TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ434507.1|AJ434507 AJ434507 S00002 Hordeum vulgare subs... 145 9e-035
gb|BQ465822.1|BQ465822 HU04M16r HU Hordeum vulgare subsp. v... 145 9e-035
gb|BQ664320.1|BQ664320 HV02N15u HV Hordeum vulgare subsp. v... 145 9e-035
gb|CA000360.1|CA000360 HS08G06u HS Hordeum vulgare subsp. v... 145 9e-035
gb|CA010134.1|CA010134 HT11K06u HT Hordeum vulgare subsp. v... 145 9e-035
gb|CA014543.1|CA014543 HT11K06r HT Hordeum vulgare subsp. v... 145 9e-035
gb|CA022994.1|CA022994 HZ44P02r HZ Hordeum vulgare subsp. v... 145 9e-035
gb|CA025075.1|CA025075 HZ51C08r HZ Hordeum vulgare subsp. v... 145 9e-035
gb|CB879699.1|CB879699 HP03F11w HP Hordeum vulgare subsp. v... 145 9e-035
gb|CK125497.1|CK125497 BES1824108m11 BES1824 Hordeum vulgar... 145 9e-035
gb|CA013509.1|CA013509 HT08K23r HT Hordeum vulgare subsp. v... 141 2e-033
>gb|AJ434507.1|AJ434507 AJ434507 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200037H07F1, mRNA sequence
Length = 478
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 109 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 288
Query: 182 D* 187
D*
Sbjct: 289 D* 294
>gb|BQ465822.1|BQ465822 HU04M16r HU Hordeum vulgare subsp. vulgare cDNA clone HU04M16
5-PRIME, mRNA sequence
Length = 594
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 363 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 542
Query: 182 D* 187
D*
Sbjct: 543 D* 548
>gb|BQ664320.1|BQ664320 HV02N15u HV Hordeum vulgare subsp. vulgare cDNA clone HV02N15
3-PRIME, mRNA sequence
Length = 411
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / -1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 345 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 166
Query: 182 D* 187
D*
Sbjct: 165 D* 160
>gb|CA000360.1|CA000360 HS08G06u HS Hordeum vulgare subsp. vulgare cDNA clone HS08G06
3-PRIME, mRNA sequence
Length = 560
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / -3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 345 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 166
Query: 182 D* 187
D*
Sbjct: 165 D* 160
>gb|CA010134.1|CA010134 HT11K06u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K06
3-PRIME, mRNA sequence
Length = 502
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / -1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 349 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 170
Query: 182 D* 187
D*
Sbjct: 169 D* 164
>gb|CA014543.1|CA014543 HT11K06r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K06
5-PRIME, mRNA sequence
Length = 654
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 426 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 605
Query: 182 D* 187
D*
Sbjct: 606 D* 611
>gb|CA022994.1|CA022994 HZ44P02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44P02
5-PRIME, mRNA sequence
Length = 640
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / +2
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 413 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 592
Query: 182 D* 187
D*
Sbjct: 593 D* 598
>gb|CA025075.1|CA025075 HZ51C08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51C08
5-PRIME, mRNA sequence
Length = 599
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 399 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 578
Query: 182 D* 187
D*
Sbjct: 579 D* 584
>gb|CB879699.1|CB879699 HP03F11w HP Hordeum vulgare subsp. vulgare cDNA clone HP03F11
3-PRIME, mRNA sequence
Length = 546
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / -3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 367 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 188
Query: 182 D* 187
D*
Sbjct: 187 D* 182
>gb|CK125497.1|CK125497 BES1824108m11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M118 5-PRIME, mRNA sequence
Length = 763
Score = 145 bits (312), Expect = 9e-035
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVVDHTTHHFK+HDG+TF +E
Sbjct: 424 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVDHTTHHFKEHDGVTFTIE 603
Query: 182 D* 187
D*
Sbjct: 604 D* 609
>gb|CA013509.1|CA013509 HT08K23r HT Hordeum vulgare subsp. vulgare cDNA clone HT08K23
5-PRIME, mRNA sequence
Length = 478
Score = 141 bits (303), Expect = 2e-033
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = +2 / -2
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSGPKFLKL+ GTWHAGPLFKADAVDFYNLELS+TNVV HTTHHFK+HDG+TF +E
Sbjct: 300 CVFRVSGPKFLKLHAGTWHAGPLFKADAVDFYNLELSDTNVVVHTTHHFKEHDGVTFTIE 121
Query: 182 D* 187
D*
Sbjct: 120 D* 115
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 215,494,777
Number of Sequences: 312970
Number of extensions: 3294050
Number of successful extensions: 109015
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 49
effective length of database: 43,042,649
effective search space used: 3830795761
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)