TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.4
(645 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA... 111 5e-024
gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA... 111 5e-024
gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DA... 109 1e-023
gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm libra... 108 3e-023
gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm librar... 108 3e-023
gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm librar... 108 3e-023
gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm librar... 108 3e-023
gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm libra... 108 3e-023
gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. v... 105 2e-022
gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. v... 105 2e-022
gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. v... 105 2e-022
gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. v... 105 2e-022
gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedl... 104 6e-022
gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedl... 104 6e-022
gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. v... 104 6e-022
gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. v... 104 6e-022
gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, n... 104 6e-022
gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, n... 104 6e-022
gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, n... 104 6e-022
gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, n... 104 6e-022
gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 D... 104 6e-022
gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, sal... 104 6e-022
gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. v... 104 6e-022
gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. v... 104 6e-022
gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. v... 104 6e-022
gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. v... 104 6e-022
gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. v... 103 8e-022
gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, n... 102 2e-021
gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. v... 102 2e-021
gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa... 102 2e-021
gb|CV054446.1|CV054446 BNEL10F10 Barley EST endosperm libra... 102 2e-021
gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa... 100 8e-021
gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. v... 100 8e-021
>gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_K08 5', mRNA sequence
Length = 390
Score = 111 bits (236), Expect = 5e-024
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S RF+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 108 TGEMGGPVAVAEARRCESPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 287
Query: 285 *Y 280
Y
Sbjct: 288 RY 293
>gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P21 5', mRNA sequence
Length = 410
Score = 111 bits (236), Expect = 5e-024
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S RF+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 117 TGEMGGPVAVAEARRCESPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 296
Query: 285 *Y 280
Y
Sbjct: 297 RY 302
>gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0010M06f, mRNA sequence
Length = 801
Score = 109 bits (233), Expect = 1e-023
Identities = 40/62 (64%), Positives = 45/62 (72%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+C+S S RF+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 117 TGEMGGPVAVAEARRCQSPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 296
Query: 285 *Y 280
Y
Sbjct: 297 RY 302
>gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112b8 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 108 bits (230), Expect = 3e-023
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -1 / -3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 334 TGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 155
Query: 285 *Y 280
Y
Sbjct: 154 RY 149
>gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL26e6 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 108 bits (230), Expect = 3e-023
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 108 TGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 287
Query: 285 *Y 280
Y
Sbjct: 288 RY 293
>gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL29b5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 108 bits (230), Expect = 3e-023
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 108 TGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 287
Query: 285 *Y 280
Y
Sbjct: 288 RY 293
>gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h3 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 108 bits (230), Expect = 3e-023
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 108 TGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 287
Query: 285 *Y 280
Y
Sbjct: 288 RY 293
>gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL61f11 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 561
Score = 108 bits (230), Expect = 3e-023
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 118 TGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 297
Query: 285 *Y 280
Y
Sbjct: 298 RY 303
>gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. vulgare cDNA clone HB03I09
5-PRIME, mRNA sequence
Length = 488
Score = 105 bits (225), Expect = 2e-022
Identities = 39/62 (62%), Positives = 43/62 (69%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR RCFC C
Sbjct: 121 TGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCATHC 300
Query: 285 *Y 280
Y
Sbjct: 301 RY 306
>gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04L07
5-PRIME, mRNA sequence
Length = 408
Score = 105 bits (225), Expect = 2e-022
Identities = 39/62 (62%), Positives = 43/62 (69%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR RCFC C
Sbjct: 108 TGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCATHC 287
Query: 285 *Y 280
Y
Sbjct: 288 RY 293
>gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. vulgare cDNA clone HB32I22
5-PRIME, mRNA sequence
Length = 448
Score = 105 bits (225), Expect = 2e-022
Identities = 39/62 (62%), Positives = 43/62 (69%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR RCFC C
Sbjct: 124 TGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCATHC 303
Query: 285 *Y 280
Y
Sbjct: 304 RY 309
>gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L17
5-PRIME, mRNA sequence
Length = 376
Score = 105 bits (225), Expect = 2e-022
Identities = 39/62 (62%), Positives = 43/62 (69%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR RCFC C
Sbjct: 76 TGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCATHC 255
Query: 285 *Y 280
Y
Sbjct: 256 RY 261
>gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006K17f, mRNA sequence
Length = 831
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 124 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 303
>gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005M15f, mRNA sequence
Length = 539
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 52 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 231
>gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
5-PRIME, mRNA sequence
Length = 576
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 129 TGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 308
>gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
3-PRIME, mRNA sequence
Length = 587
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / -3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 459 TGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 280
>gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_E10 5', mRNA sequence
Length = 570
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 120 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 299
>gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ001_P04 5', mRNA sequence
Length = 471
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 121 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 300
>gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D12 5', mRNA sequence
Length = 451
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 121 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 300
>gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_E07 5', mRNA sequence
Length = 427
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 121 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 300
>gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_J02 5', mRNA sequence
Length = 548
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 114 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 293
>gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_A12 5', mRNA sequence
Length = 471
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 121 TGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 300
>gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. vulgare cDNA clone HB13B13
5-PRIME, mRNA sequence
Length = 400
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 133 TGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 312
>gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. vulgare cDNA clone HF04L08
5-PRIME, mRNA sequence
Length = 564
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +2
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 74 TGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 253
>gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. vulgare cDNA clone HF06E05
5-PRIME, mRNA sequence
Length = 564
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +2
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 74 TGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 253
>gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. vulgare cDNA clone HT03F21
5-PRIME, mRNA sequence
Length = 402
Score = 104 bits (221), Expect = 6e-022
Identities = 38/60 (63%), Positives = 43/60 (71%)
Frame = -1 / +2
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 131 TGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 310
>gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. vulgare cDNA clone HT06J05
5-PRIME, mRNA sequence
Length = 306
Score = 103 bits (220), Expect = 8e-022
Identities = 38/61 (62%), Positives = 42/61 (68%)
Frame = -1 / +3
Query: 462 GTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC* 283
G GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR RCFC C
Sbjct: 9 GEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCATHCR 188
Query: 282 Y 280
Y
Sbjct: 189 Y 191
>gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_J18 5', mRNA sequence
Length = 419
Score = 102 bits (218), Expect = 2e-021
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR CES+S RF+GPC R +NCANVC T+GF G C+G R RCFCT C
Sbjct: 112 TGELGGPVMVADARTCESRSHRFRGPCVRRSNCANVCKTDGFPDGKCRGFRRRCFCTTHC 291
>gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. vulgare cDNA clone HA28J09
5-PRIME, mRNA sequence
Length = 484
Score = 102 bits (218), Expect = 2e-021
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGP+ + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 124 TGELGGPLIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 303
>gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006F02f, mRNA sequence
Length = 551
Score = 102 bits (217), Expect = 2e-021
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = -1 / +1
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR C+S+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 82 TGELGGPVMVAEARTCKSRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 261
>gb|CV054446.1|CV054446 BNEL10F10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL10F10 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 102 bits (217), Expect = 2e-021
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -1 / -3
Query: 465 TGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
TG GGPV + AR+ ES S F+GPC R NCANVC TEGF GG C+GLR RCFCT C
Sbjct: 334 TGEMGGPVAVAEARRSESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCTTHC 155
>gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017M20f, mRNA sequence
Length = 799
Score = 100 bits (213), Expect = 8e-021
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = -1 / +3
Query: 453 GGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 132 GGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 299
>gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04I05
3-PRIME, mRNA sequence
Length = 424
Score = 100 bits (213), Expect = 8e-021
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = -1 / -2
Query: 453 GGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 286
GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 408 GGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 241
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 262,043,608
Number of Sequences: 312970
Number of extensions: 3856075
Number of successful extensions: 52355
Number of sequences better than 1.0e-020: 39
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6913923567
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)