TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.2
(660 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA... 117 6e-026
gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA... 117 6e-026
gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DA... 115 3e-025
gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm libra... 113 8e-025
gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm librar... 113 8e-025
gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm librar... 113 8e-025
gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm librar... 113 8e-025
gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm libra... 113 8e-025
gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. v... 111 4e-024
gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. v... 111 4e-024
gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. v... 111 4e-024
gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. v... 111 4e-024
gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedl... 110 7e-024
gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedl... 110 7e-024
gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. v... 110 7e-024
gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. v... 110 7e-024
gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, n... 110 7e-024
gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, n... 110 7e-024
gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, n... 110 7e-024
gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, n... 110 7e-024
gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 D... 110 7e-024
gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, sal... 110 7e-024
gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. v... 110 7e-024
gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. v... 110 7e-024
gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. v... 110 7e-024
gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. v... 110 7e-024
gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, n... 109 2e-023
gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. v... 109 2e-023
gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa... 108 3e-023
gb|CV054446.1|CV054446 BNEL10F10 Barley EST endosperm libra... 106 9e-023
gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. v... 103 9e-022
gb|CV063068.1|CV063068 BNEL86c5 Barley EST endosperm librar... 102 2e-021
gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa... 100 8e-021
gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. v... 100 8e-021
>gb|BM441819.2|BM441819 EBed07_SQ001_K08_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_K08 5', mRNA sequence
Length = 390
Score = 117 bits (250), Expect = 6e-026
Identities = 44/71 (61%), Positives = 52/71 (73%)
Frame = -2 / +3
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR+CES S RF+GPC R NCANVC TEGF GG C+GLR
Sbjct: 81 LLLVLLLAATGEMGGPVAVAEARRCESPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLR 260
Query: 155 HRCFCTRDC*Y 123
RCFCT C Y
Sbjct: 261 RRCFCTTHCRY 293
>gb|BQ755202.1|BQ755202 EBed07_SQ001_P21_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P21 5', mRNA sequence
Length = 410
Score = 117 bits (250), Expect = 6e-026
Identities = 44/71 (61%), Positives = 52/71 (73%)
Frame = -2 / +3
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR+CES S RF+GPC R NCANVC TEGF GG C+GLR
Sbjct: 90 LLLVLLLAATGEMGGPVAVAEARRCESPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLR 269
Query: 155 HRCFCTRDC*Y 123
RCFCT C Y
Sbjct: 270 RRCFCTTHCRY 302
>gb|BG367131.2|BG367131 HVSMEi0010M06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0010M06f, mRNA sequence
Length = 801
Score = 115 bits (245), Expect = 3e-025
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = -2 / +3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+C+S S RF+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 96 LVLLLAATGEMGGPVAVAEARRCQSPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 275
Query: 149 CFCTRDC*Y 123
CFCT C Y
Sbjct: 276 CFCTTHCRY 302
>gb|CV054686.1|CV054686 BNEL112b8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL112b8 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 113 bits (242), Expect = 8e-025
Identities = 43/69 (62%), Positives = 49/69 (71%)
Frame = -2 / -3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 355 LVLLLAATGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 176
Query: 149 CFCTRDC*Y 123
CFCT C Y
Sbjct: 175 CFCTTHCRY 149
>gb|CV057326.1|CV057326 BNEL26e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL26e6 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 113 bits (242), Expect = 8e-025
Identities = 43/69 (62%), Positives = 49/69 (71%)
Frame = -2 / +3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 87 LVLLLAATGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 266
Query: 149 CFCTRDC*Y 123
CFCT C Y
Sbjct: 267 CFCTTHCRY 293
>gb|CV057555.1|CV057555 BNEL29b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL29b5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 113 bits (242), Expect = 8e-025
Identities = 43/69 (62%), Positives = 49/69 (71%)
Frame = -2 / +3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 87 LVLLLAATGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 266
Query: 149 CFCTRDC*Y 123
CFCT C Y
Sbjct: 267 CFCTTHCRY 293
>gb|CV059057.1|CV059057 BNEL43h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h3 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 455
Score = 113 bits (242), Expect = 8e-025
Identities = 43/69 (62%), Positives = 49/69 (71%)
Frame = -2 / +3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 87 LVLLLAATGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 266
Query: 149 CFCTRDC*Y 123
CFCT C Y
Sbjct: 267 CFCTTHCRY 293
>gb|CV060822.1|CV060822 BNEL61f11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL61f11 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 561
Score = 113 bits (242), Expect = 8e-025
Identities = 43/69 (62%), Positives = 49/69 (71%)
Frame = -2 / +1
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CES S F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 97 LVLLLAATGEMGGPVAVAEARRCESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 276
Query: 149 CFCTRDC*Y 123
CFCT C Y
Sbjct: 277 CFCTTHCRY 303
>gb|BU967182.1|BU967182 HB03I09r BC Hordeum vulgare subsp. vulgare cDNA clone HB03I09
5-PRIME, mRNA sequence
Length = 488
Score = 111 bits (237), Expect = 4e-024
Identities = 42/69 (60%), Positives = 48/69 (69%)
Frame = -2 / +1
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 100 LVLLLAATGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 279
Query: 149 CFCTRDC*Y 123
CFC C Y
Sbjct: 280 CFCATHCRY 306
>gb|BU967570.1|BU967570 HB04L07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04L07
5-PRIME, mRNA sequence
Length = 408
Score = 111 bits (237), Expect = 4e-024
Identities = 42/69 (60%), Positives = 48/69 (69%)
Frame = -2 / +3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 87 LVLLLAATGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 266
Query: 149 CFCTRDC*Y 123
CFC C Y
Sbjct: 267 CFCATHCRY 293
>gb|BU975871.1|BU975871 HB32I22r BC Hordeum vulgare subsp. vulgare cDNA clone HB32I22
5-PRIME, mRNA sequence
Length = 448
Score = 111 bits (237), Expect = 4e-024
Identities = 42/69 (60%), Positives = 48/69 (69%)
Frame = -2 / +1
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 103 LVLLLAATGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 282
Query: 149 CFCTRDC*Y 123
CFC C Y
Sbjct: 283 CFCATHCRY 309
>gb|BU984366.1|BU984366 HF03L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L17
5-PRIME, mRNA sequence
Length = 376
Score = 111 bits (237), Expect = 4e-024
Identities = 42/69 (60%), Positives = 48/69 (69%)
Frame = -2 / +1
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 55 LVLLLAATGEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 234
Query: 149 CFCTRDC*Y 123
CFC C Y
Sbjct: 235 CFCATHCRY 261
>gb|BF621368.2|BF621368 HVSMEa0006K17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006K17f, mRNA sequence
Length = 831
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 97 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 276
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 277 RRCFCTTHC 303
>gb|BF255045.3|BF255045 HVSMEf0005M15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005M15f, mRNA sequence
Length = 539
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 25 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 204
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 205 RRCFCTTHC 231
>gb|BQ464026.1|BQ464026 HF01C09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
5-PRIME, mRNA sequence
Length = 576
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +3
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 102 LLLVLLLAATGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 281
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 282 RRCFCTTHC 308
>gb|BQ659635.1|BQ659635 HF01C09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C09
3-PRIME, mRNA sequence
Length = 587
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / -3
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 486 LLLVLLLAATGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 307
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 306 RRCFCTTHC 280
>gb|BM377151.2|BM377151 EBem05_SQ004_E10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_E10 5', mRNA sequence
Length = 570
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +3
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 93 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 272
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 273 RRCFCTTHC 299
>gb|BM096593.2|BM096593 EBem06_SQ001_P04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ001_P04 5', mRNA sequence
Length = 471
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 94 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 273
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 274 RRCFCTTHC 300
>gb|BM369646.2|BM369646 EBem07_SQ004_D12_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_D12 5', mRNA sequence
Length = 451
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 94 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 273
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 274 RRCFCTTHC 300
>gb|BM369664.2|BM369664 EBem07_SQ004_E07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_E07 5', mRNA sequence
Length = 427
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 94 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 273
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 274 RRCFCTTHC 300
>gb|BM099214.2|BM099214 EBes01_SQ002_J02_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_J02 5', mRNA sequence
Length = 548
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +3
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 87 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 266
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 267 RRCFCTTHC 293
>gb|BI777376.2|BI777376 EBro04_SQ001_A12_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_A12 5', mRNA sequence
Length = 471
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 94 LLLVLLLAATGELGGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 273
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 274 RRCFCTTHC 300
>gb|BU969935.1|BU969935 HB13B13r BC Hordeum vulgare subsp. vulgare cDNA clone HB13B13
5-PRIME, mRNA sequence
Length = 400
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 106 LLLVLLLAATGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 285
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 286 RRCFCTTHC 312
>gb|BU984694.1|BU984694 HF04L08r HF Hordeum vulgare subsp. vulgare cDNA clone HF04L08
5-PRIME, mRNA sequence
Length = 564
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +2
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 47 LLLVLLLAATGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 226
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 227 RRCFCTTHC 253
>gb|BU985142.1|BU985142 HF06E05r HF Hordeum vulgare subsp. vulgare cDNA clone HF06E05
5-PRIME, mRNA sequence
Length = 564
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +2
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 47 LLLVLLLAATGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 226
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 227 RRCFCTTHC 253
>gb|CA011721.1|CA011721 HT03F21r HT Hordeum vulgare subsp. vulgare cDNA clone HT03F21
5-PRIME, mRNA sequence
Length = 402
Score = 110 bits (235), Expect = 7e-024
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -2 / +2
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 104 LLLVLLLAATGELGGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 283
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 284 RRCFCTTHC 310
>gb|BM377924.2|BM377924 EBem04_SQ004_J18_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_J18 5', mRNA sequence
Length = 419
Score = 109 bits (232), Expect = 2e-023
Identities = 40/69 (57%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR CES+S RF+GPC R +NCANVC T+GF G C+G R
Sbjct: 85 LLLVLLLAATGELGGPVMVADARTCESRSHRFRGPCVRRSNCANVCKTDGFPDGKCRGFR 264
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 265 RRCFCTTHC 291
>gb|BU983109.1|BU983109 HA28J09r HA Hordeum vulgare subsp. vulgare cDNA clone HA28J09
5-PRIME, mRNA sequence
Length = 484
Score = 109 bits (232), Expect = 2e-023
Identities = 40/69 (57%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGP+ + AR CES+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 97 LLLVLLLAATGELGGPLIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 276
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 277 RRCFCTTHC 303
>gb|BG415395.2|BG415395 HVSMEk0006F02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006F02f, mRNA sequence
Length = 551
Score = 108 bits (231), Expect = 3e-023
Identities = 40/69 (57%), Positives = 50/69 (72%)
Frame = -2 / +1
Query: 335 VVLLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLR 156
++L+LL+ TG GGPV + AR C+S+S RF+GPC R +NCANVC TEGF G C+G R
Sbjct: 55 LLLVLLLAATGELGGPVMVAEARTCKSRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFR 234
Query: 155 HRCFCTRDC 129
RCFCT C
Sbjct: 235 RRCFCTTHC 261
>gb|CV054446.1|CV054446 BNEL10F10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL10F10 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 402
Score = 106 bits (227), Expect = 9e-023
Identities = 40/67 (59%), Positives = 47/67 (70%)
Frame = -2 / -3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L++L+ TG GGPV + AR+ ES S F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 355 LVMLLAATGEMGGPVAVAEARRSESPSHMFRGPCVRGHNCANVCRTEGFPGGNCRGLRRR 176
Query: 149 CFCTRDC 129
CFCT C
Sbjct: 175 CFCTTHC 155
>gb|CA012829.1|CA012829 HT06J05r HT Hordeum vulgare subsp. vulgare cDNA clone HT06J05
5-PRIME, mRNA sequence
Length = 306
Score = 103 bits (220), Expect = 9e-022
Identities = 38/61 (62%), Positives = 42/61 (68%)
Frame = -2 / +3
Query: 305 GTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC* 126
G GGPV + AR+CE S RF+GPC R NCANVC TEGF GG C+GLR RCFC C
Sbjct: 9 GEMGGPVAVAEARRCELPSHRFRGPCVRGHNCANVCRTEGFPGGNCRGLRRRCFCATHCR 188
Query: 125 Y 123
Y
Sbjct: 189 Y 191
>gb|CV063068.1|CV063068 BNEL86c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86c5 5' similar to proteinase
inhibitor Rgpi9, mRNA sequence
Length = 487
Score = 102 bits (218), Expect = 2e-021
Identities = 39/67 (58%), Positives = 46/67 (68%)
Frame = -2 / -3
Query: 329 LLLLVCYTGTQGGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHR 150
L+LL+ TG GPV + AR+ ES + F+GPC R NCANVC TEGF GG C+GLR R
Sbjct: 410 LVLLLAATGEMEGPVAVAKARRFESPNHMFRGPCVRGHNCANVCRTEGFPGGKCRGLRRR 231
Query: 149 CFCTRDC 129
CFCT C
Sbjct: 230 CFCTTHC 210
>gb|BG417491.1|BG417491 HVSMEk0017M20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017M20f, mRNA sequence
Length = 799
Score = 100 bits (213), Expect = 8e-021
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = -2 / +3
Query: 296 GGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 129
GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 132 GGPVMVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 299
>gb|BQ661645.1|BQ661645 HM04I05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04I05
3-PRIME, mRNA sequence
Length = 424
Score = 100 bits (213), Expect = 8e-021
Identities = 36/56 (64%), Positives = 41/56 (73%)
Frame = -2 / -2
Query: 296 GGPVTMVSARKCESQSFRFKGPCSRDANCANVCLTEGFTGGVCKGLRHRCFCTRDC 129
GGPV + AR CES+S RF+GPC R +NCANVC TEGF G C+G R RCFCT C
Sbjct: 408 GGPVIVAEARTCESRSHRFRGPCVRRSNCANVCKTEGFPDGKCRGFRRRCFCTTHC 241
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 296,252,460
Number of Sequences: 312970
Number of extensions: 4608836
Number of successful extensions: 61545
Number of sequences better than 1.0e-020: 41
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7126007112
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)