TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594405.2.1
(637 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF287726.1|AF287726 Hordeum vulgare clone pFL699 1,4-bet... 207 6e-053
emb|AJ849364.1| Hordeum vulgare x-I gene for endo-1,4-beta-... 207 6e-053
emb|AJ849366.1| Hordeum vulgare x-II gene for endo-1,4-beta... 204 3e-052
gb|AF287722.1|AF287722 Hordeum vulgare clone pFL083 1,4-bet... 203 7e-052
gb|AF287723.1|AF287723 Hordeum vulgare clone pFL400 1,4-bet... 203 7e-052
gb|AF287731.1|AF287731 Hordeum vulgare clone pFL834 1,4-bet... 203 7e-052
gb|U59312.1|HVU59312 Hordeum vulgare (1,4)-beta-xylan endoh... 201 3e-051
gb|BI778071.2|BI778071 EBro07_SQ002_C10_R root, 3 week, red... 189 1e-047
gb|BF259812.2|BF259812 HVSMEf0020F08f Hordeum vulgare seedl... 84 5e-047
gb|U59313.1|HVU59313 Hordeum vulgare (1,4)-beta-xylan endoh... 170 6e-042
>gb|AF287726.1|AF287726 Hordeum vulgare clone pFL699 1,4-beta-D xylan xylanohydrolase gene,
complete cds
Length = 5474
Score = 207 bits (446), Expect = 6e-053
Identities = 83/141 (58%), Positives = 106/141 (75%)
Frame = -2 / +1
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGH+ +PVGE+IC +LD+LA G+PIW TELDV + +RA DLEV LRE
Sbjct: 3172 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDVPEYDVGLRAKDLEVVLRE 3351
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G
Sbjct: 3352 AYAHPAVEGIVFWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDG 3531
Query: 270 EFKFRGYHGSYTVEVNTPSGK 208
FKFRG++G Y VEV T GK
Sbjct: 3532 NFKFRGFYGRYVVEVTTAKGK 3594
Score = 119 bits (254), Expect = 2e-026
Identities = 62/140 (44%), Positives = 74/140 (52%)
Frame = +2 / -1
Query: 212 PEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRN 391
P V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+
Sbjct: 3590 PFAVVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNICPASLTVPSASTSQAFWRH 3411
Query: 392 INISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHM 571
I PQ +P TAGC + + TS+SV Q+G P +ASLS + M
Sbjct: 3410 IVPCMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQMGTPVLASLSSAAQM 3231
Query: 572 ISPTGWLI*PCTPIPPTGAP 631
SPTG+ PC+P+P T AP
Sbjct: 3230 TSPTGFCTWPCSPMPRTTAP 3171
>emb|AJ849364.1| Hordeum vulgare x-I gene for endo-1,4-beta-xylanase, exons 1-3,
allele BetzesX-I
Length = 2094
Score = 207 bits (446), Expect = 6e-053
Identities = 83/141 (58%), Positives = 106/141 (75%)
Frame = -2 / +2
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGH+ +PVGE+IC +LD+LA G+PIW TELDV + +RA DLEV LRE
Sbjct: 1535 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDVPEYDVGLRAKDLEVVLRE 1714
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G
Sbjct: 1715 AYAHPAVEGIVFWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDG 1894
Query: 270 EFKFRGYHGSYTVEVNTPSGK 208
FKFRG++G Y VEV T GK
Sbjct: 1895 NFKFRGFYGRYVVEVTTAKGK 1957
Score = 119 bits (254), Expect = 2e-026
Identities = 62/140 (44%), Positives = 74/140 (52%)
Frame = +2 / -1
Query: 212 PEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRN 391
P V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+
Sbjct: 1953 PFAVVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNICPASLTVPSASTSQAFWRH 1774
Query: 392 INISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHM 571
I PQ +P TAGC + + TS+SV Q+G P +ASLS + M
Sbjct: 1773 IVPCMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQMGTPVLASLSSAAQM 1594
Query: 572 ISPTGWLI*PCTPIPPTGAP 631
SPTG+ PC+P+P T AP
Sbjct: 1593 TSPTGFCTWPCSPMPRTTAP 1534
>emb|AJ849366.1| Hordeum vulgare x-II gene for endo-1,4-beta-xylanase, exons 1-3,
allele BetzesX-II
Length = 2161
Score = 204 bits (441), Expect = 3e-052
Identities = 82/137 (59%), Positives = 103/137 (75%)
Frame = -2 / +1
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGHIS+PVGE+IC +LD+LA G+P+W TELDV + +RA DLEV LRE
Sbjct: 1597 GAVVRGIGLQGHISNPVGEVICGALDRLAATGVPVWFTELDVCEADVGLRAQDLEVVLRE 1776
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WG + M+R+ A LVDADGT+NEAG+ + L +EW T G+VD+ G
Sbjct: 1777 AYAHPAVEGIVFWGIMQGKMWRKDAWLVDADGTVNEAGQMLMNLHKEWKTDARGNVDNDG 1956
Query: 270 EFKFRGYHGSYTVEVNT 220
FKFRG+HG Y VEV T
Sbjct: 1957 NFKFRGFHGRYVVEVTT 2007
Score = 124 bits (265), Expect = 5e-028
Identities = 63/137 (45%), Positives = 73/137 (53%)
Frame = +2 / -3
Query: 221 VFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRNINI 400
V TST Y PW PLNL P ST P V HS R + PAS VPSAST A R+I
Sbjct: 2006 VVTSTTYLPWKPLNLKFPSLSTFPRASVFHSLWRFMSIWPASFTVPSASTSQASLRHILP 1827
Query: 401 SQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHMISP 580
PQ +P TAGC + ++ TS+SV Q G P ASLSR M SP
Sbjct: 1826 CMMPQNTMPSTAGCAYASRSTTSRSWARRPTSASHTSSSVNQTGTPVAASLSRAPQMTSP 1647
Query: 581 TGWLI*PCTPIPPTGAP 631
TG L+ PC+P+P T AP
Sbjct: 1646 TGLLMWPCSPMPRTTAP 1596
>gb|AF287722.1|AF287722 Hordeum vulgare clone pFL083 1,4-beta-D xylan xylanohydrolase mRNA,
partial cds
Length = 865
Score = 203 bits (438), Expect = 7e-052
Identities = 82/141 (58%), Positives = 105/141 (74%)
Frame = -2 / +2
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGH+ +PVGE+IC +LD+LA G+PIW TELDV + +RA DLEV LRE
Sbjct: 170 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDVPEYDVGLRAKDLEVVLRE 349
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G
Sbjct: 350 AYAHPAVEGIVFWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDG 529
Query: 270 EFKFRGYHGSYTVEVNTPSGK 208
FKFRG++G Y VEV T K
Sbjct: 530 NFKFRGFYGRYVVEVTTAKRK 592
Score = 116 bits (249), Expect = 8e-026
Identities = 61/137 (44%), Positives = 73/137 (53%)
Frame = +2 / -2
Query: 221 VFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRNINI 400
V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+I
Sbjct: 579 VVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNIWPASLTVPSASTSQAFWRHIVP 400
Query: 401 SQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHMISP 580
PQ +P TAGC + + TS+SV Q+G P +ASLS + M SP
Sbjct: 399 CMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQMGTPVLASLSSAAQMTSP 220
Query: 581 TGWLI*PCTPIPPTGAP 631
TG+ PC+P+P T AP
Sbjct: 219 TGFCTWPCSPMPRTTAP 169
>gb|AF287723.1|AF287723 Hordeum vulgare clone pFL400 1,4-beta-D xylan xylanohydrolase mRNA,
partial cds
Length = 1691
Score = 203 bits (438), Expect = 7e-052
Identities = 82/141 (58%), Positives = 105/141 (74%)
Frame = -2 / +2
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGH+ +PVGE+IC +LD+LA G+PIW TELDV + +RA DLEV LRE
Sbjct: 1001 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDVPEYDVGLRAKDLEVVLRE 1180
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G
Sbjct: 1181 AYAHPAVEGIVFWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDG 1360
Query: 270 EFKFRGYHGSYTVEVNTPSGK 208
FKFRG++G Y VEV T K
Sbjct: 1361 NFKFRGFYGRYVVEVTTAKRK 1423
Score = 116 bits (249), Expect = 8e-026
Identities = 61/137 (44%), Positives = 73/137 (53%)
Frame = +2 / -3
Query: 221 VFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRNINI 400
V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+I
Sbjct: 1410 VVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNIWPASLTVPSASTSQAFWRHIVP 1231
Query: 401 SQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHMISP 580
PQ +P TAGC + + TS+SV Q+G P +ASLS + M SP
Sbjct: 1230 CMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQMGTPVLASLSSAAQMTSP 1051
Query: 581 TGWLI*PCTPIPPTGAP 631
TG+ PC+P+P T AP
Sbjct: 1050 TGFCTWPCSPMPRTTAP 1000
>gb|AF287731.1|AF287731 Hordeum vulgare clone pFL834 1,4-beta-D xylan xylanohydrolase mRNA,
complete cds
Length = 1951
Score = 203 bits (438), Expect = 7e-052
Identities = 82/141 (58%), Positives = 105/141 (74%)
Frame = -2 / +1
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGH+ +PVGE+IC +LD+LA G+PIW TELDV + +RA DLEV LRE
Sbjct: 1261 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPIWFTELDVPEYDVGLRAKDLEVVLRE 1440
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G
Sbjct: 1441 AYAHPAVEGIVFWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDG 1620
Query: 270 EFKFRGYHGSYTVEVNTPSGK 208
FKFRG++G Y VEV T K
Sbjct: 1621 NFKFRGFYGRYVVEVTTAKRK 1683
Score = 116 bits (249), Expect = 8e-026
Identities = 61/137 (44%), Positives = 73/137 (53%)
Frame = +2 / -3
Query: 221 VFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRNINI 400
V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+I
Sbjct: 1670 VVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNIWPASLTVPSASTSQAFWRHIVP 1491
Query: 401 SQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHMISP 580
PQ +P TAGC + + TS+SV Q+G P +ASLS + M SP
Sbjct: 1490 CMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQMGTPVLASLSSAAQMTSP 1311
Query: 581 TGWLI*PCTPIPPTGAP 631
TG+ PC+P+P T AP
Sbjct: 1310 TGFCTWPCSPMPRTTAP 1260
>gb|U59312.1|HVU59312 Hordeum vulgare (1,4)-beta-xylan endohydrolase isoenzyme X-I mRNA,
complete cds
Length = 1630
Score = 201 bits (433), Expect = 3e-051
Identities = 81/141 (57%), Positives = 104/141 (73%)
Frame = -2 / +2
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGH+ +PVGE+IC +LD+LA G+P W TELDV + +RA DLEV LRE
Sbjct: 926 GAVVRGIGLQGHVQNPVGEVICAALDRLAKTGVPTWFTELDVPEYDVGLRAKDLEVVLRE 1105
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQG 271
A+AHPAV GI+ WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G
Sbjct: 1106 AYAHPAVEGIVFWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDG 1285
Query: 270 EFKFRGYHGSYTVEVNTPSGK 208
FKFRG++G Y VEV T K
Sbjct: 1286 NFKFRGFYGRYVVEVTTAKRK 1348
Score = 117 bits (251), Expect = 4e-026
Identities = 61/137 (44%), Positives = 73/137 (53%)
Frame = +2 / -2
Query: 221 VFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRNINI 400
V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+I
Sbjct: 1335 VVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNIWPASLTVPSASTSQAFWRHIVP 1156
Query: 401 SQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHMISP 580
PQ +P TAGC + + TS+SV Q+G P +ASLS + M SP
Sbjct: 1155 CMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQVGTPVLASLSSAAQMTSP 976
Query: 581 TGWLI*PCTPIPPTGAP 631
TG+ PC+P+P T AP
Sbjct: 975 TGFCTWPCSPMPRTTAP 925
>gb|BI778071.2|BI778071 EBro07_SQ002_C10_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_C10 5', mRNA sequence
Length = 633
Score = 189 bits (408), Expect = 1e-047
Identities = 75/130 (57%), Positives = 97/130 (74%)
Frame = -2 / +1
Query: 597 HISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGII 418
H+ +PVGE+IC +LD+LA G+PIW TELDV + +RA DLEV LREA+AHPAV GI+
Sbjct: 1 HVQNPVGEVICAALDRLAKTGVPIWFTELDVPEYDVGLRAKDLEVVLREAYAHPAVEGIV 180
Query: 417 LWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGSY 238
WGF + M+R++A LVDADGT+NEAG+ +L L++EW T G+ D G FKFRG++G Y
Sbjct: 181 FWGFMQGTMWRQNAWLVDADGTVNEAGQMFLNLQKEWKTDARGNFDGDGNFKFRGFYGRY 360
Query: 237 TVEVNTPSGK 208
VEV T GK
Sbjct: 361 VVEVTTAKGK 390
Score = 101 bits (215), Expect = 4e-021
Identities = 55/126 (43%), Positives = 65/126 (51%)
Frame = +2 / -2
Query: 212 PEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRN 391
P V TST Y P PLNL P S P V HS R R + PASL VPSAST A R+
Sbjct: 386 PFAVVTSTTYLP*KPLNLKFPSPSKFPRASVFHSFCRFRNIWPASLTVPSASTSQAFWRH 207
Query: 392 INISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHM 571
I PQ +P TAGC + + TS+SV Q+G P +ASLS + M
Sbjct: 206 IVPCMKPQNTMPSTAGCAYASRSTTSRSLARRPTSYSGTSSSVNQMGTPVLASLSSAAQM 27
Query: 572 ISPTGW 589
SPTG+
Sbjct: 26 TSPTGF 9
>gb|BF259812.2|BF259812 HVSMEf0020F08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020F08f, mRNA sequence
Length = 802
Score = 83.5 bits (176), Expect(5) = 5e-047
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -2 / +1
Query: 636 DRGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLP 529
+RGAPVGGIGVQGHISHPVG+IICDSLDKLAILG P
Sbjct: 271 ERGAPVGGIGVQGHISHPVGDIICDSLDKLAILGPP 378
Score = 83.1 bits (175), Expect(4) = 1e-032
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +2 / -3
Query: 530 GRPSMASLSRESHMISPTGWLI*PCTPIPPTGAPLS 637
G PS+ASLSRESHMISPTGWLI*PCTPIPPTGAP S
Sbjct: 377 GGPSIASLSRESHMISPTGWLI*PCTPIPPTGAPRS 270
Score = 74.4 bits (156), Expect(5) = 5e-047
Identities = 31/43 (72%), Positives = 33/43 (76%)
Frame = -2 / +1
Query: 480 ADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGT 352
ADDLEV LRE FA PAV G LWGFWEM MFR HA+L +DGT
Sbjct: 430 ADDLEVCLRECFAPPAVEGSGLWGFWEMVMFRNHANLGHSDGT 558
Score = 50.6 bits (104), Expect(5) = 5e-047
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = -2 / +2
Query: 351 INEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHG 244
+NEA +R+LALKQEWLT+ +G E KFRG G
Sbjct: 560 VNEARKRFLALKQEWLTKPDGDFIRHAESKFRGLPG 667
Score = 48.3 bits (99), Expect(4) = 1e-032
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3 / -1
Query: 357 HQHRPDGRALET*TSPRIPRG*FPPQQDVQMLPGGTPLDH 476
H++ P ET* SPRIPRG P+Q + +PGGTP DH
Sbjct: 553 HRNDPG*HDSET*PSPRIPRGHSLPRQGGRSIPGGTPRDH 434
Score = 40.0 bits (81), Expect(4) = 1e-032
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = +2 / -2
Query: 245 PWYPLNLNSPW*STLPFIRVSHSCLRARYLLPAS 346
P PLN +S W P VSHSC RAR LL AS
Sbjct: 666 PGRPLNFDSAWRMKSPSGLVSHSCFRARNLLRAS 565
Score = 29.9 bits (59), Expect(5) = 5e-047
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -2 / +2
Query: 534 LPIWITELDVTA 499
LPIWITELDV+A
Sbjct: 374 LPIWITELDVSA 409
Score = 23.5 bits (45), Expect(4) = 1e-032
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / -2
Query: 500 AVTSNSVIQIGRPSMASL 553
A TS+SVIQIGR L
Sbjct: 408 AETSSSVIQIGRAQYRQL 355
Score = 23.1 bits (44), Expect(5) = 5e-047
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2 / +2
Query: 201 RSFVVDKDSPVQ 166
R FVV+K++PVQ
Sbjct: 713 RRFVVEKENPVQ 748
>gb|U59313.1|HVU59313 Hordeum vulgare (1,4)-beta-xylan endohydrolase isoenzyme X-II mRNA,
partial cds
Length = 1140
Score = 170 bits (366), Expect = 6e-042
Identities = 69/118 (58%), Positives = 89/118 (75%)
Frame = -2 / +1
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLRE 451
GA V GIG+QGHIS+PVGE+IC +LD+LA G+P+W TELDV + +RA DLEV LRE
Sbjct: 784 GAVVRGIGLQGHISNPVGEVICGALDRLAATGVPVWFTELDVCEADVGLRAQDLEVVLRE 963
Query: 450 AFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDH 277
A+AHPAV GI+ WG + M+R+ A LVDADGT+NEAG+ + L +EW T G+VD+
Sbjct: 964 AYAHPAVEGIVFWGIMQGKMWRKDAWLVDADGTVNEAGQMLMNLHKEWKTDARGNVDN 1137
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 347,142,976
Number of Sequences: 312970
Number of extensions: 6511114
Number of successful extensions: 89082
Number of sequences better than 1.0e-020: 10
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6786673440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)