TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591032.2.1
(735 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. v... 288 3e-079
gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. v... 243 7e-067
gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. v... 243 1e-065
gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. v... 245 2e-064
gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. v... 245 2e-064
gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. v... 245 2e-064
gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. v... 242 2e-063
gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. v... 191 4e-050
gb|AJ462548.1|AJ462548 AJ462548 S00002 Hordeum vulgare subs... 177 5e-047
gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa... 178 4e-046
gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedl... 180 9e-045
gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA li... 178 2e-044
gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Libr... 171 5e-042
gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA li... 171 5e-042
gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. v... 171 5e-042
gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. v... 160 3e-041
gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedl... 167 7e-041
gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA li... 166 1e-040
gb|BF254638.2|BF254638 HVSMEf0004J12f Hordeum vulgare seedl... 162 2e-039
gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA li... 159 1e-038
gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA li... 152 2e-036
gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA li... 152 2e-036
gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA li... 152 2e-036
gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA li... 136 2e-031
gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA li... 128 4e-029
gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. v... 125 3e-028
gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA li... 124 6e-028
gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA li... 124 6e-028
gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subs... 116 2e-025
gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. v... 112 2e-024
>gb|BQ660212.1|BQ660212 HI01I09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01I09
3-PRIME, mRNA sequence
Length = 677
Score = 288 bits (624), Expect(2) = 3e-079
Identities = 112/126 (88%), Positives = 119/126 (94%)
Frame = -2 / -3
Query: 698 FVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRF 519
FVGTHEYLAPEIIKGEGHGSAVDWWTFG+FLYELLFGKTPFKGS NRATLFNV+GQ LRF
Sbjct: 675 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRF 496
Query: 518 PEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKP 339
PE P V F+ARDLIRGLL+KEPQ RLAYKRGATEIKQHPFFEGVNWALIRCA+PP++PKP
Sbjct: 495 PESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKP 316
Query: 338 VEIERP 321
VEI RP
Sbjct: 315 VEIPRP 298
Score = 204 bits (440), Expect = 4e-052
Identities = 88/126 (69%), Positives = 95/126 (75%)
Frame = +1 / +2
Query: 322 GLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKL 501
G ISTG G SGG+AHL++AQ TPSK GCC ISVAPRL*A+RC GS S PL+RSLA K
Sbjct: 299 GRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRCCGSLISNPLMRSLAAKP 478
Query: 502 TAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARY 681
T G SG WP TLNSVA +PL GV P SSYKN PKVHQSTALP PSP MISGA+Y
Sbjct: 479 TTGDSGNLRGWPTTLNSVALFPEPLNGVLPKRSSYKNMPKVHQSTALPCPSPFMISGAKY 658
Query: 682 SCVPTN 699
S VPTN
Sbjct: 659 SWVPTN 676
Score = 26.7 bits (52), Expect(2) = 3e-079
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 260 QKGVDGYLEFGFF*Q 216
+KG D YLEF FF*+
Sbjct: 261 EKGPDNYLEFDFF*R 217
>gb|CB874708.1|CB874708 HX06B10w HX Hordeum vulgare subsp. vulgare cDNA clone HX06B10
3-PRIME, mRNA sequence
Length = 585
Score = 243 bits (526), Expect(2) = 7e-067
Identities = 98/106 (92%), Positives = 100/106 (94%)
Frame = -2 / -2
Query: 641 SAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLV 462
SAVDWWTFG+FLYELLFG TPFKGS NRATLFNVIGQ LRFPEYP VSFSARDLIRGLLV
Sbjct: 584 SAVDWWTFGIFLYELLFGXTPFKGSGNRATLFNVIGQPLRFPEYPVVSFSARDLIRGLLV 405
Query: 461 KEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIER 324
KEPQQRL KRGATEIKQHPFFEGVNWALIRCASPPEVPKPV+IER
Sbjct: 404 KEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVDIER 267
Score = 202 bits (436), Expect(2) = 3e-055
Identities = 86/106 (81%), Positives = 92/106 (86%)
Frame = +1 / +1
Query: 325 LSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLT 504
LSISTGFGTSGGLA ++AQFTPSK GCC ISVAPRL +RCWGS TSRPLI+SLAEKLT
Sbjct: 268 LSISTGFGTSGGLAQRINAQFTPSKNGCCFISVAPRLQPNRCWGSLTSRPLIKSLAEKLT 447
Query: 505 AGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTAL 642
GYSGKR+ PMTLNSVARL +PLKGV PN SSYKN PKVHQSTAL
Sbjct: 448 TGYSGKRNG*PMTLNSVARLPEPLKGVLPNRSSYKNIPKVHQSTAL 585
Score = 104 bits (222), Expect(2) = 4e-025
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = -1 / -1
Query: 630 LVDLRGILVRAAVREDAFQGIQQPGHAVQCHWPAAALPGVPGRQLLGEGSDQGSACEGAP 451
LVDL IL+RA+VR+ FQ + P VQCH A A P +P +LL + ++G C GAP
Sbjct: 573 LVDLWYILIRASVRQXTFQRFR*PSDTVQCHRSAVAFPRIPSCELLSKRFNKGPTC*GAP 394
Query: 450 ATAGLQAWSHGDQAASLL*GRELGAHKVRKPTGGTKAC 337
T GL AW H D+ AS+ *G ELG + +P+ G++AC
Sbjct: 393 TTVGL*AWCH*DKTASIF*GCELGVDTLCEPSRGSEAC 280
Score = 96.4 bits (204), Expect(2) = 2e-021
Identities = 52/104 (50%), Positives = 64/104 (61%)
Frame = +3 / +3
Query: 324 PLDLDRLWYLRWACAPYERPIHALKEGMLLDLRGSTLVGQPLLGLLHKQTPDQIPRREAD 503
PL+++RL L A Y+RPIH LK+ ML L G+TL QPLLGLL+K P I EA
Sbjct: 267 PLNINRLRNLWRARTAYQRPIHTLKKWMLFYLSGTTLTTQPLLGLLNK*APY*ISC*EAH 446
Query: 504 GRVLREAQLLANDIEQRGPVAGSLERRLPEQQLVQEYPEGPPVD 635
V E Q L +DIEQ V + ER EQ+LV EY +GPPV+
Sbjct: 447 NWVFWETQRLTDDIEQCRSVT*TFERCXAEQKLV*EYTKGPPVN 578
Score = 32.7 bits (65), Expect(2) = 3e-055
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3 / +3
Query: 189 TSSVKKTTCLLEETKLQVAVDTFLGCTN 272
T+ K T C L+E KL + V FLGCT+
Sbjct: 135 TNGKK*TFCSLKEIKL*IVVRAFLGCTS 218
Score = 30.4 bits (60), Expect(2) = 7e-067
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1 / -1
Query: 270 WCTPERCRRLLGVWFLLANMWF 205
WC PER +L V FLL N F
Sbjct: 216 WCIPERLGQLFRV*FLLVNRMF 151
Score = 29.9 bits (59), Expect(2) = 4e-025
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / -2
Query: 260 QKGVDGYLEFGFF*QTCGFFYTGC 189
QKG D YLEF FF* T F+ C
Sbjct: 206 QKGSDNYLEFDFF**TECSFFPIC 135
Score = 25.4 bits (49), Expect(2) = 2e-021
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2 / +2
Query: 200 KKNHMFARRNQTPSSRRHLSGV 265
K N +F +RNQT +S LSG+
Sbjct: 146 KMNILFTKRNQTLNSCPSLSGM 211
>gb|BU995645.1|BU995645 HM10O13r HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
5-PRIME, mRNA sequence
Length = 617
Score = 243 bits (525), Expect(2) = 1e-065
Identities = 94/108 (87%), Positives = 101/108 (93%)
Frame = -2 / +3
Query: 644 GSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLL 465
GSAVDWWTFG+FLYELLFGKTPFKGS NRATLFNV+GQ LRFPE P V F+ARDLIRGLL
Sbjct: 36 GSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLL 215
Query: 464 VKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERP 321
+KEPQ RLAYKRGATEIKQHPFFEGVNWALIRCA+PP++PKPVEI RP
Sbjct: 216 IKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEIPRP 359
Score = 171 bits (368), Expect = 4e-042
Identities = 74/108 (68%), Positives = 80/108 (74%)
Frame = +1 / -2
Query: 322 GLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKL 501
G ISTG G SGG+AHL++AQ TPSK GCC ISVAPRL*A+RC GS S PL+RSLA K
Sbjct: 358 GRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRCCGSLISNPLMRSLAAKP 179
Query: 502 TAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALP 645
T G SG WP TLNSVA +PL GV P SSYKN PKVHQSTALP
Sbjct: 178 TTGDSGNLRGWPTTLNSVALFPEPLNGVLPKRSSYKNMPKVHQSTALP 35
Score = 26.7 bits (52), Expect(2) = 1e-065
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 260 QKGVDGYLEFGFF*Q 216
+KG D YLEF FF*+
Sbjct: 396 EKGPDNYLEFDFF*R 440
>gb|BQ470446.1|BQ470446 HX03A05r HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
5-PRIME, mRNA sequence
Length = 666
Score = 245 bits (530), Expect = 2e-064
Identities = 93/133 (69%), Positives = 113/133 (84%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+ EP+DARS SFVGTHEYLAPEII+G+GHGS+VDWWT G+FLYELL+GKTPF+G N
Sbjct: 113 LVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDE 292
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+ Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWAL
Sbjct: 293 TLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWAL 472
Query: 374 IRCASPPEVPKPV 336
IR +PPE PK +
Sbjct: 473 IRWTAPPETPKSI 511
Score = 172 bits (371), Expect = 1e-042
Identities = 82/131 (62%), Positives = 89/131 (67%)
Frame = +1 / -1
Query: 343 FGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSGK 522
FG SGG + AQF P KKGC LIS AP L SRC GSFTS PLIRS A LTAG SG
Sbjct: 504 FGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGN 325
Query: 523 RSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTND 702
S T SV+ L PL GV P S+S + P+VHQST LPWPSPLMISGARYS VPTN+
Sbjct: 324 FSPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNE 145
Query: 703 IDRASLGSAMS 735
D AS+GS S
Sbjct: 144 FDLASVGSTTS 112
Score = 102 bits (218), Expect = 2e-021
Identities = 55/116 (47%), Positives = 65/116 (56%)
Frame = -1 / +1
Query: 726 RAQRRTVDVVRWDARVPGPRDHQRRGPWQRRRLVDLRGILVRAAVREDAFQGIQQPGHAV 547
R R V + WD VP P DHQRR PWQ RRLVD + +R A+ +D QG Q +
Sbjct: 121 RTD*REVKFICWDP*VPCPGDHQRRWPWQLRRLVDSWDLSLRIALWQDTIQGTWQ**NTY 300
Query: 546 QCHWPAAALPGVPGRQLLGEGSDQGSACEGAPATAGLQAWSHGDQAASLL*GRELG 379
+C A +P P +L G SDQ ACEGA A A L+ S DQAASLL ELG
Sbjct: 301 KCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELG 468
>gb|BQ470603.1|BQ470603 HX03H14r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H14
5-PRIME, mRNA sequence
Length = 629
Score = 245 bits (530), Expect = 2e-064
Identities = 93/133 (69%), Positives = 113/133 (84%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+ EP+DARS SFVGTHEYLAPEII+G+GHGS+VDWWT G+FLYELL+GKTPF+G N
Sbjct: 113 LVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDE 292
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+ Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWAL
Sbjct: 293 TLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWAL 472
Query: 374 IRCASPPEVPKPV 336
IR +PPE PK +
Sbjct: 473 IRWTAPPETPKSI 511
Score = 172 bits (371), Expect = 1e-042
Identities = 82/131 (62%), Positives = 89/131 (67%)
Frame = +1 / -3
Query: 343 FGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSGK 522
FG SGG + AQF P KKGC LIS AP L SRC GSFTS PLIRS A LTAG SG
Sbjct: 504 FGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGN 325
Query: 523 RSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTND 702
S T SV+ L PL GV P S+S + P+VHQST LPWPSPLMISGARYS VPTN+
Sbjct: 324 FSPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNE 145
Query: 703 IDRASLGSAMS 735
D AS+GS S
Sbjct: 144 FDLASVGSTTS 112
Score = 102 bits (218), Expect = 2e-021
Identities = 55/116 (47%), Positives = 65/116 (56%)
Frame = -1 / +1
Query: 726 RAQRRTVDVVRWDARVPGPRDHQRRGPWQRRRLVDLRGILVRAAVREDAFQGIQQPGHAV 547
R R V + WD VP P DHQRR PWQ RRLVD + +R A+ +D QG Q +
Sbjct: 121 RTD*REVKFICWDP*VPCPGDHQRRWPWQLRRLVDSWDLSLRIALWQDTIQGTWQ**NTY 300
Query: 546 QCHWPAAALPGVPGRQLLGEGSDQGSACEGAPATAGLQAWSHGDQAASLL*GRELG 379
+C A +P P +L G SDQ ACEGA A A L+ S DQAASLL ELG
Sbjct: 301 KCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELG 468
>gb|CA007256.1|CA007256 HU07F09r HU Hordeum vulgare subsp. vulgare cDNA clone HU07F09
5-PRIME, mRNA sequence
Length = 592
Score = 245 bits (530), Expect = 2e-064
Identities = 93/133 (69%), Positives = 113/133 (84%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+ EP+DARS SFVGTHEYLAPEII+G+GHGS+VDWWT G+FLYELL+GKTPF+G N
Sbjct: 50 LVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDE 229
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+ Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWAL
Sbjct: 230 TLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWAL 409
Query: 374 IRCASPPEVPKPV 336
IR +PPE PK +
Sbjct: 410 IRWTAPPETPKSI 448
Score = 172 bits (371), Expect = 1e-042
Identities = 82/131 (62%), Positives = 89/131 (67%)
Frame = +1 / -2
Query: 343 FGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSGK 522
FG SGG + AQF P KKGC LIS AP L SRC GSFTS PLIRS A LTAG SG
Sbjct: 441 FGVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGN 262
Query: 523 RSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTND 702
S T SV+ L PL GV P S+S + P+VHQST LPWPSPLMISGARYS VPTN+
Sbjct: 261 FSPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNE 82
Query: 703 IDRASLGSAMS 735
D AS+GS S
Sbjct: 81 FDLASVGSTTS 49
Score = 102 bits (218), Expect = 2e-021
Identities = 55/116 (47%), Positives = 65/116 (56%)
Frame = -1 / +1
Query: 726 RAQRRTVDVVRWDARVPGPRDHQRRGPWQRRRLVDLRGILVRAAVREDAFQGIQQPGHAV 547
R R V + WD VP P DHQRR PWQ RRLVD + +R A+ +D QG Q +
Sbjct: 58 RTD*REVKFICWDP*VPCPGDHQRRWPWQLRRLVDSWDLSLRIALWQDTIQGTWQ**NTY 237
Query: 546 QCHWPAAALPGVPGRQLLGEGSDQGSACEGAPATAGLQAWSHGDQAASLL*GRELG 379
+C A +P P +L G SDQ ACEGA A A L+ S DQAASLL ELG
Sbjct: 238 KCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELG 405
>gb|BQ465179.1|BQ465179 HU02N24r HU Hordeum vulgare subsp. vulgare cDNA clone HU02N24
5-PRIME, mRNA sequence
Length = 624
Score = 242 bits (523), Expect = 2e-063
Identities = 92/130 (70%), Positives = 111/130 (85%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+ EP+DARS SFVGTHEYLAPEII+G+GHGS+VDWWT G+FLYELL+GKTPF+G N
Sbjct: 215 LVVEPTDARSNSFVGTHEYLAPEIIRGDGHGSSVDWWTLGIFLYELLYGKTPFRGPGNDE 394
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+ Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWAL
Sbjct: 395 TLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWAL 574
Query: 374 IRCASPPEVP 345
IR +PPE P
Sbjct: 575 IRWTAPPETP 604
Score = 170 bits (365), Expect = 1e-041
Identities = 81/130 (62%), Positives = 88/130 (67%)
Frame = +1 / -1
Query: 346 GTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSGKR 525
G SGG + AQF P KKGC LIS AP L SRC GSFTS PLIRS A LTAG SG
Sbjct: 603 GVSGGAVQRIKAQFRPWKKGCRLISAAPFLEPSRCSGSFTSNPLIRSRAW*LTAGLSGNF 424
Query: 526 SCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTNDI 705
S T SV+ L PL GV P S+S + P+VHQST LPWPSPLMISGARYS VPTN+
Sbjct: 423 SPCETTFVSVSSLPGPLNGVLP*SNS*RKIPRVHQSTELPWPSPLMISGARYSWVPTNEF 244
Query: 706 DRASLGSAMS 735
D AS+GS S
Sbjct: 243 DLASVGSTTS 214
Score = 102 bits (218), Expect = 2e-021
Identities = 55/116 (47%), Positives = 65/116 (56%)
Frame = -1 / +1
Query: 726 RAQRRTVDVVRWDARVPGPRDHQRRGPWQRRRLVDLRGILVRAAVREDAFQGIQQPGHAV 547
R R V + WD VP P DHQRR PWQ RRLVD + +R A+ +D QG Q +
Sbjct: 223 RTD*REVKFICWDP*VPCPGDHQRRWPWQLRRLVDSWDLSLRIALWQDTIQGTWQ**NTY 402
Query: 546 QCHWPAAALPGVPGRQLLGEGSDQGSACEGAPATAGLQAWSHGDQAASLL*GRELG 379
+C A +P P +L G SDQ ACEGA A A L+ S DQAASLL ELG
Sbjct: 403 KCGLTGAEVP**PSCELPGSRSDQRVACEGARAPARLEERSCRDQAASLLPRPELG 570
>gb|CB881798.1|CB881798 HM10O13w HM Hordeum vulgare subsp. vulgare cDNA clone HM10O13
3-PRIME, mRNA sequence
Length = 589
Score = 191 bits (412), Expect(2) = 4e-050
Identities = 75/88 (85%), Positives = 81/88 (92%)
Frame = -2 / -2
Query: 584 TPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQH 405
TPFKGS NRATLFNV+GQ LRFPE P V F+ARDLIRGLL+KEPQ RLAYKRGATEIKQH
Sbjct: 588 TPFKGSGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQH 409
Query: 404 PFFEGVNWALIRCASPPEVPKPVEIERP 321
PFFEGVNWALIRCA+PP++PKPVEI RP
Sbjct: 408 PFFEGVNWALIRCATPPDIPKPVEIPRP 325
Score = 133 bits (284), Expect = 1e-030
Identities = 58/88 (65%), Positives = 64/88 (72%)
Frame = +1 / +2
Query: 322 GLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKL 501
G ISTG G SGG+AHL++AQ TPSK GCC ISVAPRL*A+RC GS S PL+RSLA K
Sbjct: 326 GRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRCCGSLISNPLMRSLAAKP 505
Query: 502 TAGYSGKRSCWPMTLNSVARLLDPLKGV 585
T G SG WP TLNSVA +PL GV
Sbjct: 506 TTGDSGNLRGWPTTLNSVALFPEPLNGV 589
Score = 26.7 bits (52), Expect(2) = 4e-050
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 260 QKGVDGYLEFGFF*Q 216
+KG D YLEF FF*+
Sbjct: 288 EKGPDNYLEFDFF*R 244
>gb|AJ462548.1|AJ462548 AJ462548 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081A03F1, mRNA sequence
Length = 360
Score = 177 bits (381), Expect(2) = 5e-047
Identities = 73/78 (93%), Positives = 74/78 (94%)
Frame = -2 / +1
Query: 557 ATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWA 378
ATLFNVIGQ LRFPEYP VSFSARDLIRGLLVKEPQQRL KRGATEIKQHPFFEGVNWA
Sbjct: 1 ATLFNVIGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWA 180
Query: 377 LIRCASPPEVPKPVEIER 324
LIRCASPPEVPKPV+IER
Sbjct: 181 LIRCASPPEVPKPVDIER 234
Score = 147 bits (315), Expect(2) = 4e-038
Identities = 62/77 (80%), Positives = 67/77 (87%)
Frame = +1 / -2
Query: 325 LSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLT 504
LSISTGFGTSGGLA ++AQFTPSK GCC ISVAPRL +RCWGS TSRPLI+SLAEKLT
Sbjct: 233 LSISTGFGTSGGLAQRINAQFTPSKNGCCFISVAPRLQPNRCWGSLTSRPLIKSLAEKLT 54
Query: 505 AGYSGKRSCWPMTLNSV 555
GYSGKR+ PMTLNSV
Sbjct: 53 TGYSGKRNG*PMTLNSV 3
Score = 30.9 bits (61), Expect(2) = 4e-038
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3 / -1
Query: 201 KKTTCLLEETKLQVAVDTFLGCTN 272
K T C L+E KL + V FLGCT+
Sbjct: 354 K*TFCSLKEIKL*IVVRAFLGCTS 283
Score = 30.4 bits (60), Expect(2) = 5e-047
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1 / +3
Query: 270 WCTPERCRRLLGVWFLLANMWF 205
WC PER +L V FLL N F
Sbjct: 285 WCIPERLGQLFRV*FLLVNRMF 350
>gb|BG415060.1|BG415060 HVSMEk0004P24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004P24f, mRNA sequence
Length = 632
Score = 178 bits (383), Expect(2) = 4e-046
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = -2 / +3
Query: 569 SSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEG 390
S NRATLFNV+GQ LRFPE P V F+ARDLIRGLL+KEPQ RLAYKRGATEIKQHPFFEG
Sbjct: 3 SGNRATLFNVVGQPLRFPESPVVGFAARDLIRGLLIKEPQHRLAYKRGATEIKQHPFFEG 182
Query: 389 VNWALIRCASPPEVPKPVEIERP 321
VNWALIRCA+PP++PKPVEI RP
Sbjct: 183 VNWALIRCATPPDIPKPVEIPRP 251
Score = 124 bits (266), Expect = 4e-028
Identities = 54/79 (68%), Positives = 59/79 (74%)
Frame = +1 / -2
Query: 322 GLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKL 501
G ISTG G SGG+AHL++AQ TPSK GCC ISVAPRL*A+RC GS S PL+RSLA K
Sbjct: 250 GRGISTGLGISGGVAHLINAQLTPSKNGCCFISVAPRL*ANRCCGSLISNPLMRSLAAKP 71
Query: 502 TAGYSGKRSCWPMTLNSVA 558
T G SG WP TLNSVA
Sbjct: 70 TTGDSGNLRGWPTTLNSVA 14
Score = 26.7 bits (52), Expect(2) = 4e-046
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 260 QKGVDGYLEFGFF*Q 216
+KG D YLEF FF*+
Sbjct: 288 EKGPDNYLEFDFF*R 332
>gb|BF622824.2|BF622824 HVSMEa0009C21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009C21f, mRNA sequence
Length = 721
Score = 180 bits (387), Expect = 9e-045
Identities = 74/121 (61%), Positives = 85/121 (70%)
Frame = -2 / +3
Query: 584 TPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQH 405
TPFKGS NRATLFNV+GQQL+FPE P+ S++ RDLIRGLL KEPQQRL KRGATEIKQH
Sbjct: 3 TPFKGSGNRATLFNVVGQQLKFPESPSTSYAGRDLIRGLLAKEPQQRLGVKRGATEIKQH 182
Query: 404 PFFEGVNWALIRCASPPEVPKPVEIERPSNHXXXXXXXXXXXXXXXXPQKGVDGYLEFGF 225
PFFEGVNWALIRC++PPEVP+PV+ + P + K YL F
Sbjct: 183 PFFEGVNWALIRCSTPPEVPRPVKADLPVKYGVSEAVASTNKRVVGPDAKSGGKYLAFKS 362
Query: 224 F 222
F
Sbjct: 363 F 365
Score = 124 bits (265), Expect = 6e-028
Identities = 60/106 (56%), Positives = 63/106 (59%)
Frame = +1 / -1
Query: 268 PTEASSAAAPDGDEG*FDGLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASR 447
PT A D F G S TG GTSGG+ H M AQFTPSK GCCLISVAP R
Sbjct: 319 PTTLLLVLATASDTPYFTGRSALTGLGTSGGVLHRMRAQFTPSKNGCCLISVAPLFTPRR 140
Query: 448 CWGSFTSRPLIRSLAEKLTAGYSGKRSCWPMTLNSVARLLDPLKGV 585
C GS PL+RSL L G SG SC P TLN+VARL DPL GV
Sbjct: 139 CCGSLARSPLMRSLPA*LVDGDSGNFSC*PTTLNNVARLPDPLNGV 2
>gb|BJ544669.1|BJ544669 BJ544669 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34b18 5', mRNA sequence
Length = 639
Score = 178 bits (384), Expect = 2e-044
Identities = 64/126 (50%), Positives = 89/126 (70%)
Frame = -2 / +3
Query: 707 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQ 528
S SFVGT EY+APE+I G GH SA+DWW G+ LYE+L+G+TPF+G + + T +N++ +
Sbjct: 27 SNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKD 206
Query: 527 LRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEV 348
L FP VS A+ LI GLL ++P R+ GA +IK+HPFFE + W LIRC SPPE+
Sbjct: 207 LTFPSSIPVSLEAKQLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPEL 386
Query: 347 PKPVEI 330
P+++
Sbjct: 387 DVPLKL 404
Score = 101 bits (216), Expect = 4e-021
Identities = 56/123 (45%), Positives = 64/123 (52%)
Frame = +1 / -3
Query: 340 GFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSG 519
G +SGGL +S Q SK GC LIS AP R GS S P I A +LT G
Sbjct: 394 GTSSSGGLMQRISGQ*MSSKNGCSLISFAPVFEPMREEGSL*SSPWISCFASRLTGMLLG 215
Query: 520 KRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTN 699
L +V L P KGV P S SY P+ HQS AL P+P+M SGA YS VPTN
Sbjct: 214 NVRSLCRML*NVFFLFFPRKGVRPYSISYNRIPRAHQSMALVCPAPVMTSGAMYSSVPTN 35
Query: 700 DID 708
+ D
Sbjct: 34 EFD 26
>gb|BE421430.1|BE421430 HWM009.C03 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.C03, mRNA sequence
Length = 832
Score = 171 bits (367), Expect = 5e-042
Identities = 65/124 (52%), Positives = 87/124 (70%)
Frame = -2 / +2
Query: 707 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQ 528
S SFVGT EY+APEII G GH SAVDWW G+ LYE+L+G TPF+G + + T N++ +
Sbjct: 200 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 379
Query: 527 LRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEV 348
+RFP +VS AR LI LL ++P R+ G+ EIKQHPFF G+NWAL+R +PP++
Sbjct: 380 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKL 559
Query: 347 PKPV 336
P+
Sbjct: 560 DAPL 571
>gb|AV926878.1|AV926878 AV926878 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24k23 5', mRNA sequence
Length = 703
Score = 171 bits (367), Expect = 5e-042
Identities = 65/124 (52%), Positives = 87/124 (70%)
Frame = -2 / +1
Query: 707 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQ 528
S SFVGT EY+APEII G GH SAVDWW G+ LYE+L+G TPF+G + + T N++ +
Sbjct: 139 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 318
Query: 527 LRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEV 348
+RFP +VS AR LI LL ++P R+ G+ EIKQHPFF G+NWAL+R +PP++
Sbjct: 319 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKL 498
Query: 347 PKPV 336
P+
Sbjct: 499 DAPL 510
>gb|BU997959.1|BU997959 HI09I16r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I16
5-PRIME, mRNA sequence
Length = 665
Score = 171 bits (367), Expect = 5e-042
Identities = 65/124 (52%), Positives = 87/124 (70%)
Frame = -2 / +2
Query: 707 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQ 528
S SFVGT EY+APEII G GH SAVDWW G+ LYE+L+G TPF+G + + T N++ +
Sbjct: 155 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 334
Query: 527 LRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEV 348
+RFP +VS AR LI LL ++P R+ G+ EIKQHPFF G+NWAL+R +PP++
Sbjct: 335 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKL 514
Query: 347 PKPV 336
P+
Sbjct: 515 DAPL 526
>gb|CB875785.1|CB875785 HX09F12w HX Hordeum vulgare subsp. vulgare cDNA clone HX09F12
3-PRIME, mRNA sequence
Length = 660
Score = 160 bits (344), Expect(2) = 3e-041
Identities = 62/75 (82%), Positives = 70/75 (93%)
Frame = -2 / -1
Query: 551 LFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALI 372
LFNV+GQ LRFPE P VSFSARD+IRGLLVK+PQ RL +KRGATEIKQHPFFEGVNWALI
Sbjct: 660 LFNVVGQPLRFPESPLVSFSARDMIRGLLVKDPQHRLGHKRGATEIKQHPFFEGVNWALI 481
Query: 371 RCASPPEVPKPVEIE 327
RCASPP++PKPVE++
Sbjct: 480 RCASPPDIPKPVELD 436
Score = 123 bits (263), Expect = 1e-027
Identities = 58/89 (65%), Positives = 61/89 (68%)
Frame = +1 / +2
Query: 280 SSAAAPDGDEG*FDGLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGS 459
+ A P D F S STG G SGGLAHL+ AQFTPSKKGCC ISVAPRL SRC GS
Sbjct: 389 AGATFPFADGACFGRQSSSTGLGMSGGLAHLIRAQFTPSKKGCCFISVAPRLWPSRCCGS 568
Query: 460 FTSRPLIRSLAEKLTAGYSGKRSCWPMTL 546
TS PLI SLAEKLT+G SG R P TL
Sbjct: 569 LTSSPLIMSLAEKLTSGDSGNRRG*PTTL 655
Score = 28.1 bits (55), Expect(2) = 3e-041
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2 / -1
Query: 260 QKGVDGYLEFGFF*QTCG 207
QKG D YLEF FF* G
Sbjct: 381 QKGSDNYLEFEFF*PLFG 328
>gb|BF626879.2|BF626879 HVSMEb0001J09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001J09f, mRNA sequence
Length = 780
Score = 167 bits (359), Expect = 7e-041
Identities = 64/124 (51%), Positives = 86/124 (69%)
Frame = -2 / +1
Query: 707 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQ 528
S SFVGT EY+APEII G GH SAVDWW G+ LYE+L+G TPF+G + + T N++ +
Sbjct: 199 SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKD 378
Query: 527 LRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEV 348
+RFP +VS AR LI LL ++P R+ G+ EIKQHPFF G+NWAL+R +P ++
Sbjct: 379 IRFPASISVSLPARQLIYRLLHRDPANRMGSYEGSNEIKQHPFFRGINWALVRGTAPSKL 558
Query: 347 PKPV 336
P+
Sbjct: 559 DAPL 570
>gb|BJ546140.1|BJ546140 BJ546140 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34b18 3', mRNA sequence
Length = 719
Score = 166 bits (357), Expect = 1e-040
Identities = 58/118 (49%), Positives = 83/118 (70%)
Frame = -2 / -3
Query: 683 EYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPA 504
EY+APE+I G GH SA+DWW G+ LYE+L+G+TPF+G + + T +N++ + L FP
Sbjct: 717 EYIAPEVITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIP 538
Query: 503 VSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
VS A+ LI GLL ++P R+ GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 537 VSLEAKQLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 364
>gb|BF254638.2|BF254638 HVSMEf0004J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004J12f, mRNA sequence
Length = 816
Score = 162 bits (348), Expect = 2e-039
Identities = 69/105 (65%), Positives = 80/105 (76%)
Frame = -2 / +1
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+AEP+DARSMSFVGTHEYLAPEIIKGEGHGSAV+WWT G+FL EL+ G+T FKGS NRA
Sbjct: 184 LVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVNWWTLGIFLDELVLGETAFKGSGNRA 363
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGAT 420
L NV GQ LRFPE P +ARDLI+ + V P + + AT
Sbjct: 364 ALLNVGGQPLRFPE*PEEGRAARDLIKRVQVSVPPRCRTCRHTAT 498
Score = 126 bits (269), Expect = 2e-028
Identities = 57/94 (60%), Positives = 64/94 (68%)
Frame = +1 / -2
Query: 454 GSFTSRPLIRSLAEKLTAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQS 633
G+ T IRSLA ++GYSG WP T NS A +PL V P +SS KN PKVHQ
Sbjct: 464 GTLTCTLFIRSLAALPSSGYSGNLRGWPPTFNSAALFPEPLNAVSPKTSSSKNMPKVHQF 285
Query: 634 TALPWPSPLMISGARYSCVPTNDIDRASLGSAMS 735
TALP PSP MISGA+YS VPTNDID AS+GSA S
Sbjct: 284 TALPCPSPFMISGAKYSWVPTNDIDLASVGSATS 183
>gb|AV834352.1|AV834352 AV834352 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags15d19, mRNA sequence
Length = 619
Score = 159 bits (342), Expect = 1e-038
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -2 / -2
Query: 614 VFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAY 435
+FLYELL+GKTPF+G N TL NV+ Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL
Sbjct: 618 IFLYELLYGKTPFRGPGNDETLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGS 439
Query: 434 KRGATEIKQHPFFEGVNWALIRCASPPEVPKPV 336
++GA EIK+HPFF+G+NWALIR +PPE PK +
Sbjct: 438 RKGAAEIKRHPFFQGLNWALIRWTAPPETPKSI 340
>gb|BJ546986.1|BJ546986 BJ546986 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p17 5', mRNA sequence
Length = 624
Score = 152 bits (327), Expect = 2e-036
Identities = 53/112 (47%), Positives = 77/112 (68%)
Frame = -2 / +2
Query: 665 IIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSAR 486
+I G GH SA+DWW G+ LYE+L+G+TPF+G + + T +N++ + L FP VS A+
Sbjct: 29 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 208
Query: 485 DLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
LI GLL ++P R+ GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 209 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 364
>gb|BJ547950.1|BJ547950 BJ547950 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f06 3', mRNA sequence
Length = 671
Score = 152 bits (327), Expect = 2e-036
Identities = 53/112 (47%), Positives = 77/112 (68%)
Frame = -2 / -1
Query: 665 IIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSAR 486
+I G GH SA+DWW G+ LYE+L+G+TPF+G + + T +N++ + L FP VS A+
Sbjct: 656 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 477
Query: 485 DLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
LI GLL ++P R+ GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 476 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 321
>gb|BJ548315.1|BJ548315 BJ548315 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 3', mRNA sequence
Length = 654
Score = 152 bits (327), Expect = 2e-036
Identities = 53/112 (47%), Positives = 77/112 (68%)
Frame = -2 / -2
Query: 665 IIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSAR 486
+I G GH SA+DWW G+ LYE+L+G+TPF+G + + T +N++ + L FP VS A+
Sbjct: 641 VITGAGHTSAIDWWALGILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAK 462
Query: 485 DLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
LI GLL ++P R+ GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 461 QLIHGLLQRDPSSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 306
>gb|BJ546987.1|BJ546987 BJ546987 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal23p18 5', mRNA sequence
Length = 441
Score = 136 bits (291), Expect = 2e-031
Identities = 47/101 (46%), Positives = 69/101 (68%)
Frame = -2 / +1
Query: 632 DWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEP 453
DWW G+ LYE+L+G+TPF+G + + T +N++ + L FP VS A+ LI GLL ++P
Sbjct: 37 DWWALGILLYEMLYGRTPFRGKNRKKTFYNMLHKDLTFPSSIPVSLEAKQLIHGLLQRDP 216
Query: 452 QQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
R+ GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 217 SSRIGSNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 339
>gb|AV919193.1|AV919193 AV919193 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4o22 3', mRNA sequence
Length = 586
Score = 128 bits (274), Expect = 4e-029
Identities = 46/99 (46%), Positives = 67/99 (67%)
Frame = -2 / -3
Query: 632 DWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEP 453
DWW G+ LYE+L+G TPF+G + + T N++ + +RFP +VS AR LI LL ++P
Sbjct: 584 DWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDP 405
Query: 452 QQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPV 336
R+ G+ EIKQHPFF G+NWAL+R +PP++ P+
Sbjct: 404 ANRMGSYEGSNEIKQHPFFRGINWALVRGTAPPKLDAPL 288
>gb|BQ665321.1|BQ665321 HX03A05u HX Hordeum vulgare subsp. vulgare cDNA clone HX03A05
3-PRIME, mRNA sequence
Length = 594
Score = 125 bits (267), Expect = 3e-028
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -2 / -3
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+ Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWAL
Sbjct: 586 TLTNVVSQGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWAL 407
Query: 374 IRCASPPEVPKPV 336
IR +PPE PK +
Sbjct: 406 IRWTAPPETPKSI 368
>gb|AV832731.1|AV832731 AV832731 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal3j22, mRNA
sequence
Length = 476
Score = 124 bits (265), Expect = 6e-028
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = -2 / +3
Query: 617 GVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLA 438
G+ LYE+L+G+TPF+G + + T +N++ + L FP VS A+ LI GLL ++P R+
Sbjct: 60 GILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIG 239
Query: 437 YKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 240 SNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 347
>gb|BJ547677.1|BJ547677 BJ547677 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34l02 5', mRNA sequence
Length = 616
Score = 124 bits (265), Expect = 6e-028
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = -2 / +1
Query: 617 GVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLA 438
G+ LYE+L+G+TPF+G + + T +N++ + L FP VS A+ LI GLL ++P R+
Sbjct: 64 GILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSSRIG 243
Query: 437 YKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEI 330
GA +IK+HPFFE + W LIRC SPPE+ P+++
Sbjct: 244 SNTGANDIKEHPFFEDIYWPLIRCMSPPELDVPLKL 351
>gb|AJ432746.1|AJ432746 AJ432746 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200023G10F1, mRNA sequence
Length = 353
Score = 116 bits (247), Expect = 2e-025
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = -2 / +2
Query: 533 QQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
Q L+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWALIR +PP
Sbjct: 5 QGLKFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPP 184
Query: 353 EVPKPV 336
E PK +
Sbjct: 185 ETPKSI 202
>gb|CA025871.1|CA025871 HZ53G05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53G05
5-PRIME, mRNA sequence
Length = 548
Score = 112 bits (240), Expect = 2e-024
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = -2 / +2
Query: 524 RFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVP 345
+FP+ PAVS+ ARDLIRGLLVKEP+ RL ++GA EIK+HPFF+G+NWALIR +PPE P
Sbjct: 2 KFPDSPAVSYQARDLIRGLLVKEPEHRLGSRKGAAEIKRHPFFQGLNWALIRWTAPPETP 181
Query: 344 KPV 336
K +
Sbjct: 182 KSI 190
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 378,038,960
Number of Sequences: 312970
Number of extensions: 6762580
Number of successful extensions: 98882
Number of sequences better than 1.0e-020: 41
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8186424837
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)