TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.2
(562 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV064104.1|CV064104 BNEL98b1 Barley EST endosperm librar... 193 5e-049
gb|BU995027.1|BU995027 HM08P11r HM Hordeum vulgare subsp. v... 114 9e-036
gb|CB881163.1|CB881163 HM08P11w HM Hordeum vulgare subsp. v... 107 2e-035
gb|CA015797.1|CA015797 HV11O17u HV Hordeum vulgare subsp. v... 148 3e-035
gb|BU995276.1|BU995276 HM09L23r HM Hordeum vulgare subsp. v... 114 3e-035
gb|BU974893.1|BU974893 HB29G22r BC Hordeum vulgare subsp. v... 140 6e-033
gb|CB881416.1|CB881416 HM09L23w HM Hordeum vulgare subsp. v... 95 1e-031
gb|CA019419.1|CA019419 HV11O17r HV Hordeum vulgare subsp. v... 113 9e-025
gb|CA014369.1|CA014369 HT11C14r HT Hordeum vulgare subsp. v... 101 3e-021
>gb|CV064104.1|CV064104 BNEL98b1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98b1 5' similar to putative
sterol 4-alpha-methyl-oxidase, mRNA sequence
Length = 640
Score = 193 bits (417), Expect = 5e-049
Identities = 75/87 (86%), Positives = 75/87 (86%)
Frame = -3 / -2
Query: 542 LGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHH 363
LGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGSDFHDYHH
Sbjct: 636 LGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHH 457
Query: 362 RVLYTKSGNYASTFVYMDWLFRTDNGY 282
RVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 456 RVLYTKSGNYASTFVYMDWLFGTDKGY 376
Score = 142 bits (304), Expect = 2e-033
Identities = 66/84 (78%), Positives = 67/84 (79%)
Frame = +1 / +2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV NNQSM*T VEA*FPD V STR*W*SWKSEPPYSGRKFDGL GK* PL*ASTV TL
Sbjct: 386 SVPNNQSM*TKVEA*FPDLV*STR*W*SWKSEPPYSGRKFDGLQGK*YPL*ASTVSNTLK 565
Query: 472 TXXSHXVNR*GPVXAXXXXVANPR 543
T SH VN+*GPV A VANPR
Sbjct: 566 TIHSHRVNK*GPVRAGPTTVANPR 637
Score = 125 bits (268), Expect = 2e-028
Identities = 53/96 (55%), Positives = 70/96 (72%)
Frame = +3 / +1
Query: 258 PQWSLCLAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRATVQWKEI*WAPWKVIA 437
P CLAIT++ +QPVHVNK RG+VP*L V+H++MVVMEVRA++QW+E+*WAP +VI+
Sbjct: 352 PFHGFCLAITLICAKQPVHVNKSRGVVP*LGVEHTMMVVMEVRASIQWQEV*WAPREVIS 531
Query: 438 AVSLXRXXYPXXHXQPXXEQMRXSXSXXXXCGESQE 545
VS R +P H QP EQ+R S S G+SQ+
Sbjct: 532 TVSFHRL*HPQNHPQP*GEQVRASQSRANNRGKSQD 639
Score = 114 bits (243), Expect = 5e-025
Identities = 52/92 (56%), Positives = 55/92 (59%)
Frame = -1 / -3
Query: 544 SWDSPXXXXLLXLXLICSXCGCXWXXGYXXRXRLTAAITFHGAHQISFHCTVARTSMTTI 365
SWD P LL L L CS GC W G R +LT IT GAHQ S HC A TSMTTI
Sbjct: 638 SWDLPRLLALL*LALTCSPYGCGWF*GC*RRWKLTVDITSLGAHQTSCHCMEALTSMTTI 459
Query: 364 TECCTQSQGTMPRHLFTWTGCSGRTMVIARQR 269
C T SQGT P LFTWTGC + VIARQ+
Sbjct: 458 IVCSTPSQGTTPLLLFTWTGCLAQIRVIARQK 363
Score = 111 bits (237), Expect = 3e-024
Identities = 52/91 (57%), Positives = 54/91 (59%)
Frame = +2 / +3
Query: 272 LPCDNHCPSGTTSPCKQMSRHSSLTLCTALGDGSHGSPSHRTVEGNLMGSMESDSRCEPX 451
L CDN TTSPCKQ R SSLT C A DGSHGS S TV G+LMGS SD CE
Sbjct: 366 LSCDNPYLCQTTSPCKQK*RRSSLTWCRAHDDGSHGSQSLHTVAGSLMGSKGSDIHCELP 545
Query: 452 PSXIPXXPXTATX*TDEXQXEQXXXXWRIPG 544
PS P P TA *T E Q EQ W+IPG
Sbjct: 546 PSLTPSKPSTAIG*TSEGQSEQGQQPWQIPG 638
Score = 104 bits (222), Expect = 4e-022
Identities = 52/91 (57%), Positives = 58/91 (63%)
Frame = -2 / -1
Query: 543 PGIRHXXXXCSXWXSSVHXVAVXGXXGXXDGXGSQRLSLSMEPIKFPSTVRWLGLP*LPS 364
PGI H CS W S VH +AV G G DG SQ +SL +EPIK P+TV L LP*LPS
Sbjct: 637 PGICHGCWPCSDWPSLVHPMAVDGFEGVRDGGSSQWISLPLEPIKLPATVWRL*LP*LPS 458
Query: 363 PSAVHKVRELCLDICLHGLVVPDGQWLSQGK 271
A+H+VREL L CLHGLVV LSQ K
Sbjct: 457 SCALHQVRELRLYFCLHGLVVWHR*GLSQDK 365
>gb|BU995027.1|BU995027 HM08P11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08P11
5-PRIME, mRNA sequence
Length = 621
Score = 114 bits (243), Expect(2) = 9e-036
Identities = 46/62 (74%), Positives = 47/62 (75%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGS
Sbjct: 346 LFLGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSSDFHD 525
Query: 368 HH 363
+H
Sbjct: 526 YH 531
Score = 92.7 bits (196), Expect(2) = 6e-032
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / +1
Query: 392 GGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
G SDFHDYHHRVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 505 GSSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKGY 615
Score = 86.8 bits (183), Expect(2) = 2e-030
Identities = 39/53 (73%), Positives = 40/53 (75%)
Frame = +1 / -2
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRN 546
PPYSGRKFDGL GK* PL*ASTV TL T SH VN+*GPV A VANPRN
Sbjct: 506 PPYSGRKFDGLQGK*YPL*ASTVSNTLKTIHSHRVNK*GPVRAGPTTVANPRN 348
Score = 65.2 bits (136), Expect(2) = 2e-030
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +3 / -1
Query: 276 LAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
LAIT++ +QPVHVNK RG+VP*L V+H++MVVMEVRA
Sbjct: 621 LAITLICAKQPVHVNKSRGVVP*LGVEHTMMVVMEVRA 508
Score = 64.3 bits (134), Expect(2) = 6e-032
Identities = 28/51 (54%), Positives = 32/51 (62%)
Frame = -2 / +3
Query: 546 VPGIRHXXXXCSXWXSSVHXVAVXGXXGXXDGXGSQRLSLSMEPIKFPSTV 394
VPGI H CS W S VH +AV G G DG SQ +SL +EPIK P+TV
Sbjct: 348 VPGICHGCWPCSDWPSLVHPMAVDGFEGVRDGGSSQWISLPLEPIKLPATV 500
Score = 63.8 bits (133), Expect(2) = 6e-023
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +3 / -1
Query: 387 ATVQWKEI*WAPWKVIAAVSLXRXXYPXXHXQPXXEQMRXSXSXXXXCGESQEQ 548
A++QW+E+*WAP +VI+ VS R +P H QP EQ+R S S G+SQEQ
Sbjct: 507 ASIQWQEV*WAPREVISTVSFHRL*HPQNHPQP*GEQVRASQSRANNRGKSQEQ 346
Score = 62.9 bits (131), Expect(2) = 6e-023
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPP 393
SV NNQSM*T VEA*FPD V STR*W*SWKSE P
Sbjct: 605 SVPNNQSM*TKVEA*FPDLV*STR*W*SWKSELP 504
Score = 55.6 bits (115), Expect(2) = 9e-036
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = -1 / +2
Query: 388 ARTSMTTITECCTQSQGTMPRHLFTWTGCSGRTMVIA 278
A TSMTTI C T SQGT P LFTWTGC + VIA
Sbjct: 509 ALTSMTTIIVCSTPSQGTTPLLLFTWTGCLAQIRVIA 619
>gb|CB881163.1|CB881163 HM08P11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08P11
3-PRIME, mRNA sequence
Length = 604
Score = 107 bits (229), Expect(2) = 2e-035
Identities = 43/59 (72%), Positives = 44/59 (74%)
Frame = -3 / -1
Query: 539 GFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHH 363
GFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGS +H
Sbjct: 604 GFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSSDFHDYH 428
Score = 92.7 bits (196), Expect(2) = 1e-029
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / -1
Query: 392 GGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
G SDFHDYHHRVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 454 GSSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKGY 344
Score = 78.5 bits (165), Expect(2) = 2e-029
Identities = 36/50 (72%), Positives = 37/50 (74%)
Frame = +1 / +3
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVAN 537
PPYSGRKFDGL GK* PL*ASTV TL T SH VN+*GPV A VAN
Sbjct: 453 PPYSGRKFDGLQGK*YPL*ASTVSNTLKTIHSHRVNK*GPVRAGPTTVAN 602
Score = 70.3 bits (147), Expect(2) = 2e-029
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3 / +2
Query: 258 PQWSLCLAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
P CLAIT++ +QPVHVNK RG+VP*L V+H++MVVMEVRA
Sbjct: 320 PFHGFCLAITLICAKQPVHVNKSRGVVP*LGVEHTMMVVMEVRA 451
Score = 62.9 bits (131), Expect(2) = 6e-021
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1 / +3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPP 393
SV NNQSM*T VEA*FPD V STR*W*SWKSE P
Sbjct: 354 SVPNNQSM*TKVEA*FPDLV*STR*W*SWKSELP 455
Score = 61.1 bits (127), Expect(2) = 2e-035
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = -1 / -2
Query: 388 ARTSMTTITECCTQSQGTMPRHLFTWTGCSGRTMVIARQR 269
A TSMTTI C T SQGT P LFTWTGC + VIARQ+
Sbjct: 450 ALTSMTTIIVCSTPSQGTTPLLLFTWTGCLAQIRVIARQK 331
Score = 57.0 bits (118), Expect(2) = 6e-021
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +3 / +2
Query: 387 ATVQWKEI*WAPWKVIAAVSLXRXXYPXXHXQPXXEQMRXSXSXXXXCGES 539
A++QW+E+*WAP +VI+ VS R +P H QP EQ+R S S G+S
Sbjct: 452 ASIQWQEV*WAPREVISTVSFHRL*HPQNHPQP*GEQVRASQSRANNRGKS 604
Score = 56.5 bits (117), Expect(2) = 1e-029
Identities = 25/48 (52%), Positives = 29/48 (60%)
Frame = -2 / -3
Query: 537 IRHXXXXCSXWXSSVHXVAVXGXXGXXDGXGSQRLSLSMEPIKFPSTV 394
I H CS W S VH +AV G G DG SQ +SL +EPIK P+TV
Sbjct: 602 ICHGCWPCSDWPSLVHPMAVDGFEGVRDGGSSQWISLPLEPIKLPATV 459
>gb|CA015797.1|CA015797 HV11O17u HV Hordeum vulgare subsp. vulgare cDNA clone HV11O17
3-PRIME, mRNA sequence
Length = 536
Score = 148 bits (317), Expect = 3e-035
Identities = 54/56 (96%), Positives = 54/56 (96%)
Frame = -3 / -2
Query: 449 EAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
EAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 535 EAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKGY 368
Score = 102 bits (218), Expect = 1e-021
Identities = 47/53 (88%), Positives = 47/53 (88%)
Frame = +1 / +3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*AS 450
SV NNQSM*T VEA*FPD V STR*W*SWKSEPPYSGRKFDGL GK* PL*AS
Sbjct: 378 SVPNNQSM*TKVEA*FPDLV*STR*W*SWKSEPPYSGRKFDGLQGK*YPL*AS 536
Score = 100 bits (214), Expect = 5e-021
Identities = 40/63 (63%), Positives = 53/63 (84%)
Frame = +3 / +2
Query: 258 PQWSLCLAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRATVQWKEI*WAPWKVIA 437
P CLAIT++ +QPVHVNK RG+VP*L V+H++MVVMEVRA++QW+E+*WAP +VI+
Sbjct: 344 PFHGFCLAITLICAKQPVHVNKSRGVVP*LGVEHTMMVVMEVRASIQWQEV*WAPREVIS 523
Query: 438 AVS 446
VS
Sbjct: 524 TVS 532
>gb|BU995276.1|BU995276 HM09L23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09L23
5-PRIME, mRNA sequence
Length = 591
Score = 114 bits (243), Expect(2) = 3e-035
Identities = 46/62 (74%), Positives = 47/62 (75%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGS
Sbjct: 319 LFLGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSSDFHD 498
Query: 368 HH 363
+H
Sbjct: 499 YH 504
Score = 92.7 bits (196), Expect(2) = 6e-032
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / +1
Query: 392 GGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
G SDFHDYHHRVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 478 GSSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKGY 588
Score = 86.8 bits (183), Expect(2) = 6e-030
Identities = 39/53 (73%), Positives = 40/53 (75%)
Frame = +1 / -2
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRN 546
PPYSGRKFDGL GK* PL*ASTV TL T SH VN+*GPV A VANPRN
Sbjct: 479 PPYSGRKFDGLQGK*YPL*ASTVSNTLKTIHSHRVNK*GPVRAGPTTVANPRN 321
Score = 64.3 bits (134), Expect(2) = 6e-032
Identities = 28/51 (54%), Positives = 32/51 (62%)
Frame = -2 / +3
Query: 546 VPGIRHXXXXCSXWXSSVHXVAVXGXXGXXDGXGSQRLSLSMEPIKFPSTV 394
VPGI H CS W S VH +AV G G DG SQ +SL +EPIK P+TV
Sbjct: 321 VPGICHGCWPCSDWPSLVHPMAVDGFEGVRDGGSSQWISLPLEPIKLPATV 473
Score = 63.8 bits (133), Expect(2) = 6e-023
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +3 / -1
Query: 387 ATVQWKEI*WAPWKVIAAVSLXRXXYPXXHXQPXXEQMRXSXSXXXXCGESQEQ 548
A++QW+E+*WAP +VI+ VS R +P H QP EQ+R S S G+SQEQ
Sbjct: 480 ASIQWQEV*WAPREVISTVSFHRL*HPQNHPQP*GEQVRASQSRANNRGKSQEQ 319
Score = 63.4 bits (132), Expect(2) = 6e-030
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +3 / -1
Query: 279 AITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
AIT++ +QPVHVNK RG+VP*L V+H++MVVMEVRA
Sbjct: 591 AITLICAKQPVHVNKSRGVVP*LGVEHTMMVVMEVRA 481
Score = 62.9 bits (131), Expect(2) = 6e-023
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPP 393
SV NNQSM*T VEA*FPD V STR*W*SWKSE P
Sbjct: 578 SVPNNQSM*TKVEA*FPDLV*STR*W*SWKSELP 477
Score = 53.8 bits (111), Expect(2) = 3e-035
Identities = 23/36 (63%), Positives = 24/36 (66%)
Frame = -1 / +2
Query: 388 ARTSMTTITECCTQSQGTMPRHLFTWTGCSGRTMVI 281
A TSMTTI C T SQGT P LFTWTGC + VI
Sbjct: 482 ALTSMTTIIVCSTPSQGTTPLLLFTWTGCLAQIRVI 589
>gb|BU974893.1|BU974893 HB29G22r BC Hordeum vulgare subsp. vulgare cDNA clone HB29G22
5-PRIME, mRNA sequence
Length = 499
Score = 140 bits (300), Expect = 6e-033
Identities = 51/53 (96%), Positives = 51/53 (96%)
Frame = -3 / +2
Query: 440 SGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
SGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 2 SGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKGY 160
>gb|CB881416.1|CB881416 HM09L23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09L23
3-PRIME, mRNA sequence
Length = 576
Score = 94.5 bits (200), Expect(2) = 1e-031
Identities = 37/49 (75%), Positives = 38/49 (77%)
Frame = -3 / -1
Query: 509 TGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHH 363
TGPHLFT WL MV V TVEAHSGYHFPWSPSNFLPLYGGS +H
Sbjct: 573 TGPHLFTLWLWMV*GVLETVEAHSGYHFPWSPSNFLPLYGGSSDFHDYH 427
Score = 92.7 bits (196), Expect(2) = 1e-027
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / -1
Query: 392 GGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
G SDFHDYHHRVLYTKSGNYASTFVYMDWLF TD GY
Sbjct: 453 GSSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKGY 343
Score = 70.3 bits (147), Expect(2) = 1e-026
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3 / +1
Query: 258 PQWSLCLAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
P CLAIT++ +QPVHVNK RG+VP*L V+H++MVVMEVRA
Sbjct: 319 PFHGFCLAITLICAKQPVHVNKSRGVVP*LGVEHTMMVVMEVRA 450
Score = 68.9 bits (144), Expect(2) = 1e-026
Identities = 31/41 (75%), Positives = 32/41 (78%)
Frame = +1 / +2
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPV 510
PPYSGRKFDGL GK* PL*ASTV T T SH VN+*GPV
Sbjct: 452 PPYSGRKFDGLQGK*YPL*ASTVSNTPQTIHSHRVNK*GPV 574
Score = 61.1 bits (127), Expect(2) = 1e-031
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = -1 / -2
Query: 388 ARTSMTTITECCTQSQGTMPRHLFTWTGCSGRTMVIARQR 269
A TSMTTI C T SQGT P LFTWTGC + VIARQ+
Sbjct: 449 ALTSMTTIIVCSTPSQGTTPLLLFTWTGCLAQIRVIARQK 330
Score = 50.1 bits (103), Expect(2) = 1e-027
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = -2 / -3
Query: 507 WXSSVHXVAVXGXXGXXDGXGSQRLSLSMEPIKFPSTV 394
W S VH +AV G G DG SQ +SL +EPIK P+TV
Sbjct: 571 WPSLVHPMAVDGLRGVRDGGSSQWISLPLEPIKLPATV 458
>gb|CA019419.1|CA019419 HV11O17r HV Hordeum vulgare subsp. vulgare cDNA clone HV11O17
5-PRIME, mRNA sequence
Length = 692
Score = 113 bits (241), Expect = 9e-025
Identities = 45/55 (81%), Positives = 45/55 (81%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGS 384
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGS
Sbjct: 527 LFLGFATVVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGS 691
>gb|CA014369.1|CA014369 HT11C14r HT Hordeum vulgare subsp. vulgare cDNA clone HT11C14
5-PRIME, mRNA sequence
Length = 644
Score = 101 bits (215), Expect = 3e-021
Identities = 36/89 (40%), Positives = 53/89 (59%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG + A H+ T WL ++ R ++ HSG+ FP+S + ++P YGG+++HDY
Sbjct: 355 LILGIPSFAGPAIAPGHMITFWLWIILRQMEAIDTHSGFDFPFSLTKYIPFYGGAEYHDY 534
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+L+ TD GY
Sbjct: 535 HHYVGGQSQSNFASVFTYCDYLYGTDRGY 621
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 220,617,303
Number of Sequences: 312970
Number of extensions: 3066880
Number of successful extensions: 49584
Number of sequences better than 1.0e-020: 9
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5811236344
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)