TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591368.2.1
         (543 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ468428.1|BQ468428  HM01D16T HM Hordeum vulgare subsp. v...   131   3e-030

>gb|BQ468428.1|BQ468428 HM01D16T HM Hordeum vulgare subsp. vulgare cDNA clone HM01D16
           5-PRIME, mRNA sequence
          Length = 455

 Score =  131 bits (281), Expect = 3e-030
 Identities = 54/71 (76%), Positives = 57/71 (80%)
 Frame = -1 / +1

                                                                       
Query: 543 RVKLNVSPGTSFHCNEPGWFRVCYANMDDDTMEVALDRIRRFVRQHQHSKAKAERWAATR 364
           +VKLNVSPGTSF C EPGWFRVC+ANMDD+TM VALDRIR FVRQHQ  KAKA  WAA  
Sbjct: 220 KVKLNVSPGTSFRCREPGWFRVCHANMDDETMGVALDRIRLFVRQHQQQKAKARCWAARG 399

                      
Query: 363 PLRLSLPRRGA 331
            L LSL R GA
Sbjct: 400 QLHLSLQRHGA 432



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 221,903,261
Number of Sequences: 312970
Number of extensions: 3599477
Number of successful extensions: 130125
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 5554858270
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)