TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493976.2.1
(1294 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 349 e-104
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 209 3e-094
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 295 3e-092
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 292 1e-087
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 209 2e-084
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 210 5e-082
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 209 1e-080
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 194 4e-080
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 207 7e-080
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 192 9e-079
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 161 1e-077
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 183 1e-076
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 208 6e-076
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 282 2e-075
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 206 3e-075
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 177 8e-075
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 255 3e-074
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 255 3e-074
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 203 4e-074
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 174 2e-066
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 207 2e-064
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 167 2e-063
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 150 5e-062
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 167 7e-062
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 120 4e-061
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 165 2e-060
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 142 3e-060
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 87 1e-058
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 144 2e-058
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 133 8e-058
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 199 2e-057
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 222 4e-057
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 122 6e-057
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 151 2e-054
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 125 6e-054
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 122 2e-053
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 143 3e-052
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 143 3e-052
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 139 2e-051
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 195 1e-049
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 143 4e-049
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 113 6e-049
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 129 1e-048
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 168 3e-048
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 114 2e-047
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 124 6e-047
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 94 1e-046
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 124 2e-046
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 134 1e-045
gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. v... 153 5e-044
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 122 8e-044
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 133 1e-043
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 164 2e-042
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 96 3e-042
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 105 1e-040
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 161 6e-039
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 109 7e-039
gb|CB875905.1|CB875905 HX09L09w HX Hordeum vulgare subsp. v... 134 3e-038
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 122 4e-038
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 90 2e-034
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 145 4e-034
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 86 7e-033
gb|BQ660413.1|BQ660413 HI02G15u HI Hordeum vulgare subsp. v... 134 3e-032
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 82 2e-031
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 105 2e-030
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 97 1e-029
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 122 2e-029
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 95 2e-028
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 96 7e-027
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 98 7e-027
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 89 4e-025
gb|AL500971.1|AL500971 AL500971 Hordeum vulgare Barke roots... 115 7e-025
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 92 3e-024
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 84 5e-024
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 95 9e-024
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 87 1e-022
gb|BU999110.1|BU999110 HI13E18r HI Hordeum vulgare subsp. v... 101 5e-021
gb|AV917956.1|AV917956 AV917956 K. Sato unpublished cDNA li... 102 5e-021
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 349 bits (756), Expect(2) = e-104
Identities = 140/167 (83%), Positives = 147/167 (88%)
Frame = +2 / +3
Query: 374 GGGRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 553
G +CLPGS VVTATNFCPPN SD GGWCNPPRAHFDMSQPVFQRIALYRAGIVPV
Sbjct: 96 GAPHACLPGSTVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 275
Query: 554 SYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQN 733
SYRRVAC KKGGIRFTINGHSYFNLVLVTNV G GDVHAV+VK+ RS WQALSRNWGQN
Sbjct: 276 SYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQN 455
Query: 734 WQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQFN* 874
WQSN LLDGQ LSFRVT +G+SV+SNNA PRGWSFGQTFSGAQF+*
Sbjct: 456 WQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQFH* 596
Score = 264 bits (572), Expect = 5e-070
Identities = 115/180 (63%), Positives = 125/180 (69%)
Frame = -2 / -1
Query: 873 QLNWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPG 694
Q NWAPLKVWP DQPRG ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH
Sbjct: 595 QWNWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAA 416
Query: 693 ERXXXXXXXXXXXXXXTLVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRW 514
ER TLVTSTRLK EWPL+V MPPF HATLR*ETGTMPA *SAMRW
Sbjct: 415 ERVDLTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRW 236
Query: 513 NTGCDMSKWARGGLHQPPSSXGSALLGGQKLVAVTTTEPGRHERPPPPAASHRTSKQAPQ 334
TG DMSKWARGGLHQPP+S S LGGQKLVAVTT EPGR P + + + + Q
Sbjct: 235 KTGWDMSKWARGGLHQPPASDDSPKLGGQKLVAVTTVEPGRQAWGAPASVPPGSHRTSKQ 56
Score = 134 bits (288), Expect(3) = 1e-036
Identities = 62/89 (69%), Positives = 71/89 (79%)
Frame = -1 / -3
Query: 763 LPVQERVALPVLAPVARQGLPPGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAA 584
LPV++RVALPVL PVA + LP A L G+RVHVAGA HVG Q+QVEV VA+D E AA
Sbjct: 485 LPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAA 306
Query: 583 LLVARNPAVGDGNNAGPVERDALEHGLRH 497
LL+AR+PAVGDG+NAG VERDALE GL H
Sbjct: 305 LLLARHPAVGDGDNAGAVERDALEDGLGH 219
Score = 52.4 bits (108), Expect(2) = e-104
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +2 / +3
Query: 311 ALFNNGLSCGACFEVRCDAAG 373
ALFNNGLSCGACFEVRCD G
Sbjct: 24 ALFNNGLSCGACFEVRCDPGG 86
Score = 36.8 bits (74), Expect(3) = 1e-036
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -1
Query: 372 PAASHRTSKQAPQLRP 325
P SHRTSKQAPQLRP
Sbjct: 85 PPGSHRTSKQAPQLRP 38
Score = 24.9 bits (48), Expect(3) = 1e-036
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 874 SVELGTAESLAERP 833
SVELG AE LAE P
Sbjct: 596 SVELGAAEGLAE*P 555
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 209 bits (450), Expect(4) = 3e-094
Identities = 81/105 (77%), Positives = 88/105 (83%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC PGS++VTATNFCPPN LPSDDGGWCNPPR HFDM++P F IA YRAGIVPVSY
Sbjct: 366 GSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSY 545
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
RRV C KKGGIRFTINGHSYFNLVLVTNV GAGD +V +K R+
Sbjct: 546 RRVPCVKKGGIRFTINGHSYFNLVLVTNVXGAGDARSVFIKGTRT 680
Score = 148 bits (317), Expect(4) = 6e-057
Identities = 65/88 (73%), Positives = 66/88 (75%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV RMPPF H TL *ETGTMPA AM G MSKW RGGLHQP
Sbjct: 628 LVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQP 449
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS G LGGQKLVAVT +PGRHE P
Sbjct: 448 PSSLGRP*LGGQKLVAVTMMDPGRHELP 365
Score = 106 bits (227), Expect(4) = 3e-094
Identities = 42/70 (60%), Positives = 47/70 (67%)
Frame = +2 / +3
Query: 176 GGGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEV 355
G G W SAHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E+
Sbjct: 171 GYGGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYEL 350
Query: 356 RCDAAGGGGR 385
RCD AG R
Sbjct: 351 RCDNAGSSCR 380
Score = 87.7 bits (185), Expect(3) = 2e-022
Identities = 41/68 (60%), Positives = 46/68 (67%)
Frame = -1 / -2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA + VAGA HVGHQ+QVEVGVAVDGE A LL AR+P+VGDG +AG V RD
Sbjct: 686 PAGARAFDEHGARVAGAXHVGHQHQVEVGVAVDGEPDAPLLHARHPSVGDGYDAGAVLRD 507
Query: 520 ALEHGLRH 497
E L H
Sbjct: 506 VEEGRLGH 483
Score = 64.3 bits (134), Expect(4) = 3e-094
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / +3
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSD 793
GWQA+SRNWG NWQSNT L Q LSF+VT+ D
Sbjct: 681 GWQAMSRNWGMNWQSNTFLGRQCLSFKVTSRD 776
Score = 49.6 bits (102), Expect(4) = 6e-057
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -1 / -2
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRATS 176
P AV+V VP RPAH AG +AAAVEGG+ P A +
Sbjct: 275 PSAVQVTVPARPAHRAGGVAAAVEGGMGALPPAVA 171
Score = 48.7 bits (100), Expect(4) = 6e-057
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = -2 / -3
Query: 792 SLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
SL VT K+R R VLLCQF PQLRD AC P
Sbjct: 775 SLEVTLKERHWRPRKVLLCQFMPQLRDMACQP 680
Score = 34.1 bits (68), Expect(3) = 2e-022
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = -1 / -2
Query: 763 LPVQERVALPVLAPVARQGLPPG 695
L QE VALPV APVA GLP G
Sbjct: 746 LASQEGVALPVHAPVAGHGLPAG 678
Score = 32.2 bits (64), Expect(4) = 6e-057
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2 / -3
Query: 372 PAASHRTSKQAPQLRPXXXXXXXXXXXXVPYPWL*RLPY 256
PA S R+S P P VPYP L RLPY
Sbjct: 367 PALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPY 251
Score = 27.2 bits (53), Expect(3) = 2e-022
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRG 264
APPC CRT C G
Sbjct: 297 APPCSCRTQCCTG 259
Score = 24.4 bits (47), Expect(4) = 3e-094
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / +2
Query: 797 RSVLSNNAAPRGW 835
R+V SN AAP GW
Sbjct: 779 RTVTSNAAAPGGW 817
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 295 bits (639), Expect(2) = 3e-092
Identities = 118/142 (83%), Positives = 123/142 (86%)
Frame = +2 / +2
Query: 374 GGGRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 553
G +CLPGS VVTATNFCPPN SD GGWCNPPRAHFDMSQPVFQRIALYRAGIVPV
Sbjct: 92 GAPHACLPGSTVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 271
Query: 554 SYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQN 733
SYRRVAC KKGGIRFTINGHSYFNLVLVTNV G GDVHAV+VK+ RS WQALSRNWGQN
Sbjct: 272 SYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQN 451
Query: 734 WQSNTLLDGQALSFRVTTSDGR 799
WQSN LLDGQ LSFRVT +G+
Sbjct: 452 WQSNALLDGQGLSFRVTAGNGQ 517
Score = 213 bits (459), Expect = 2e-054
Identities = 95/154 (61%), Positives = 103/154 (66%)
Frame = -2 / -1
Query: 795 PSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPGERXXXXXXXXXXXXXXTLVTSTRLK* 616
P VTR +R CPS S LLCQF PQLR+ ACH ER TLVTSTRLK
Sbjct: 513 PLPAVTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKY 334
Query: 615 EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALL 436
EWPL+V MPPF HATLR*ETGTMPA *SAMRW TG DMSKWARGGLHQPP+S S L
Sbjct: 333 EWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPPASDDSPKL 154
Query: 435 GGQKLVAVTTTEPGRHERPPPPAASHRTSKQAPQ 334
GGQKLVAVTT EPGR P + + + + Q
Sbjct: 153 GGQKLVAVTTVEPGRQAWGAPASVPPGSHRTSKQ 52
Score = 134 bits (288), Expect(2) = 4e-035
Identities = 62/89 (69%), Positives = 71/89 (79%)
Frame = -1 / -3
Query: 763 LPVQERVALPVLAPVARQGLPPGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAA 584
LPV++RVALPVL PVA + LP A L G+RVHVAGA HVG Q+QVEV VA+D E AA
Sbjct: 481 LPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAA 302
Query: 583 LLVARNPAVGDGNNAGPVERDALEHGLRH 497
LL+AR+PAVGDG+NAG VERDALE GL H
Sbjct: 301 LLLARHPAVGDGDNAGAVERDALEDGLGH 215
Score = 64.3 bits (134), Expect(2) = 3e-092
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +2 / +2
Query: 293 TAALSTALFNNGLSCGACFEVRCDAAG 373
TAALSTALFNNGLSCGACFEVRCD G
Sbjct: 2 TAALSTALFNNGLSCGACFEVRCDPGG 82
Score = 36.8 bits (74), Expect(2) = 4e-035
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -1
Query: 372 PAASHRTSKQAPQLRP 325
P SHRTSKQAPQLRP
Sbjct: 81 PPGSHRTSKQAPQLRP 34
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 292 bits (631), Expect(2) = 1e-087
Identities = 117/137 (85%), Positives = 120/137 (87%)
Frame = +2 / +3
Query: 374 GGGRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 553
G +CLPGS VVTATNFCPPN SD GGWCNPPRAHFDMSQPVFQRIALYRAGIVPV
Sbjct: 75 GAPHACLPGSTVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 254
Query: 554 SYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQN 733
SYRRVAC KKGGIRFTINGHSYFNLVLVTNV G GDVHAV+VK+ RS WQALSRNWGQN
Sbjct: 255 SYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQN 434
Query: 734 WQSNTLLDGQALSFRVT 784
WQSN LLDGQ LSFRVT
Sbjct: 435 WQSNALLDGQGLSFRVT 485
Score = 212 bits (457), Expect = 4e-054
Identities = 94/150 (62%), Positives = 102/150 (68%)
Frame = -2 / -3
Query: 783 VTRKDRACPSRSVLLCQFWPQLRDRACHPGERXXXXXXXXXXXXXXTLVTSTRLK*EWPL 604
VTR +R CPS S LLCQF PQLR+ ACH ER TLVTSTRLK EWPL
Sbjct: 484 VTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTLVTSTRLKYEWPL 305
Query: 603 MVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQK 424
+V MPPF HATLR*ETGTMPA *SAMRW TG DMSKWARGGLHQPP+S S LGGQK
Sbjct: 304 IVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPPASDDSPKLGGQK 125
Query: 423 LVAVTTTEPGRHERPPPPAASHRTSKQAPQ 334
LVAVTT EPGR P + + + + Q
Sbjct: 124 LVAVTTVEPGRQAWGAPASVPPGSHRTSKQ 35
Score = 134 bits (288), Expect(2) = 5e-035
Identities = 62/89 (69%), Positives = 71/89 (79%)
Frame = -1 / -2
Query: 763 LPVQERVALPVLAPVARQGLPPGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAA 584
LPV++RVALPVL PVA + LP A L G+RVHVAGA HVG Q+QVEV VA+D E AA
Sbjct: 464 LPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAA 285
Query: 583 LLVARNPAVGDGNNAGPVERDALEHGLRH 497
LL+AR+PAVGDG+NAG VERDALE GL H
Sbjct: 284 LLLARHPAVGDGDNAGAVERDALEDGLGH 198
Score = 52.4 bits (108), Expect(2) = 1e-087
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +2 / +3
Query: 311 ALFNNGLSCGACFEVRCDAAG 373
ALFNNGLSCGACFEVRCD G
Sbjct: 3 ALFNNGLSCGACFEVRCDPGG 65
Score = 36.8 bits (74), Expect(2) = 5e-035
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 372 PAASHRTSKQAPQLRP 325
P SHRTSKQAPQLRP
Sbjct: 64 PPGSHRTSKQAPQLRP 17
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 209 bits (451), Expect(2) = 2e-084
Identities = 78/105 (74%), Positives = 91/105 (86%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 28 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 207
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
RRV C KKGG+RFTINGHSYFNLVLVTNV GAGDV +V++K S
Sbjct: 208 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSS 342
Score = 136 bits (291), Expect(2) = 1e-057
Identities = 62/88 (70%), Positives = 65/88 (73%)
Frame = -2 / -2
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 290 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 111
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 110 PSSLGSA*LGGQRLVAVMVMLPGTHELP 27
Score = 124 bits (266), Expect(2) = 2e-084
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = +2 / +1
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
S GWQA+SRNWGQNWQSN LDGQ+LSFRVT SDGR+V SNNAAP GWSFGQTF G QF
Sbjct: 337 SSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 513
Score = 108 bits (230), Expect(2) = 1e-057
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / -2
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NW P KV PKDQP GAALL T RPSL VTRK+R PSRS LLCQFWPQLRD ACHP
Sbjct: 512 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHP 342
Score = 87.2 bits (184), Expect(2) = 2e-023
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -1 / -1
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG V+ D
Sbjct: 348 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTD 169
Query: 520 ALEHGLRH 497
GL H
Sbjct: 168 LEVGGLCH 145
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1 / -1
Query: 763 LPVQERVALPVLAPVARQGLPPG 695
L V+ RVALPVLAPVA GLPPG
Sbjct: 408 LAVEVRVALPVLAPVAGHGLPPG 340
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 210 bits (453), Expect(3) = 5e-082
Identities = 81/105 (77%), Positives = 89/105 (84%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC PGS++VTATNFCPPN LPSDDGGWCNPPR HFDM++P F IA YRAGIVPVSY
Sbjct: 148 GSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSY 327
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
RRV C KKGGIRFTINGHSYFNLVLVTNV GAGD +V++K R+
Sbjct: 328 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRT 462
Score = 148 bits (317), Expect(3) = 4e-045
Identities = 65/88 (73%), Positives = 66/88 (75%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV RMPPF H TL *ETGTMPA AM G MSKW RGGLHQP
Sbjct: 410 LVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQP 231
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS G LGGQKLVAVT +PGRHE P
Sbjct: 230 PSSLGRP*LGGQKLVAVTMMDPGRHELP 147
Score = 92.3 bits (195), Expect(3) = 6e-024
Identities = 43/68 (63%), Positives = 48/68 (70%)
Frame = -1 / -2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ VAGA HVGHQ+QVEVGVAVDGE A LL AR+P+VGDG +AG V RD
Sbjct: 468 PAGARALDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPLLHARHPSVGDGYDAGAVLRD 289
Query: 520 ALEHGLRH 497
E L H
Sbjct: 288 VEEGRLGH 265
Score = 85.4 bits (180), Expect(3) = 5e-082
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2 / +1
Query: 257 YGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAAGGGGR 385
YGNLYS GYGTNTAALSTALFN+G +CG+C+E+RCD AG R
Sbjct: 34 YGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCR 162
Score = 49.2 bits (101), Expect(3) = 5e-082
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2 / +1
Query: 698 GWQALSRNWGQNWQSNTLL 754
GWQA+SRNWG NWQSNT L
Sbjct: 463 GWQAMSRNWGMNWQSNTFL 519
Score = 40.5 bits (82), Expect(3) = 4e-045
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = -2 / -3
Query: 753 RSVLLCQFWPQLRDRACHP 697
R VLLCQF PQLRD AC P
Sbjct: 518 RKVLLCQFMPQLRDMACQP 462
Score = 33.6 bits (67), Expect(3) = 6e-024
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = -1 / -2
Query: 754 QERVALPVLAPVARQGLPPG 695
QE VALPV APVA GLP G
Sbjct: 519 QEGVALPVHAPVAGHGLPAG 460
Score = 32.2 bits (64), Expect(3) = 4e-045
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2 / -3
Query: 372 PAASHRTSKQAPQLRPXXXXXXXXXXXXVPYPWL*RLPY 256
PA S R+S P P VPYP L RLPY
Sbjct: 149 PALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPY 33
Score = 27.2 bits (53), Expect(3) = 6e-024
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRG 264
APPC CRT C G
Sbjct: 79 APPCSCRTQCCTG 41
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 209 bits (451), Expect(3) = 1e-080
Identities = 78/105 (74%), Positives = 91/105 (86%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 171 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 350
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
RRV C KKGG+RFTINGHSYFNLVLVTNV GAGDV +V++K S
Sbjct: 351 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSS 485
Score = 136 bits (291), Expect(4) = 1e-047
Identities = 62/88 (70%), Positives = 65/88 (73%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 433 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 254
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 253 PSSLGSA*LGGQRLVAVMVMLPGTHELP 170
Score = 87.2 bits (184), Expect(2) = 1e-021
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -1 / -2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG V+ D
Sbjct: 491 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTD 312
Query: 520 ALEHGLRH 497
GL H
Sbjct: 311 LEVGGLCH 288
Score = 82.2 bits (173), Expect(3) = 1e-080
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = +2 / +3
Query: 197 AHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAA 370
A TFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C +
Sbjct: 3 ARGTFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKCQGS 176
Score = 48.7 bits (100), Expect(3) = 1e-080
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / +3
Query: 692 SPGWQALSRNWGQNWQSN 745
S GWQA+SRNWGQNWQSN
Sbjct: 480 SSGWQAMSRNWGQNWQSN 533
Score = 45.5 bits (93), Expect(4) = 1e-047
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -2 / -3
Query: 744 LLCQFWPQLRDRACHP 697
LLCQFWPQLRD ACHP
Sbjct: 532 LLCQFWPQLRDMACHP 485
Score = 36.8 bits (74), Expect(4) = 1e-047
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -1 / -2
Query: 274 AVEVAVPTRPAHGAGRIAAAVEG 206
AV+V V R AH AGR+AAAVEG
Sbjct: 80 AVQVPVAARAAHCAGRVAAAVEG 12
Score = 36.8 bits (74), Expect(2) = 1e-021
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -2
Query: 745 VALPVLAPVARQGLPPG 695
VALPVLAPVA GLPPG
Sbjct: 533 VALPVLAPVAGHGLPPG 483
Score = 28.6 bits (56), Expect(4) = 1e-047
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 108 APPCSCRNPCCTG 70
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 194 bits (419), Expect(2) = 4e-080
Identities = 73/98 (74%), Positives = 85/98 (86%)
Frame = +2 / -3
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSYRRV C K
Sbjct: 718 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 539
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
KGG+RFTINGHSYFNLVLVTNV GAGDV +V++K S
Sbjct: 538 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSS 425
Score = 124 bits (266), Expect(2) = 3e-054
Identities = 57/77 (74%), Positives = 60/77 (77%)
Frame = -2 / +3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 477 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 656
Query: 462 PSSXGSALLGGQKLVAV 412
PSS GSA LGGQ+LVAV
Sbjct: 657 PSSLGSA*LGGQRLVAV 707
Score = 124 bits (266), Expect(2) = 4e-080
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = +2 / -3
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
S GWQA+SRNWGQNWQSN LDGQ+LSFRVT SDGR+V SNNAAP GWSFGQTF G QF
Sbjct: 430 SSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 254
Score = 108 bits (230), Expect(2) = 3e-054
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / +3
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NW P KV PKDQP GAALL T RPSL VTRK+R PSRS LLCQFWPQLRD ACHP
Sbjct: 255 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHP 425
Score = 87.2 bits (184), Expect(2) = 2e-023
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -1 / +2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG V+ D
Sbjct: 419 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTD 598
Query: 520 ALEHGLRH 497
GL H
Sbjct: 599 LEVGGLCH 622
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1 / +2
Query: 763 LPVQERVALPVLAPVARQGLPPG 695
L V+ RVALPVLAPVA GLPPG
Sbjct: 359 LAVEVRVALPVLAPVAGHGLPPG 427
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 207 bits (446), Expect(3) = 7e-080
Identities = 78/105 (74%), Positives = 90/105 (85%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAH DM++P + +I +YRAGIVPVSY
Sbjct: 304 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHCDMAEPAYLQIGIYRAGIVPVSY 483
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
RRV C KKGGIRFTINGHSYFNLVLVTNV GAGDV +V++K S
Sbjct: 484 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSS 618
Score = 128 bits (274), Expect(4) = 1e-042
Identities = 60/88 (68%), Positives = 64/88 (72%)
Frame = -2 / -1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MS+ ARGGLHQP
Sbjct: 566 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSQCARGGLHQP 387
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 386 PSSLGSA*LGGQRLVAVMVMLPGTHELP 303
Score = 96.4 bits (204), Expect(3) = 7e-080
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +1
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 121 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 300
Query: 362 DAA 370
+
Sbjct: 301 QGS 309
Score = 45.5 bits (93), Expect(4) = 1e-042
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -3
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 213 AVQVPVAARAAHCAGRVAAAVEGGVCGLPRA 121
Score = 34.1 bits (68), Expect(3) = 7e-080
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 692 SPGWQALSRNWGQNW 736
S GWQA+ +WGQNW
Sbjct: 613 SSGWQAMCPHWGQNW 657
Score = 28.6 bits (56), Expect(4) = 1e-042
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -2
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 241 APPCSCRNPCCTG 203
Score = 27.6 bits (54), Expect(4) = 1e-042
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / -3
Query: 736 PVLAPVARQGLPPG 695
PVL PV GLPPG
Sbjct: 657 PVLTPVRAHGLPPG 616
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 192 bits (413), Expect(3) = 9e-079
Identities = 74/97 (76%), Positives = 80/97 (82%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC PGS++VTATNFCPPN LPSDDGGWCNPPR H DM++P F IA YRAGIVP+SY
Sbjct: 366 GSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHLDMAEPAFLHIAQYRAGIVPLSY 545
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHA 670
RRV C KKGGIRFTINGHSY NL LVTNV GAGD +
Sbjct: 546 RRVPCVKKGGIRFTINGHSYLNLGLVTNVAGAGDARS 656
Score = 140 bits (301), Expect(4) = 4e-048
Identities = 62/88 (70%), Positives = 63/88 (71%)
Frame = -2 / -1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTS R K*EWPLMV RMPPF H TL *E GTMPA AM G MSKW RGGLHQP
Sbjct: 628 LVTSPRFK*EWPLMVNRMPPFFTHGTLL*ERGTMPARYCAMWRKAGSAMSKWGRGGLHQP 449
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS G LGGQKLVAVT +PGRHE P
Sbjct: 448 PSSLGRP*LGGQKLVAVTMMDPGRHELP 365
Score = 106 bits (227), Expect(3) = 9e-079
Identities = 42/70 (60%), Positives = 47/70 (67%)
Frame = +2 / +3
Query: 176 GGGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEV 355
G G W SAHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E+
Sbjct: 171 GYGGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYEL 350
Query: 356 RCDAAGGGGR 385
RCD AG R
Sbjct: 351 RCDNAGSSCR 380
Score = 49.6 bits (102), Expect(4) = 4e-048
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -1 / -3
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRATS 176
P AV+V VP RPAH AG +AAAVEGG+ P A +
Sbjct: 275 PSAVQVTVPARPAHRAGGVAAAVEGGMGALPPAVA 171
Score = 35.0 bits (70), Expect(3) = 9e-079
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2 / +1
Query: 707 ALSRNWGQNWQSNTLLDGQALSFRVTTSDGRS 802
A+SR WG WQS TLL G +TS R+
Sbjct: 688 AMSRTWGLTWQSTTLLGGPRPLLSGSTSADRA 783
Score = 32.2 bits (64), Expect(4) = 4e-048
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2 / -1
Query: 372 PAASHRTSKQAPQLRPXXXXXXXXXXXXVPYPWL*RLPY 256
PA S R+S P P VPYP L RLPY
Sbjct: 367 PALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPY 251
Score = 26.3 bits (51), Expect(4) = 4e-048
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / -3
Query: 759 PSRSVLLCQFWPQLRDRA 706
P V+LCQ PQ+RD A
Sbjct: 740 PPSKVVLCQVKPQVRDMA 687
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 161 bits (346), Expect(4) = 1e-077
Identities = 61/80 (76%), Positives = 70/80 (87%)
Frame = +2 / +1
Query: 455 DDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVL 634
DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSYRRV C KKGG+RFTINGHSYFNLVL
Sbjct: 184 DDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVL 363
Query: 635 VTNVEGAGDVHAVAVKADRS 694
VTNV GAGDV +V++K S
Sbjct: 364 VTNVAGAGDVQSVSIKGSSS 423
Score = 104 bits (221), Expect(3) = 2e-037
Identities = 47/72 (65%), Positives = 51/72 (70%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 371 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 192
Query: 462 PSSXGSALLGGQ 427
PSS + G+
Sbjct: 191 PSSSAARSWAGK 156
Score = 87.2 bits (184), Expect(3) = 5e-023
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -1 / -2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG V+ D
Sbjct: 429 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTD 250
Query: 520 ALEHGLRH 497
GL H
Sbjct: 249 LEVGGLCH 226
Score = 69.8 bits (146), Expect(4) = 1e-077
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = +2 / +1
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAP 826
S GWQA+ WG NWQSN LDGQ+LSF+VT + R V NNAAP
Sbjct: 418 SSGWQAMFPQWGHNWQSNADLDGQSLSFQVTLTYRRDVTINNAAP 552
Score = 69.8 bits (146), Expect(4) = 1e-077
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2 / +2
Query: 260 GNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAA 370
GNLYS G GTNTAALSTALFN+G +CG+C+E++C +
Sbjct: 5 GNLYSTGCGTNTAALSTALFNDGAACGSCYELKCQGS 115
Score = 56.5 bits (117), Expect(3) = 2e-037
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = -2 / -3
Query: 825 GAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
GAALL T R + VT K+R PSRS LLCQ WP + ACHP
Sbjct: 551 GAALLMVTSRR*VRVT*KERL*PSRSALLCQLWPHCGNMACHP 423
Score = 47.3 bits (97), Expect(4) = 1e-077
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2 / +2
Query: 380 GRSCLPGSVVVTATNFCPPNNAL 448
G SC+PGS+ +TATN CPPN AL
Sbjct: 110 GSSCVPGSITITATNLCPPNYAL 178
Score = 38.6 bits (78), Expect(3) = 5e-023
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -1 / -2
Query: 763 LPVQERVALPVLAPVARQGLPPG 695
L V+ RVALPV+AP+ GLPPG
Sbjct: 489 LTVEVRVALPVMAPLREHGLPPG 421
Score = 34.1 bits (68), Expect(3) = 2e-037
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -2 / -2
Query: 447 SALLGGQKLVAVTTTEPGRHERP 379
SA LGGQ+LVAV PG HE P
Sbjct: 177 SA*LGGQRLVAVMVMLPGTHELP 109
Score = 24.9 bits (48), Expect(3) = 5e-023
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2 / -3
Query: 189 HAPPPSGAWPCGLGCGWARWW 127
H PP S A G GW R W
Sbjct: 200 HQPPSSSAARSWAGKGWWR*W 138
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 183 bits (394), Expect(2) = 1e-076
Identities = 69/92 (75%), Positives = 79/92 (85%)
Frame = +2 / +2
Query: 419 TNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRF 598
T CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSYRRV C KKGG+RF
Sbjct: 5 TRLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRF 184
Query: 599 TINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
TINGHSYFNLVLVTNV GAGDV +V++K S
Sbjct: 185 TINGHSYFNLVLVTNVAGAGDVQSVSIKGSSS 280
Score = 124 bits (266), Expect(2) = 1e-076
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = +2 / +2
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
S GWQA+SRNWGQNWQSN LDGQ+LSFRVT SDGR+V SNNAAP GWSFGQTF G QF
Sbjct: 275 SSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 451
Score = 120 bits (256), Expect(2) = 7e-053
Identities = 55/75 (73%), Positives = 57/75 (76%)
Frame = -2 / -2
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 228 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 49
Query: 462 PSSXGSALLGGQKLV 418
PSS GSA LGGQ LV
Sbjct: 48 PSSLGSA*LGGQSLV 4
Score = 108 bits (230), Expect(2) = 7e-053
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / -2
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NW P KV PKDQP GAALL T RPSL VTRK+R PSRS LLCQFWPQLRD ACHP
Sbjct: 450 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHP 280
Score = 87.2 bits (184), Expect(2) = 2e-023
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -1 / -1
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG V+ D
Sbjct: 286 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTD 107
Query: 520 ALEHGLRH 497
GL H
Sbjct: 106 LEVGGLCH 83
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1 / -1
Query: 763 LPVQERVALPVLAPVARQGLPPG 695
L V+ RVALPVLAPVA GLPPG
Sbjct: 346 LAVEVRVALPVLAPVAGHGLPPG 278
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 208 bits (449), Expect(4) = 6e-076
Identities = 78/107 (72%), Positives = 91/107 (85%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 91 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 270
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRSPG 700
RRV C KKGG+RFTINGHSYFNLVLVTNV GAGDV +V++K G
Sbjct: 271 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGPAPGG 411
Score = 136 bits (291), Expect(2) = 2e-036
Identities = 62/88 (70%), Positives = 65/88 (73%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 353 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 174
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 173 PSSLGSA*LGGQRLVAVMVMLPGTHELP 90
Score = 62.0 bits (129), Expect(4) = 6e-076
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2 / +1
Query: 278 GYGTNTAALSTALFNNGLSCGACFEVRCDAA 370
GYGTNTAALSTALFN+G +CG+C+E++C +
Sbjct: 4 GYGTNTAALSTALFNDGAACGSCYELKCQGS 96
Score = 39.1 bits (79), Expect(4) = 6e-076
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +2 / +2
Query: 704 QALSRNWGQNWQSN 745
+ALSRNWGQNWQSN
Sbjct: 410 EALSRNWGQNWQSN 451
Score = 37.3 bits (75), Expect(2) = 2e-036
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2 / -2
Query: 744 LLCQFWPQLRDRA 706
LLCQFWPQLRDRA
Sbjct: 450 LLCQFWPQLRDRA 412
Score = 33.1 bits (66), Expect(4) = 6e-076
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2 / +1
Query: 809 SNNAAPRGWSFGQTFSGAQ 865
S +AP WSFGQTF G Q
Sbjct: 517 STTSAPSRWSFGQTFQGRQ 573
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 282 bits (611), Expect = 2e-075
Identities = 113/133 (84%), Positives = 118/133 (88%)
Frame = +2 / +2
Query: 422 NFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFT 601
NFCPPN SD GGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVAC KKGGIRFT
Sbjct: 17 NFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFT 196
Query: 602 INGHSYFNLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQNWQSNTLLDGQALSFRV 781
INGHSYFNLVLVTNV G GDVHAV+VK+ RS WQALSRNWGQNWQSN LLDGQ LSFRV
Sbjct: 197 INGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRV 376
Query: 782 TTSDGRSVLSNNA 820
T +G+SV+SNNA
Sbjct: 377 TAGNGQSVVSNNA 415
Score = 202 bits (435), Expect = 4e-051
Identities = 89/133 (66%), Positives = 95/133 (71%)
Frame = -2 / -2
Query: 819 ALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPGERXXXXXXXXXXXXXXTL 640
ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH ER TL
Sbjct: 414 ALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAAERVDLTDTACTSPGPPTL 235
Query: 639 VTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPP 460
VTSTRLK EWPL+V MPPF HATLR*ETGTMPA *SAMRW TG DMSKWARGGLHQPP
Sbjct: 234 VTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGWDMSKWARGGLHQPP 55
Query: 459 SSXGSALLGGQKL 421
+S S LGGQKL
Sbjct: 54 ASDDSPKLGGQKL 16
Score = 134 bits (288), Expect = 8e-031
Identities = 62/89 (69%), Positives = 71/89 (79%)
Frame = -1 / -1
Query: 763 LPVQERVALPVLAPVARQGLPPGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAA 584
LPV++RVALPVL PVA + LP A L G+RVHVAGA HVG Q+QVEV VA+D E AA
Sbjct: 358 LPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAA 179
Query: 583 LLVARNPAVGDGNNAGPVERDALEHGLRH 497
LL+AR+PAVGDG+NAG VERDALE GL H
Sbjct: 178 LLLARHPAVGDGDNAGAVERDALEDGLGH 92
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 206 bits (445), Expect(2) = 3e-075
Identities = 76/101 (75%), Positives = 90/101 (89%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 327 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 506
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVK 682
RRV C KKGG+RFTINGHSYFNLVLVTNV GAGDV +V+++
Sbjct: 507 RRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIR 629
Score = 136 bits (291), Expect(3) = 4e-042
Identities = 62/88 (70%), Positives = 65/88 (73%)
Frame = -2 / -1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 589 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 410
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 409 PSSLGSA*LGGQRLVAVMVMLPGTHELP 326
Score = 96.4 bits (204), Expect(2) = 3e-075
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +3
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 144 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 323
Query: 362 DAA 370
+
Sbjct: 324 QGS 332
Score = 46.0 bits (94), Expect(3) = 4e-042
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -3
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 236 AVQVPVAARAAHCAGRVAAAVEGGVGGLPRA 144
Score = 28.6 bits (56), Expect(3) = 4e-042
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -2
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 264 APPCSCRNPCCTG 226
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 177 bits (380), Expect(2) = 8e-075
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2 / +3
Query: 431 PPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFTING 610
PPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSYRRV C KKGG+RFTING
Sbjct: 3 PPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 182
Query: 611 HSYFNLVLVTNVEGAGDVHAVAVKADRS 694
HSYFNLVLVTNV GAGDV +V++K S
Sbjct: 183 HSYFNLVLVTNVAGAGDVQSVSIKGSSS 266
Score = 124 bits (266), Expect(2) = 8e-075
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = +2 / +3
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
S GWQA+SRNWGQNWQSN LDGQ+LSFRVT SDGR+V SNNAAP GWSFGQTF G QF
Sbjct: 261 SSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 437
Score = 114 bits (243), Expect(2) = 4e-051
Identities = 52/71 (73%), Positives = 54/71 (76%)
Frame = -2 / -1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 214 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 35
Query: 462 PSSXGSALLGG 430
PSS GSA LGG
Sbjct: 34 PSSLGSA*LGG 2
Score = 108 bits (230), Expect(2) = 4e-051
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / -1
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NW P KV PKDQP GAALL T RPSL VTRK+R PSRS LLCQFWPQLRD ACHP
Sbjct: 436 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHP 266
Score = 87.2 bits (184), Expect(2) = 2e-023
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = -1 / -3
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG V+ D
Sbjct: 272 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGAVDTD 93
Query: 520 ALEHGLRH 497
GL H
Sbjct: 92 LEVGGLCH 69
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -1 / -3
Query: 763 LPVQERVALPVLAPVARQGLPPG 695
L V+ RVALPVLAPVA GLPPG
Sbjct: 332 LAVEVRVALPVLAPVAGHGLPPG 264
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 255 bits (551), Expect(2) = 3e-074
Identities = 104/121 (85%), Positives = 110/121 (90%)
Frame = +2 / +2
Query: 512 FQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADR 691
FQRIALYRAGIVPVSYRRVAC KKGGIRFTINGHSYFNLVLVTNV G GDVHAV+VK+ R
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQFN 871
S WQALSRNWGQNWQSN LLDGQ LSFRVT +G+SV+SNNA PRGWSFGQTFSGAQF+
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQFH 361
Query: 872 * 874
*
Sbjct: 362 * 364
Score = 188 bits (406), Expect(2) = 1e-049
Identities = 81/121 (66%), Positives = 86/121 (71%)
Frame = -2 / -1
Query: 873 QLNWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPG 694
Q NWAPLKVWP DQPRG ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH
Sbjct: 363 QWNWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAA 184
Query: 693 ERXXXXXXXXXXXXXXTLVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRW 514
ER TLVTSTRLK EWPL+V MPPF HATLR*ETGTMPA *SAMRW
Sbjct: 183 ERVDLTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRW 4
Query: 513 N 511
N
Sbjct: 3 N 1
Score = 127 bits (273), Expect(3) = 4e-032
Identities = 59/84 (70%), Positives = 68/84 (80%)
Frame = -1 / -3
Query: 763 LPVQERVALPVLAPVARQGLPPGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAA 584
LPV++RVALPVL PVA + LP A L G+RVHVAGA HVG Q+QVEV VA+D E AA
Sbjct: 253 LPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAA 74
Query: 583 LLVARNPAVGDGNNAGPVERDALE 512
LL+AR+PAVGDG+NAG VERDALE
Sbjct: 73 LLLARHPAVGDGDNAGAVERDALE 2
Score = 44.6 bits (91), Expect(2) = 3e-074
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +1
Query: 917 VLVVPSTPIGACREAPWFYEWS 982
V+VV + PIGAC EAPWFY WS
Sbjct: 421 VVVVVNLPIGACWEAPWFYGWS 486
Score = 28.6 bits (56), Expect(2) = 1e-049
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 981 DHS*NHGASRQAPIG 937
D *NHGAS+ APIG
Sbjct: 485 DQP*NHGASQHAPIG 441
Score = 24.9 bits (48), Expect(3) = 4e-032
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 874 SVELGTAESLAERP 833
SVELG AE LAE P
Sbjct: 364 SVELGAAEGLAE*P 323
Score = 24.0 bits (46), Expect(3) = 4e-032
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3 / -3
Query: 1004 PRSKCEVQTIHKTMAPLGRLQSG 936
PR+ +T HKTMA LQSG
Sbjct: 508 PRTYA*GRTNHKTMALPSTLQSG 440
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 255 bits (551), Expect(2) = 3e-074
Identities = 104/121 (85%), Positives = 110/121 (90%)
Frame = +2 / +2
Query: 512 FQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADR 691
FQRIALYRAGIVPVSYRRVAC KKGGIRFTINGHSYFNLVLVTNV G GDVHAV+VK+ R
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTR 181
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQFN 871
S WQALSRNWGQNWQSN LLDGQ LSFRVT +G+SV+SNNA PRGWSFGQTFSGAQF+
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQFH 361
Query: 872 * 874
*
Sbjct: 362 * 364
Score = 188 bits (406), Expect(2) = 1e-049
Identities = 81/121 (66%), Positives = 86/121 (71%)
Frame = -2 / -1
Query: 873 QLNWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPG 694
Q NWAPLKVWP DQPRG ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH
Sbjct: 363 QWNWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAA 184
Query: 693 ERXXXXXXXXXXXXXXTLVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRW 514
ER TLVTSTRLK EWPL+V MPPF HATLR*ETGTMPA *SAMRW
Sbjct: 183 ERVDLTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRW 4
Query: 513 N 511
N
Sbjct: 3 N 1
Score = 127 bits (273), Expect(3) = 4e-032
Identities = 59/84 (70%), Positives = 68/84 (80%)
Frame = -1 / -3
Query: 763 LPVQERVALPVLAPVARQGLPPGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAA 584
LPV++RVALPVL PVA + LP A L G+RVHVAGA HVG Q+QVEV VA+D E AA
Sbjct: 253 LPVEQRVALPVLPPVA*ERLPRRRARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAA 74
Query: 583 LLVARNPAVGDGNNAGPVERDALE 512
LL+AR+PAVGDG+NAG VERDALE
Sbjct: 73 LLLARHPAVGDGDNAGAVERDALE 2
Score = 44.6 bits (91), Expect(2) = 3e-074
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +1
Query: 917 VLVVPSTPIGACREAPWFYEWS 982
V+VV + PIGAC EAPWFY WS
Sbjct: 421 VVVVVNLPIGACWEAPWFYGWS 486
Score = 28.6 bits (56), Expect(2) = 1e-049
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 981 DHS*NHGASRQAPIG 937
D *NHGAS+ APIG
Sbjct: 485 DQP*NHGASQHAPIG 441
Score = 24.9 bits (48), Expect(3) = 4e-032
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 874 SVELGTAESLAERP 833
SVELG AE LAE P
Sbjct: 364 SVELGAAEGLAE*P 323
Score = 24.0 bits (46), Expect(3) = 4e-032
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3 / -3
Query: 1004 PRSKCEVQTIHKTMAPLGRLQSG 936
PR+ +T HKTMA LQSG
Sbjct: 508 PRTYA*GRTNHKTMALPSTLQSG 440
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 203 bits (437), Expect(2) = 4e-074
Identities = 76/95 (80%), Positives = 85/95 (89%)
Frame = +2 / +2
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 305 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 484
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDV 664
RRV C KKGGIRFTINGHSYFNLVLVTNV GAGDV
Sbjct: 485 RRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 130 bits (278), Expect(3) = 4e-040
Identities = 61/88 (69%), Positives = 64/88 (72%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVTSTRLK*EWPLMV +PPF TLR*ETGTMPA * + G MSK ARGGLHQP
Sbjct: 567 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKCARGGLHQP 388
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 387 PSSLGSA*LGGQRLVAVMVMLPGTHELP 304
Score = 96.4 bits (204), Expect(2) = 4e-074
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +2
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 122 GSWQTAHATFYGGGEASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 301
Query: 362 DAA 370
+
Sbjct: 302 QGS 310
Score = 45.1 bits (92), Expect(3) = 4e-040
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -2
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 214 AVQVPVAARAAHCAGRLAAAVEGGVCGLPRA 122
Score = 28.6 bits (56), Expect(3) = 4e-040
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 242 APPCSCRNPCCTG 204
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 174 bits (374), Expect(2) = 2e-066
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2 / +1
Query: 398 GSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACN 577
GS +VTATN CP N A ++DGGWCNPP++HFD+++PVF RIA RAG+VPV YRRVAC
Sbjct: 1 GSAMVTATNLCPANYARANNDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACV 180
Query: 578 KKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKA 685
K GGIRFTI GHSYFNLVL+TNV GAGD+ +V VKA
Sbjct: 181 KTGGIRFTITGHSYFNLVLITNVAGAGDLMSVYVKA 288
Score = 100 bits (214), Expect(2) = 1e-033
Identities = 50/81 (61%), Positives = 53/81 (65%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LV STRLK*EWP+MV RMPP L HATL TGT PA A+ NTG SK GGLH P
Sbjct: 245 LVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGSARSKCDCGGLHHP 66
Query: 462 PSSXGSALLGGQKLVAVTTTE 400
PS A L GQ+LVAVT E
Sbjct: 65 PSLLARA*LAGQRLVAVTMAE 3
Score = 99.6 bits (211), Expect(2) = 2e-066
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / +1
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTF 853
S GW +S NWG NWQ+ +L+GQ LSFRVTTSDGR+ SNN AP GW+FGQTF
Sbjct: 292 STGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
Score = 63.4 bits (132), Expect(2) = 1e-033
Identities = 29/52 (55%), Positives = 30/52 (57%)
Frame = -2 / -3
Query: 852 KVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
KVWPK QP GA LL+ RPSLVVTRKD P CQ PQL HP
Sbjct: 452 KVWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHP 297
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 207 bits (446), Expect(3) = 2e-064
Identities = 77/105 (73%), Positives = 90/105 (85%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 66 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 245
Query: 560 RRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
RRV C KKGG+RFTINGHSYFNLVL TNV GAGDV +V++K S
Sbjct: 246 RRVPCVKKGGMRFTINGHSYFNLVLXTNVAGAGDVQSVSIKGSSS 380
Score = 133 bits (284), Expect(2) = 6e-038
Identities = 61/88 (69%), Positives = 63/88 (71%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LV STRLK*EWPLMV PPF TLR*ETGTMPA * + G MSKWARGGLHQP
Sbjct: 328 LVXSTRLK*EWPLMVNLXPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 149
Query: 462 PSSXGSALLGGQKLVAVTTTEPGRHERP 379
PSS GSA LGGQ+LVAV PG HE P
Sbjct: 148 PSSLGSA*LGGQRLVAVMVMLPGTHELP 65
Score = 48.7 bits (100), Expect(3) = 2e-064
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / +3
Query: 692 SPGWQALSRNWGQNWQSN 745
S GWQA+SRNWGQNWQSN
Sbjct: 375 SSGWQAMSRNWGQNWQSN 428
Score = 45.5 bits (93), Expect(2) = 6e-038
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -2 / -3
Query: 744 LLCQFWPQLRDRACHP 697
LLCQFWPQLRD ACHP
Sbjct: 427 LLCQFWPQLRDMACHP 380
Score = 29.9 bits (59), Expect(3) = 2e-064
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +2 / +3
Query: 320 NNGLSCGACFEVRCDAA 370
N+G +CG+C+E++C +
Sbjct: 21 NDGAACGSCYELKCQGS 71
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 167 bits (359), Expect(2) = 2e-063
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +2 / +2
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +T TN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAGIVPVSY
Sbjct: 353 GSSCVPGSITITGTNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSY 532
Query: 560 RRVACNKKGGIRFTINGHSY 619
R+V C KKGG+RFTINGHSY
Sbjct: 533 RKVPCVKKGGMRFTINGHSY 592
Score = 112 bits (240), Expect(3) = 3e-035
Identities = 52/83 (62%), Positives = 57/83 (68%)
Frame = -2 / -2
Query: 627 RLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXG 448
++K*E PLMV +PPF T R*ETGTMPA * + G MSKWARGGLHQPPSS G
Sbjct: 600 QVK*ECPLMVNLIPPFFTQGTFR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLG 421
Query: 447 SALLGGQKLVAVTTTEPGRHERP 379
SA LGGQ+LV V PG HE P
Sbjct: 420 SA*LGGQRLVPVMVMLPGTHELP 352
Score = 96.4 bits (204), Expect(2) = 2e-063
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +2
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 170 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 349
Query: 362 DAA 370
+
Sbjct: 350 QGS 358
Score = 46.0 bits (94), Expect(3) = 3e-035
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -1
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 262 AVQVPVAARAAHCAGRVAAAVEGGVGGLPRA 170
Score = 28.6 bits (56), Expect(3) = 3e-035
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -3
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 290 APPCSCRNPCCTG 252
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 150 bits (323), Expect(2) = 5e-062
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +2 / +1
Query: 455 DDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVL 634
DDGGWCNPP++HFD+++PVF RIA RAG+VPV YRRVAC K GGIRFTI GHSYFNLVL
Sbjct: 10 DDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVL 189
Query: 635 VTNVEGAGDVHAVAVKA 685
+TNV GAGD+ +V VKA
Sbjct: 190 ITNVAGAGDLMSVYVKA 240
Score = 108 bits (230), Expect(2) = 5e-062
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +2 / +1
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
S GW +S NWG NWQ+ +L+GQ LSFRVTTSDGR+ SNN AP GW+FGQTF+G+QF
Sbjct: 244 STGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTFAGSQF 420
Score = 85.4 bits (180), Expect(2) = 4e-032
Identities = 41/63 (65%), Positives = 43/63 (68%)
Frame = -2 / -1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LV STRLK*EWP+MV RMPP L HATL TGT PA A+ NTG SK GGLH P
Sbjct: 197 LVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGSARSKCDCGGLHHP 18
Query: 462 PSS 454
PSS
Sbjct: 17 PSS 9
Score = 73.5 bits (154), Expect(2) = 4e-032
Identities = 32/57 (56%), Positives = 33/57 (57%)
Frame = -2 / -1
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NW P KVWPK QP GA LL+ RPSLVVTRKD P CQ PQL HP
Sbjct: 419 NWLPAKVWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHP 249
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 167 bits (359), Expect(2) = 7e-062
Identities = 59/81 (72%), Positives = 71/81 (87%)
Frame = +2 / +2
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHF M++P + +I +YRAGIVPVSY
Sbjct: 191 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFXMAEPAYLQIGIYRAGIVPVSY 370
Query: 560 RRVACNKKGGIRFTINGHSYF 622
RRV C KKGG+RFT+NGH+YF
Sbjct: 371 RRVPCVKKGGMRFTMNGHAYF 433
Score = 117 bits (251), Expect(3) = 2e-035
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = -2 / -3
Query: 627 RLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXG 448
RLK* WP +V +PPF TLR*ETGTMPA * + G M KWARGGLHQPPSS G
Sbjct: 438 RLK*AWPFIVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMXKWARGGLHQPPSSLG 259
Query: 447 SALLGGQKLVAVTTTEPGRHERP 379
SA LGGQ+LVAV PG HE P
Sbjct: 258 SA*LGGQRLVAVMVMLPGTHELP 190
Score = 91.3 bits (193), Expect(2) = 7e-062
Identities = 34/63 (53%), Positives = 41/63 (65%)
Frame = +2 / +2
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG C+ ++C
Sbjct: 8 GGWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLKC 187
Query: 362 DAA 370
+
Sbjct: 188 QGS 196
Score = 41.8 bits (85), Expect(3) = 2e-035
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -1 / -2
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGP 188
AV+V V R AH AGR+AAAVEGGV P
Sbjct: 100 AVQVPVAARAAHCAGRVAAAVEGGVGGLP 14
Score = 28.6 bits (56), Expect(3) = 2e-035
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 128 APPCSCRNPCCTG 90
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 120 bits (257), Expect(3) = 4e-061
Identities = 52/80 (65%), Positives = 57/80 (71%)
Frame = +2 / +3
Query: 506 PVFQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKA 685
P R RAGIVPVSYRRV C KKGG+RFTINGHSYFNLVLVTNV GAGDV +V +K
Sbjct: 357 PPTSRSVSTRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKG 536
Query: 686 DRSPGWQALSRNWGQNWQSN 745
+ + S GQNWQSN
Sbjct: 537 SKLRVGRPCSATGGQNWQSN 596
Score = 96.4 bits (204), Expect(3) = 4e-061
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +1
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 46 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 225
Query: 362 DAA 370
+
Sbjct: 226 QGS 234
Score = 71.2 bits (149), Expect(5) = 8e-032
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = -1 / -3
Query: 667 VHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAG 536
+HVAGA HVGH++QVEVGVAVDGE + ALL +P VG+G++AG
Sbjct: 518 LHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAG 387
Score = 57.9 bits (120), Expect(3) = 4e-061
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2 / +2
Query: 425 FCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALY 532
F P P+ GWCNPPRAHFDM++P + +I +Y
Sbjct: 275 FARPTTRCPTTTSGWCNPPRAHFDMAEPAYLQIGIY 382
Score = 56.5 bits (117), Expect(5) = 3e-031
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDD 460
G SC+PGS+ +TATN CPPN ALP+DD
Sbjct: 229 GSSCVPGSITITATNLCPPNYALPNDD 309
Score = 51.0 bits (105), Expect(5) = 3e-031
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +2
Query: 538 RHCSRLLPQGCVQQEGRHTFHHQRPLLLQP 627
RH +R LP+G + +EGR HHQRPLLLQP
Sbjct: 389 RHRARFLPEGALCEEGRDEVHHQRPLLLQP 478
Score = 46.0 bits (94), Expect(5) = 8e-032
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -2
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 138 AVQVPVAARAAHCAGRVAAAVEGGVGGLPRA 46
Score = 40.5 bits (82), Expect(5) = 3e-031
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1 / +3
Query: 262 QPLQPGVRHQHGGAEHGA 315
+P+Q G+RH+HGGAEHGA
Sbjct: 126 EPVQHGLRHEHGGAEHGA 179
Score = 40.0 bits (81), Expect(5) = 8e-032
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2 / -2
Query: 507 GCDMSKWARGGLHQPPSSXGSALLGGQKL 421
G MSKWARGGLHQP G ++G K+
Sbjct: 357 GSAMSKWARGGLHQPLVVVGQRVVGRAKV 271
Score = 36.3 bits (73), Expect(5) = 3e-031
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 183 ARGPRLTPPSTAAAMRPAPW 242
ARG TPPSTAAA RPA W
Sbjct: 47 ARGRPPTPPSTAAATRPAQW 106
Score = 28.6 bits (56), Expect(5) = 8e-032
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 166 APPCSCRNPCCTG 128
Score = 24.4 bits (47), Expect(5) = 8e-032
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -1
Query: 744 LLCQFWPQLRD 712
LLCQFWP + +
Sbjct: 595 LLCQFWPPVAE 563
Score = 24.0 bits (46), Expect(5) = 3e-031
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 689 RSPGWQALSRNWG 727
++PG +A+ RNWG
Sbjct: 539 QAPGGKAMFRNWG 577
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 165 bits (355), Expect(2) = 2e-060
Identities = 61/98 (62%), Positives = 78/98 (79%)
Frame = +2 / +3
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+ +TATNFCPPN AL SD+GGWCNPPR HFDMSQP ++ IA+Y+AGIVPV+Y+RV C +
Sbjct: 318 SITITATNFCPPNYALASDNGGWCNPPRQHFDMSQPAWETIAIYQAGIVPVNYKRVPCQR 497
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
GG+RFTING+ YF LV V NV G+G V + +K ++
Sbjct: 498 SGGMRFTINGNDYFELVTVANVGGSGVVSQMWIKGSKT 611
Score = 88.1 bits (186), Expect(2) = 2e-060
Identities = 34/61 (55%), Positives = 38/61 (62%)
Frame = +2 / +3
Query: 188 WSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDA 367
W A ATFY YGNLY+ GYG N+AALSTALFNNG SCG CF + CDA
Sbjct: 108 WMPAFATFYGGSDASDTMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCFTITCDA 287
Query: 368 A 370
+
Sbjct: 288 S 290
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 142 bits (305), Expect(2) = 3e-060
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = +2 / +1
Query: 470 CNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVE 649
CNPPR HFDM++P F I YRAGIVPVSYRRV C KKGGIRFTINGHSYFNLVLVTNV
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 650 GAGDVHAVAVKADRS 694
GAGD +V++K R+
Sbjct: 181 GAGDARSVSIKGTRT 225
Score = 110 bits (235), Expect(2) = 3e-060
Identities = 43/57 (75%), Positives = 46/57 (80%)
Frame = +2 / +1
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
GWQA+SRNWG NWQS T LDGQ LSFRVT+SDGR+V SN A P GW F QTF GAQF
Sbjct: 226 GWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAGWQFRQTF*GAQF 396
Score = 92.3 bits (195), Expect(2) = 3e-038
Identities = 41/57 (71%), Positives = 41/57 (71%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGL 472
LVTSTRLK*EWPLMV RMPPF H TL *ETGTMPA M G MSKW RGGL
Sbjct: 173 LVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCPMWRKAGSAMSKWGRGGL 3
Score = 87.2 bits (184), Expect(2) = 3e-038
Identities = 37/57 (64%), Positives = 39/57 (68%)
Frame = -2 / -3
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NWAP KVW QP G A L T RPSL VT K+R PSR V+LCQF PQLRD AC P
Sbjct: 395 NWAP*KVWRNCQPAGPAALLVTVRPSLEVTLKERHWPSRKVMLCQFMPQLRDMACQP 225
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 86.8 bits (183), Expect(4) = 1e-058
Identities = 32/62 (51%), Positives = 41/62 (66%)
Frame = +2 / +3
Query: 185 AWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCD 364
+W +AHATFY Y NLYS GYGTNTAALSTALFN+ +CG+C+E++C
Sbjct: 177 SWQTAHATFYGGGDASGTMGGACCYRNLYSTGYGTNTAALSTALFNDSAACGSCYELKCQ 356
Query: 365 AA 370
+
Sbjct: 357 GS 362
Score = 83.1 bits (175), Expect(4) = 1e-058
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 425 FCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPV 553
F P ALP+D GGWCNPPRAHFDM++P + +I +YRAGIVPV
Sbjct: 403 FARPTYALPNDHGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPV 531
Score = 71.6 bits (150), Expect(4) = 1e-058
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = +2 / +2
Query: 548 PVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDV 664
P SYRR C KKGG+RFTINGHSYFNL L TNV GAG++
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNM 643
Score = 57.9 bits (120), Expect(5) = 2e-031
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = -2 / -3
Query: 555 ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQKL 421
+TGTMPA * + G MSKWARGGLHQPP S GSA +G K+
Sbjct: 533 KTGTMPAR*IPIWR*AGSAMSKWARGGLHQPPWSLGSA*VGRAKV 399
Score = 49.6 bits (102), Expect(5) = 2e-031
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = -1 / -1
Query: 664 HVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVG 554
HVAGA HVG + QV+VGVAVDGE + A L P VG
Sbjct: 643 HVAGAGHVGLKPQVKVGVAVDGEPHPAFLHTGPPPVG 533
Score = 46.0 bits (94), Expect(5) = 2e-031
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -3
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 266 AVQVPVAARAAHCAGRVAAAVEGGVGGLPRA 174
Score = 42.8 bits (87), Expect(4) = 1e-058
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPN 439
G SC+PGS+ +T TN CPPN
Sbjct: 357 GSSCVPGSITITVTNLCPPN 416
Score = 30.4 bits (60), Expect(5) = 2e-031
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2 / -1
Query: 438 LGGQKLVAVTTTEPGRHERP 379
LGGQ+LV V PG HE P
Sbjct: 415 LGGQRLVTVMVMLPGTHELP 356
Score = 24.9 bits (48), Expect(5) = 2e-031
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3 / -2
Query: 302 APPCWCRTPGCRG 264
AP C CR P C G
Sbjct: 294 APQCSCRNPCCTG 256
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 144 bits (308), Expect(2) = 2e-058
Identities = 57/85 (67%), Positives = 64/85 (75%)
Frame = +2 / +1
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+VVTATNFCPPN ALPSDDGGWCNPPR HFD++ P+F +A YRAGIVPV YRRVAC K
Sbjct: 397 SIVVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHMAQYRAGIVPVCYRRVACRK 576
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGA 655
GG+RFTI +L L GA
Sbjct: 577 SGGVRFTIERVQSSDLRLEKTRRGA 651
Score = 102 bits (218), Expect(2) = 2e-058
Identities = 40/61 (65%), Positives = 41/61 (67%)
Frame = +2 / +1
Query: 179 GGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVR 358
GG W SAHATFY YGNLYSQGYG N AALSTALFN G SCGACFE+R
Sbjct: 172 GGDWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGACFEIR 351
Query: 359 C 361
C
Sbjct: 352 C 354
Score = 101 bits (216), Expect(2) = 1e-030
Identities = 47/68 (69%), Positives = 49/68 (72%)
Frame = -2 / -2
Query: 603 MVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQK 424
MV R PP HAT R*+TGTMPA AM N G SKW RGGLHQPPSS GSA LGGQK
Sbjct: 599 MVNRTPPDFRHATRR*QTGTMPARYWAMWRNMGMARSKWGRGGLHQPPSSEGSA*LGGQK 420
Query: 423 LVAVTTTE 400
LVAVTT +
Sbjct: 419 LVAVTTMD 396
Score = 55.6 bits (115), Expect(2) = 1e-030
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -1 / -1
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
PLAV+V VP RPAHGAG +AAAVEGGV P A
Sbjct: 273 PLAVQVPVPARPAHGAGGVAAAVEGGVRALPVA 175
>gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009I04f, mRNA sequence
Length = 817
Score = 133 bits (286), Expect(5) = 8e-058
Identities = 53/81 (65%), Positives = 57/81 (70%)
Frame = +2 / +1
Query: 131 HRAQPHPRPHGHAPLGGGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALST 310
HR P H HAP+GGGAW+SAHATFY YGNLYS GYG+NTAALST
Sbjct: 163 HRHGPGIGHHAHAPIGGGAWASAHATFYGGGDASGTMGGACGYGNLYSTGYGSNTAALST 342
Query: 311 ALFNNGLSCGACFEVRCDAAG 373
ALFNNGLSCGACF+VRCD G
Sbjct: 343 ALFNNGLSCGACFKVRCDPGG 405
Score = 62.5 bits (130), Expect(5) = 8e-058
Identities = 24/39 (61%), Positives = 26/39 (66%)
Frame = +2 / +1
Query: 374 GGGRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAH 490
G + LPGS V TATNFCPPN D GGWCNP RA+
Sbjct: 415 GAPHAWLPGSTVETATNFCPPNLCESYDAGGWCNPSRAN 531
Score = 60.6 bits (126), Expect(6) = 1e-044
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = -1 / -2
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRATSERCVAV 158
P AVEV V RPAHGAG + AAVEGGVS P AT++R V V
Sbjct: 312 PRAVEVPVAARPAHGAGSVTAAVEGGVSGRPGATADRRVGV 190
Score = 52.4 bits (108), Expect(6) = 1e-044
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = -2 / -3
Query: 486 ARGGLHQPPSSXGSALLGGQKLVAVTTTEPG 394
AR GLH PP+S S LGGQKLVAV+T EPG
Sbjct: 527 AREGLHHPPASYDSHKLGGQKLVAVSTVEPG 435
Score = 51.9 bits (107), Expect(6) = 1e-044
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = -2 / -1
Query: 585 PFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGG 475
PF HA+LR*E GTMPA *S MRW DMS W G
Sbjct: 625 PFSGHASLR*ERGTMPAR*STMRWTLRWDMSSWLGKG 515
Score = 50.6 bits (104), Expect(5) = 8e-058
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +2 / +3
Query: 476 PPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKG 586
P + DMSQ QRI L RAGIVP+SYRR AC +KG
Sbjct: 516 PFPSQLDMSQRSVQRIVL*RAGIVPLSYRREACPEKG 626
Score = 46.0 bits (94), Expect(6) = 1e-044
Identities = 20/38 (52%), Positives = 20/38 (52%)
Frame = -2 / -3
Query: 372 PAASHRTSKQAPQLRPXXXXXXXXXXXXVPYPWL*RLP 259
P SHRT KQAPQLRP PYP L*R P
Sbjct: 404 PPGSHRTLKQAPQLRPLLKSAVLRAAVLEPYPVL*RFP 291
Score = 35.0 bits (70), Expect(6) = 1e-044
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1 / -2
Query: 139 GAVVAKPQPAREGEREQRGEDHDREDGLARRHWIG 35
G V A P P + REQRG + E RHW G
Sbjct: 147 GQVRATPLPTGQSGREQRGHEEGEEGCSGGRHWHG 43
Score = 27.6 bits (54), Expect(5) = 8e-058
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2 / +1
Query: 578 KKGGIRFTINGHSYFNLVLVTNV 646
KKG + T NGHS NL TN+
Sbjct: 619 KKGRVMVTSNGHSSLNLGRGTNL 687
Score = 25.8 bits (50), Expect(6) = 1e-044
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPF 580
LV R K EWPL+V PF
Sbjct: 683 LVPRPRFKDEWPLLVTITRPF 621
Score = 24.9 bits (48), Expect(5) = 8e-058
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2 / +1
Query: 41 PMAPRQXXXXXXXXXXXXPFALSRGLRLGHH 133
PMAP + P ALSRG G H
Sbjct: 49 PMAPARAALLALLVAALLPPALSRGQGRGPH 141
>gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 3', mRNA sequence
Length = 710
Score = 199 bits (428), Expect(3) = 2e-057
Identities = 80/96 (83%), Positives = 86/96 (89%)
Frame = +2 / -1
Query: 587 GIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQNWQSNTLLDGQA 766
GIRFTINGHSYFNLVLVTNV G GDVHAV+VK+ RS WQALSRNWGQNWQSN LLDGQ
Sbjct: 710 GIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQG 531
Query: 767 LSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQFN* 874
LSFRVT +G+SV+SNNA PRGWSFGQTFSGAQF+*
Sbjct: 530 LSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQFH* 423
Score = 135 bits (290), Expect(2) = 1e-033
Identities = 58/95 (61%), Positives = 63/95 (66%)
Frame = -2 / +1
Query: 873 QLNWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPG 694
Q NWAPLKVWP DQPRG ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH
Sbjct: 424 QWNWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAA 603
Query: 693 ERXXXXXXXXXXXXXXTLVTSTRLK*EWPLMVKRM 589
ER TLVTSTRLK EWPL+V M
Sbjct: 604 ERVDLTDTACTSPGPPTLVTSTRLKYEWPLIVNLM 708
Score = 44.6 bits (91), Expect(3) = 2e-057
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / -3
Query: 917 VLVVPSTPIGACREAPWFYEWS 982
V+VV + PIGAC EAPWFY WS
Sbjct: 366 VVVVVNLPIGACWEAPWFYGWS 301
Score = 28.6 bits (56), Expect(2) = 1e-033
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 981 DHS*NHGASRQAPIG 937
D *NHGAS+ APIG
Sbjct: 302 DQP*NHGASQHAPIG 346
Score = 23.5 bits (45), Expect(3) = 2e-057
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -1
Query: 1144 AALYHPPI 1167
AALYHPPI
Sbjct: 134 AALYHPPI 111
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 222 bits (479), Expect = 4e-057
Identities = 80/136 (58%), Positives = 105/136 (77%)
Frame = +2 / +1
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
+V VTATNFCPPNNALP+D+GGWCNPPR HFDM+QP +++I +YR GI+PV Y+RV C K
Sbjct: 187 TVTVTATNFCPPNNALPNDNGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPVMYQRVPCVK 366
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQNWQSNTLLDG 760
+GG+RF +NGH YFNLVLV+NV AG + ++ VK S W ++RNWG NW S L G
Sbjct: 367 RGGVRFKMNGHDYFNLVLVSNVAAAGSIQSMDVKCSDSEDWMPMARNWGANWHSLANLTG 546
Query: 761 QALSFRVTTSDGRSVL 808
+ L+FR+T SDG +++
Sbjct: 547 KMLAFRLTNSDGHTLV 594
Score = 117 bits (250), Expect = 1e-025
Identities = 62/131 (47%), Positives = 69/131 (52%)
Frame = -2 / -2
Query: 795 PSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPGERXXXXXXXXXXXXXXTLVTSTRLK* 616
PSL+V+ K P R CQ PQLR E TL+TSTRLK*
Sbjct: 581 PSLLVSLKASILPVRLASECQLAPQLRAIGIQSSESEHLTSMDWIEPAAATLLTSTRLK* 402
Query: 615 EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALL 436
P ++ PP H TL TG MP L*+ + GC MSK RGGLHQPP S G ALL
Sbjct: 401 S*PFILNLTPPRFTHGTLWYMTGMMPPL*TPIFSQAGCAMSKCGRGGLHQPPLSLGRALL 222
Query: 435 GGQKLVAVTTT 403
GGQK VAVT T
Sbjct: 221 GGQKFVAVTVT 189
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 122 bits (260), Expect(2) = 6e-057
Identities = 46/57 (80%), Positives = 49/57 (85%)
Frame = +2 / +2
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
GWQA+SRNWG NWQSNT LDGQ LSFRVT+SDGR+V SN AAP GW FGQTF GAQF
Sbjct: 200 GWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 370
Score = 120 bits (256), Expect(2) = 6e-057
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +2 / +2
Query: 497 MSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVA 676
M++P F IA YRAGIVPVSYRRV C KKGGIRFTINGHSYFNLVLVTNV GAGD +V+
Sbjct: 2 MAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVS 181
Query: 677 VKADRS 694
+K R+
Sbjct: 182 IKGTRT 199
Score = 95.5 bits (202), Expect(2) = 1e-040
Identities = 40/57 (70%), Positives = 41/57 (71%)
Frame = -2 / -3
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NWAP KVWP QP GAA L T RPSL VT K+R PSR VLLCQF PQLRD AC P
Sbjct: 369 NWAPSKVWPNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQP 199
Score = 92.3 bits (195), Expect(2) = 1e-040
Identities = 43/68 (63%), Positives = 48/68 (70%)
Frame = -1 / -2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAVGDGNNAGPVERD 521
P GA L G+ VAGA HVGHQ+QVEVGVAVDGE A LL AR+P+VGDG +AG V RD
Sbjct: 205 PAGARALDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPLLHARHPSVGDGYDAGAVLRD 26
Query: 520 ALEHGLRH 497
E L H
Sbjct: 25 VEEGRLGH 2
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 151 bits (325), Expect(2) = 2e-054
Identities = 58/92 (63%), Positives = 72/92 (78%)
Frame = +2 / -3
Query: 419 TNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRF 598
TNFCPPN ALPS++GGWCNPPR HFDMSQP + IA+Y+AGIVPV Y+RV+C K+ GIRF
Sbjct: 530 TNFCPPNWALPSNNGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRF 351
Query: 599 TINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
I+G YF LV+VTNV G+G V + +K +
Sbjct: 350 GISGRDYFELVVVTNVGGSGVVVQMWIKGSNT 255
Score = 97.3 bits (206), Expect(2) = 3e-026
Identities = 47/75 (62%), Positives = 48/75 (64%)
Frame = -2 / +1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
LVT+T K* P M KRMP TL TGTMPA * AM GCDMSKW RGGLH P
Sbjct: 307 LVTTTSSK*SLPEMPKRMPSRFWQETLLYMTGTMPAW*MAMLVQAGCDMSKWRRGGLHHP 486
Query: 462 PSSXGSALLGGQKLV 418
P GSA LGGQKLV
Sbjct: 487 PLLLGSAQLGGQKLV 531
Score = 82.2 bits (173), Expect(2) = 2e-054
Identities = 30/52 (57%), Positives = 36/52 (69%)
Frame = +2 / -3
Query: 701 WQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFS 856
W A+SRNWG NWQSN L+GQ LSFRV DGR +++ AP W FG T+S
Sbjct: 251 WLAMSRNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYS 96
Score = 41.8 bits (85), Expect(2) = 3e-026
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = -2 / +1
Query: 855 LKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLR 715
L V P Q GA L RPS +T K+ P R LLCQF PQ R
Sbjct: 97 LYVAPNHQLDGATSLAVASRPSSSLTLKESLWPLR*ALLCQFAPQFR 237
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 125 bits (267), Expect(2) = 6e-054
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVS 556
G SC PGS++VTATNFCPPN LPSDDGGWCNPPR HFDM++P F IA YRAGIVPVS
Sbjct: 345 GSSCRPGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 521
Score = 106 bits (227), Expect(2) = 6e-054
Identities = 42/70 (60%), Positives = 47/70 (67%)
Frame = +2 / +3
Query: 176 GGGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEV 355
G G W SAHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E+
Sbjct: 150 GYGGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYEL 329
Query: 356 RCDAAGGGGR 385
RCD AG R
Sbjct: 330 RCDNAGSSCR 359
Score = 94.1 bits (199), Expect(3) = 7e-032
Identities = 41/59 (69%), Positives = 42/59 (71%)
Frame = -2 / -3
Query: 555 ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQKLVAVTTTEPGRHERP 379
ETGTMPA AM G MSKW RGGLHQPPSS G LGGQKLVAVT +PGRHE P
Sbjct: 520 ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMDPGRHELP 344
Score = 49.6 bits (102), Expect(3) = 7e-032
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -1 / -2
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRATS 176
P AV+V VP RPAH AG +AAAVEGG+ P A +
Sbjct: 254 PSAVQVTVPARPAHRAGGVAAAVEGGMGALPPAVA 150
Score = 32.2 bits (64), Expect(3) = 7e-032
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2 / -3
Query: 372 PAASHRTSKQAPQLRPXXXXXXXXXXXXVPYPWL*RLPY 256
PA S R+S P P VPYP L RLPY
Sbjct: 346 PALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPY 230
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 122 bits (262), Expect(2) = 2e-053
Identities = 45/62 (72%), Positives = 50/62 (80%)
Frame = +2 / +3
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSY 559
G SC GS++VTATNFCPPN LPSDDGGWCNPPR HFDM++P F IA YRAGIVP Y
Sbjct: 366 GSSCRAGSIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPCFY 545
Query: 560 RR 565
R+
Sbjct: 546 RK 551
Score = 107 bits (228), Expect(2) = 2e-053
Identities = 42/71 (59%), Positives = 48/71 (67%)
Frame = +2 / +3
Query: 176 GGGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEV 355
G G W SAHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E+
Sbjct: 171 GYGGWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYEL 350
Query: 356 RCDAAGGGGRS 388
RCD AG R+
Sbjct: 351 RCDNAGSSCRA 383
Score = 86.8 bits (183), Expect(3) = 1e-029
Identities = 39/60 (65%), Positives = 41/60 (68%)
Frame = -2 / -2
Query: 558 *ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQKLVAVTTTEPGRHERP 379
*+ GTMPA AM G MSKW RGGLH PPSS GS LGGQKLVAVT +P RHE P
Sbjct: 544 *KQGTMPARYCAM*RKAGSAMSKWGRGGLHHPPSSLGSP*LGGQKLVAVTMMDPARHELP 365
Score = 49.6 bits (102), Expect(3) = 1e-029
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -1 / -1
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRATS 176
P AV+V VP RPAH AG +AAAVEGG+ P A +
Sbjct: 275 PSAVQVTVPARPAHRAGGVAAAVEGGMGALPPAVA 171
Score = 32.2 bits (64), Expect(3) = 1e-029
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2 / -2
Query: 372 PAASHRTSKQAPQLRPXXXXXXXXXXXXVPYPWL*RLPY 256
PA S R+S P P VPYP L RLPY
Sbjct: 367 PALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPY 251
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 143 bits (306), Expect(3) = 3e-052
Identities = 53/98 (54%), Positives = 74/98 (75%)
Frame = +2 / +3
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+VVTATNFCPPN P+D GG CNPP HF + F++IAL++AG++P+ YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
+GG+RF+++G S+F VL++NV GAGDV +V +K S
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDS 356
Score = 77.6 bits (163), Expect(3) = 3e-052
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +2 / +3
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
GW + RNWGQ W N L GQ +SF +T+SDG ++ + N P+ W FG+T++G QF
Sbjct: 357 GWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQF 527
Score = 66.1 bits (138), Expect(2) = 2e-021
Identities = 37/81 (45%), Positives = 41/81 (50%)
Frame = -2 / -2
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
L+ T K +P R PP H T R G PA SA+ N KW GGL P
Sbjct: 304 LLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWLGGLQTP 125
Query: 462 PSSXGSALLGGQKLVAVTTTE 400
P+S G LGGQKLVAVTT E
Sbjct: 124 PASAGKP*LGGQKLVAVTTME 62
Score = 56.5 bits (117), Expect(2) = 2e-021
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = -2 / -2
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
N P+ V P Q G L PSL V+ KD CP RS L+C WPQLR + P
Sbjct: 526 NCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQP 356
Score = 24.4 bits (47), Expect(3) = 3e-052
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2 / +3
Query: 335 CGACFEVRC 361
CG C+EV+C
Sbjct: 3 CGGCYEVKC 29
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 143 bits (306), Expect(3) = 3e-052
Identities = 53/98 (54%), Positives = 74/98 (75%)
Frame = +2 / +3
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+VVTATNFCPPN P+D GG CNPP HF + F++IAL++AG++P+ YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
+GG+RF+++G S+F VL++NV GAGDV +V +K S
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDS 356
Score = 77.6 bits (163), Expect(3) = 3e-052
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +2 / +3
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
GW + RNWGQ W N L GQ +SF +T+SDG ++ + N P+ W FG+T++G QF
Sbjct: 357 GWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQF 527
Score = 66.1 bits (138), Expect(2) = 2e-021
Identities = 37/81 (45%), Positives = 41/81 (50%)
Frame = -2 / -1
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
L+ T K +P R PP H T R G PA SA+ N KW GGL P
Sbjct: 304 LLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWLGGLQTP 125
Query: 462 PSSXGSALLGGQKLVAVTTTE 400
P+S G LGGQKLVAVTT E
Sbjct: 124 PASAGKP*LGGQKLVAVTTME 62
Score = 56.5 bits (117), Expect(2) = 2e-021
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = -2 / -1
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
N P+ V P Q G L PSL V+ KD CP RS L+C WPQLR + P
Sbjct: 526 NCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQP 356
Score = 24.4 bits (47), Expect(3) = 3e-052
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2 / +3
Query: 335 CGACFEVRC 361
CG C+EV+C
Sbjct: 3 CGGCYEVKC 29
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 139 bits (299), Expect(3) = 2e-051
Identities = 52/98 (53%), Positives = 73/98 (74%)
Frame = +2 / +1
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+VVTATNFCPPN P+D GG CNPP HF + F++IAL++AG++P+ YRRV C +
Sbjct: 181 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 360
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
+GG+RF+++G S+F VL++NV GAGDV + +K S
Sbjct: 361 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSRKIKGTDS 474
Score = 54.2 bits (112), Expect(3) = 2e-051
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2 / +1
Query: 257 YGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
+G+L GYG T LSTALF G +CG C+EV+C
Sbjct: 43 FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 147
Score = 48.3 bits (99), Expect(3) = 2e-051
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +2 / +1
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGW 835
GW + RNWGQ W L GQ +SF +T DG + +N P+G+
Sbjct: 475 GWLYMGRNWGQIWVIIFDLTGQPVSFGLTLGDGATKTNNYRVPQGY 612
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 195 bits (420), Expect(2) = 1e-049
Identities = 71/126 (56%), Positives = 94/126 (74%)
Frame = +2 / +2
Query: 452 SDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKKGGIRFTINGHSYFNLV 631
SD GGWCNPPR HFDM+QP +++I +YR GI+P+ Y+RV C KKGG+RFTI+GH YF LV
Sbjct: 2 SDKGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLV 181
Query: 632 LVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLS 811
L TNV AG V A+ V+ +S W A++ NWG NW S L+GQ LSFRVT +DG++++
Sbjct: 182 LPTNVAAAGSVRAMDVRGSKSGDWMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVF 361
Query: 812 NNAAPR 829
++ PR
Sbjct: 362 SDVVPR 379
Score = 104 bits (221), Expect = 1e-021
Identities = 54/125 (43%), Positives = 63/125 (50%)
Frame = -2 / -3
Query: 828 RGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPGERXXXXXXXXXXXXX 649
RG +++ PS++VT K+ P R CQF PQL A +
Sbjct: 378 RGTTSEKTSVWPSVMVTLKESPWPLR*ARECQFAPQLCAMAIQSPDLEPLTSMALTEPAA 199
Query: 648 XTLVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLH 469
TLV ST K* WPLMV PPF H TL * G MP *+ + GC MSKW RGGLH
Sbjct: 198 ATLVGSTSWK*SWPLMVNLTPPFFTHGTLW*MMGMMPPR*TPIFSQAGCAMSKWGRGGLH 19
Query: 468 QPPSS 454
QPP S
Sbjct: 18 QPPLS 4
Score = 22.1 bits (42), Expect(2) = 1e-049
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2 / +3
Query: 833 WSFGQTFS 856
W FGQTFS
Sbjct: 384 WRFGQTFS 407
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 143 bits (306), Expect(2) = 4e-049
Identities = 53/98 (54%), Positives = 74/98 (75%)
Frame = +2 / +3
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
S+VVTATNFCPPN P+D GG CNPP HF + F++IAL++AG++P+ YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 581 KGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
+GG+RF+++G S+F VL++NV GAGDV +V +K S
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDS 356
Score = 73.0 bits (153), Expect(2) = 4e-049
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +2 / +3
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSG 859
GW + RNWGQ W N L GQ +SF +T+SDG ++ + N P+ W FG+T++G
Sbjct: 357 GWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTG 518
Score = 66.1 bits (138), Expect(2) = 6e-021
Identities = 37/81 (45%), Positives = 41/81 (50%)
Frame = -2 / -3
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQP 463
L+ T K +P R PP H T R G PA SA+ N KW GGL P
Sbjct: 304 LLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWLGGLQTP 125
Query: 462 PSSXGSALLGGQKLVAVTTTE 400
P+S G LGGQKLVAVTT E
Sbjct: 124 PASAGKP*LGGQKLVAVTTME 62
Score = 55.1 bits (114), Expect(2) = 6e-021
Identities = 24/54 (44%), Positives = 28/54 (51%)
Frame = -2 / -3
Query: 858 PLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
P+ V P Q G L PSL V+ KD CP RS L+C WPQLR + P
Sbjct: 517 PVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQP 356
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 113 bits (241), Expect(3) = 6e-049
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVP 550
G SC+PGS+ +TATN CP N AL +DDGGWCNPPRAHFDM++P + +I +YRAGIVP
Sbjct: 334 GSSCVPGSITITATNLCPANYALANDDGGWCNPPRAHFDMAKPAYLQIGIYRAGIVP 504
Score = 96.4 bits (204), Expect(3) = 6e-049
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +1
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 151 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 330
Query: 362 DAA 370
+
Sbjct: 331 QGS 339
Score = 77.1 bits (162), Expect(3) = 1e-024
Identities = 36/57 (63%), Positives = 38/57 (66%)
Frame = -2 / -1
Query: 549 GTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQKLVAVTTTEPGRHERP 379
GTMPA * + G MSKWARGGLHQPPSS SA L GQ+LVAV PG HE P
Sbjct: 503 GTMPAR*IPIWR*AGFAMSKWARGGLHQPPSSLASA*LAGQRLVAVMVMLPGTHELP 333
Score = 46.0 bits (94), Expect(3) = 1e-024
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -3
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 243 AVQVPVAARAAHCAGRVAAAVEGGVGGLPRA 151
Score = 28.6 bits (56), Expect(3) = 1e-024
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -2
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 271 APPCSCRNPCCTG 233
Score = 24.0 bits (46), Expect(3) = 6e-049
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2 / +2
Query: 548 PVSYRRVACNK 580
PVSYRRV C K
Sbjct: 503 PVSYRRVPCVK 535
>gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O14
5-PRIME, mRNA sequence
Length = 443
Score = 129 bits (277), Expect(2) = 1e-048
Identities = 44/72 (61%), Positives = 60/72 (83%)
Frame = +2 / +2
Query: 401 SVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNK 580
+V +TATN CP + + P+D+GGWCNPPR H DM+QP ++RI +YRAGIVPV ++RV C++
Sbjct: 227 TVTITATNLCPTDYSKPNDNGGWCNPPRKHLDMAQPAWERIGIYRAGIVPVLFQRVPCSR 406
Query: 581 KGGIRFTINGHS 616
GG+RFTINGH+
Sbjct: 407 SGGVRFTINGHA 442
Score = 85.4 bits (180), Expect(3) = 4e-024
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = -2 / -3
Query: 612 WPLMVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLG 433
WPLMV R PP L T TGTMPA * MR + GC MS+ RGGLHQPP S G
Sbjct: 438 WPLMVNRTPPLLEQGTRWNRTGTMPAR*MPMRSHAGCAMSRCLRGGLHQPPLSLGLE*SV 259
Query: 432 GQKLVAVTTT 403
GQ+LVAV T
Sbjct: 258 GQRLVAVMVT 229
Score = 84.5 bits (178), Expect(2) = 1e-048
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +2 / +2
Query: 188 WSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCD 364
W ATFY YGNLY+ GYGTNTAALST+LFN+G +CG C++V+CD
Sbjct: 17 WMRGSATFYGGSNAAGTMGGACGYGNLYATGYGTNTAALSTSLFNDGAACGECYQVQCD 193
Score = 38.2 bits (77), Expect(3) = 4e-024
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1 / -2
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGP 188
P V+VAVP AHGAG +A AVE G + P
Sbjct: 109 PRRVQVAVPASSAHGAGGVAPAVERGRAPHP 17
Score = 26.3 bits (51), Expect(3) = 4e-024
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3 / -1
Query: 302 APPCWCRTPGCRGC 261
APPC RTP GC
Sbjct: 131 APPCSSRTPSRTGC 90
>gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005F10f, mRNA sequence
Length = 947
Score = 168 bits (361), Expect(2) = 3e-048
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = +2 / +3
Query: 623 NLVLVTNVEGAGDVHAVAVKADRSPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRS 802
NLVLVTNV G GDVHAV+VK+ RS WQALSRNWGQNWQSN LLDGQ LSFRVT +G+S
Sbjct: 3 NLVLVTNVGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQS 182
Query: 803 VLSNNAAPRGWSFGQTFSGAQFN* 874
V+SNNA PRGWSFGQTFSGAQF+*
Sbjct: 183 VVSNNAVPRGWSFGQTFSGAQFH* 254
Score = 119 bits (254), Expect(2) = 8e-029
Identities = 51/84 (60%), Positives = 55/84 (65%)
Frame = -2 / -2
Query: 873 QLNWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPG 694
Q NWAPLKVWP DQPRG ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH
Sbjct: 253 QWNWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAA 74
Query: 693 ERXXXXXXXXXXXXXXTLVTSTRL 622
ER TLVTSTRL
Sbjct: 73 ERVDLTDTACTSPGPPTLVTSTRL 2
Score = 44.6 bits (91), Expect(2) = 3e-048
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +2
Query: 917 VLVVPSTPIGACREAPWFYEWS 982
V+VV + PIGAC EAPWFY WS
Sbjct: 311 VVVVVNLPIGACWEAPWFYGWS 376
Score = 28.6 bits (56), Expect(2) = 8e-029
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 981 DHS*NHGASRQAPIG 937
D *NHGAS+ APIG
Sbjct: 375 DQP*NHGASQHAPIG 331
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 114 bits (243), Expect(2) = 2e-047
Identities = 38/54 (70%), Positives = 47/54 (87%)
Frame = +2 / +1
Query: 380 GRSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAG 541
G SC+PGS+ +TATN CPPN ALP+DDGGWCNPPRAHFDM++P + +I +YRAG
Sbjct: 331 GSSCVPGSITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAG 492
Score = 96.4 bits (204), Expect(2) = 2e-047
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2 / +1
Query: 182 GAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 361
G+W +AHATFY YGNLYS GYGTNTAALSTALFN+G +CG+C+E++C
Sbjct: 148 GSWQTAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 327
Query: 362 DAA 370
+
Sbjct: 328 QGS 336
Score = 76.7 bits (161), Expect(3) = 1e-024
Identities = 32/43 (74%), Positives = 33/43 (76%)
Frame = -2 / -2
Query: 507 GCDMSKWARGGLHQPPSSXGSALLGGQKLVAVTTTEPGRHERP 379
G MSKWARGGLHQPPSS GSA LGGQ+LVAV PG HE P
Sbjct: 458 GSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVMLPGTHELP 330
Score = 46.0 bits (94), Expect(3) = 1e-024
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -1
Query: 274 AVEVAVPTRPAHGAGRIAAAVEGGVSRGPRA 182
AV+V V R AH AGR+AAAVEGGV PRA
Sbjct: 240 AVQVPVAARAAHCAGRVAAAVEGGVGGLPRA 148
Score = 28.6 bits (56), Expect(3) = 1e-024
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3 / -3
Query: 302 APPCWCRTPGCRG 264
APPC CR P C G
Sbjct: 268 APPCSCRNPCCTG 230
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 124 bits (266), Expect(2) = 6e-047
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = +2 / +1
Query: 692 SPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTFSGAQF 868
S GWQA+SRNWGQNWQSN LDGQ+LSFRVT SDGR+V SNNAAP GWSFGQTF G QF
Sbjct: 139 SSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 315
Score = 108 bits (230), Expect(2) = 8e-038
Identities = 44/57 (77%), Positives = 45/57 (78%)
Frame = -2 / -3
Query: 867 NWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
NW P KV PKDQP GAALL T RPSL VTRK+R PSRS LLCQFWPQLRD ACHP
Sbjct: 314 NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHP 144
Score = 84.0 bits (177), Expect(2) = 6e-047
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = +2 / +1
Query: 557 YRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
Y RV C KKGG+RFTINGHSYFNLVLVTNV GAGDV +V++K S
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSS 144
Score = 69.8 bits (146), Expect(2) = 8e-038
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = -1 / -2
Query: 700 PGGAVGLHGNRVHVAGAFHVGHQYQVEVGVAVDGETYAALLVARNPAV 557
P GA L G+ +HVAGA HVGH++QVEVGVAVDGE + ALL +PA+
Sbjct: 150 PPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPAI 7
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 94.1 bits (199), Expect(3) = 1e-046
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +2 / +2
Query: 698 GWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAAPRGWSFGQTF 853
GW +SRNWG NWQSN LL GQ+LSF+VT++DG+++ N AP GW FGQTF
Sbjct: 242 GWMPMSRNWGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
Score = 84.0 bits (177), Expect(3) = 1e-046
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2 / +2
Query: 539 GIVPVSYRRVACNKKGGIRFTINGHSYFNLVLVTNVEGAGDVHAVAVKADRS 694
GIVPV Y+RV C KKGG+RFT+NGH YF LVLV+NV G + +V++K R+
Sbjct: 86 GIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSRT 241
Score = 59.3 bits (123), Expect(3) = 4e-023
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = -2 / -2
Query: 852 KVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHP 697
KVWPK P GA L + PS++VT +R CP S L CQ PQ D HP
Sbjct: 396 KVWPKPHPAGATLGKVIVWPSVLVTWNERLCPLSSALDCQLTPQFLDMGIHP 241
Score = 47.8 bits (98), Expect(3) = 1e-046
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +2
Query: 401 SVVVTATNFCPPNNALPSDDGG 466
SV +TATN CPPN ALP+DDGG
Sbjct: 23 SVTITATNLCPPNYALPNDDGG 88
Score = 46.9 bits (96), Expect(3) = 4e-023
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = -2 / -2
Query: 642 LVTSTRLK*EWPLMVKRMPPFLLHATLR*ETGTMP 538
L+TST K* WPL V PPFL T * TGTMP
Sbjct: 189 LLTSTSSK*SWPLTVNLTPPFLAQGTRW*RTGTMP 85
Score = 40.0 bits (81), Expect(3) = 4e-023
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -2 / -2
Query: 465 PPSSXGSALLGGQKLVAVTTTEPGR 391
PPSS GSA LGGQ+LVAV TE R
Sbjct: 87 PPSSLGSA*LGGQRLVAVMVTEAPR 13
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 124 bits (266), Expect(2) = 2e-046
Identities = 46/68 (67%), Positives = 55/68 (80%)
Frame = +2 / +1
Query: 404 VVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACNKK 583
+ V+ATNFCPPN ALP GGWCNPPR HFDMSQP + IA+Y+AGIVPV Y+RV+C K+
Sbjct: 367 ITVSATNFCPPNWALPRTTGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKR 546
Query: 584 GGIRFTIN 607
GIRF I+
Sbjct: 547 DGIRFGIS 570
Score = 89.5 bits (189), Expect(3) = 1e-024
Identities = 42/65 (64%), Positives = 42/65 (64%)
Frame = -2 / -3
Query: 603 MVKRMPPFLLHATLR*ETGTMPAL*SAMRWNTGCDMSKWARGGLHQPPSSXGSALLGGQK 424
M KRMP TL TGTMPA * AM GCDMSKW RGGLH PP GSA LGGQK
Sbjct: 566 MPKRMPSRFWQETLLYMTGTMPAW*MAMLVQAGCDMSKWRRGGLHHPPVVLGSAQLGGQK 387
Query: 423 LVAVT 409
LVA T
Sbjct: 386 LVAET 372
Score = 82.2 bits (173), Expect(2) = 2e-046
Identities = 32/59 (54%), Positives = 36/59 (61%)
Frame = +2 / +1
Query: 188 WSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCD 364
W+SA ATFY YGNLY GYG N AALSTALFN+G CGAC+ + CD
Sbjct: 154 WTSATATFYGGADGSGTMGGACGYGNLYGSGYGINNAALSTALFNDGAMCGACYIIYCD 330
Score = 38.2 bits (77), Expect(3) = 1e-024
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1 / -2
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVE 209
P AV+VAVPTR +HGA + AAVE
Sbjct: 246 PGAVQVAVPTRASHGARAVGAAVE 175
Score = 24.0 bits (46), Expect(3) = 1e-024
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = -2 / -3
Query: 342 APQLRPXXXXXXXXXXXXVPYPWL*RLPY 256
AP + P +PYP RLPY
Sbjct: 308 APHMAPSLKSAVLSAALLIPYPEPYRLPY 222
>gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D11f, mRNA sequence
Length = 521
Score = 134 bits (288), Expect(3) = 1e-045
Identities = 54/81 (66%), Positives = 56/81 (69%)
Frame = +2 / +1
Query: 131 HRAQPHPRPHGHAPLGGGAWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALST 310
HR P H HAP GGGAW+SAHATFY YGNLYS GYG+NTAALST
Sbjct: 169 HRHGPGIGHHAHAPFGGGAWASAHATFYGGGDASGTMGGACGYGNLYSTGYGSNTAALST 348
Query: 311 ALFNNGLSCGACFEVRCDAAG 373
ALFNNGLSCGACFEVRCD G
Sbjct: 349 ALFNNGLSCGACFEVRCDPGG 411
Score = 62.9 bits (131), Expect(3) = 1e-045
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = +2 / +1
Query: 374 GGGRSCLPGSVVVTATNFCPPNNALPSDDGGWC 472
G +CLPGS VVTATNFCPPN SD GGWC
Sbjct: 421 GAPHACLPGSTVVTATNFCPPNFGESSDAGGWC 519
Score = 62.0 bits (129), Expect(4) = 3e-029
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -1 / -3
Query: 280 PLAVEVAVPTRPAHGAGRIAAAVEGGVSRGPRATSERCVAV 158
P AVEV V RPAHGAG + AAVEGGVS P AT+ER V V
Sbjct: 318 PRAVEVPVAARPAHGAGSVTAAVEGGVSGRPGATAERRVGV 196
Score = 53.8 bits (111), Expect(4) = 3e-029
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = -2 / -1
Query: 474 LHQPPSSXGSALLGGQKLVAVTTTEPGRHERPPPPAASHRTSKQAPQ 334
LHQPP+S S LGGQKLVAVTT EPGR P + + + + Q
Sbjct: 521 LHQPPASDDSPKLGGQKLVAVTTVEPGRQAWGAPASVPPGSHRTSKQ 381
Score = 35.0 bits (70), Expect(4) = 3e-029
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1 / -3
Query: 139 GAVVAKPQPAREGEREQRGEDHDREDGLARRHWIG 35
G V A P P + REQRG + E RHW G
Sbjct: 153 GQVRATPLPTGQSGREQRGHEEGEEGCSGGRHWHG 49
Score = 33.6 bits (67), Expect(4) = 3e-029
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / -2
Query: 299 PPCWCRTPGCRG 264
PPCW RTP CRG
Sbjct: 337 PPCWSRTPCCRG 302
Score = 24.9 bits (48), Expect(3) = 1e-045
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2 / +1
Query: 41 PMAPRQXXXXXXXXXXXXPFALSRGLRLGHH 133
PMAP + P ALSRG G H
Sbjct: 55 PMAPARAALLALLVAALLPPALSRGQGRGPH 147
>gb|CA020777.1|CA020777 HZ37K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37K23
5-PRIME, mRNA sequence
Length = 582
Score = 153 bits (328), Expect(3) = 5e-044
Identities = 61/77 (79%), Positives = 67/77 (87%)
Frame = +2 / +1
Query: 644 VEGAGDVHAVAVKADRSPGWQALSRNWGQNWQSNTLLDGQALSFRVTTSDGRSVLSNNAA 823
V G GDVHAV+VK+ RS WQALSRNWGQNWQSN LLDGQ LSFRVT +G+SV+SNNA
Sbjct: 1 VGGPGDVHAVSVKSTRSAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAV 180
Query: 824 PRGWSFGQTFSGAQFN* 874
PRGWSFGQTFSGAQF+*
Sbjct: 181 PRGWSFGQTFSGAQFH* 231
Score = 111 bits (236), Expect(2) = 2e-026
Identities = 43/62 (69%), Positives = 47/62 (75%)
Frame = -2 / -2
Query: 873 QLNWAPLKVWPKDQPRGAALLESTERPSLVVTRKDRACPSRSVLLCQFWPQLRDRACHPG 694
Q NWAPLKVWP DQPRG ALLE+T+ P VTR +R CPS S LLCQF PQLR+ ACH
Sbjct: 230 QWNWAPLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACHAA 51
Query: 693 ER 688
ER
Sbjct: 50 ER 45
Score = 44.6 bits (91), Expect(3) = 5e-044
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +3
Query: 917 VLVVPSTPIGACREAPWFYEWS 982
V+VV + PIGAC EAPWFY WS
Sbjct: 288 VVVVVNLPIGACWEAPWFYGWS 353
Score = 28.6 bits (56), Expect(2) = 2e-026
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 981 DHS*NHGASRQAPIG 937
D *NHGAS+ APIG
Sbjct: 352 DQP*NHGASQHAPIG 308
Score = 23.5 bits (45), Expect(3) = 5e-044
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +1
Query: 1144 AALYHPPI 1167
AALYHPPI
Sbjct: 520 AALYHPPI 543
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 622,858,614
Number of Sequences: 312970
Number of extensions: 11569643
Number of successful extensions: 156039
Number of sequences better than 1.0e-020: 99
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 15755119913
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)