TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 191 8e-051
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 191 8e-051
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 191 7e-049
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 191 7e-049
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 191 3e-048
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 191 3e-048
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 191 3e-048
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 191 3e-048
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 189 1e-047
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 179 4e-047
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 176 3e-046
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 183 1e-045
gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. v... 176 1e-043
gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, n... 176 1e-043
gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, n... 172 2e-042
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 150 1e-038
gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke devel... 149 1e-036
gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. v... 147 8e-035
gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. v... 138 3e-032
gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke devel... 131 4e-030
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 118 2e-029
gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. v... 129 2e-029
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 118 4e-029
gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA li... 122 2e-028
gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA li... 122 2e-028
gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA li... 122 2e-028
gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA li... 122 1e-027
gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA li... 122 2e-027
gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. v... 122 2e-027
gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke devel... 111 2e-027
gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA li... 111 3e-027
gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA li... 111 3e-027
gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA li... 113 4e-027
gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA li... 119 1e-026
gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA li... 119 1e-026
gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA li... 104 4e-026
gb|AV930310.1|AV930310 AV930310 K. Sato unpublished cDNA li... 114 5e-025
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 103 3e-024
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 103 3e-024
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 103 3e-024
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 103 3e-024
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 103 3e-024
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 103 3e-024
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 103 3e-024
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 103 3e-024
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 103 3e-024
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 103 3e-024
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 103 3e-024
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 103 3e-024
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 103 3e-024
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 103 3e-024
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 103 3e-024
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 103 3e-024
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 103 3e-024
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 103 3e-024
gb|CA008041.1|CA008041 HU09L19r HU Hordeum vulgare subsp. v... 103 5e-024
gb|BI950113.1|BI950113 HVSMEl0018L24f Hordeum vulgare spike... 101 6e-024
gb|BI951089.1|BI951089 HVSMEl0024F18f Hordeum vulgare spike... 103 1e-023
gb|BF623113.2|BF623113 HVSMEa0014H10f Hordeum vulgare seedl... 108 4e-023
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 100 4e-023
gb|BU983139.1|BU983139 HA28K22r HA Hordeum vulgare subsp. v... 97 1e-022
gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA li... 95 2e-022
gb|CA004328.1|CA004328 HS17E06r HS Hordeum vulgare subsp. v... 103 1e-021
gb|CA022247.1|CA022247 HZ42J06r HZ Hordeum vulgare subsp. v... 102 3e-021
gb|CA018044.1|CA018044 HV07D21r HV Hordeum vulgare subsp. v... 96 3e-021
gb|CA020259.1|CA020259 HV14M16r HV Hordeum vulgare subsp. v... 97 6e-021
gb|BM370011.2|BM370011 EBro08_SQ002_K19_R root, 3 week, dro... 97 6e-021
gb|BF259925.2|BF259925 HVSMEf0020K05f Hordeum vulgare seedl... 97 6e-021
gb|BQ766496.1|BQ766496 EBro08_SQ006_B12_R root, 3 week, dro... 97 6e-021
gb|BQ467967.1|BQ467967 HR01H24r HR Hordeum vulgare subsp. v... 97 6e-021
gb|AJ463491.1|AJ463491 AJ463491 S00002 Hordeum vulgare subs... 97 6e-021
gb|AJ463490.1|AJ463490 AJ463490 S00002 Hordeum vulgare subs... 97 6e-021
>gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K04
5-PRIME, mRNA sequence
Length = 557
Score = 191 bits (412), Expect(2) = 8e-051
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +1
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 226 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 405
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 406 NIYLPVALRLLITCGKHPPNGFQC 477
Score = 101 bits (216), Expect(3) = 2e-025
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -1
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 380 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 228
Score = 100 bits (212), Expect(3) = 5e-024
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -3
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 390 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 247
Score = 29.0 bits (57), Expect(2) = 8e-051
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +3
Query: 9 SAITTTVRATLRPPDASAITTLRA 80
+A + VRAT+RP D S ++LRA
Sbjct: 60 NATASAVRATIRPTDTSIHSSLRA 131
Score = 27.6 bits (54), Expect(3) = 2e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 473 WKPLGGCLPQV 441
Score = 24.9 bits (48), Expect(3) = 5e-024
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 478 GTGSRWAGACRR**A 434
Score = 24.0 bits (46), Expect(3) = 2e-025
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 78 HVGW*WPRRRGDVGWHVRWW*W 13
HVG R R DV WHVR W
Sbjct: 129 HVGRSVWRCRWDVWWHVRRRQW 64
Score = 23.5 bits (45), Expect(3) = 5e-024
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 79 ARRVVMAEASGGRRVARTVVVMA 11
ARR E S GR VART +A
Sbjct: 130 ARREECMEVSVGRMVARTAEAVA 62
>gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
5-PRIME, mRNA sequence
Length = 552
Score = 191 bits (412), Expect(2) = 8e-051
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +1
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 277 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 456
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 457 NIYLPVALRLLITCGKHPPNGFQC 528
Score = 101 bits (216), Expect(3) = 2e-025
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 431 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 279
Score = 100 bits (212), Expect(3) = 5e-024
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 441 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 298
Score = 29.0 bits (57), Expect(2) = 8e-051
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +3
Query: 9 SAITTTVRATLRPPDASAITTLRA 80
+A + VRAT+RP D S ++LRA
Sbjct: 111 NATASAVRATIRPTDTSIHSSLRA 182
Score = 27.6 bits (54), Expect(3) = 2e-025
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -2
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 524 WKPLGGCLPQV 492
Score = 24.9 bits (48), Expect(3) = 5e-024
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 529 GTGSRWAGACRR**A 485
Score = 24.0 bits (46), Expect(3) = 2e-025
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -1
Query: 78 HVGW*WPRRRGDVGWHVRWW*W 13
HVG R R DV WHVR W
Sbjct: 180 HVGRSVWRCRWDVWWHVRRRQW 115
Score = 23.5 bits (45), Expect(3) = 5e-024
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 79 ARRVVMAEASGGRRVARTVVVMA 11
ARR E S GR VART +A
Sbjct: 181 ARREECMEVSVGRMVARTAEAVA 113
>gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D113 5-PRIME, mRNA sequence
Length = 585
Score = 191 bits (412), Expect(2) = 7e-049
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +2
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 143 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 322
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 323 NIYLPVALRLLITCGKHPPNGFQC 394
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -1
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 297 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 145
Score = 100 bits (212), Expect(2) = 3e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -3
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 307 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 164
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 390 WKPLGGCLPQV 358
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 395 GTGSRWAGACRR**A 351
Score = 22.6 bits (43), Expect(2) = 7e-049
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 33 ATLRPPDASAITTLRA 80
AT+RP D S ++LRA
Sbjct: 1 ATIRPTDTSIHSSLRA 48
>gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A02
5-PRIME, mRNA sequence
Length = 563
Score = 191 bits (412), Expect(2) = 7e-049
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +2
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 152 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 331
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 332 NIYLPVALRLLITCGKHPPNGFQC 403
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -3
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 306 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 154
Score = 100 bits (212), Expect(2) = 3e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -2
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 316 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 173
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 399 WKPLGGCLPQV 367
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -1
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 404 GTGSRWAGACRR**A 360
Score = 22.6 bits (43), Expect(2) = 7e-049
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 33 ATLRPPDASAITTLRA 80
AT+RP D S ++LRA
Sbjct: 10 ATIRPTDTSIHSSLRA 57
>gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. vulgare cDNA clone HA02A21
3-PRIME, mRNA sequence
Length = 570
Score = 191 bits (412), Expect = 3e-048
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / -1
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 519 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 340
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 339 NIYLPVALRLLITCGKHPPNGFQC 268
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / +2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 365 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 517
Score = 100 bits (212), Expect(2) = 3e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / +1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 355 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 498
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / +2
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 272 WKPLGGCLPQV 304
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 267 GTGSRWAGACRR**A 311
>gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N09 5', mRNA sequence
Length = 606
Score = 191 bits (412), Expect = 3e-048
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +2
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 86 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 265
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 266 NIYLPVALRLLITCGKHPPNGFQC 337
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -1
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 240 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 88
Score = 100 bits (212), Expect(2) = 3e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -3
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 250 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 107
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 333 WKPLGGCLPQV 301
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 338 GTGSRWAGACRR**A 294
>gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L21
5-PRIME, mRNA sequence
Length = 495
Score = 191 bits (412), Expect = 3e-048
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +2
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 86 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 265
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 266 NIYLPVALRLLITCGKHPPNGFQC 337
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -1
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 240 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 88
Score = 100 bits (212), Expect(2) = 3e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -3
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 250 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 107
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 333 WKPLGGCLPQV 301
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 338 GTGSRWAGACRR**A 294
>gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42K16
5-PRIME, mRNA sequence
Length = 640
Score = 191 bits (412), Expect = 3e-048
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +1 / +2
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 308 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 487
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 488 NIYLPVALRLLITCGKHPPNGFQC 559
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 462 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 310
Score = 100 bits (212), Expect(2) = 3e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 472 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 329
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -2
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 555 WKPLGGCLPQV 523
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 560 GTGSRWAGACRR**A 516
>gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_M19 5', mRNA sequence
Length = 548
Score = 189 bits (408), Expect = 1e-047
Identities = 74/84 (88%), Positives = 80/84 (95%)
Frame = +1 / +3
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQG ADLDAALCLCTTIRAR+LNI
Sbjct: 111 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGAADLDAALCLCTTIRARVLNI 290
Query: 292 NIYLPIALNLLITCGKHAPSGFQC 363
NIYLP+AL LLITCGKH P+GFQC
Sbjct: 291 NIYLPVALRLLITCGKHPPNGFQC 362
Score = 99.6 bits (211), Expect(2) = 6e-023
Identities = 44/51 (86%), Positives = 44/51 (86%)
Frame = -1 / -2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSA PCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 265 VVQRHSAASRSAAPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 113
Score = 96.4 bits (204), Expect(2) = 3e-021
Identities = 41/48 (85%), Positives = 41/48 (85%)
Frame = -3 / -1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVR PLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 275 RPDGGAEAQRRVQVRRPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 132
Score = 27.6 bits (54), Expect(2) = 6e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -2
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 358 WKPLGGCLPQV 326
Score = 24.9 bits (48), Expect(2) = 3e-021
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 364 GTGSPTARACRR**A 320
GTGS A ACRR**A
Sbjct: 363 GTGSRWAGACRR**A 319
>gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G24
5-PRIME, mRNA sequence
Length = 554
Score = 179 bits (385), Expect(2) = 4e-047
Identities = 71/79 (89%), Positives = 76/79 (96%)
Frame = +1 / +3
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 318 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 497
Query: 292 NIYLPIALNLLITCGKHAP 348
NIYLP+AL LLITCGKH P
Sbjct: 498 NIYLPVALRLLITCGKHPP 554
Score = 101 bits (216), Expect(2) = 1e-022
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 472 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 320
Score = 100 bits (212), Expect(2) = 7e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 482 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 339
Score = 29.0 bits (57), Expect(2) = 4e-047
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 9 SAITTTVRATLRPPDASAITTLRA 80
+A + VRAT+RP D S ++LRA
Sbjct: 152 NATASAVRATIRPTDTSIHSSLRA 223
Score = 24.0 bits (46), Expect(2) = 1e-022
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -1
Query: 78 HVGW*WPRRRGDVGWHVRWW*W 13
HVG R R DV WHVR W
Sbjct: 221 HVGRSVWRCRWDVWWHVRRRQW 156
Score = 23.5 bits (45), Expect(2) = 7e-022
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 79 ARRVVMAEASGGRRVARTVVVMA 11
ARR E S GR VART +A
Sbjct: 222 ARREECMEVSVGRMVARTAEAVA 154
>gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01V 5',
mRNA sequence
Length = 657
Score = 176 bits (379), Expect(2) = 3e-046
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = +1 / +3
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 423 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 602
Query: 292 NIYLPIALNLLITCGKH 342
NIYLP+AL LLITCGKH
Sbjct: 603 NIYLPVALRLLITCGKH 653
Score = 101 bits (216), Expect(2) = 1e-022
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -3
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 577 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 425
Score = 100 bits (212), Expect(2) = 7e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -2
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 587 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 444
Score = 29.0 bits (57), Expect(2) = 3e-046
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 9 SAITTTVRATLRPPDASAITTLRA 80
+A + VRAT+RP D S ++LRA
Sbjct: 257 NATASAVRATIRPTDTSIHSSLRA 328
Score = 24.0 bits (46), Expect(2) = 1e-022
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -2
Query: 78 HVGW*WPRRRGDVGWHVRWW*W 13
HVG R R DV WHVR W
Sbjct: 326 HVGRSVWRCRWDVWWHVRRRQW 261
Score = 23.5 bits (45), Expect(2) = 7e-022
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2 / -1
Query: 79 ARRVVMAEASGGRRVARTVVVMA 11
ARR E S GR VART +A
Sbjct: 327 ARREECMEVSVGRMVARTAEAVA 259
>gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E06 5', mRNA sequence
Length = 422
Score = 183 bits (394), Expect = 1e-045
Identities = 72/83 (86%), Positives = 79/83 (95%)
Frame = +1 / +3
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSG +HLVIG+EARSKCCPLVQGVADLDAALCLCTT+RAR+LNI
Sbjct: 90 KTCPIDALKLNACVDVLSGRVHLVIGREARSKCCPLVQGVADLDAALCLCTTMRARVLNI 269
Query: 292 NIYLPIALNLLITCGKHAPSGFQ 360
NIYLP+AL LLITCGKH P+GFQ
Sbjct: 270 NIYLPVALRLLITCGKHPPNGFQ 338
Score = 99.6 bits (211), Expect(2) = 3e-022
Identities = 44/51 (86%), Positives = 44/51 (86%)
Frame = -1 / -2
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR PLSTSTHAFSFS SIGHV
Sbjct: 244 VVQRHSAASRSATPCTSGQHLLRASRPITRCTRPLSTSTHAFSFSASIGHV 92
Score = 25.4 bits (49), Expect(2) = 3e-022
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1 / -2
Query: 359 WKPDGACLPQV 327
W P G CLPQV
Sbjct: 337 WNPLGGCLPQV 305
>gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. vulgare cDNA clone HF02B20
5-PRIME, mRNA sequence
Length = 517
Score = 176 bits (379), Expect = 1e-043
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = +1 / +2
Query: 133 LKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIA 312
LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+A
Sbjct: 11 LKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVA 190
Query: 313 LNLLITCGKHAPSGFQC 363
L LLITCGKH P+GFQC
Sbjct: 191 LRLLITCGKHPPNGFQC 241
Score = 100 bits (212), Expect(2) = 4e-023
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 154 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 11
Score = 27.6 bits (54), Expect(2) = 4e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -2
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 237 WKPLGGCLPQV 205
>gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_A01 5', mRNA sequence
Length = 411
Score = 176 bits (379), Expect = 1e-043
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = +1 / +2
Query: 133 LKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIA 312
LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+A
Sbjct: 5 LKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVA 184
Query: 313 LNLLITCGKHAPSGFQC 363
L LLITCGKH P+GFQC
Sbjct: 185 LRLLITCGKHPPNGFQC 235
Score = 100 bits (212), Expect(2) = 4e-023
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -3
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 148 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 5
Score = 27.6 bits (54), Expect(2) = 4e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 231 WKPLGGCLPQV 199
>gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ001_A06 5', mRNA sequence
Length = 417
Score = 172 bits (370), Expect = 2e-042
Identities = 68/75 (90%), Positives = 73/75 (97%)
Frame = +1 / +1
Query: 139 LNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALN 318
LNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL
Sbjct: 1 LNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALR 180
Query: 319 LLITCGKHAPSGFQC 363
LLITCGKH P+GFQC
Sbjct: 181 LLITCGKHPPNGFQC 225
Score = 95.9 bits (203), Expect(2) = 7e-022
Identities = 40/46 (86%), Positives = 40/46 (86%)
Frame = -3 / -1
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQ 139
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQ
Sbjct: 138 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQ 1
Score = 27.6 bits (54), Expect(2) = 7e-022
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -2
Query: 359 WKPDGACLPQV 327
WKP G CLPQV
Sbjct: 221 WKPLGGCLPQV 189
>gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_F02 5', mRNA sequence
Length = 574
Score = 150 bits (323), Expect(2) = 1e-038
Identities = 60/65 (92%), Positives = 64/65 (98%)
Frame = +1 / +3
Query: 112 RTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNI 291
+TCPID LKLNACVDVLSGL+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNI
Sbjct: 378 KTCPIDALKLNACVDVLSGLVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNI 557
Query: 292 NIYLP 306
NIYLP
Sbjct: 558 NIYLP 572
Score = 101 bits (216), Expect(2) = 1e-022
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = -1 / -1
Query: 266 VVQRHSAASRSATPCTSGQHLDLASCPITRWISPLSTSTHAFSFSVSIGHV 114
VVQRHSAASRSATPCTSGQHL AS PITR SPLSTSTHAFSFS SIGHV
Sbjct: 532 VVQRHSAASRSATPCTSGQHLLRASRPITRCTSPLSTSTHAFSFSASIGHV 380
Score = 100 bits (212), Expect(2) = 7e-022
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = -3 / -3
Query: 276 RADGGAEAQRRVQVRHPLHQRAALGPGLLPDHQVDQPAQHVHARVQLQ 133
R DGGAEAQRRVQVRHPLHQRAAL P L PDHQV Q AQHVHARVQLQ
Sbjct: 542 RPDGGAEAQRRVQVRHPLHQRAALAPRLPPDHQVHQSAQHVHARVQLQ 399
Score = 29.0 bits (57), Expect(2) = 1e-038
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 9 SAITTTVRATLRPPDASAITTLRA 80
+A + VRAT+RP D S ++LRA
Sbjct: 212 NATASAVRATIRPTDTSIHSSLRA 283
Score = 24.0 bits (46), Expect(2) = 1e-022
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 78 HVGW*WPRRRGDVGWHVRWW*W 13
HVG R R DV WHVR W
Sbjct: 281 HVGRSVWRCRWDVWWHVRRRQW 216
Score = 23.5 bits (45), Expect(2) = 7e-022
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 79 ARRVVMAEASGGRRVARTVVVMA 11
ARR E S GR VART +A
Sbjct: 282 ARREECMEVSVGRMVARTAEAVA 214
>gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02A12u 3',
mRNA sequence
Length = 531
Score = 149 bits (319), Expect(2) = 1e-036
Identities = 58/65 (89%), Positives = 63/65 (96%)
Frame = +1 / -1
Query: 169 LIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAP 348
L+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLITCGKH P
Sbjct: 468 LVHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPP 289
Query: 349 SGFQC 363
+GFQC
Sbjct: 288 NGFQC 274
Score = 24.0 bits (46), Expect(2) = 1e-036
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / -2
Query: 136 KLNACVDVL 162
KLNACVDVL
Sbjct: 503 KLNACVDVL 477
>gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. vulgare cDNA clone HI12B20
3-PRIME, mRNA sequence
Length = 569
Score = 147 bits (315), Expect = 8e-035
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = +1 / -2
Query: 172 IHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPS 351
+HLVIG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLITCGKH P+
Sbjct: 568 VHLVIGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPN 389
Query: 352 GFQC 363
GFQC
Sbjct: 388 GFQC 377
>gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. vulgare cDNA clone HI08J20
3-PRIME, mRNA sequence
Length = 519
Score = 138 bits (296), Expect = 3e-032
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +1 / -2
Query: 184 IGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
IG+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLITCGKH P+GFQC
Sbjct: 518 IGREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 339
>gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09I10V 5',
mRNA sequence
Length = 459
Score = 131 bits (281), Expect = 4e-030
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = +1 / -2
Query: 187 GQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
G+EARSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLIT GKH P+GFQC
Sbjct: 458 GREARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITXGKHPPNGFQC 282
>gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012D19f, mRNA sequence
Length = 827
Score = 118 bits (253), Expect(2) = 2e-029
Identities = 42/70 (60%), Positives = 58/70 (82%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+D LKL ACVD L+G++H V+G A CCPL+ GVADLDAALCLCTTI+A+ LN+++
Sbjct: 283 CPVDVLKLVACVDALNGVVHAVVGANASETCCPLLSGVADLDAALCLCTTIKAKALNVSL 462
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 463 VLPVAISVLV 492
Score = 30.4 bits (60), Expect(2) = 2e-029
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS FQC
Sbjct: 487 LVNQCGKHVPSSFQC 531
>gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. vulgare cDNA clone HF16F02
5-PRIME, mRNA sequence
Length = 436
Score = 129 bits (276), Expect = 2e-029
Identities = 50/55 (90%), Positives = 53/55 (96%)
Frame = +1 / +1
Query: 199 RSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
RSKCCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLITCGKH P+GFQC
Sbjct: 1 RSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 165
>gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.B01, mRNA sequence
Length = 1148
Score = 118 bits (253), Expect(2) = 4e-029
Identities = 42/70 (60%), Positives = 58/70 (82%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+D LKL ACVD L+G++H V+G A CCPL+ GVADLDAALCLCTTI+A+ LN+++
Sbjct: 151 CPVDVLKLVACVDALNGVVHAVVGANASETCCPLLSGVADLDAALCLCTTIKAKALNVSL 330
Query: 298 YLPIALNLLI 327
LP+A+++L+
Sbjct: 331 VLPVAISVLV 360
Score = 29.0 bits (57), Expect(2) = 4e-029
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH P+ FQC
Sbjct: 355 LVNQCGKHVPASFQC 399
>gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l03 5', mRNA sequence
Length = 629
Score = 122 bits (262), Expect(3) = 2e-028
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTLKL CVD L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 219 CPIDTLKLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 398
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 399 VLPIAIEVLV 428
Score = 21.7 bits (41), Expect(3) = 2e-028
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1 / +3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK P F+C
Sbjct: 423 LVNQCGKTVPDDFKC 467
Score = 21.7 bits (41), Expect(3) = 2e-028
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2 / +1
Query: 14 HHHHRTCHPTSPRRLGHHHP 73
HH H+ C P R HP
Sbjct: 64 HHPHQ*CRPPLLHR*LRRHP 123
>gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l03 5', mRNA sequence
Length = 637
Score = 122 bits (262), Expect(3) = 2e-028
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTLKL CVD L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 226 CPIDTLKLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 405
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 406 VLPIAIEVLV 435
Score = 21.7 bits (41), Expect(3) = 2e-028
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK P F+C
Sbjct: 430 LVNQCGKTVPDDFKC 474
Score = 21.7 bits (41), Expect(3) = 2e-028
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2 / +2
Query: 14 HHHHRTCHPTSPRRLGHHHP 73
HH H+ C P R HP
Sbjct: 71 HHPHQ*CRPPLLHR*LRRHP 130
>gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11n13 5', mRNA sequence
Length = 685
Score = 122 bits (262), Expect(3) = 2e-028
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTLKL CVD L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 219 CPIDTLKLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 398
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 399 VLPIAIEVLV 428
Score = 21.7 bits (41), Expect(3) = 2e-028
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1 / +3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK P F+C
Sbjct: 423 LVNQCGKTVPDDFKC 467
Score = 21.7 bits (41), Expect(3) = 2e-028
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2 / +1
Query: 14 HHHHRTCHPTSPRRLGHHHP 73
HH H+ C P R HP
Sbjct: 64 HHPHQ*CRPPLLHR*LRRHP 123
>gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l03 3', mRNA sequence
Length = 580
Score = 122 bits (262), Expect(2) = 1e-027
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = +1 / -3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTLKL CVD L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 521 CPIDTLKLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 342
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 341 VLPIAIEVLV 312
Score = 21.7 bits (41), Expect(2) = 1e-027
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1 / -3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK P F+C
Sbjct: 317 LVNQCGKTVPDDFKC 273
>gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14c15 3', mRNA sequence
Length = 866
Score = 122 bits (262), Expect = 2e-027
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = +1 / -1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTLKL CVD L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 446 CPIDTLKLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 267
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 266 VLPIAIEVLV 237
>gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. vulgare cDNA clone HF18K17
5-PRIME, mRNA sequence
Length = 424
Score = 122 bits (262), Expect = 2e-027
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = +1 / +3
Query: 208 CCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
CCPLVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLITCGKH P+GFQC
Sbjct: 12 CCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 167
>gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01u 3',
mRNA sequence
Length = 490
Score = 111 bits (237), Expect(2) = 2e-027
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +1 / -3
Query: 217 LVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLITCGKHAPSGFQC 363
LVQGVADLDAALCLCTTIRAR+LNINIYLP+AL LLITCGKH P+GFQC
Sbjct: 440 LVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 294
Score = 30.9 bits (61), Expect(2) = 2e-027
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -1
Query: 178 LVIGQEARSKCCP 216
LVIG+EARS CCP
Sbjct: 481 LVIGREARSXCCP 443
>gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35f14 3', mRNA sequence
Length = 564
Score = 111 bits (237), Expect(2) = 3e-027
Identities = 40/68 (58%), Positives = 56/68 (82%)
Frame = +1 / -3
Query: 124 IDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYL 303
+D LKL ACVD L+G++H V+G A CCPL+ GVADLDAALCLCTTI+A+ LN+++ L
Sbjct: 562 VDVLKLVACVDALNGVVHAVVGANASETCCPLLSGVADLDAALCLCTTIKAKALNVSLVL 383
Query: 304 PIALNLLI 327
P+A+++L+
Sbjct: 382 PVAISVLV 359
Score = 30.4 bits (60), Expect(2) = 3e-027
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / -3
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS FQC
Sbjct: 364 LVNQCGKHVPSSFQC 320
>gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35f14 5', mRNA sequence
Length = 540
Score = 111 bits (237), Expect(2) = 3e-027
Identities = 40/68 (58%), Positives = 56/68 (82%)
Frame = +1 / +1
Query: 124 IDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYL 303
+D LKL ACVD L+G++H V+G A CCPL+ GVADLDAALCLCTTI+A+ LN+++ L
Sbjct: 13 VDVLKLVACVDALNGVVHAVVGANASETCCPLLSGVADLDAALCLCTTIKAKALNVSLVL 192
Query: 304 PIALNLLI 327
P+A+++L+
Sbjct: 193 PVAISVLV 216
Score = 30.4 bits (60), Expect(2) = 3e-027
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGKH PS FQC
Sbjct: 211 LVNQCGKHVPSSFQC 255
>gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32d05 5', mRNA sequence
Length = 734
Score = 113 bits (241), Expect(3) = 4e-027
Identities = 43/70 (61%), Positives = 53/70 (75%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP+DTL+L CVD L+GL+H VIG A CCPL+ GVA LDAALCLCTTI + LNIN+
Sbjct: 472 CPVDTLRLLGCVDALNGLVHTVIGSSASDSCCPLLSGVAGLDAALCLCTTIELKALNINL 651
Query: 298 YLPIALNLLI 327
L IA+ +L+
Sbjct: 652 VLSIAIQVLV 681
Score = 25.4 bits (49), Expect(3) = 4e-027
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK PS FQC
Sbjct: 676 LVNQCGKTVPSDFQC 720
Score = 23.5 bits (45), Expect(3) = 4e-027
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2 / +3
Query: 5 TLGHHHHRTCHPTSPRRLGHHHP 73
TL HHH+ R H HP
Sbjct: 30 TLPLHHHQAQGAQHQPRAAHRHP 98
>gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p03 3', mRNA sequence
Length = 748
Score = 119 bits (255), Expect = 1e-026
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1 / -3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTLKL CV L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 368 CPIDTLKLLGCVXALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 189
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 188 VLPIAIEVLV 159
>gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32d05 3', mRNA sequence
Length = 866
Score = 119 bits (255), Expect = 1e-026
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1 / -2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP DTLKL CVD L GL+H +IG A KCCPL+ GVADLDAALCLCTTI+ + LNIN+
Sbjct: 514 CPHDTLKLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLDAALCLCTTIKLKALNINL 335
Query: 298 YLPIALNLLI 327
LPIA+ +L+
Sbjct: 334 VLPIAIEVLV 305
>gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14c15 5', mRNA sequence
Length = 682
Score = 104 bits (222), Expect(2) = 9e-024
Identities = 41/65 (63%), Positives = 49/65 (75%)
Frame = +1 / +1
Query: 133 LKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIA 312
LKL CVD L+GL+H VIG A CCPL+ GVA LDAALCLCTTI + LNIN+ LPIA
Sbjct: 4 LKLLGCVDALNGLVHTVIGSSASDSCCPLLSGVAGLDAALCLCTTIELKALNINLVLPIA 183
Query: 313 LNLLI 327
+ +L+
Sbjct: 184 IQVLV 198
Score = 78.5 bits (165), Expect(4) = 4e-026
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = +1 / +2
Query: 205 KCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLI 327
KCCPL+ GVADLDAALCLCTTI+ + LNIN+ LPIA+ +L+
Sbjct: 518 KCCPLLSGVADLDAALCLCTTIKLKALNINLVLPIAIEVLV 640
Score = 53.8 bits (111), Expect(4) = 4e-026
Identities = 21/35 (60%), Positives = 24/35 (68%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLV 222
CPIDTLKL CVD L GL+H +IG AR + P V
Sbjct: 430 CPIDTLKLLGCVDALDGLLHALIGSNARRQMLPAV 534
Score = 25.4 bits (49), Expect(2) = 9e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK PS FQC
Sbjct: 193 LVNQCGKTVPSDFQC 237
Score = 21.7 bits (41), Expect(4) = 4e-026
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1 / +2
Query: 319 LLITCGKHAPSGFQC 363
L+ CGK P F+C
Sbjct: 635 LVNQCGKTVPDDFKC 679
Score = 21.7 bits (41), Expect(4) = 4e-026
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +2 / +2
Query: 14 HHHHRTCHPTSPRRLGHHHP 73
HH H+ C P R HP
Sbjct: 275 HHPHQ*CRPPLLHR*LRRHP 334
>gb|AV930310.1|AV930310 AV930310 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p04 3', mRNA sequence
Length = 685
Score = 114 bits (244), Expect = 5e-025
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = +1 / -2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPIDTL L CVD L GL+H +IG A KCCPL+ GVADL AALCLCTTI+ + LNIN+
Sbjct: 369 CPIDTLXLLGCVDALDGLLHALIGSNASDKCCPLLSGVADLXAALCLCTTIKLKALNINL 190
Query: 298 YLPIALNLLI 327
LP A+ +L+
Sbjct: 189 VLPXAIEVLV 160
>gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08H11
5-PRIME, mRNA sequence
Length = 654
Score = 103 bits (220), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 55/70 (78%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L+IN+
Sbjct: 67 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILDINL 246
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 247 NVPIDLSLLV 276
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 283 CGKNVPAGFQC 315
>gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C01
5-PRIME, mRNA sequence
Length = 551
Score = 103 bits (220), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 55/70 (78%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L+IN+
Sbjct: 67 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILDINL 246
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 247 NVPIDLSLLV 276
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 283 CGKNVPAGFQC 315
>gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. vulgare cDNA clone HI05E11
5-PRIME, mRNA sequence
Length = 642
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 25 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 204
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 205 NVPIDLSLLV 234
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 241 CGKNVPAGFQC 273
>gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O01
5-PRIME, mRNA sequence
Length = 629
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 68 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 247
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 248 NVPIDLSLLV 277
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 284 CGKNVPAGFQC 316
>gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. vulgare cDNA clone HF04J15
5-PRIME, mRNA sequence
Length = 626
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 21 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 200
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 201 NVPIDLSLLV 230
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 237 CGKNVPAGFQC 269
>gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 5', mRNA sequence
Length = 604
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 48 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 227
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 228 NVPIDLSLLV 257
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 264 CGKNVPAGFQC 296
>gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P20
5-PRIME, mRNA sequence
Length = 597
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 145 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 324
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 325 NVPIDLSLLV 354
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 361 CGKNVPAGFQC 393
>gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. vulgare cDNA clone HU01E09
5-PRIME, mRNA sequence
Length = 592
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 24 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 203
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 204 NVPIDLSLLV 233
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 240 CGKNVPAGFQC 272
>gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_C11 5', mRNA sequence
Length = 578
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +2
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 14 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 193
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 194 NVPIDLSLLV 223
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 230 CGKNVPAGFQC 262
>gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. vulgare cDNA clone HF22D02
5-PRIME, mRNA sequence
Length = 578
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 16 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 195
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 196 NVPIDLSLLV 225
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 232 CGKNVPAGFQC 264
>gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. vulgare cDNA clone HF24L02
5-PRIME, mRNA sequence
Length = 577
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 16 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 195
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 196 NVPIDLSLLV 225
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 232 CGKNVPAGFQC 264
>gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33k08 3', mRNA sequence
Length = 568
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / -1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 532 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 353
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 352 NVPIDLSLLV 323
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 316 CGKNVPAGFQC 284
>gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_P01 5', mRNA sequence
Length = 551
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CPID LKL C +VL+GLI+L +G + CC L+QG+ADL+AA+CLCT ++A +L IN+
Sbjct: 123 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLCTALKANILGINL 302
Query: 298 YLPIALNLLI 327
+PI L+LL+
Sbjct: 303 NVPIDLSLLV 332
Score = 28.1 bits (55), Expect(2) = 3e-024
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 331 CGKHAPSGFQC 363
CGK+ P+GFQC
Sbjct: 339 CGKNVPAGFQC 371
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 295,720,699
Number of Sequences: 312970
Number of extensions: 4104357
Number of successful extensions: 56483
Number of sequences better than 1.0e-020: 94
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8313674964
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)