TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591131.2.1
(596 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 200 4e-051
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 200 4e-051
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 200 4e-051
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 200 4e-051
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 194 3e-049
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 187 4e-047
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 183 8e-046
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 183 8e-046
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 178 2e-044
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 177 3e-044
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 173 8e-043
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 112 9e-042
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 160 6e-039
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 158 2e-038
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 153 7e-037
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 149 9e-036
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 146 1e-034
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 146 1e-034
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 112 1e-034
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 144 5e-034
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 112 8e-034
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 143 8e-034
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 142 2e-033
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 82 9e-033
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 82 9e-033
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 112 4e-032
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 111 6e-032
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 136 9e-032
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 132 2e-030
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 130 5e-030
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 127 4e-029
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 126 1e-028
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 100 2e-028
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 122 1e-027
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 117 4e-026
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 88 2e-025
gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. v... 115 3e-025
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 111 3e-024
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 71 5e-024
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 109 1e-023
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 109 1e-023
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 107 6e-023
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 78 3e-022
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 62 1e-021
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 100 5e-021
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 200 bits (432), Expect = 4e-051
Identities = 79/135 (58%), Positives = 99/135 (73%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 109 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 288
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G+V +V +KGS +GW M RNWGQNWQ +ADL Q LSF VT GRTVT+ + A
Sbjct: 289 NVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAA 468
Query: 233 PADWMFAQTFEGKQF 189
PA W F QTFEG QF
Sbjct: 469 PAGWSFGQTFEGGQF 513
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 200 bits (432), Expect = 4e-051
Identities = 79/135 (58%), Positives = 99/135 (73%)
Frame = -1 / -3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 658 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 479
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G+V +V +KGS +GW M RNWGQNWQ +ADL Q LSF VT GRTVT+ + A
Sbjct: 478 NVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAA 299
Query: 233 PADWMFAQTFEGKQF 189
PA W F QTFEG QF
Sbjct: 298 PAGWSFGQTFEGGQF 254
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 200 bits (432), Expect = 4e-051
Identities = 79/135 (58%), Positives = 99/135 (73%)
Frame = -1 / +2
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 47 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 226
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G+V +V +KGS +GW M RNWGQNWQ +ADL Q LSF VT GRTVT+ + A
Sbjct: 227 NVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAA 406
Query: 233 PADWMFAQTFEGKQF 189
PA W F QTFEG QF
Sbjct: 407 PAGWSFGQTFEGGQF 451
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 200 bits (432), Expect = 4e-051
Identities = 79/135 (58%), Positives = 99/135 (73%)
Frame = -1 / +3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 33 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 212
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G+V +V +KGS +GW M RNWGQNWQ +ADL Q LSF VT GRTVT+ + A
Sbjct: 213 NVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAA 392
Query: 233 PADWMFAQTFEGKQF 189
PA W F QTFEG QF
Sbjct: 393 PAGWSFGQTFEGGQF 437
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 194 bits (419), Expect = 3e-049
Identities = 76/135 (56%), Positives = 96/135 (71%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN P+ H +L+E F R+A+A+AG+VPVQ+RRV+C + GG+RFTI+G ++F VLIT
Sbjct: 16 GGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLIT 195
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G++ +V VK TGW+ M NWG NWQ A L QPLSF VT GRT T+ +VA
Sbjct: 196 NVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVA 375
Query: 233 PADWMFAQTFEGKQF 189
P W F QTF G QF
Sbjct: 376 PYGWTFGQTFAGSQF 420
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 187 bits (403), Expect = 4e-047
Identities = 73/130 (56%), Positives = 93/130 (71%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN P+ H +L+E F R+A+A+AG+VPVQ+RRV+C + GG+RFTI+G ++F VLIT
Sbjct: 64 GGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVLIT 243
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G++ +V VK TGW+ M NWG NWQ A L QPLSF VT GRT T+ +VA
Sbjct: 244 NVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVA 423
Query: 233 PADWMFAQTF 204
P W F QTF
Sbjct: 424 PYGWTFGQTF 453
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 183 bits (394), Expect = 8e-046
Identities = 70/136 (51%), Positives = 95/136 (69%)
Frame = -1 / +3
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGG CN P H L AF ++A KAG++P+Q+RRV C R GG+RF++SG + F VLI
Sbjct: 120 AGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLI 299
Query: 416 TNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSV 237
+NV G+V +VK+KG+ +GW+ MGRNWGQ W + DL QP+SFE+T G T+T ++V
Sbjct: 300 SNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNV 479
Query: 236 APADWMFAQTFEGKQF 189
P DW F +T+ GKQF
Sbjct: 480 VPKDWEFGKTYTGKQF 527
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 183 bits (394), Expect = 8e-046
Identities = 70/136 (51%), Positives = 95/136 (69%)
Frame = -1 / +3
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGG CN P H L AF ++A KAG++P+Q+RRV C R GG+RF++SG + F VLI
Sbjct: 120 AGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLI 299
Query: 416 TNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSV 237
+NV G+V +VK+KG+ +GW+ MGRNWGQ W + DL QP+SFE+T G T+T ++V
Sbjct: 300 SNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNV 479
Query: 236 APADWMFAQTFEGKQF 189
P DW F +T+ GKQF
Sbjct: 480 VPKDWEFGKTYTGKQF 527
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 178 bits (383), Expect = 2e-044
Identities = 68/134 (50%), Positives = 93/134 (69%)
Frame = -1 / +3
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGG CN P H L AF ++A KAG++P+Q+RRV C R GG+RF++SG + F VLI
Sbjct: 120 AGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLI 299
Query: 416 TNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSV 237
+NV G+V +VK+KG+ +GW+ MGRNWGQ W + DL QP+SFE+T G T+T ++V
Sbjct: 300 SNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNV 479
Query: 236 APADWMFAQTFEGK 195
P DW F +T+ GK
Sbjct: 480 VPKDWEFGKTYTGK 521
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 177 bits (382), Expect = 3e-044
Identities = 71/132 (53%), Positives = 90/132 (68%)
Frame = -1 / +1
Query: 584 CNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVA 405
CN PR H +++E AFL + + +AGIVPV +RRV C + GG+RFTI+G ++F VL+TNVA
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 404 ADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPAD 225
G+ +V +KG+RTGW M RNWG NWQ L Q LSF VT GRTVT+ + PA
Sbjct: 181 GAGDARSVSIKGTRTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAG 360
Query: 224 WMFAQTFEGKQF 189
W F QTF G QF
Sbjct: 361 WQFRQTF*GAQF 396
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 173 bits (372), Expect = 8e-043
Identities = 69/123 (56%), Positives = 88/123 (71%)
Frame = -1 / +2
Query: 557 LSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVK 378
++E AFL +A+ +AGIVPV +RRV C + GG+RFTI+G ++F VL+TNVA G+ +V
Sbjct: 2 MAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVS 181
Query: 377 VKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEG 198
+KG+RTGW M RNWG NWQ + L Q LSF VT GRTVT+ + APA W F QTFEG
Sbjct: 182 IKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEG 361
Query: 197 KQF 189
QF
Sbjct: 362 AQF 370
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 112 bits (239), Expect(2) = 9e-042
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = -1 / +3
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGGWCN PR H ++S+ F R+A +AGIVPV +RRV+C + GG+RFTI+G ++F VL+
Sbjct: 180 AGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLV 359
Query: 416 TNVAADGEVAAVKVKGSRT 360
TNV G+V AV VK +R+
Sbjct: 360 TNVGGPGDVHAVSVKSTRS 416
Score = 77.6 bits (163), Expect(2) = 9e-042
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = -1 / +3
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
W + RNWGQNWQ +A L Q LSF VT G G++V + + P W F QTF G QF
Sbjct: 423 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 590
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 160 bits (344), Expect = 6e-039
Identities = 64/130 (49%), Positives = 84/130 (64%)
Frame = -1 / -3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H ++S+ A+ +A +AGIVPV ++RVSC + G+RF ISG +F V++T
Sbjct: 488 GGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRFGISGRDYFELVVVT 309
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NV G V + +KGS T W+ M RNWG NWQ +A L Q LSF V GR TA VA
Sbjct: 308 NVGGSGVVVQMWIKGSNTNWLAMSRNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVA 129
Query: 233 PADWMFAQTF 204
P++W F T+
Sbjct: 128 PSNWWFGATY 99
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 158 bits (340), Expect = 2e-038
Identities = 64/121 (52%), Positives = 84/121 (69%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 190 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 369
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVA 234
NVA G+V +V +KGS +GW M WG NWQ +ADL Q LSF+VT R VT + A
Sbjct: 370 NVAGAGDVQSVSIKGSSSGWQAMFPQWGHNWQSNADLDGQSLSFQVTLTYRRDVTINNAA 549
Query: 233 P 231
P
Sbjct: 550 P 552
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 153 bits (329), Expect = 7e-037
Identities = 59/107 (55%), Positives = 78/107 (72%)
Frame = -1 / +3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E AFL +A+ +AGIVPV +RRV C + GG+RFTI+G ++F VL+T
Sbjct: 447 GGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVT 626
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVT 273
NV G+ +V +KG+RTGW M RNWG NWQ + L Q LSF+VT
Sbjct: 627 NVXGAGDARSVFIKGTRTGWQAMSRNWGMNWQSNTFLGRQCLSFKVT 767
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 149 bits (321), Expect = 9e-036
Identities = 61/101 (60%), Positives = 73/101 (72%)
Frame = -1 / +1
Query: 491 RVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCD 312
RV C + GGMRFTI+G ++F VL+TNVA G+V +V +KGS +GW M RNWGQNWQ +
Sbjct: 13 RVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSN 192
Query: 311 ADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
ADL Q LSF VT GRTVT+ + APA W F QTFEG QF
Sbjct: 193 ADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 315
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 146 bits (313), Expect = 1e-034
Identities = 57/104 (54%), Positives = 76/104 (73%)
Frame = -1 / +2
Query: 515 GIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRN 336
GIVPV ++RV C + GG+RFT++G +F VL++NV + G + +V +KGSRTGW+PM RN
Sbjct: 86 GIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSRTGWMPMSRN 265
Query: 335 WGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTF 204
WG NWQ +A L Q LSF+VT G+T+T +VAPA W F QTF
Sbjct: 266 WGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 146 bits (313), Expect = 1e-034
Identities = 54/97 (55%), Positives = 72/97 (74%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E AFL +A+ +AGIVPV +RRV C + GG+RFTI+G ++F VL+T
Sbjct: 229 GGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVT 408
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADL 303
NVA G+ +V +KG+RTGW M RNWG NWQ + L
Sbjct: 409 NVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFL 519
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 112 bits (239), Expect(2) = 1e-034
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = -1 / +2
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGGWCN PR H ++S+ F R+A +AGIVPV +RRV+C + GG+RFTI+G ++F VL+
Sbjct: 53 AGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLV 232
Query: 416 TNVAADGEVAAVKVKGSRT 360
TNV G+V AV VK +R+
Sbjct: 233 TNVGGPGDVHAVSVKSTRS 289
Score = 53.8 bits (111), Expect(2) = 1e-034
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -1 / +2
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTA 246
W + RNWGQNWQ +A L Q LSF VT G G++V +
Sbjct: 296 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVS 406
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 144 bits (308), Expect = 5e-034
Identities = 53/92 (57%), Positives = 70/92 (76%)
Frame = -1 / +3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 252 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 431
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQ 318
NVA G+V +V +KGS +GW M RNWGQNWQ
Sbjct: 432 NVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQ 527
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 112 bits (239), Expect(2) = 8e-034
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = -1 / +2
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGGWCN PR H ++S+ F R+A +AGIVPV +RRV+C + GG+RFTI+G ++F VL+
Sbjct: 176 AGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLV 355
Query: 416 TNVAADGEVAAVKVKGSRT 360
TNV G+V AV VK +R+
Sbjct: 356 TNVGGPGDVHAVSVKSTRS 412
Score = 51.0 bits (105), Expect(2) = 8e-034
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -1 / +2
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGR 258
W + RNWGQNWQ +A L Q LSF VT G G+
Sbjct: 419 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQ 517
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 143 bits (307), Expect = 8e-034
Identities = 59/116 (50%), Positives = 78/116 (67%)
Frame = -1 / +1
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGG CN P H L AF ++A KAG++P+Q+RRV C R GG+RF++SG + F VLI
Sbjct: 238 AGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLI 417
Query: 416 TNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVT 249
+NV G+V + K+KG+ +GW+ MGRNWGQ W DL QP+SF +T G G T T
Sbjct: 418 SNVGGAGDVRSRKIKGTDSGWLYMGRNWGQIWVIIFDLTGQPVSFGLTLGDGATKT 585
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 142 bits (304), Expect = 2e-033
Identities = 53/92 (57%), Positives = 69/92 (75%)
Frame = -1 / +3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL T
Sbjct: 147 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLXT 326
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQ 318
NVA G+V +V +KGS +GW M RNWGQNWQ
Sbjct: 327 NVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQ 422
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 82.2 bits (173), Expect(2) = 9e-033
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = -1 / +2
Query: 542 FLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSR 363
F R+A +AGIVPV +RRV+C + GG+RFTI+G ++F VL+TNV G+V AV VK +R
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 362 T 360
+
Sbjct: 182 S 184
Score = 77.6 bits (163), Expect(2) = 9e-033
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = -1 / +2
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
W + RNWGQNWQ +A L Q LSF VT G G++V + + P W F QTF G QF
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 82.2 bits (173), Expect(2) = 9e-033
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = -1 / +2
Query: 542 FLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSR 363
F R+A +AGIVPV +RRV+C + GG+RFTI+G ++F VL+TNV G+V AV VK +R
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 362 T 360
+
Sbjct: 182 S 184
Score = 77.6 bits (163), Expect(2) = 9e-033
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = -1 / +2
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
W + RNWGQNWQ +A L Q LSF VT G G++V + + P W F QTF G QF
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 112 bits (239), Expect(2) = 4e-032
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = -1 / +3
Query: 596 AGGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLI 417
AGGWCN PR H ++S+ F R+A +AGIVPV +RRV+C + GG+RFTI+G ++F VL+
Sbjct: 159 AGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLV 338
Query: 416 TNVAADGEVAAVKVKGSRT 360
TNV G+V AV VK +R+
Sbjct: 339 TNVGGPGDVHAVSVKSTRS 395
Score = 45.1 bits (92), Expect(2) = 4e-032
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1 / +3
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVT 273
W + RNWGQNWQ +A L Q LSF VT
Sbjct: 402 WQALSRNWGQNWQSNALLDGQGLSFRVT 485
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 111 bits (236), Expect(3) = 6e-032
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 172 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 351
Query: 413 NVAADGEVAAVKVKGSRTGWIPM 345
NVA G+V +V +KG G P+
Sbjct: 352 NVAGAGDVQSVSIKGPAPGGGPV 420
Score = 32.7 bits (65), Expect(3) = 6e-032
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +2
Query: 347 MGRNWGQNWQCDADLR 300
+ RNWGQNWQ + LR
Sbjct: 416 LSRNWGQNWQSNGGLR 463
Score = 31.3 bits (62), Expect(3) = 6e-032
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1 / +1
Query: 299 AQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQ 192
A+ SF + T+ + AP+ W F QTF+G+Q
Sbjct: 466 ARGCSFGSPLAKAEPSTSTTSAPSRWSFGQTFQGRQ 573
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 136 bits (292), Expect = 9e-032
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -1 / -3
Query: 476 RAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRA 297
+ GG+RFTI+G ++F VL+TNVA G+ +V +KG+RTGW M RNWG NWQ + L
Sbjct: 699 KKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDG 520
Query: 296 QPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
Q LSF VT GRTVT+ + APA W F QTFEG QF
Sbjct: 519 QCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 412
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 132 bits (283), Expect = 2e-030
Identities = 49/91 (53%), Positives = 68/91 (74%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GG+RFTI+G ++F VL+T
Sbjct: 385 GGWCNPPRAHCDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVT 564
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNW 321
NVA G+V +V +KGS +GW M +WGQNW
Sbjct: 565 NVAGAGDVQSVSIKGSSSGWQAMCPHWGQNW 657
>gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06A13u 3', mRNA sequence
Length = 523
Score = 130 bits (279), Expect = 5e-030
Identities = 53/106 (50%), Positives = 68/106 (64%)
Frame = -1 / -2
Query: 521 KAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMG 342
+AGIVPV ++RVSC + G+RF ISG +F V++TNV G V + +KGS T W+ M
Sbjct: 519 QAGIVPVMYKRVSCQKRDGIRFGISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAMS 340
Query: 341 RNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTF 204
RNWG NWQ +A L Q LSF V GR TA VAP++W F T+
Sbjct: 339 RNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATY 202
>gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N24 5', mRNA sequence
Length = 370
Score = 127 bits (273), Expect = 4e-029
Identities = 45/91 (49%), Positives = 64/91 (70%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H ++S+ A+ + +AGI+PV +++V C R GG+RFTI+G +F VL+
Sbjct: 94 GGWCNPPRHHFDMSQPAWENIGIYRAGIIPVFYQQVKCWRQGGVRFTINGFNYFELVLVA 273
Query: 413 NVAADGEVAAVKVKGSRTGWIPMGRNWGQNW 321
N+A G + ++ VKG+ T WIPM RNWG NW
Sbjct: 274 NIAGSGSIKSMSVKGTNTAWIPMSRNWGANW 366
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 126 bits (269), Expect = 1e-028
Identities = 50/92 (54%), Positives = 63/92 (68%)
Frame = -1 / +2
Query: 491 RVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCD 312
RV C + GG+RFTI+G ++F VL+TNVA G+ +V +KG+RTGW M RNWG NWQ +
Sbjct: 257 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSN 436
Query: 311 ADLRAQPLSFEVTGGRGRTVTAYSVAPADWMF 216
L Q LSF VT GRTVT+ + APA W F
Sbjct: 437 TFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQF 532
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 99.6 bits (211), Expect(2) = 2e-028
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = -1 / +2
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H ++++ A+ ++ + GI+P+ ++RV C + GG+RFTISG +F VL T
Sbjct: 11 GGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPT 190
Query: 413 NVAADGEVAAVKVKGSRTG 357
NVAA G V A+ V+GS++G
Sbjct: 191 NVAAAGSVRAMDVRGSKSG 247
Score = 45.5 bits (93), Expect(2) = 2e-028
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -1 / +2
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAP 231
W+ M NWG NW A L Q LSF VT G+T+ V P
Sbjct: 251 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVP 376
>gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D12
5-PRIME, mRNA sequence
Length = 475
Score = 122 bits (262), Expect = 1e-027
Identities = 49/88 (55%), Positives = 60/88 (68%)
Frame = -1 / +3
Query: 452 ISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVT 273
I+G ++F VL+TNVA G+ +V +KG+RTGW M RNWG NWQ + L Q LSF VT
Sbjct: 12 INGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVT 191
Query: 272 GGRGRTVTAYSVAPADWMFAQTFEGKQF 189
GRTVT+ + APA W F QTFEG QF
Sbjct: 192 SSDGRTVTSNAAAPAGWQFGQTFEGAQF 275
>gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d22 3', mRNA sequence
Length = 563
Score = 117 bits (251), Expect = 4e-026
Identities = 46/85 (54%), Positives = 60/85 (70%)
Frame = -1 / -1
Query: 458 FTISGSAHFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFE 279
FT++G +F VL++NV G + +V +KGSRTGW+PM RNWG NWQ +A L Q LSF+
Sbjct: 560 FTVNGHDYFELVLVSNVGGVGSIRSVSIKGSRTGWMPMSRNWGVNWQSNALLSGQSLSFQ 381
Query: 278 VTGGRGRTVTAYSVAPADWMFAQTF 204
VT G+T+T +VAPA W F QTF
Sbjct: 380 VTSTDGQTITFPNVAPAGWGFGQTF 306
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 87.7 bits (185), Expect(2) = 2e-025
Identities = 32/76 (42%), Positives = 53/76 (69%)
Frame = -1 / +1
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H ++++ A+ ++ + GI+PV ++RV C + GG+RF ++G +F VL++
Sbjct: 247 GGWCNPPRPHFDMAQPAWEKIGVYRGGIIPVMYQRVPCVKRGGVRFKMNGHDYFNLVLVS 426
Query: 413 NVAADGEVAAVKVKGS 366
NVAA G + ++ VK S
Sbjct: 427 NVAAAGSIQSMDVKCS 474
Score = 47.3 bits (97), Expect(2) = 2e-025
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -1 / +1
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTV 252
W+PM RNWG NW A+L + L+F +T G T+
Sbjct: 487 WMPMARNWGANWHSLANLTGKMLAFRLTNSDGHTL 591
>gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. vulgare cDNA clone HF16A18
5-PRIME, mRNA sequence
Length = 535
Score = 115 bits (245), Expect = 3e-025
Identities = 42/79 (53%), Positives = 57/79 (72%)
Frame = -1 / -1
Query: 425 VLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTA 246
VLI+NV G+V +VK+KG+ +GW+ MGRNWGQ W + DL QP+SFE+T G T+T
Sbjct: 535 VLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTN 356
Query: 245 YSVAPADWMFAQTFEGKQF 189
++V P DW F +T+ GKQF
Sbjct: 355 FNVVPKDWEFGKTYTGKQF 299
>gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01B01
5-PRIME, mRNA sequence
Length = 685
Score = 111 bits (237), Expect = 3e-024
Identities = 44/76 (57%), Positives = 51/76 (67%)
Frame = -1 / +2
Query: 416 TNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSV 237
TNVA G+ +V +KG+RTGW M RNWG NWQ + L Q LSF VT GRTVT+ +
Sbjct: 2 TNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAA 181
Query: 236 APADWMFAQTFEGKQF 189
APA W F QTFEG QF
Sbjct: 182 APAGWQFGQTFEGAQF 229
>gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C12
5-PRIME, mRNA sequence
Length = 561
Score = 71.2 bits (149), Expect(2) = 5e-024
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = -1 / +3
Query: 521 KAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTG 357
+ GI+P+ ++RV C + GG+RFTISG +F VL TNVAA G V A+ V+GS++G
Sbjct: 15 RGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSG 179
Score = 59.3 bits (123), Expect(2) = 5e-024
Identities = 24/51 (47%), Positives = 27/51 (52%)
Frame = -1 / +3
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTF 204
W+ M NWG NW A L Q LSF VT G+T+ V P W F QTF
Sbjct: 183 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTF 335
>gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d22 5', mRNA sequence
Length = 587
Score = 109 bits (233), Expect = 1e-023
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = -1 / +3
Query: 437 HFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGR 258
+F VL++NV G + +V +KGSRTGW+PM RNWG NWQ +A L Q LSF+VT G+
Sbjct: 24 YFELVLVSNVGGVGSIRSVSIKGSRTGWMPMSRNWGVNWQSNALLSGQSLSFQVTSTDGQ 203
Query: 257 TVTAYSVAPADWMFAQTF 204
T+T +VAPA W F QTF
Sbjct: 204 TITFPNVAPAGWGFGQTF 257
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 109 bits (233), Expect = 1e-023
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = -1 / +3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR+H ++S+ A+ +A +AGIVPV ++RV C R+GGMRFTI+G+ +F V +
Sbjct: 378 GGWCNPPRQHFDMSQPAWETIAIYQAGIVPVNYKRVPCQRSGGMRFTINGNDYFELVTVA 557
Query: 413 NVAADGEVAAVKVKGSRTGWIPM 345
NV G V+ + +KGS+T W+ M
Sbjct: 558 NVGGSGVVSQMWIKGSKTDWMVM 626
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 107 bits (228), Expect = 6e-023
Identities = 40/75 (53%), Positives = 57/75 (76%)
Frame = -1 / +3
Query: 593 GGWCNFPREHLELSEAAFLRVAKAKAGIVPVQFRRVSCDRAGGMRFTISGSAHFLQVLIT 414
GGWCN PR H +++E A+L++ +AGIVPV +RRV C + GGMRFTI+G ++F VL+T
Sbjct: 408 GGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVT 587
Query: 413 NVAADGEVAAVKVKG 369
NVA G+V +V ++G
Sbjct: 588 NVAGAGDVQSVSIRG 632
>gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 3', mRNA sequence
Length = 710
Score = 77.6 bits (163), Expect(2) = 3e-022
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = -1 / -1
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTFEGKQF 189
W + RNWGQNWQ +A L Q LSF VT G G++V + + P W F QTF G QF
Sbjct: 596 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 429
Score = 46.9 bits (96), Expect(2) = 3e-022
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -1 / -1
Query: 467 GMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRT 360
G+RFTI+G ++F VL+TNV G+V AV VK +R+
Sbjct: 710 GIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRS 603
>emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragment; clone MWG2088.uni
Length = 363
Score = 62.5 bits (130), Expect(2) = 1e-021
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = -1 / -1
Query: 503 VQFRRVSCDRAGGMRFTISGSAHFLQVLITNVAADGEVAAVKVKGSRTG 357
V F RV C + GG+RFTISG +F VL TNVAA G V A+ V+GS++G
Sbjct: 312 VAFGRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSG 166
Score = 59.3 bits (123), Expect(2) = 1e-021
Identities = 24/51 (47%), Positives = 27/51 (52%)
Frame = -1 / -1
Query: 356 WIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMFAQTF 204
W+ M NWG NW A L Q LSF VT G+T+ V P W F QTF
Sbjct: 162 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTF 10
>gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020C04f, mRNA sequence
Length = 906
Score = 100 bits (214), Expect = 5e-021
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = -1 / +2
Query: 395 EVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRAQPLSFEVTGGRGRTVTAYSVAPADWMF 216
++ KGS TGW+PM RNWGQNWQ +A L Q LSF VT RT T+++ AP +W F
Sbjct: 2 DLVRASAKGSSTGWMPMSRNWGQNWQSNAMLVGQTLSFRVTASDRRTSTSWNAAPNNWRF 181
Query: 215 AQTFEGKQFAE* 180
QTFEGK F +*
Sbjct: 182 GQTFEGKNFKD* 217
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 217,098,712
Number of Sequences: 312970
Number of extensions: 2794599
Number of successful extensions: 60654
Number of sequences better than 1.0e-020: 52
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6235256223
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)