TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2542042.2.1
         (691 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU978120.1|BU978120  HA12J22u HA Hordeum vulgare subsp. v...    71   5e-026
gb|BQ657192.1|BQ657192  HA09F08u HA Hordeum vulgare subsp. v...    71   5e-026
gb|BU966694.1|BU966694  HB02B05r BC Hordeum vulgare subsp. v...    72   2e-024

>gb|BU978120.1|BU978120 HA12J22u HA Hordeum vulgare subsp. vulgare cDNA clone HA12J22
           3-PRIME, mRNA sequence
          Length = 447

 Score = 70.7 bits (148), Expect(2) = 5e-026
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = +2 / -1

                                                   
Query: 326 TAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLW 445
           TAIAMCH NT +WD +YF++L+   GE ICH+MP NY+++
Sbjct: 198 TAIAMCHMNTSDWDTQYFELLDGKHGEPICHYMPTNYIMF 79




 Score = 66.6 bits (139), Expect(2) = 5e-026
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2 / -1

                                              
Query: 212 VVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDG 316
           VVPCHPM +PY V YCH+P +V++LR++L GL DG
Sbjct: 315 VVPCHPMDFPYEVFYCHRPKEVQSLRVQLKGLKDG 211



>gb|BQ657192.1|BQ657192 HA09F08u HA Hordeum vulgare subsp. vulgare cDNA clone HA09F08
           3-PRIME, mRNA sequence
          Length = 404

 Score = 70.7 bits (148), Expect(2) = 5e-026
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = +2 / -2

                                                   
Query: 326 TAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLW 445
           TAIAMCH NT +WD +YF++L+   GE ICH+MP NY+++
Sbjct: 205 TAIAMCHMNTSDWDTQYFELLDGKHGEPICHYMPTNYIMF 86




 Score = 66.6 bits (139), Expect(2) = 5e-026
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2 / -2

                                              
Query: 212 VVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDG 316
           VVPCHPM +PY V YCH+P +V++LR++L GL DG
Sbjct: 322 VVPCHPMDFPYEVFYCHRPKEVQSLRVQLKGLKDG 218



>gb|BU966694.1|BU966694 HB02B05r BC Hordeum vulgare subsp. vulgare cDNA clone HB02B05
           5-PRIME, mRNA sequence
          Length = 438

 Score = 72.1 bits (151), Expect(2) = 2e-024
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = +2 / +1

                                                   
Query: 326 TAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLW 445
           TA AMCH NT +WD++YF++L   RGE ICH+MP NY+++
Sbjct: 235 TATAMCHMNTSDWDEQYFELLGGVRGEPICHYMPTNYIMF 354




 Score = 59.7 bits (124), Expect(2) = 2e-024
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +2 / +1

                                              
Query: 212 VVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDG 316
           VVPCHPM +PY V YCH+P +V++L ++L  L DG
Sbjct: 118 VVPCHPMDFPYEVFYCHRPKEVQSLTVQLKVLEDG 222



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 278,820,774
Number of Sequences: 312970
Number of extensions: 3807190
Number of successful extensions: 44429
Number of sequences better than 1.0e-020: 3
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7550174202
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)