T HS Hordeum vulgare subsp. v... 128 3e-049
gb|CK122142.1|CK122142 BES1824101j18 BES1824 Hordeum vulgar... 195 3e-049
gb|BQ471104.1|BQ471104 HX04P20r HX Hordeum vulgare subsp. v... 186 3e-048
gb|BI778119.2|BI778119 EBro07_SQ002_E13_R root, 3 week, red... 127 9e-047
gb|CK122504.1|CK122504 BES1824103l10 BES1824 Hordeum vulgar... 181 6e-046
gb|BQ466954.1|BQ466954 HS02B14r HS Hordeum vulgare subsp. v... 128 8e-046
gb|AL504985.1|AL504985 AL504985 Hordeum vulgare Barke roots... 156 2e-045
gb|CK122968.1|CK122968 BES1824101i10 BES1824 Hordeum vulgar... 179 3e-044
gb|BM377171.2|BM377171 EBem05_SQ004_F09_R embryo, 14 DPA, n... 178 4e-044
gb|BU985178.1|BU985178 HF06F18r HF Hordeum vulgare subsp. v... 103 8e-044
gb|BQ470109.1|BQ470109 HX01M20T HX Hordeum vulgare subsp. v... 175 5e-043
gb|CA007562.1|CA007562 HU08F12r HU Hordeum vulgare subsp. v... 95 3e-037
gb|BF263300.2|BF263300 HV_CEa0006G04f Hordeum vulgare seedl... 153 2e-036
gb|CA022571.1|CA022571 HZ43K15r HZ Hordeum vulgare subsp. v... 152 3e-036
gb|CA025783.1|CA025783 HZ53C03r HZ Hordeum vulgare subsp. v... 149 4e-035
gb|CA014967.1|CA014967 HT12O01r HT Hordeum vulgare subsp. v... 147 1e-034
gb|BU983168.1|BU983168 HA28M06r HA Hordeum vulgare subsp. v... 145 5e-034
gb|CA014919.1|CA014919 HT12L18r HT Hordeum vulgare subsp. v... 143 2e-033
gb|AV922039.1|AV922039 AV922039 K. Sato unpublished cDNA li... 132 3e-030
gb|BG415643.1|BG415643 HVSMEk0007E18f Hordeum vulgare testa... 105 1e-028
gb|AL506001.1|AL506001 AL506001 Hordeum vulgare Barke devel... 114 1e-024
gb|BU985537.1|BU985537 HF07O02r HF Hordeum vulgare subsp. v... 92 3e-022
gb|BU979456.1|BU979456 HA16D15r HA Hordeum vulgare subsp. v... 105 3e-022
gb|BI954836.1|BI954836 HVSMEm0019P22f Hordeum vulgare green... 102 4e-021
>gb|BU984150.1|BU984150 HF03C06r HF Hordeum vulgare subsp. vulgare cDNA clone HF03C06
5-PRIME, mRNA sequence
Length = 593
Score = 419 bits (910), Expect = e-116
Identities = 166/194 (85%), Positives = 182/194 (93%)
Frame = -1 / +3
Query: 921 TDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSPFAGF 742
TDGIDPDSSSN+CIEDCYISTGDD IAIKSGWDEYGIAYGRPSS IT+RRITGSSPFAGF
Sbjct: 12 TDGIDPDSSSNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSSDITIRRITGSSPFAGF 191
Query: 741 AVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVG 562
+VGSETSGGVENVLAEHLNF++SGFG+H+KTN+GRGGFIRNITVSDV LDNVRYGLRI
Sbjct: 192 SVGSETSGGVENVLAEHLNFYSSGFGVHIKTNSGRGGFIRNITVSDVILDNVRYGLRIAS 371
Query: 561 DVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAP 382
DVG HPD+ YN +ALPIVD+L +KNVQGQN++EAGLIKGIPNSAFSRICLSN+K G AP
Sbjct: 372 DVGGHPDERYNHNALPIVDSLMIKNVQGQNIKEAGLIKGIPNSAFSRICLSNIKLHGSAP 551
Query: 381 VRPWKCEAVSGGAL 340
VRPWKC+AVSGGAL
Sbjct: 552 VRPWKCQAVSGGAL 593
Score = 240 bits (519), Expect = 1e-062
Identities = 102/193 (52%), Positives = 125/193 (64%)
Frame = -3 / +2
Query: 925 QHGWN*SRFQQQHLHRGLLHFDW*RFHRHQEWLG*VWNRLWPPQFWNHRAADHRLLPVCW 746
+H WN*SRF+QQ +H GLLH D RHQEW+G*+W+ LWPPQ +H ADH LLP CW
Sbjct: 8 RH*WN*SRFEQQRVH*GLLHLDGR*PDRHQEWMG*IWHSLWPPQLRHHH*ADHGLLPFCW 187
Query: 745 LRGRKRDIRWRGERPCRTLELLQLRVWDPCQDQHRQGRLHQEHHCLGCDAG*RPVRPADR 566
L R+ D+RW GE P + LQLRVW QDQ RQGR+H +HHCL D G P+ D
Sbjct: 188 LFCRE*DLRWCGECPR*ASKFLQLRVWCSHQDQLRQGRVHSKHHCLRRDLGQCPLWSEDC 367
Query: 565 WRCRQSPRRQLQPECAPDRRRPYGKECPGPERQGGWADQGHPQLGLLPDLPVERQVHWWC 386
C ++ LQP+CAP+R +P KEC E QGGWADQGH +LG+LP L V W
Sbjct: 368 **CWRTS**ALQPQCAPNRGQPDDKECSRAEHQGGWADQGHSKLGVLPHLSV*H*APWQR 547
Query: 385 ACPAVEVRGCQRW 347
A P +E+ GC+ W
Sbjct: 548 ASPPMEMPGCEWW 586
Score = 227 bits (491), Expect = 7e-059
Identities = 104/193 (53%), Positives = 131/193 (67%)
Frame = +1 / -1
Query: 340 ESATADSLALPRPDRRTTSELDVRQADPGEGRVGDALDQPSLPDVLALDILYRKGVDDRE 519
E T SLA P D R EL+VRQ D GE RV +ALDQPSL DVL L+ILY + V D E
Sbjct: 593 ECTTTHSLAFPWADWRAAMELNVRQTDAGERRVWNALDQPSLLDVLPLNILYHQAVHDWE 414
Query: 520 RTPXXXXXXXXXXXXNDPQAVPDVIQRHIRDSDVPDEAAPACVGLDMDPKP*VEEVQVFC 699
R ++PQ + D++Q H+ DSDV +E +PA VGLD++ KP* E+ +
Sbjct: 413 RIVVVALIRMSSNITSNPQTITDIVQDHVGDSDVSNEPSPAGVGLDVNTKP*AVEI*MLS 234
Query: 700 KDVLHAT*CLASDREASKRGGACDPPHGDSRTGAAIGDSILIPATLDGDGIVTSRNVAIL 879
+D+LH T* L DR+ASKRGGA DPP+GD GAAIG +I IP+TLDGD +++ R+VAIL
Sbjct: 233 EDILHTT*GLTPDRKASKRGGARDPPNGDV*AGAAIGYAIFIPSTLDGDQVISRRDVAIL 54
Query: 880 DADVAAGIWINSI 918
+A VAA IWINSI
Sbjct: 53 NAHVAARIWINSI 15
Score = 207 bits (446), Expect(2) = 6e-076
Identities = 93/118 (78%), Positives = 99/118 (83%)
Frame = +2 / -2
Query: 569 IRRPYRTLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKP 748
I RP RTLS +TSETVMF M PPLP LVL PNPEL KF+CSARTFSTPP+VSLPT KP
Sbjct: 364 ILRP*RTLSKITSETVMFRMNPPLPELVLM*TPNPEL*KFRCSARTFSTPPEVSLPTEKP 185
Query: 749 ANGEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSV 922
A GEEPVIR V+ ELGRP*A+PYSS PLLMA+ SSPVEM*QSSM LLLESGSIPSV
Sbjct: 184 AKGEEPVIRLMVMSELGRP*AMPYSSHPLLMAIRSSPVEM*QSSMHTLLLESGSIPSV 11
Score = 187 bits (402), Expect = 1e-046
Identities = 88/164 (53%), Positives = 99/164 (60%)
Frame = +3 / -3
Query: 432 PSWGCP*SAQPP*RSGPGHSLP*GRRRSGAHSGCSCRRGDCRHRQRSAGRTGRYPASHPR 611
PS CP*SAQPP* S HSL G R GAH GCS + +H +S+ G P S R
Sbjct: 501 PSLECP*SAQPP*CSALEHSLSSGCPRLGAHCGCSAHQDVLQHH*QSSDHNGHCPRSRRR 322
Query: 612 Q*CS**SRPCLCWS*HGSQTLS*RSSSVLQGRSPRHLMSRFRPRSQQTGRSL*SAAR*FQ 791
Q*C *+ PC WS* QTLS R+ +G SP HL S R +SQQ GRS *SA *
Sbjct: 321 Q*CFE*TLPCRSWS*CEHQTLSCRNLDAQRGHSPHHLRSHSRQKSQQKGRSP*SA*W*CL 142
Query: 792 NWGGHRRFHTHPSHS*WRWNRHQSKCSNPRCRCCCWNLDQFHPC 923
+WGGHR H HP HS*WR S+CSNP+C CC NLDQFH C
Sbjct: 141 SWGGHRLCHIHPIHS*WRSGHLPSRCSNPQCTRCCSNLDQFHQC 10
Score = 170 bits (365), Expect = 2e-041
Identities = 97/187 (51%), Positives = 105/187 (56%)
Frame = -2 / +1
Query: 917 MELIQIPAATSASRIATFRLVTIPSPSRVAGMSMESPMAAPVLESPCGGSQAPPRLLASR 738
MELIQI AAT A RIAT R SPSRV GM+M PMAAP SP GGS+APP LLA
Sbjct: 16 MELIQIRAATCALRIATSRREMT*SPSRVDGMNMA*PMAAPAQTSPLGGSRAPPLLLAFL 195
Query: 737 SEARHQVAWRXXXXXXXXXXXXXXXSMSRPTQAGAASSGTSLSRM*RWITSGTACGSLAM 558
S R QV WR SRPT AG S TSLS * W S G L M
Sbjct: 196 SGVRPQVVWRMSSLSI*ISTAQGLVFTSRPTPAGEGSFETSLSPT*SWTMSVMV*GLLVM 375
Query: 557 SAITPTTATTGVRSRSSTPLR*RMSRARTSGRLG*SRASPTRPSPGSACRTSSSLVVRLS 378
+ATT +RS+S T *RM + RTS RLG*SRA TR SP S C T SS+ R S
Sbjct: 376 LEDILMSATTTMRSQSWTA***RMFKGRTSRRLG*SRAFQTRRSPASVCLTLSSMAARQS 555
Query: 377 GRGSARL 357
G+ARL
Sbjct: 556 AHGNARL 576
Score = 98.2 bits (208), Expect(2) = 6e-076
Identities = 42/57 (73%), Positives = 45/57 (78%)
Frame = +2 / -2
Query: 344 APPLTASHFHGRTGAPPVNLTFDRQIREKAELGMPLISPASLTFWPWTFFTVRASTI 514
APPLTA HFHGRTGA P +L DRQ+RE AE GMPLISPASL F P TFF +R STI
Sbjct: 589 APPLTAWHFHGRTGALPWSLMLDRQMRENAEFGMPLISPASLMFCP*TFFIIRLSTI 419
>gb|AV833788.1|AV833788 AV833788 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags19h20, mRNA sequence
Length = 617
Score = 312 bits (675), Expect = 3e-084
Identities = 126/155 (81%), Positives = 133/155 (85%)
Frame = -1 / +3
Query: 1173 GLQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWN 994
GLQDV GS WWDMWK L +TRPHLLELM SS+ IVSN+VFQDSPFWN
Sbjct: 153 GLQDVFITGENGTIDGQGSVWWDMWKKGTLPFTRPHLLELMDSSNAIVSNLVFQDSPFWN 332
Query: 993 IHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYG 814
IHPVYCSNVVIRN+TILAPHDSPNTDGIDPDSSSN+CIEDCYISTGDD IAIKSGWDEYG
Sbjct: 333 IHPVYCSNVVIRNLTILAPHDSPNTDGIDPDSSSNVCIEDCYISTGDDLIAIKSGWDEYG 512
Query: 813 IAYGRPSSGITVRRITGSSPFAGFAVGSETSGGVE 709
IAYGRPSS IT+RRITGSSPFAGF+VGSETS GVE
Sbjct: 513 IAYGRPSSDITIRRITGSSPFAGFSVGSETSXGVE 617
Score = 257 bits (555), Expect = 1e-067
Identities = 118/155 (76%), Positives = 126/155 (81%)
Frame = +2 / -2
Query: 710 STPPDVSLPTAKPANGEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQM 889
STP +VSLPT KPA GEEPVIR V+ ELGRP*A+PYSS PLLMA+ SSPVEM*QSSM
Sbjct: 616 STPXEVSLPTEKPAKGEEPVIRLMVMSELGRP*AMPYSSHPLLMAIRSSPVEM*QSSMHT 437
Query: 890 LLLESGSIPSVLGESCGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR* 1069
LLLESGSIPSVLGESCGA IV FLITTLLQ*TGWMFQNGES KT LET+ +E ISS R
Sbjct: 436 LLLESGSIPSVLGESCGASIVKFLITTLLQ*TGWMFQNGESWKTKLETIAFDESISSSRW 257
Query: 1070 GLV*SXXXXFHISHHALP*PPIVPFSPVMTTS*SP 1174
GLV FH+SHH LP P +VPFSPVM TS*SP
Sbjct: 256 GLVKGNVPFFHMSHHTLPCPSMVPFSPVMKTS*SP 152
Score = 224 bits (483), Expect = 9e-058
Identities = 95/154 (61%), Positives = 117/154 (75%)
Frame = +1 / -1
Query: 709 LHAT*CLASDREASKRGGACDPPHGDSRTGAAIGDSILIPATLDGDGIVTSRNVAILDAD 888
LH T* L DR+ASKRGGA DPP+GD GAAIG +I IP+TLDGD +++ R+VAIL+A
Sbjct: 617 LHTT*GLTPDRKASKRGGARDPPNGDV*AGAAIGYAIFIPSTLDGDQVISRRDVAILNAH 438
Query: 889 VAAGIWINSIRVGGVMWS*DSHVSDHNIAAINRMDVPEWRILKDDIGDNDIRRAHQLKKV 1068
VAA IWINSI VG VMWS S +SDH+IAAIN MDVP+WRIL++ IGDN IRR HQL+++
Sbjct: 437 VAARIWINSISVGRVMWSQYSQISDHHIAAINWMDVPKWRILENQIGDNSIRRVHQLEQM 258
Query: 1069 RPCVEQXXXLPHIPPRAALTTNSSILACDDNILK 1170
C Q LPH+PP L + +IL C++NILK
Sbjct: 257 GSCEGQCTLLPHVPPHTTLPIDGAILTCNENILK 156
Score = 210 bits (454), Expect = 9e-054
Identities = 90/153 (58%), Positives = 104/153 (67%)
Frame = -3 / +2
Query: 1168 SGCCHHRREWNYWWLRQRVVGYVEXXXXALHKASPS*ADELF*YHCLQCRLSGFAILEHP 989
SGC H+R EW++ W R VVG+VE ALHK + AD L +CLQ GFAILEHP
Sbjct: 158 SGCFHYR*EWHHRWAR*CVVGHVEEGYIALHKTPSARADGLVECYCLQFGFPGFAILEHP 337
Query: 988 SCLLQQCCDQKRDYPSST*LPQHGWN*SRFQQQHLHRGLLHFDW*RFHRHQEWLG*VWNR 809
S LLQQC DQK DY ST*L QH WN*SRF+QQ +H GLLH D RHQEW+G*+W+
Sbjct: 338 SSLLQQCGDQKFDYTGST*LSQH*WN*SRFEQQRVH*GLLHLDGR*PDRHQEWMG*IWHS 517
Query: 808 LWPPQFWNHRAADHRLLPVCWLRGRKRDIRWRG 710
LWPPQ +H ADH LLP CWL R+ D+ W G
Sbjct: 518 LWPPQLRHHH*ADHGLLPFCWLFCRE*DLXWCG 616
Score = 204 bits (440), Expect = 8e-052
Identities = 90/153 (58%), Positives = 101/153 (66%)
Frame = +3 / -3
Query: 711 PRHLMSRFRPRSQQTGRSL*SAAR*FQNWGGHRRFHTHPSHS*WRWNRHQSKCSNPRCRC 890
P H S R +SQQ GRS *SA * +WGGHR H HP HS*WR S+CSNP+C
Sbjct: 615 PHHXRSHSRQKSQQKGRSP*SA*W*CLSWGGHRLCHIHPIHS*WRSGHLPSRCSNPQCTR 436
Query: 891 CCWNLDQFHPCWGSHVELG*SRF*SQHCCNKQDGCSRMANPERRHWRQ*YQKSSSAQEGE 1070
CC NLDQFH CW SHVE *S F*S HCCNK DGCS+MANP + +WRQ*+ S SA+
Sbjct: 435 CCSNLDQFHQCWESHVEPV*SNF*SPHCCNKLDGCSKMANPGKPNWRQ*HSTSPSARADG 256
Query: 1071 ALCRAXXXXSTYPTTRCLNHQ*FHSRL**QHPE 1169
L RA ST PTT L H+ HS L**+HPE
Sbjct: 255 VL*RAMYPSSTCPTTHYLAHRWCHSHL**KHPE 157
Score = 127 bits (273), Expect(2) = 2e-032
Identities = 67/101 (66%), Positives = 69/101 (68%)
Frame = -2 / +1
Query: 1013 RIRHSGTSILFIAAML*SET*LS*LHMTPPTRMELIQIPAATSASRIATFRLVTIPSPSR 834
RIRH GTSI FIAAM *SE *L LHMT PT MELIQI AAT A RIAT R SPSR
Sbjct: 313 RIRHFGTSIQFIAAMW*SEI*LYWLHMTLPTLMELIQIRAATCALRIATSRREMT*SPSR 492
Query: 833 VAGMSMESPMAAPVLESPCGGSQAPPRLLASRSEARHQVAW 711
V GM+M PMAAP SP GGS+APP LLA S R V W
Sbjct: 493 VDGMNMA*PMAAPAQTSPLGGSRAPPLLLAFLSGVRPXVVW 615
Score = 31.8 bits (63), Expect(2) = 2e-032
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2 / +1
Query: 1169 FRMLSSQARMELLVVKAARGGICGXXXXCSTQ 1074
FRM S Q RM + K GG CG C +Q
Sbjct: 157 FRMFSLQVRMAPSMGKVVCGGTCGRRVHCPSQ 252
>gb|AV914518.1|AV914518 AV914518 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6l20 5', mRNA sequence
Length = 710
Score = 155 bits (333), Expect(3) = 1e-080
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = -1 / +1
Query: 1011 DSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKS 832
+SPFWNIHPVYCS V++ +VTILAP DSPNTDGI+PDSS+N+CI CY+ GDD I IKS
Sbjct: 94 NSPFWNIHPVYCSQVIVEHVTILAPLDSPNTDGINPDSSTNVCISHCYVRNGDDVIVIKS 273
Query: 831 GWDEYGIAYGRPSSGITVRRITGSS 757
GWDEYGI++ + SS I++ ITG +
Sbjct: 274 GWDEYGISFAQSSSNISISNITGET 348
Score = 144 bits (310), Expect(3) = 1e-080
Identities = 57/116 (49%), Positives = 81/116 (69%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
AG A+GSE SGG+ V AE L NS GI +KT GRGG++RN+ ++DV++ NV +R
Sbjct: 358 AGIAIGSEMSGGISEVRAEGLRIVNSLHGIRIKTAPGRGGYVRNVYIADVSMHNVSMAIR 537
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNV 403
I G+ G HPD Y+++ALPI+ +T++NV G +V AG+++GI FS IC+SNV
Sbjct: 538 ITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEGDNFSSICISNV 705
Score = 93.6 bits (198), Expect(3) = 1e-030
Identities = 48/82 (58%), Positives = 54/82 (65%)
Frame = +2 / -1
Query: 764 PVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGA 943
PV+ +I EL IPYSSQPLLM + SSP *Q MQ + ESG +PSV GES GA
Sbjct: 341 PVMLLMLILELDCANEIPYSSQPLLMTITSSPFLT*Q*LMQTFVEESGLMPSVFGESNGA 162
Query: 944 RIVTFLITTLLQ*TGWMFQNGE 1009
RIVT T LQ TGW+FQNGE
Sbjct: 161 RIVTCSTITWLQYTGWIFQNGE 96
Score = 84.9 bits (179), Expect(2) = 2e-022
Identities = 34/82 (41%), Positives = 51/82 (62%)
Frame = +1 / -3
Query: 766 CDPPHGDSRTGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS* 945
CD D +S+LIP T + + IV+ N+ + DA++ GIWIN++ V V W *
Sbjct: 339 CDVADADIGARLCK*NSVLIPTTFNDNNIVSVSNITMTDANICGGIWINAVGVW*VQWC* 160
Query: 946 DSHVSDHNIAAINRMDVPEWRI 1011
D V ++N+AAI RMD+P+WR+
Sbjct: 159 DCDVLNNNLAAIYRMDIPKWRV 94
Score = 52.8 bits (109), Expect(3) = 1e-030
Identities = 27/55 (49%), Positives = 30/55 (54%)
Frame = +2 / -1
Query: 587 TLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPA 751
TL +TS FL PP P VL IP E + SART PPD+SLP A PA
Sbjct: 521 TLCMLTSAIYTFLTYPPRPGAVLILIPCNEFTMRRPSARTSDMPPDISLPMAIPA 357
Score = 41.4 bits (84), Expect(2) = 2e-022
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1 / -3
Query: 565 NDPQAVPDVIQRHIRDSDVPDEAAPACVGLDMDPKP*VEEVQVFCKDVLHAT*CLASD 738
+DP D++ HI +P ++ + LD DP V + FC + +AT* L SD
Sbjct: 543 SDPDGHRDIVHAHISYIHIPYISSASWSSLDSDPMQRVHNAEAFCPNFRYAT*HLTSD 370
Score = 40.0 bits (81), Expect(3) = 1e-080
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = -1 / +3
Query: 1080 YTRPHLLELMSSSDIIVSNVVFQ 1012
YTRPHL+ELM S+ +++SN+ F+
Sbjct: 24 YTRPHLVELMYSTSVVISNLTFK 92
Score = 25.4 bits (49), Expect(3) = 1e-030
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1 / -1
Query: 1012 LKDDIGDNDIRRAHQLKKVRP 1074
L+ IG N+ HQL K+RP
Sbjct: 92 LESQIGYNNTGGVHQLNKMRP 30
>gb|AV915847.1|AV915847 AV915847 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16d24 5', mRNA sequence
Length = 625
Score = 299 bits (647), Expect = 2e-080
Identities = 117/142 (82%), Positives = 130/142 (91%)
Frame = -1 / +3
Query: 702 LAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRS 523
LA HLNF++SGFG+H+KTN+GRGGFIRNITVSDV LDNVRYGLRI GDVG HPD+ YN +
Sbjct: 3 LAXHLNFYSSGFGVHIKTNSGRGGFIRNITVSDVILDNVRYGLRIAGDVGGHPDERYNHN 182
Query: 522 ALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAPVRPWKCEAVSGGA 343
ALPIVD+L +KNVQGQN++EAGLIKGIPNSAFSRICLSN+K G APVRPWKC+AVSGGA
Sbjct: 183 ALPIVDSLMIKNVQGQNIKEAGLIKGIPNSAFSRICLSNIKLHGSAPVRPWKCQAVSGGA 362
Query: 342 LDVQPSPCTELTSTSGTSFCTN 277
LDVQPSPCTELTS SG SFCTN
Sbjct: 363 LDVQPSPCTELTSMSGMSFCTN 428
Score = 181 bits (389), Expect = 8e-045
Identities = 79/145 (54%), Positives = 96/145 (66%)
Frame = -3 / +2
Query: 688 ELLQLRVWDPCQDQHRQGRLHQEHHCLGCDAG*RPVRPADRWRCRQSPRRQLQPECAPDR 509
+ LQLRVW QDQ RQGR+H +HH L D G P+ D W C ++ LQP+CAP+R
Sbjct: 17 KFLQLRVWCSHQDQLRQGRVHSKHHRLRRDLGQCPLWSEDCW*CWRTS**ALQPQCAPNR 196
Query: 508 RRPYGKECPGPERQGGWADQGHPQLGLLPDLPVERQVHWWCACPAVEVRGCQRWRSRRAA 329
+P KEC E QGGWADQGH +LG+LP L V W A P +E+ GC+ W +RRAA
Sbjct: 197 GQPDDKECSRAEHQGGWADQGHSKLGVLPHLSV*H*APWQRASPPMEMPGCEWWCTRRAA 376
Query: 328 VPVHRTDFHVWDELLYKFALMLCQL 254
+PVHR D HV DELLYKF LML Q+
Sbjct: 377 IPVHRID*HVRDELLYKFPLMLNQV 451
Score = 159 bits (342), Expect = 3e-038
Identities = 72/140 (51%), Positives = 88/140 (62%)
Frame = +1 / -3
Query: 268 SKRICTEARPRRGSQFCARGRLHVESATADSLALPRPDRRTTSELDVRQADPGEGRVGDA 447
S+ ICTEA P SQFCARG LHVE T SLA P D R EL+VRQ D GE RV +A
Sbjct: 437 SEGICTEAHPGHASQFCARGWLHVECTTTHSLAFPWADWRAAMELNVRQTDAGERRVWNA 258
Query: 448 LDQPSLPDVLALDILYRKGVDDRERTPXXXXXXXXXXXXNDPQAVPDVIQRHIRDSDVPD 627
LDQPSL DVL L+ILY + V D ER ++PQ + D++Q H+ D DV +
Sbjct: 257 LDQPSLLDVLPLNILYHQAVHDWERIVVVALIRMSSNITSNPQTITDIVQDHVGDGDVSN 78
Query: 628 EAAPACVGLDMDPKP*VEEV 687
E +PA VGLD++ KP* E+
Sbjct: 77 EPSPAGVGLDVNTKP*AVEI 18
Score = 152 bits (326), Expect(2) = 5e-051
Identities = 64/99 (64%), Positives = 75/99 (75%)
Frame = +2 / -1
Query: 218 VDTEA*QQLRLS*LAKHQSEFVQKLVPDVEVSSVHGDGCTSRAPPLTASHFHGRTGAPPV 397
+ E ++ + L +HQ EFVQKL+PD+ V+SVHGDGCTS APPLTA HFHGRTGA P
Sbjct: 487 ISPEVETEIEVQDLIQHQREFVQKLIPDMLVNSVHGDGCTSSAPPLTAWHFHGRTGALPW 308
Query: 398 NLTFDRQIREKAELGMPLISPASLTFWPWTFFTVRASTI 514
+L DRQ+RE AE GMPLISPASL F P TFF +R STI
Sbjct: 307 SLMLDRQMRENAEFGMPLISPASLMFCP*TFFIIRLSTI 191
Score = 118 bits (252), Expect = 7e-026
Identities = 70/130 (53%), Positives = 76/130 (58%)
Frame = -2 / +1
Query: 656 SRPTQAGAASSGTSLSRM*RWITSGTACGSLAMSAITPTTATTGVRSRSSTPLR*RMSRA 477
SRPT AG S TS S * W S G L M +ATT +RS+S T *RM +
Sbjct: 49 SRPTPAGEGSFETSPSPT*SWTMSVMV*GLLVMLEDILMSATTTMRSQSWTA***RMFKG 228
Query: 476 RTSGRLG*SRASPTRPSPGSACRTSSSLVVRLSGRGSARLSAVALSTCSRPRAQN*LPRL 297
RTS RLG*SRA TR SP S C T SS+ R S G+ARL V STCS PRAQN*L
Sbjct: 229 RTSRRLG*SRAFQTRRSPASVCLTLSSMAARQSAHGNARL*VVVHSTCSHPRAQN*LACP 408
Query: 296 GRASVQIRFD 267
G ASVQI D
Sbjct: 409 G*ASVQIPSD 438
Score = 85.8 bits (181), Expect(2) = 2e-025
Identities = 44/91 (48%), Positives = 52/91 (57%)
Frame = +3 / -2
Query: 432 PSWGCP*SAQPP*RSGPGHSLP*GRRRSGAHSGCSCRRGDCRHRQRSAGRTGRYPASHPR 611
PS CP*SAQPP* S HSL G R GAH GCS + +H Q+S+ G P S R
Sbjct: 273 PSLECP*SAQPP*CSALEHSLSSGCPRLGAHCGCSAHQDVLQHHQQSSDHNGHCPRSRRR 94
Query: 612 Q*CS**SRPCLCWS*HGSQTLS*RSSSVLQG 704
+*C *+ PC WS* QTLS R+ +G
Sbjct: 93 R*CFE*TLPCRSWS*CEHQTLSCRNLDXQRG 1
Score = 69.8 bits (146), Expect(2) = 5e-051
Identities = 32/45 (71%), Positives = 34/45 (75%)
Frame = +2 / -1
Query: 569 IRRPYRTLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSAR 703
I RP RTLS +TSETVMF M PPLP LVL PNPEL KF+ SAR
Sbjct: 136 ILRP*RTLSKITSETVMFRMNPPLPELVLM*TPNPEL*KFRXSAR 2
Score = 50.6 bits (104), Expect(2) = 2e-025
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +3 / -2
Query: 276 NLYRSSSQTWKSVLCTGTAARRERHR*QPRTSTAGQA 386
NLYRSSS+T S+LCTG AARR H QP S G A
Sbjct: 429 NLYRSSSRTC*SILCTGMAARRVHHHSQPGISMGGLA 319
>gb|CA002338.1|CA002338 HS07D05r HS Hordeum vulgare subsp. vulgare cDNA clone HS07D05
5-PRIME, mRNA sequence
Length = 546
Score = 259 bits (560), Expect = 2e-068
Identities = 103/124 (83%), Positives = 112/124 (90%)
Frame = -1 / +3
Query: 648 NTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNV 469
N+GRGGFIRNITVSDV LDNVRYGLRI DVG HPD+ YN +ALPIVD+L +KNVQGQN+
Sbjct: 12 NSGRGGFIRNITVSDVILDNVRYGLRIASDVGGHPDERYNHNALPIVDSLMIKNVQGQNI 191
Query: 468 REAGLIKGIPNSAFSRICLSNVKFTGGAPVRPWKCEAVSGGALDVQPSPCTELTSTSGTS 289
+EAGLIKGIPNSAFSRICLSN+K G APVRPWKC+AVSGGALDVQPSPCTELTS SG S
Sbjct: 192 KEAGLIKGIPNSAFSRICLSNIKLHGSAPVRPWKCQAVSGGALDVQPSPCTELTSMSGMS 371
Query: 288 FCTN 277
FCTN
Sbjct: 372 FCTN 383
Score = 162 bits (348), Expect = 4e-039
Identities = 71/132 (53%), Positives = 87/132 (65%)
Frame = -3 / +2
Query: 649 QHRQGRLHQEHHCLGCDAG*RPVRPADRWRCRQSPRRQLQPECAPDRRRPYGKECPGPER 470
Q RQGR+H +HHCL D G P+ D C ++ LQP+CAP+R +P KEC E
Sbjct: 11 QLRQGRVHSKHHCLRRDLGQCPLWSEDC**CWRTS**ALQPQCAPNRGQPDDKECSRAEH 190
Query: 469 QGGWADQGHPQLGLLPDLPVERQVHWWCACPAVEVRGCQRWRSRRAAVPVHRTDFHVWDE 290
QGGWADQGH +LG+LP L V W A P +E+ GC+ W +RRAA+PVHR D HV DE
Sbjct: 191 QGGWADQGHSKLGVLPHLSV*H*APWQRASPPMEMPGCEWWCTRRAAIPVHRID*HVRDE 370
Query: 289 LLYKFALMLCQL 254
LLYKF LML Q+
Sbjct: 371 LLYKFPLMLNQV 406
Score = 152 bits (326), Expect(2) = 5e-044
Identities = 64/99 (64%), Positives = 75/99 (75%)
Frame = +2 / -3
Query: 218 VDTEA*QQLRLS*LAKHQSEFVQKLVPDVEVSSVHGDGCTSRAPPLTASHFHGRTGAPPV 397
+ E ++ + L +HQ EFVQKL+PD+ V+SVHGDGCTS APPLTA HFHGRTGA P
Sbjct: 442 ISPEVETEIEVQDLIQHQREFVQKLIPDMLVNSVHGDGCTSSAPPLTAWHFHGRTGALPW 263
Query: 398 NLTFDRQIREKAELGMPLISPASLTFWPWTFFTVRASTI 514
+L DRQ+RE AE GMPLISPASL F P TFF +R STI
Sbjct: 262 SLMLDRQMRENAEFGMPLISPASLMFCP*TFFIIRLSTI 146
Score = 144 bits (310), Expect = 7e-034
Identities = 66/127 (51%), Positives = 79/127 (62%)
Frame = +1 / -2
Query: 268 SKRICTEARPRRGSQFCARGRLHVESATADSLALPRPDRRTTSELDVRQADPGEGRVGDA 447
S+ ICTEA P SQFCARG LHVE T SLA P D R EL+VRQ D GE RV +A
Sbjct: 392 SEGICTEAHPGHASQFCARGWLHVECTTTHSLAFPWADWRAAMELNVRQTDAGERRVWNA 213
Query: 448 LDQPSLPDVLALDILYRKGVDDRERTPXXXXXXXXXXXXNDPQAVPDVIQRHIRDSDVPD 627
LDQPSL DVL L+ILY + V D ER ++PQ + D++Q H+ DSDV +
Sbjct: 212 LDQPSLLDVLPLNILYHQAVHDWERIVVVALIRMSSNITSNPQTITDIVQDHVGDSDVSN 33
Query: 628 EAAPACV 648
E +PA V
Sbjct: 32 EPSPAGV 12
Score = 114 bits (243), Expect = 1e-024
Identities = 68/127 (53%), Positives = 74/127 (58%)
Frame = -2 / +1
Query: 647 TQAGAASSGTSLSRM*RWITSGTACGSLAMSAITPTTATTGVRSRSSTPLR*RMSRARTS 468
T AG S TSLS * W S G L M +ATT +RS+S T *RM + RTS
Sbjct: 13 TPAGEGSFETSLSPT*SWTMSVMV*GLLVMLEDILMSATTTMRSQSWTA***RMFKGRTS 192
Query: 467 GRLG*SRASPTRPSPGSACRTSSSLVVRLSGRGSARLSAVALSTCSRPRAQN*LPRLGRA 288
RLG*SRA TR SP S C T SS+ R S G+ARL V STCS PRAQN*L G A
Sbjct: 193 RRLG*SRAFQTRRSPASVCLTLSSMAARQSAHGNARL*VVVHSTCSHPRAQN*LACPG*A 372
Query: 287 SVQIRFD 267
SVQI D
Sbjct: 373 SVQIPSD 393
Score = 70.3 bits (147), Expect(2) = 8e-021
Identities = 35/70 (50%), Positives = 40/70 (57%)
Frame = +3 / -1
Query: 432 PSWGCP*SAQPP*RSGPGHSLP*GRRRSGAHSGCSCRRGDCRHRQRSAGRTGRYPASHPR 611
PS CP*SAQPP* S HSL G R GAH GCS + +H +S+ G P S R
Sbjct: 228 PSLECP*SAQPP*CSALEHSLSSGCPRLGAHCGCSAHQDVLQHH*QSSDHNGHCPRSRRR 49
Query: 612 Q*CS**SRPC 641
Q*C *+ PC
Sbjct: 48 Q*CFE*TLPC 19
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +3 / -1
Query: 276 NLYRSSSQTWKSVLCTGTAARRERHR*QPRTSTAGQA 386
NLYRSSS+T S+LCTG AARR H QP S G A
Sbjct: 384 NLYRSSSRTC*SILCTGMAARRVHHHSQPGISMGGLA 274
Score = 46.4 bits (95), Expect(2) = 5e-044
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +2 / -3
Query: 569 IRRPYRTLSSVTSETVMFLMKPPLPVL 649
I RP RTLS +TSETVMF M PPLP L
Sbjct: 91 ILRP*RTLSKITSETVMFRMNPPLPEL 11
>gb|BM817163.1|BM817163 HC109F12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109F12_T3.ab1 similar to Polygalacturonase,, mRNA
sequence
Length = 864
Score = 207 bits (446), Expect(2) = 4e-068
Identities = 77/138 (55%), Positives = 101/138 (73%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G+ WWD + L YTRPHL+ELM S+ +++SN+ F++SPFWNI
Sbjct: 241 LTDVIITGANGTIDGQGAYWWDWFHNHTLNYTRPHLVELMYSTSVVISNLTFKNSPFWNI 420
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HPVYCS V++ +VTILAP DSPNTDGI+PDSS+N+CI CY+ GDD I IKSGWDEYGI
Sbjct: 421 HPVYCSQVIVEHVTILAPLDSPNTDGINPDSSTNVCISHCYVRNGDDVIVIKSGWDEYGI 600
Query: 810 AYGRPSSGITVRRITGSS 757
++ + SS I++ ITG +
Sbjct: 601 SFAQSSSNISISNITGET 654
Score = 127 bits (272), Expect(2) = 6e-036
Identities = 70/134 (52%), Positives = 82/134 (61%)
Frame = +2 / -2
Query: 764 PVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGA 943
PV+ +I EL IPYSSQPLLM + SSP *Q MQ + ESG +PSV GES GA
Sbjct: 647 PVMLLMLILELDCANEIPYSSQPLLMTITSSPFLT*Q*LMQTFVEESGLMPSVFGESNGA 468
Query: 944 RIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHHALP 1123
RIVT T LQ TGW+FQNGE K L+ E I+S R GLV* ++ SH P
Sbjct: 467 RIVTCSTITWLQYTGWIFQNGEFLKVKLDITTLVEYINSTRCGLV*LRVWLWNQSHQ*AP 288
Query: 1124 *PPIVPFSPVMTTS 1165
*P IVP +PV+ TS
Sbjct: 287 *PSIVPLAPVIITS 246
Score = 120 bits (257), Expect(2) = 3e-033
Identities = 52/126 (41%), Positives = 75/126 (59%)
Frame = +1 / -1
Query: 766 CDPPHGDSRTGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS* 945
CD D +S+LIP T + + IV+ N+ + DA++ GIWIN++ V V W *
Sbjct: 645 CDVADADIGARLCK*NSVLIPTTFNDNNIVSVSNITMTDANICGGIWINAVGVW*VQWC* 466
Query: 946 DSHVSDHNIAAINRMDVPEWRILKDDIGDNDIRRAHQLKKVRPCVEQXXXLPHIPPRAAL 1125
D V ++N+AAI RMD+P+WR+L+ IG N+ HQL K+RP + + + IPP L
Sbjct: 465 DCDVLNNNLAAIYRMDIPKWRVLESQIGYNNTGGVHQLNKMRPGIIKSVVVEPIPPIGPL 286
Query: 1126 TTNSSI 1143
T N SI
Sbjct: 285 TINCSI 268
Score = 72.1 bits (151), Expect(2) = 4e-068
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
AG A+GSE SGG+ V AE L NS GI +KT GR + RN+ ++DV++ NV +R
Sbjct: 664 AGIAIGSEMSGGISEVRAEGLRIVNSLHGIRIKTAPGRXRYXRNVYIADVSMHNVSMAIR 843
Query: 570 IVGD 559
I G+
Sbjct: 844 ITGN 855
Score = 44.1 bits (90), Expect(2) = 6e-036
Identities = 25/55 (45%), Positives = 28/55 (50%)
Frame = +2 / -2
Query: 587 TLSSVTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPA 751
TL +TS FL P VL IP E + SART PPD+SLP A PA
Sbjct: 827 TLCMLTSAIYTFLXYLXRPGAVLILIPCNEFTMRRPSARTSDMPPDISLPMAIPA 663
Score = 41.8 bits (85), Expect(2) = 3e-033
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1 / -1
Query: 565 NDPQAVPDVIQRHIRDSDVPDEAAPACVGLDMDPKP*VEEVQVFCKDVLHAT*CLASD 738
+DP D++ HI +P + + LD DP V + FC + +AT* L SD
Sbjct: 849 SDPDGHRDIVHAHISYIHIPXISXASWSSLDSDPMQRVHNAEAFCPNFRYAT*HLTSD 676
>gb|AL505642.1|AL505642 AL505642 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09B11V 5', mRNA sequence
Length = 500
Score = 193 bits (416), Expect(2) = 6e-063
Identities = 70/110 (63%), Positives = 91/110 (82%)
Frame = -1 / +2
Query: 1086 LLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGID 907
L YTRPHL+ELM S+ +++SN+ F++SPFWNIHPVYCS V++ +VTILAP DSPNTDGI+
Sbjct: 8 LSYTRPHLVELMYSTSVVISNLTFKNSPFWNIHPVYCSQVIVEHVTILAPLDSPNTDGIN 187
Query: 906 PDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSS 757
PDSS+N+CI CY+ GDD I IKSGWDEYGI++ + SS I++ ITG +
Sbjct: 188 PDSSTNVCISHCYVRNGDDVIVIKSGWDEYGISFAQSSSNISISNITGET 337
Score = 105 bits (225), Expect(2) = 4e-031
Identities = 41/88 (46%), Positives = 61/88 (69%)
Frame = +1 / -2
Query: 811 DSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS*DSHVSDHNIAAINRM 990
+S+LIP T + + IV+ N+ + DA++ GIWIN++ V V W *D V ++N+AAI RM
Sbjct: 283 NSVLIPTTFNDNNIVSVSNITMTDANICGGIWINAVGVW*VQWC*DCDVLNNNLAAIYRM 104
Query: 991 DVPEWRILKDDIGDNDIRRAHQLKKVRP 1074
D+P+WR+L+ IG N+ HQL K+RP
Sbjct: 103 DIPKWRVLESQIGYNNTGGVHQLNKMRP 20
Score = 105 bits (223), Expect(2) = 1e-025
Identities = 58/106 (54%), Positives = 66/106 (62%)
Frame = +2 / -3
Query: 764 PVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGA 943
PV+ +I EL IPYSSQPLLM + SSP *Q MQ + ESG +PSV GES GA
Sbjct: 330 PVMLLMLILELDCANEIPYSSQPLLMTITSSPFLT*Q*LMQTFVEESGLMPSVFGESNGA 151
Query: 944 RIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV* 1081
RIVT T LQ TGW+FQNGE K L+ E I+S R GLV*
Sbjct: 150 RIVTCSTITWLQYTGWIFQNGEFLKVKLDITTLVEYINSTRCGLV* 13
Score = 68.4 bits (143), Expect(2) = 6e-063
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVT 598
AG A+GSE SGG+ V AE L NS GI +KT GRGG++RN+ ++DV+
Sbjct: 347 AGIAIGSEMSGGISEVRAEGLRIVNSLHGIRIKTAPGRGGYVRNVYIADVS 499
Score = 49.6 bits (102), Expect(2) = 4e-031
Identities = 25/51 (49%), Positives = 28/51 (54%)
Frame = +2 / -3
Query: 599 VTSETVMFLMKPPLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTAKPA 751
+TS FL PP P VL IP E + SART PPD+SLP A PA
Sbjct: 498 LTSAIYTFLTYPPRPGAVLILIPCNEFTMRRPSARTSDMPPDISLPMAIPA 346
Score = 32.2 bits (64), Expect(2) = 1e-025
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1 / -2
Query: 601 HIRDSDVPDEAAPACVGLDMDPKP*VEEVQVFCKDVLHAT*CLASD 738
HI +P ++ + LD DP V + FC + +AT* L SD
Sbjct: 496 HISYIHIPYISSASWSSLDSDPMQRVHNAEAFCPNFRYAT*HLTSD 359
>gb|CA030920.1|CA030920 HX08I06r HX Hordeum vulgare subsp. vulgare cDNA clone HX08I06
5-PRIME, mRNA sequence
Length = 618
Score = 197 bits (424), Expect(3) = 2e-058
Identities = 78/120 (65%), Positives = 91/120 (75%)
Frame = -1 / +2
Query: 1113 WWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPH 934
WWD + L YTR +LLEL+ S DII+SNV F D+P WN+HP YC+NV I VTILAP
Sbjct: 44 WWDKFHAKELDYTRGYLLELLYSRDIIISNVTFVDAPSWNLHPTYCTNVTISGVTILAPV 223
Query: 933 DSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
SPNTDGIDPDSSS++ IEDCYI +GDD IA+KSGWDEYGI + PS I VRR+T SP
Sbjct: 224 HSPNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGIRFNMPSQHIVVRRLTCISP 403
Score = 134 bits (288), Expect(3) = 3e-035
Identities = 73/134 (54%), Positives = 84/134 (62%)
Frame = +2 / -1
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
GE V T + LG +PYSSQPL AM+SSP M*QSS+ ESGSIPSV GE
Sbjct: 402 GEMQVSLLTTMCWLGMLNRMPYSSQPLFTAMQSSPDTM*QSSILT*DEESGSIPSVFGEW 223
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHH 1114
GARIVT L+ TL+Q* GW FQ G S K TLE M+S E SS R* V*S +++SHH
Sbjct: 222 TGARIVTPLMVTLVQ*VGWRFQEGASTKVTLEMMMSRE*RSSSR*PRV*SSSLAWNLSHH 43
Query: 1115 ALP*PPIVPFSPVM 1156
P P +VP P M
Sbjct: 42 TCPCPLMVPLLPEM 1
Score = 35.9 bits (72), Expect(3) = 2e-058
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1 / +2
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRG 634
A A+GSE SGG+++V E N+ + +K+ GRG
Sbjct: 410 AMIALGSEMSGGIQDVRVEDNIAINTESAVRIKSGVGRG 526
Score = 32.7 bits (65), Expect(3) = 2e-058
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1 / +3
Query: 642 GRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHP 544
G GGF+R++ V ++L +++ + G+ G HP
Sbjct: 519 GGGGFVRDVFVRRLSLHTMKWVFWMTGNYGQHP 617
Score = 29.0 bits (57), Expect(3) = 3e-035
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2 / -1
Query: 635 PLPVLVLTWIPNPELKKFKCSARTFSTPPDVSLPTA 742
PLP L + L S RT PPD+SLP A
Sbjct: 525 PLPTPDLILTADSVLMAMLSSTRTSWMPPDISLPRA 418
Score = 23.5 bits (45), Expect(3) = 3e-035
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / -2
Query: 592 IQRHIRDSDVPDEAAPA 642
++ DVPDEAAP+
Sbjct: 569 VEAEAAHEDVPDEAAPS 519
>gb|BQ466630.1|BQ466630 HS01B14T HS Hordeum vulgare subsp. vulgare cDNA clone HS01B14
5-PRIME, mRNA sequence
Length = 682
Score = 128 bits (275), Expect(3) = 3e-049
Identities = 50/119 (42%), Positives = 75/119 (63%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
A A GSE SGG+ +V + L+ S GI +T GRGG+IR+ VSDV ++N+ +
Sbjct: 169 AALAFGSEMSGGISDVHVDQLHIHGSAKGISFRTAPGRGGYIRDAIVSDVQMENIHVAIE 348
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFT 394
GD +HP D ++ SALP++ +T+K++ G N+ AG++ GI F+ ICLSN+ FT
Sbjct: 349 FTGDWSSHPGDHFDPSALPVISGITLKDMVGTNISVAGVLSGIDGDPFTNICLSNINFT 525
Score = 72.1 bits (151), Expect(3) = 3e-049
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = -1 / +1
Query: 909 DPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
+ DS SN+CIE+ IS G D+I++KSGWD+YGI +GRP+S I + R+
Sbjct: 7 EADSCSNMCIENSRISVGHDAISLKSGWDKYGITFGRPTSDIHISRV 147
Score = 33.6 bits (67), Expect(3) = 3e-049
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1 / +1
Query: 408 NVKFTGGAPVRPWKCEAVSGGALDVQPSPCTELTSTSGTS 289
N A W C +SG + V P PC++L S S S
Sbjct: 517 NFTIADSAHSASWSCSNISGYSESVFPEPCSDLHSQSSNS 636
>gb|CK122142.1|CK122142 BES1824101j18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J181 5-PRIME, mRNA sequence
Length = 770
Score = 195 bits (421), Expect = 3e-049
Identities = 81/139 (58%), Positives = 95/139 (68%)
Frame = -1 / +3
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G WWD + L YTR +LLEL+ S DII+SNV F D+P WN+
Sbjct: 321 LTDVIISGNNGTINGQGQVWWDKFHAKELDYTRGYLLELLYSRDIIISNVTFVDAPSWNL 500
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HP YC+NV I VTILAP SPNTDGIDPDSSS++ IEDCYI +GDD IA+KSGWDEYGI
Sbjct: 501 HPTYCTNVTISGVTILAPVHSPNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGI 680
Query: 810 AYGRPSSGITVRRITGSSP 754
+ S I VRR+T SP
Sbjct: 681 RFNMXSQHIVVRRLTCISP 737
Score = 135 bits (289), Expect = 5e-031
Identities = 74/137 (54%), Positives = 85/137 (62%)
Frame = +2 / -2
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
GE V T + L +PYSSQPL AM+SSP M*QSS+ ESGSIPSV GE
Sbjct: 736 GEMQVSLLTTMCWLXMLNRMPYSSQPLFTAMQSSPDTM*QSSILT*DEESGSIPSVFGEW 557
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHH 1114
GARIVT L+ TL+Q* GW FQ G S K TLE M+S E SS R* V*S +++SHH
Sbjct: 556 TGARIVTPLMVTLVQ*VGWRFQEGASTKVTLEMMMSRE*RSSSR*PRV*SSSLAWNLSHH 377
Query: 1115 ALP*PPIVPFSPVMTTS 1165
P P +VP P M TS
Sbjct: 376 TCPCPLMVPLLPEMMTS 326
>gb|BQ471104.1|BQ471104 HX04P20r HX Hordeum vulgare subsp. vulgare cDNA clone HX04P20
5-PRIME, mRNA sequence
Length = 502
Score = 186 bits (400), Expect(2) = 3e-048
Identities = 72/122 (59%), Positives = 89/122 (72%)
Frame = -1 / +2
Query: 1119 SAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILA 940
+ WW +K L YTR +L+ELM + + +SNV +SP WNIHPVY N+V+ VTILA
Sbjct: 50 ATWWSKYKSGKLKYTRGYLIELMHTDGVFISNVTLVNSPAWNIHPVYSRNIVVSGVTILA 229
Query: 939 PHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGS 760
P SPNTDGI+PDS S + IEDCY+ +GDD +AIKSGWDEYGIA G PS I+VRR+T
Sbjct: 230 PVKSPNTDGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGIAVGMPSEHISVRRLTCV 409
Query: 759 SP 754
SP
Sbjct: 410 SP 415
Score = 128 bits (275), Expect(2) = 2e-032
Identities = 68/135 (50%), Positives = 79/135 (58%)
Frame = +2 / -2
Query: 755 GEEPVIRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGES 934
G+ V RRT + LG P A+PYSSQPLLMA +SSP *QSSM+ ESG +PSVLG+
Sbjct: 414 GDTQVRRRTEMCSLGMPTAMPYSSQPLLMATQSSPETT*QSSMRTWEHESGLMPSVLGDL 235
Query: 935 CGARIVTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHH 1114
GAR+VT L T L TGWMF GE TLE ISS R V ++ HH
Sbjct: 234 TGARMVTPLTTMLRLYTGWMFHAGEFTSVTLEMKTPSVCISSMRYPRVYLSLPDLYLDHH 55
Query: 1115 ALP*PPIVPFSPVMT 1159
P P +VP PVMT
Sbjct: 54 VAPCPSMVPLFPVMT 10
Score = 116 bits (249), Expect = 2e-025
Identities = 52/135 (38%), Positives = 81/135 (60%)
Frame = +1 / -1
Query: 754 RGGACDPPHGDSRTGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGV 933
RG A + H D G A GD++L+PA LDG +V +VA+LDA + A + ++++RVG +
Sbjct: 415 RGHAGEAAHRDVLAGHADGDAVLVPAALDGHAVVAGDDVAVLDAHLGARVRVDAVRVGRL 236
Query: 934 MWS*DSHVSDHNIAAINRMDVPEWRILKDDIGDNDIRRAHQLKKVRPCVEQXXXLPHIPP 1113
D H + H++AA++R+DVP R+ + D+GD D HQL +V V + L PP
Sbjct: 235 DGRQDGHPAHHDVAAVHRVDVPRRRVHERDVGDEDAVGVHQLDEVPAGVLELAGLVLGPP 56
Query: 1114 RAALTTNSSILACDD 1158
R AL + +++ DD
Sbjct: 55 RGALPVDGAVVPRDD 11
Score = 30.9 bits (61), Expect(2) = 2e-032
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2 / -2
Query: 695 SARTFSTPPDVSLPTAKPANGEEPVIRR 778
SART PPD+SLP+A A + +RR
Sbjct: 477 SARTSRMPPDISLPSAITALVGDTQVRR 394
Score = 26.7 bits (52), Expect(2) = 3e-048
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1 / +2
Query: 750 AGFAVGSETSGGVENVLAEHL 688
A A+GSE SGG+ +V AE +
Sbjct: 422 AVIALGSEMSGGIRDVRAEDI 484
>gb|BI778119.2|BI778119 EBro07_SQ002_E13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_E13 5', mRNA sequence
Length = 525
Score = 127 bits (271), Expect(2) = 9e-047
Identities = 51/77 (66%), Positives = 60/77 (77%)
Frame = -1 / +3
Query: 984 VYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAY 805
VY N+V+ VTILAP SPNTDGI+PDS S + IEDCY+ +GDD +AIKSGWDEYGIA
Sbjct: 3 VYSRNIVVSGVTILAPVKSPNTDGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGIAV 182
Query: 804 GRPSSGITVRRITGSSP 754
G PS I+VRR+T SP
Sbjct: 183 GMPSEHISVRRLTCVSP 233
Score = 80.8 bits (170), Expect(2) = 9e-047
Identities = 31/94 (32%), Positives = 57/94 (60%)
Frame = -1 / +3
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
A A+GSE SGG+ +V AE + + + +KT GRG ++R++ + LD ++
Sbjct: 240 AVIALGSEMSGGIRDVRAEDITAIGTESAVRIKTAVGRGAYVRDVYARRMRLDGMKRVFW 419
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNV 469
+ GD +HPDD Y+++A+P+V+ ++ ++V V
Sbjct: 420 MTGDYKSHPDDGYDKAAVPVVENISYQDVVATGV 521
>gb|CK122504.1|CK122504 BES1824103l10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L103 5-PRIME, mRNA sequence
Length = 732
Score = 181 bits (389), Expect(2) = 6e-046
Identities = 73/120 (60%), Positives = 85/120 (70%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G WWD + L YTR +LLEL+ S DII+SNV F D+P WN+
Sbjct: 254 LTDVIISGNNGTINGQGQVWWDKFHAKELDYTRGYLLELLYSRDIIISNVTFVDAPSWNL 433
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HP YC+NV I VTILAP SPNTDGIDPDSSS++ IEDCYI +GDD IA+KSGWDEYGI
Sbjct: 434 HPTYCTNVTISGVTILAPVHSPNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGI 613
Score = 135 bits (289), Expect(2) = 4e-032
Identities = 69/118 (58%), Positives = 79/118 (66%)
Frame = +2 / -1
Query: 812 IPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGARIVTFLITTLLQ*TGW 991
+PYSSQPL AM+SSP M*QSS+ ESGSIPSV GE GARIVT L+ TL+Q* GW
Sbjct: 612 MPYSSQPLFTAMQSSPDTM*QSSILT*DEESGSIPSVFGEWTGARIVTPLMVTLVQ*VGW 433
Query: 992 MFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHHALP*PPIVPFSPVMTTS 1165
FQ G S K TLE M+S E SS R* V*S +++SHH P P +VP P M TS
Sbjct: 432 RFQEGASTKVTLEMMMSRE*RSSSR*PRV*SSSLAWNLSHHTCPCPLMVPLLPEMMTS 259
Score = 24.0 bits (46), Expect(2) = 6e-046
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 750 AGFAVGSETSGGVENV 703
A A+GSE SGG+++V
Sbjct: 678 AMIALGSEMSGGIQDV 725
Score = 23.5 bits (45), Expect(2) = 4e-032
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 701 RTFSTPPDVSLPTA 742
RT PPD+SLP A
Sbjct: 727 RTSWMPPDISLPRA 686
>gb|BQ466954.1|BQ466954 HS02B14r HS Hordeum vulgare subsp. vulgare cDNA clone HS02B14
5-PRIME, mRNA sequence
Length = 604
Score = 128 bits (275), Expect(3) = 8e-046
Identities = 50/119 (42%), Positives = 75/119 (63%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
A A GSE SGG+ +V + L+ S GI +T GRGG+IR+ VSDV ++N+ +
Sbjct: 169 AALAFGSEMSGGISDVHVDQLHIHGSAKGISFRTAPGRGGYIRDAIVSDVQMENIHVAIE 348
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFT 394
GD +HP D ++ SALP++ +T+K++ G N+ AG++ GI F+ ICLSN+ FT
Sbjct: 349 FTGDWSSHPGDHFDPSALPVISGITLKDMVGTNISVAGVLSGIDGDPFTNICLSNINFT 525
Score = 72.1 bits (151), Expect(3) = 8e-046
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = -1 / +1
Query: 909 DPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
+ DS SN+CIE+ IS G D+I++KSGWD+YGI +GRP+S I + R+
Sbjct: 7 EADSCSNMCIENSRISVGHDAISLKSGWDKYGITFGRPTSDIHISRV 147
Score = 22.1 bits (42), Expect(3) = 8e-046
Identities = 9/29 (31%), Positives = 11/29 (37%)
Frame = -1 / +1
Query: 408 NVKFTGGAPVRPWKCEAVSGGALDVQPSP 322
N A W C +SG + V P P
Sbjct: 517 NFTIADSAHSASWSCSNISGYSESVFPEP 603
>gb|AL504985.1|AL504985 AL504985 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07A11V 5', mRNA sequence
Length = 696
Score = 156 bits (336), Expect(2) = 2e-045
Identities = 60/111 (54%), Positives = 81/111 (72%)
Frame = -1 / +3
Query: 1101 WKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPN 922
++ L Y+RPHL+E S I++SN+ F +SP W IHPVYCSNV I N+TI D+P
Sbjct: 27 FRSNKLNYSRPHLVEFEDSEXIVISNLTFLNSPAWGIHPVYCSNVTIHNITIETALDAPL 206
Query: 921 TDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
T+GI PDS SN+CIE+ IS G D+I++KSGWD+YGI +GRP+S I + R+
Sbjct: 207 TNGIVPDSCSNMCIENSRISVGHDAISLKSGWDKYGITFGRPTSDIHISRV 359
Score = 46.9 bits (96), Expect(2) = 2e-045
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -1 / +3
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRN 619
A A GSE SGG+ +V + L+ S GI +T GRGG+IR+
Sbjct: 381 AALAXGSEMSGGISDVHVDQLHXHGSAKGISFRTAPGRGGYIRD 512
>gb|CK122968.1|CK122968 BES1824101i10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I101 5-PRIME, mRNA sequence
Length = 768
Score = 179 bits (385), Expect = 3e-044
Identities = 72/119 (60%), Positives = 84/119 (70%)
Frame = -1 / +3
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G WWD + L YTR +LLEL+ S DII+SNV F D+P WN+
Sbjct: 321 LTDVIISGNNGTINGQGQVWWDKFHAKELDYTRGYLLELLYSRDIIISNVTFVDAPSWNL 500
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYG 814
HP YC+NV I VTILAP SPNTDGIDPDSSS++ IEDCYI +GDD IA+KSGWDEYG
Sbjct: 501 HPTYCTNVTISGVTILAPVHSPNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYG 677
Score = 134 bits (288), Expect = 7e-031
Identities = 69/117 (58%), Positives = 78/117 (66%)
Frame = +2 / -3
Query: 815 PYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGARIVTFLITTLLQ*TGWM 994
PYSSQPL AM+SSP M*QSS+ ESGSIPSV GE GARIVT L+ TL+Q* GW
Sbjct: 676 PYSSQPLFTAMQSSPDTM*QSSILT*DEESGSIPSVFGEWTGARIVTPLMVTLVQ*VGWR 497
Query: 995 FQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHHALP*PPIVPFSPVMTTS 1165
FQ G S K TLE M+S E SS R* V*S +++SHH P P +VP P M TS
Sbjct: 496 FQEGASTKVTLEMMMSRE*RSSSR*PRV*SSSLAWNLSHHTCPCPLMVPLLPEMMTS 326
>gb|BM377171.2|BM377171 EBem05_SQ004_F09_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_F09 5', mRNA sequence
Length = 401
Score = 178 bits (384), Expect = 4e-044
Identities = 72/132 (54%), Positives = 88/132 (66%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G+ WW +K L YTR +L+ELM + + + NV +SP WNI
Sbjct: 5 LTDVVITGNNGTIDGQGATWWSKYKSGKLKYTRGYLIELMHTDGVFICNVTLVNSPAWNI 184
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGI 811
HPVY N+V+ VTILAP SPNTDGI+PDS S + IEDCY+ +GDD +AIKSGWDEYGI
Sbjct: 185 HPVYSRNIVVSGVTILAPVKSPNTDGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGI 364
Query: 810 AYGRPSSGITVR 775
A G PS I+VR
Sbjct: 365 AVGMPSEHISVR 400
Score = 126 bits (269), Expect = 3e-028
Identities = 66/130 (50%), Positives = 77/130 (59%)
Frame = +2 / -3
Query: 776 RTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGARIVT 955
RT + LG P A+PYSSQPLLMA +SSP *QSSM+ ESG +PSVLG+ GAR+VT
Sbjct: 399 RTEMCSLGMPTAMPYSSQPLLMATQSSPETT*QSSMRTWEHESGLMPSVLGDLTGARMVT 220
Query: 956 FLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHHALP*PPI 1135
L T L TGWMF GE TL+ ISS R V ++ HH P P +
Sbjct: 219 PLTTMLRLYTGWMFHAGEFTSVTLQMKTPSVCISSMRYPRVYLSLPDLYLDHHVAPCPSM 40
Query: 1136 VPFSPVMTTS 1165
VP PVMTTS
Sbjct: 39 VPLFPVMTTS 10
Score = 111 bits (237), Expect = 8e-024
Identities = 48/129 (37%), Positives = 78/129 (60%)
Frame = +1 / -2
Query: 778 HGDSRTGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS*DSHV 957
H D G A GD++L+PA LDG +V +VA+LDA + A + ++++RVG + D H
Sbjct: 397 HRDVLAGHADGDAVLVPAALDGHAVVAGDDVAVLDAHLGARVRVDAVRVGRLDGRQDGHP 218
Query: 958 SDHNIAAINRMDVPEWRILKDDIGDNDIRRAHQLKKVRPCVEQXXXLPHIPPRAALTTNS 1137
+ H++AA++R+DVP R+ + D+ D D HQL +V V + L PPR AL +
Sbjct: 217 AHHDVAAVHRVDVPRRRVHERDVADEDAVGVHQLDEVPAGVLELAGLVLGPPRGALPVDG 38
Query: 1138 SILACDDNI 1164
+++ DD++
Sbjct: 37 AVVPRDDDV 11
>gb|BU985178.1|BU985178 HF06F18r HF Hordeum vulgare subsp. vulgare cDNA clone HF06F18
5-PRIME, mRNA sequence
Length = 626
Score = 103 bits (219), Expect(3) = 8e-044
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1 / +3
Query: 930 SPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
+PNTDGIDPDS ++ IE+CYIS GDD+IAIKSGWD+YGIAYGR SS I +R +
Sbjct: 396 APNTDGIDPDSCEDVLIENCYISVGDDAIAIKSGWDQYGIAYGRSSSNILIRNV 557
Score = 84.5 bits (178), Expect(3) = 8e-044
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = -1 / +3
Query: 1176 RGLQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFW 997
+ L+DVV G WW + L TRP L++LM S DI+V+N+ ++SPFW
Sbjct: 147 QNLKDVVITGYNGSINGQGEVWWLKHRRRMLKNTRPPLVQLMWSKDIVVTNITLRNSPFW 326
Query: 996 NIHPVYCSNVVIRNVTILAP 937
+ HP C+NV + NVTIL+P
Sbjct: 327 HFHPYDCTNVTVSNVTILSP 386
Score = 28.6 bits (56), Expect(3) = 8e-044
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 750 AGFAVGSETSGGVENV 703
AG ++GSE SGGV N+
Sbjct: 579 AGISIGSEMSGGVANI 626
>gb|BQ470109.1|BQ470109 HX01M20T HX Hordeum vulgare subsp. vulgare cDNA clone HX01M20
5-PRIME, mRNA sequence
Length = 462
Score = 175 bits (376), Expect = 5e-043
Identities = 67/115 (58%), Positives = 83/115 (72%)
Frame = -1 / +2
Query: 1119 SAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILA 940
+ WW +K L YTR +L+ELM + + +SNV +SP WNIHPVY N+V+ VTILA
Sbjct: 50 ATWWSKYKSGKLKYTRGYLIELMHTDGVFISNVTLVNSPAWNIHPVYSRNIVVSGVTILA 229
Query: 939 PHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVR 775
P SPNTDGI+PDS S + IEDCY+ +GDD +AIKSGWDEYGIA G PS I+ R
Sbjct: 230 PVKSPNTDGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGIAVGMPSEHISER 394
Score = 122 bits (260), Expect(2) = 7e-028
Identities = 64/130 (49%), Positives = 76/130 (58%)
Frame = +2 / -1
Query: 770 IRRTVIPELGRP*AIPYSSQPLLMAMESSPVEM*QSSMQMLLLESGSIPSVLGESCGARI 949
+ R+ + LG P A+PYSSQPLLMA +SSP *QSSM+ ESG +PSVLG+ GAR+
Sbjct: 399 VGRSEMCSLGMPTAMPYSSQPLLMATQSSPETT*QSSMRTWEHESGLMPSVLGDLTGARM 220
Query: 950 VTFLITTLLQ*TGWMFQNGES*KTTLETMISEELISSRR*GLV*SXXXXFHISHHALP*P 1129
VT L T L TGWMF GE TLE ISS R V ++ HH P P
Sbjct: 219 VTPLTTMLRLYTGWMFHAGEFTSVTLEMKTPSVCISSMRYPRVYLSLPDLYLDHHVAPCP 40
Query: 1130 PIVPFSPVMT 1159
+VP PVMT
Sbjct: 39 SMVPLFPVMT 10
Score = 110 bits (234), Expect = 2e-023
Identities = 48/125 (38%), Positives = 76/125 (60%)
Frame = +1 / -3
Query: 784 DSRTGAAIGDSILIPATLDGDGIVTSRNVAILDADVAAGIWINSIRVGGVMWS*DSHVSD 963
D G A GD++L+PA LDG +V +VA+LDA + A + ++++RVG + D H +
Sbjct: 385 DVLAGHADGDAVLVPAALDGHAVVAGDDVAVLDAHLGARVRVDAVRVGRLNGRQDGHPAH 206
Query: 964 HNIAAINRMDVPEWRILKDDIGDNDIRRAHQLKKVRPCVEQXXXLPHIPPRAALTTNSSI 1143
H++AA++R+DVP R+ + D+GD D HQL +V V + L PPR AL + ++
Sbjct: 205 HDVAAVHRVDVPRRRVHERDVGDEDAVGVHQLDEVPAGVLELAGLVLGPPRGALPVDGAV 26
Query: 1144 LACDD 1158
+ DD
Sbjct: 25 VPRDD 11
Score = 22.6 bits (43), Expect(2) = 7e-028
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2 / -3
Query: 716 PPDVSLPTA 742
PPD+SLP+A
Sbjct: 457 PPDISLPSA 431
>gb|CA007562.1|CA007562 HU08F12r HU Hordeum vulgare subsp. vulgare cDNA clone HU08F12
5-PRIME, mRNA sequence
Length = 507
Score = 95.0 bits (201), Expect(2) = 3e-037
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -1 / +1
Query: 918 DGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
DGI+PDS S + IEDCY+ +GDD +AIKSGWDEYGIA G PS I+VRR+T SP
Sbjct: 13 DGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGIAVGMPSEHISVRRLTCVSP 177
Score = 80.8 bits (170), Expect(2) = 3e-037
Identities = 31/94 (32%), Positives = 57/94 (60%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
A A+GSE SGG+ +V AE + + + +KT GRG ++R++ + LD ++
Sbjct: 184 AVIALGSEMSGGIRDVRAEDITAIGTESAVRIKTAVGRGAYVRDVYARRMRLDGMKRVFW 363
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNV 469
+ GD +HPDD Y+++A+P+V+ ++ ++V V
Sbjct: 364 MTGDYKSHPDDGYDKAAVPVVENISYQDVVATGV 465
>gb|BF263300.2|BF263300 HV_CEa0006G04f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006G04f, mRNA sequence
Length = 592
Score = 153 bits (329), Expect = 2e-036
Identities = 64/114 (56%), Positives = 78/114 (68%)
Frame = -1 / +2
Query: 1107 DMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDS 928
D + L YTR LL L S+DII+ N+ F ++P WN+HP YC+NV I VTILAP S
Sbjct: 11 DKYHPKELYYTRGCLL*LQYSTDIIIYNLTFDNTPCWNLHPTYCTNVTISGVTILAPVHS 190
Query: 927 PNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRIT 766
PNTDGIDP+ S ++ I D TGDD IA+KSGWDEYGI + PS I VRR+T
Sbjct: 191 PNTDGIDPNPSCHVMITD*QRLTGDDCIAVKSGWDEYGIRFNMPSQHIVVRRLT 352
>gb|CA022571.1|CA022571 HZ43K15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43K15
5-PRIME, mRNA sequence
Length = 521
Score = 152 bits (327), Expect = 3e-036
Identities = 56/102 (54%), Positives = 76/102 (74%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G WW++W L +TR HL+EL++S+++++SNV ++SPFW +
Sbjct: 215 LNDVVITGSNGTIDGQGRMWWELWWNRTLNHTRGHLIELVNSTNVLISNVTLRNSPFWTV 394
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYI 865
HPVYC NVVI+++TILAP ++PNTDGIDPDSSS +CIEDCYI
Sbjct: 395 HPVYCRNVVIKDLTILAPLNAPNTDGIDPDSSSEVCIEDCYI 520
>gb|CA025783.1|CA025783 HZ53C03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53C03
5-PRIME, mRNA sequence
Length = 604
Score = 149 bits (319), Expect = 4e-035
Identities = 61/106 (57%), Positives = 72/106 (67%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G WWD + L YTR +LLEL+ S DII+SNV F D+P WN+
Sbjct: 286 LTDVIISGNNGTINGQGQVWWDKFHAKELDYTRGYLLELLYSRDIIISNVTFVDAPSWNL 465
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGD 853
HP YC+NV I VTILAP SPNTDGIDPDSSS++ IEDCYI +GD
Sbjct: 466 HPTYCTNVTISGVTILAPVHSPNTDGIDPDSSSHVKIEDCYIVSGD 603
Score = 111 bits (236), Expect = 1e-023
Identities = 59/104 (56%), Positives = 67/104 (64%)
Frame = +2 / -3
Query: 854 SPVEM*QSSMQMLLLESGSIPSVLGESCGARIVTFLITTLLQ*TGWMFQNGES*KTTLET 1033
SP M*QSS+ ESGSIPSV GE GARIVT L+ TL+Q* GW FQ G S K TLE
Sbjct: 602 SPDTM*QSSILT*DEESGSIPSVFGEWTGARIVTPLMVTLVQ*VGWRFQEGASTKVTLEM 423
Query: 1034 MISEELISSRR*GLV*SXXXXFHISHHALP*PPIVPFSPVMTTS 1165
M+S E SS R* V*S +++SHH P P +VP P M TS
Sbjct: 422 MMSRE*RSSSR*PRV*SSSLAWNLSHHTCPCPLMVPLLPEMMTS 291
>gb|CA014967.1|CA014967 HT12O01r HT Hordeum vulgare subsp. vulgare cDNA clone HT12O01
5-PRIME, mRNA sequence
Length = 592
Score = 147 bits (316), Expect = 1e-034
Identities = 54/100 (54%), Positives = 74/100 (74%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DVV G WW++W L +TR HL+EL++S+++++SNV ++SPFW +
Sbjct: 292 LNDVVITGSNGTIDGQGRMWWELWWNRTLNHTRGHLIELVNSTNVLISNVTLRNSPFWTV 471
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDC 871
HPVYC NVVI+++TILAP ++PNTDGIDPDSSS +CIEDC
Sbjct: 472 HPVYCRNVVIKDLTILAPLNAPNTDGIDPDSSSEVCIEDC 591
>gb|BU983168.1|BU983168 HA28M06r HA Hordeum vulgare subsp. vulgare cDNA clone HA28M06
5-PRIME, mRNA sequence
Length = 630
Score = 145 bits (311), Expect = 5e-034
Identities = 57/119 (47%), Positives = 82/119 (68%)
Frame = -1 / +3
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLR 571
AG A+GSE SGG+ V AE L NS GI +KT GRGG++RN+ ++DV++ NV +R
Sbjct: 63 AGIAIGSEMSGGISEVRAEGLRIVNSLHGIRIKTAPGRGGYVRNVYIADVSMHNVSMAIR 242
Query: 570 IVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLIKGIPNSAFSRICLSNVKFT 394
I G+ G HPD Y+++ALPI+ +T++NV G +V AG+++GI FS IC+SNV +
Sbjct: 243 ITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEGDNFSSICISNVSLS 419
>gb|CA014919.1|CA014919 HT12L18r HT Hordeum vulgare subsp. vulgare cDNA clone HT12L18
5-PRIME, mRNA sequence
Length = 655
Score = 143 bits (307), Expect = 2e-033
Identities = 53/98 (54%), Positives = 72/98 (73%)
Frame = -1 / +1
Query: 1113 WWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPH 934
WW+ ++ L Y+RPHL+E S +I++SN+ F +SP W IHPVYCSNV I N+TI
Sbjct: 361 WWNWFRSNKLNYSRPHLVEFEDSEEIVISNLTFLNSPAWGIHPVYCSNVTIHNITIETAL 540
Query: 933 DSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDE 820
D+P T+GI PDS SN+CIE+ IS G D+I++KSGWD+
Sbjct: 541 DAPLTNGIVPDSCSNMCIENSRISVGHDAISLKSGWDK 654
>gb|AV922039.1|AV922039 AV922039 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19h20 3', mRNA sequence
Length = 657
Score = 132 bits (283), Expect = 3e-030
Identities = 52/59 (88%), Positives = 54/59 (91%)
Frame = -1 / -3
Query: 453 IKGIPNSAFSRICLSNVKFTGGAPVRPWKCEAVSGGALDVQPSPCTELTSTSGTSFCTN 277
IKGIPNSAFSRICLSN+K G APVRPWKC+AVSGGALDVQPSPCTELTS SG SFCTN
Sbjct: 655 IKGIPNSAFSRICLSNIKLHGSAPVRPWKCQAVSGGALDVQPSPCTELTSMSGMSFCTN 479
Score = 122 bits (261), Expect = 4e-027
Identities = 50/79 (63%), Positives = 60/79 (75%)
Frame = +2 / +3
Query: 218 VDTEA*QQLRLS*LAKHQSEFVQKLVPDVEVSSVHGDGCTSRAPPLTASHFHGRTGAPPV 397
+ E ++ + L +HQ EFVQKL+PD+ V+SVHGDGCTS APPLTA HFHGRTGA P
Sbjct: 420 ISPEVETEIEVQDLIQHQREFVQKLIPDMLVNSVHGDGCTSSAPPLTAWHFHGRTGALPW 599
Query: 398 NLTFDRQIREKAELGMPLI 454
+L DRQ+RE AE GMPLI
Sbjct: 600 SLMLDRQMRENAEFGMPLI 656
>gb|BG415643.1|BG415643 HVSMEk0007E18f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007E18f, mRNA sequence
Length = 668
Score = 105 bits (223), Expect(2) = 1e-028
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = -1 / +2
Query: 927 PNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRITGSSP 754
PNTDGIDPDSSS++ IEDCYI +GDD IA+KSGWDEYGI + PS I VRR+T SP
Sbjct: 2 PNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGIRFNMPSQHIVVRRLTCISP 175
Score = 42.3 bits (86), Expect(2) = 1e-028
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -1 / +2
Query: 750 AGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDV 601
A A+GSE SGG+++V E N+ + +K+ GRGG + ++ + V
Sbjct: 182 AMIALGSEMSGGIQDVRVEDNIAINTESAVRIKSGVGRGGLLEDVFLPSV 331
>gb|AL506001.1|AL506001 AL506001 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01F20T 5',
mRNA sequence
Length = 279
Score = 114 bits (243), Expect = 1e-024
Identities = 46/67 (68%), Positives = 53/67 (79%)
Frame = -1 / +2
Query: 954 VTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVR 775
VTILAP SPNTDGI+PDS S + IEDCY+ +GDD +AIKSGWDEYGI G PS I+VR
Sbjct: 5 VTILAPVKSPNTDGINPDSCSQVRIEDCYVVSGDDCVAIKSGWDEYGIXVGMPSEHISVR 184
Query: 774 RITGSSP 754
R+T SP
Sbjct: 185 RLTCVSP 205
>gb|BU985537.1|BU985537 HF07O02r HF Hordeum vulgare subsp. vulgare cDNA clone HF07O02
5-PRIME, mRNA sequence
Length = 491
Score = 91.8 bits (194), Expect(2) = 3e-022
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = -1 / +3
Query: 630 FIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNVQGQNVREAGLI 451
FIR+ VSDV ++N+ + GD +HP D ++ SALP++ +T+K++ G N+ AG++
Sbjct: 75 FIRDAIVSDVQMENIHVAIEFTGDWSSHPGDHFDPSALPVISGITLKDMVGTNISVAGVL 254
Query: 450 KGIPNSAFSRICLSNVKFT 394
GI F+ ICLSN+ FT
Sbjct: 255 SGIDGDPFTNICLSNINFT 311
Score = 33.6 bits (67), Expect(2) = 3e-022
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1 / +3
Query: 408 NVKFTGGAPVRPWKCEAVSGGALDVQPSPCTELTSTSGTS 289
N A W C +SG + V P PC++L S S S
Sbjct: 303 NFTIADSAHSASWSCSNISGYSESVFPEPCSDLHSQSSNS 422
>gb|BU979456.1|BU979456 HA16D15r HA Hordeum vulgare subsp. vulgare cDNA clone HA16D15
5-PRIME, mRNA sequence
Length = 535
Score = 105 bits (225), Expect = 3e-022
Identities = 44/84 (52%), Positives = 52/84 (61%)
Frame = -1 / +1
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G WWD + L YTR +LLEL+ S DII+SNV F D+P WN+
Sbjct: 283 LTDVIISGNNGTINGQGQVWWDKFHAKELDYTRGYLLELLYSRDIIISNVTFVDAPSWNL 462
Query: 990 HPVYCSNVVIRNVTILAPHDSPNT 919
HP YC+NV I VTILAP SPNT
Sbjct: 463 HPTYCTNVTISGVTILAPVHSPNT 534
>gb|BI954836.1|BI954836 HVSMEm0019P22f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0019P22f, mRNA sequence
Length = 647
Score = 102 bits (217), Expect = 4e-021
Identities = 44/104 (42%), Positives = 61/104 (58%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ G WWD + L YT +L +L+ DII+SN+ +++P WN+
Sbjct: 134 LTDVIISGNNGGGDGHGQVWWDKFHPKELDYTLGYLHKLLY*RDIIMSNITIRNTPSWNL 313
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYIST 859
HP C+NV I VTILAP P+ DGIDP S+S + I+D YI +
Sbjct: 314 HPT*CTNVTINGVTILAPGHLPHADGIDPYSASRVNIDDWYIGS 445
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 623,809,267
Number of Sequences: 312970
Number of extensions: 13143042
Number of successful extensions: 150234
Number of sequences better than 1.0e-020: 43
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14167070691
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)