TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 165 3e-075
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 242 9e-071
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 242 1e-070
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 231 5e-065
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 149 7e-046
gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. v... 179 3e-044
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 115 2e-043
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 106 2e-040
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 105 2e-040
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 156 3e-038
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 156 3e-038
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 156 3e-038
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 156 3e-038
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 74 1e-037
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 116 2e-036
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 152 3e-036
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 98 6e-036
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 147 3e-035
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 147 1e-034
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 74 2e-034
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 145 4e-034
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 142 4e-033
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 139 5e-033
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 79 2e-032
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 79 2e-031
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 76 2e-031
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 133 2e-030
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 130 2e-029
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 72 6e-029
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 74 3e-028
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 74 3e-028
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 74 3e-028
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 74 2e-027
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 122 5e-027
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 122 5e-027
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 104 6e-027
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 121 9e-027
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 119 3e-026
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 78 8e-026
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 74 1e-024
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 111 1e-023
gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachi... 110 2e-023
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 65 2e-023
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 102 2e-023
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 105 4e-022
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 74 7e-022
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 73 1e-021
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 71 1e-021
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 76 2e-021
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 65 3e-021
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 66 6e-021
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 65 9e-021
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 165 bits (354), Expect(2) = 3e-075
Identities = 68/97 (70%), Positives = 79/97 (81%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRS KIKGT+ GWL MGRNW
Sbjct: 322 VMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSRKIKGTDSGWLYMGRNW 501
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDW 709
GQ+W I D+ GQP+SF L+ D T T+ VP+ +
Sbjct: 502 GQIWVIIFDLTGQPVSFGLTLGDGATKTNNYRVPQGY 612
Score = 148 bits (318), Expect(3) = 1e-056
Identities = 59/75 (78%), Positives = 63/75 (84%)
Frame = -3 / -1
Query: 645 DRGCPLMSQLMCHTWPQLRPIGSHPSSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLT 466
D GCP+ S++M H WPQLRP+ S P SVPLIF DLTSPAPPTLLIRTVKKK P TEN T
Sbjct: 548 DTGCPVRSKIMTHIWPQLRPM*SQPESVPLIFLDLTSPAPPTLLIRTVKKKLFPETENRT 369
Query: 465 PPSRRHLTRRYWMGM 421
PPSRRHLTRRYWMGM
Sbjct: 368 PPSRRHLTRRYWMGM 324
Score = 140 bits (301), Expect(2) = 3e-075
Identities = 54/58 (93%), Positives = 56/58 (96%)
Frame = +2 / +1
Query: 230 YAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKHCNP 403
+AADP DAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLK+C P
Sbjct: 1 FAADPGDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLP 174
Score = 97.7 bits (207), Expect(2) = 2e-028
Identities = 49/95 (51%), Positives = 62/95 (65%)
Frame = -2 / -3
Query: 703 LGHDVETGQRLAIA*AELKR*RLSPHVTVDVPHLAPVAAHREPS*LRSFDLHRPNITRAT 524
LG+ + R AI * E K RL + + P+LAPV AH EP+ + SFDL +IT AT
Sbjct: 606 LGYTIIICLRRAIT*GEPKGYRLPC*IEDNDPYLAPVTAHVEPARVCSFDLPGSDITSAT 427
Query: 523 NVAD*DCEEEVPTVDGEPHTTFAEALNTAVLDGHE 419
++AD*DCEEE D EPH FA+AL+ AVLDGH+
Sbjct: 426 DIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHD 322
Score = 93.6 bits (198), Expect(3) = 1e-056
Identities = 40/44 (90%), Positives = 40/44 (90%)
Frame = -3 / -1
Query: 402 GLQCLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIP*PCFPRSPN 271
G Q LRSSTHLTS*QPP AAPRSNSAVLSPTVAIP PCFPRSPN
Sbjct: 173 GRQYLRSSTHLTS*QPPQAAPRSNSAVLSPTVAIPYPCFPRSPN 42
Score = 51.5 bits (106), Expect(2) = 2e-028
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = -2 / -3
Query: 319 QPHRRHPVAVFPQIPEPARPTD 254
QPHRRHPV V PQIPEPAR TD
Sbjct: 90 QPHRRHPVPVLPQIPEPARATD 25
Score = 21.7 bits (41), Expect(3) = 1e-056
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 433 LDGHEEMVVG 404
LDG EE+VVG
Sbjct: 288 LDGQEEVVVG 259
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 242 bits (522), Expect(2) = 9e-071
Identities = 94/113 (83%), Positives = 106/113 (93%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRSVKIKGT+ GWL MGRNW
Sbjct: 204 VMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNW 383
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQFLL*RM 757
GQ+WHIN D+ GQP+SFEL+SSD T+T+FNVVPKDWEFGKTYTGKQFLL*++
Sbjct: 384 GQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQFLL*KI 542
Score = 186 bits (401), Expect(3) = 8e-051
Identities = 78/115 (67%), Positives = 81/115 (70%)
Frame = -3 / -1
Query: 765 RHSILYRRNCFPVYVLPNSQXXXXXXXXXXXXXXXXXXSNDRGCPLMSQLMCHTWPQLRP 586
R I RRNC PVYVLPNSQ S D GCP+ S+LMCH WPQLRP
Sbjct: 550 RSIIF*RRNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRP 371
Query: 585 IGSHPSSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWMGM 421
+ S P SVPLIFTDLTSPAPPTLLIRTVKKK P TEN TPPSRRHLTRRYWMGM
Sbjct: 370 MSSQPESVPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGM 206
Score = 144 bits (308), Expect = 1e-033
Identities = 67/111 (60%), Positives = 81/111 (72%)
Frame = -2 / -3
Query: 751 LQKKLLPRVCLAELPILGHDVETGQRLAIA*AELKR*RLSPHVTVDVPHLAPVAAHREPS 572
L+K+LL VC A+LPILGHDV+ R AI ELK RL + VDVP+LAPVAAH EP+
Sbjct: 536 LEKELLAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPA 357
Query: 571 *LRSFDLHRPNITRATNVAD*DCEEEVPTVDGEPHTTFAEALNTAVLDGHE 419
+ SFDLH +IT AT++AD*DCEEE D EPH FA+AL+ AVLDGH+
Sbjct: 356 RVCSFDLH*SDITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHD 204
Score = 111 bits (238), Expect(2) = 2e-030
Identities = 56/100 (56%), Positives = 62/100 (62%)
Frame = -1 / -2
Query: 755 FSTEETASPCMSCRTPNPWARR*NWSASCYRLS*AQTIEAVPSCHS*CATPGPSCGP*GA 576
FS E TA CM C+TPNPWARR*N S+SC+ *AQ I A S*CA GPSCGP A
Sbjct: 540 FSREGTACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRA 361
Query: 575 ILAPFL*SSQT*HHPRHQRC*LGLXXXXXXXXXRTSHHLR 456
+ FL*SS *HH RH+ C*LGL RT+ LR
Sbjct: 360 SQSLFL*SSLI*HHQRHRHC*LGL*RRSSSQRLRTARRLR 241
Score = 108 bits (230), Expect = 6e-023
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +3 / +1
Query: 423 CPSSTAVLSASAKXXXXXXXXXXXXXXXXXXATLVARVMLGL*RSKERS*DGSLWAATGA 602
CPSSTA SA AK A VA VM *RSKE++ GS WAATGA
Sbjct: 208 CPSSTAASSAFAKAACGSQSLGRASSSQS*SAMSVALVMSDQ*RSKEQTLAGSTWAATGA 387
Query: 603 RCGTSTVT*GDSLYRLSSAQAIARR*PVSTSCPRIGSSARHTRGSSFFCRE 755
R GTST * S Y LSS + +ARR* + TSCPRIGS A+HT SS F R+
Sbjct: 388 RYGTST*I*QGSRYPLSSPRVMARR*RILTSCPRIGSLAKHTPASSSFSRK 540
Score = 77.1 bits (162), Expect(3) = 2e-023
Identities = 38/69 (55%), Positives = 44/69 (63%)
Frame = +1 / +2
Query: 457 RRWCEVLRQRSALLLHSPNQQRWWRG*C*VCEDQRNGARMAPYGPQLGPGVAHQL*HEGT 636
RR VL LLLHSPNQQ WR *C + EDQRN +A +GPQLGP +AHQL
Sbjct: 242 RRRRAVLSLWEELLLHSPNQQCRWRW*CQISEDQRNRLWLARHGPQLGPDMAHQLRSNRA 421
Query: 637 ASIV*AQLK 663
A I+*A L+
Sbjct: 422 AGIL*AHLE 448
Score = 48.3 bits (99), Expect(2) = 9e-071
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / +3
Query: 350 CGGCYEVKCVEDLKHCNP 403
CGGCYEVKCVEDLK+C P
Sbjct: 3 CGGCYEVKCVEDLKYCLP 56
Score = 41.4 bits (84), Expect(2) = 2e-030
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3 / -1
Query: 471 LTPPSRRHLTRRYWMGMRKWWLGGLQ 394
+TP + + WMG RKWWLGGLQ
Sbjct: 208 MTPAFQSAIFSNAWMGRRKWWLGGLQ 131
Score = 40.0 bits (81), Expect(3) = 2e-023
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2 / +3
Query: 395 CNPPNHHFLMPIQYRRVKCLREGGV 469
CNPPNHHFL+PIQ L + GV
Sbjct: 132 CNPPNHHFLLPIQAFEKIALWKAGV 206
Score = 35.0 bits (70), Expect(3) = 8e-051
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3 / -1
Query: 402 GLQCLRSSTHLTS*QPP 352
G Q LRSSTHLTS*QPP
Sbjct: 55 GRQYLRSSTHLTS*QPP 5
Score = 29.5 bits (58), Expect(3) = 2e-023
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1 / +2
Query: 703 GLGVRQDIHGEAVSSVEN 756
GLGV Q+IH +AV S+EN
Sbjct: 488 GLGVWQNIHRQAVPSLEN 541
Score = 21.7 bits (41), Expect(3) = 8e-051
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 433 LDGHEEMVVG 404
LDG EE+VVG
Sbjct: 170 LDGQEEVVVG 141
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 242 bits (522), Expect(2) = 1e-070
Identities = 94/113 (83%), Positives = 106/113 (93%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRSVKIKGT+ GWL MGRNW
Sbjct: 204 VMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNW 383
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQFLL*RM 757
GQ+WHIN D+ GQP+SFEL+SSD T+T+FNVVPKDWEFGKTYTGKQFLL*++
Sbjct: 384 GQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQFLL*KI 542
Score = 186 bits (401), Expect(3) = 1e-050
Identities = 78/115 (67%), Positives = 81/115 (70%)
Frame = -3 / -2
Query: 765 RHSILYRRNCFPVYVLPNSQXXXXXXXXXXXXXXXXXXSNDRGCPLMSQLMCHTWPQLRP 586
R I RRNC PVYVLPNSQ S D GCP+ S+LMCH WPQLRP
Sbjct: 550 RSIIF*RRNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRP 371
Query: 585 IGSHPSSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWMGM 421
+ S P SVPLIFTDLTSPAPPTLLIRTVKKK P TEN TPPSRRHLTRRYWMGM
Sbjct: 370 MSSQPESVPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGM 206
Score = 144 bits (308), Expect = 1e-033
Identities = 67/111 (60%), Positives = 81/111 (72%)
Frame = -2 / -1
Query: 751 LQKKLLPRVCLAELPILGHDVETGQRLAIA*AELKR*RLSPHVTVDVPHLAPVAAHREPS 572
L+K+LL VC A+LPILGHDV+ R AI ELK RL + VDVP+LAPVAAH EP+
Sbjct: 536 LEKELLAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPA 357
Query: 571 *LRSFDLHRPNITRATNVAD*DCEEEVPTVDGEPHTTFAEALNTAVLDGHE 419
+ SFDLH +IT AT++AD*DCEEE D EPH FA+AL+ AVLDGH+
Sbjct: 356 RVCSFDLH*SDITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHD 204
Score = 111 bits (238), Expect(2) = 2e-030
Identities = 56/100 (56%), Positives = 62/100 (62%)
Frame = -1 / -3
Query: 755 FSTEETASPCMSCRTPNPWARR*NWSASCYRLS*AQTIEAVPSCHS*CATPGPSCGP*GA 576
FS E TA CM C+TPNPWARR*N S+SC+ *AQ I A S*CA GPSCGP A
Sbjct: 540 FSREGTACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRA 361
Query: 575 ILAPFL*SSQT*HHPRHQRC*LGLXXXXXXXXXRTSHHLR 456
+ FL*SS *HH RH+ C*LGL RT+ LR
Sbjct: 360 SQSLFL*SSLI*HHQRHRHC*LGL*RRSSSQRLRTARRLR 241
Score = 108 bits (230), Expect = 6e-023
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +3 / +1
Query: 423 CPSSTAVLSASAKXXXXXXXXXXXXXXXXXXATLVARVMLGL*RSKERS*DGSLWAATGA 602
CPSSTA SA AK A VA VM *RSKE++ GS WAATGA
Sbjct: 208 CPSSTAASSAFAKAACGSQSLGRASSSQS*SAMSVALVMSDQ*RSKEQTLAGSTWAATGA 387
Query: 603 RCGTSTVT*GDSLYRLSSAQAIARR*PVSTSCPRIGSSARHTRGSSFFCRE 755
R GTST * S Y LSS + +ARR* + TSCPRIGS A+HT SS F R+
Sbjct: 388 RYGTST*I*QGSRYPLSSPRVMARR*RILTSCPRIGSLAKHTPASSSFSRK 540
Score = 77.1 bits (162), Expect(3) = 2e-023
Identities = 38/69 (55%), Positives = 44/69 (63%)
Frame = +1 / +2
Query: 457 RRWCEVLRQRSALLLHSPNQQRWWRG*C*VCEDQRNGARMAPYGPQLGPGVAHQL*HEGT 636
RR VL LLLHSPNQQ WR *C + EDQRN +A +GPQLGP +AHQL
Sbjct: 242 RRRRAVLSLWEELLLHSPNQQCRWRW*CQISEDQRNRLWLARHGPQLGPDMAHQLRSNRA 421
Query: 637 ASIV*AQLK 663
A I+*A L+
Sbjct: 422 AGIL*AHLE 448
Score = 48.3 bits (99), Expect(2) = 1e-070
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2 / +3
Query: 350 CGGCYEVKCVEDLKHCNP 403
CGGCYEVKCVEDLK+C P
Sbjct: 3 CGGCYEVKCVEDLKYCLP 56
Score = 41.4 bits (84), Expect(2) = 2e-030
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3 / -2
Query: 471 LTPPSRRHLTRRYWMGMRKWWLGGLQ 394
+TP + + WMG RKWWLGGLQ
Sbjct: 208 MTPAFQSAIFSNAWMGRRKWWLGGLQ 131
Score = 40.0 bits (81), Expect(3) = 2e-023
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2 / +3
Query: 395 CNPPNHHFLMPIQYRRVKCLREGGV 469
CNPPNHHFL+PIQ L + GV
Sbjct: 132 CNPPNHHFLLPIQAFEKIALWKAGV 206
Score = 35.0 bits (70), Expect(3) = 1e-050
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3 / -2
Query: 402 GLQCLRSSTHLTS*QPP 352
G Q LRSSTHLTS*QPP
Sbjct: 55 GRQYLRSSTHLTS*QPP 5
Score = 29.5 bits (58), Expect(3) = 2e-023
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1 / +2
Query: 703 GLGVRQDIHGEAVSSVEN 756
GLGV Q+IH +AV S+EN
Sbjct: 488 GLGVWQNIHRQAVPSLEN 541
Score = 21.7 bits (41), Expect(3) = 1e-050
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -1
Query: 433 LDGHEEMVVG 404
LDG EE+VVG
Sbjct: 170 LDGQEEVVVG 141
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 231 bits (499), Expect(2) = 5e-065
Identities = 89/106 (83%), Positives = 99/106 (93%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRSVKIKGT+ GWL MGRNW
Sbjct: 204 VMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNW 383
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGK 736
GQ+WHIN D+ GQP+SFEL+SSD T+T+FNVVPKDWEFGKTYTGK
Sbjct: 384 GQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGK 521
Score = 174 bits (374), Expect(3) = 4e-046
Identities = 72/104 (69%), Positives = 75/104 (72%)
Frame = -3 / -3
Query: 732 PVYVLPNSQXXXXXXXXXXXXXXXXXXSNDRGCPLMSQLMCHTWPQLRPIGSHPSSVPLI 553
PVYVLPNSQ S D GCP+ S+LMCH WPQLRP+ S P SVPLI
Sbjct: 517 PVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPESVPLI 338
Query: 552 FTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWMGM 421
FTDLTSPAPPTLLIRTVKKK P TEN TPPSRRHLTRRYWMGM
Sbjct: 337 FTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGM 206
Score = 136 bits (292), Expect = 2e-031
Identities = 64/106 (60%), Positives = 76/106 (71%)
Frame = -2 / -2
Query: 736 LPRVCLAELPILGHDVETGQRLAIA*AELKR*RLSPHVTVDVPHLAPVAAHREPS*LRSF 557
L VC A+LPILGHDV+ R AI ELK RL + VDVP+LAPVAAH EP+ + SF
Sbjct: 521 LAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPARVCSF 342
Query: 556 DLHRPNITRATNVAD*DCEEEVPTVDGEPHTTFAEALNTAVLDGHE 419
DLH +IT AT++AD*DCEEE D EPH FA+AL+ AVLDGH+
Sbjct: 341 DLH*SDITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHD 204
Score = 104 bits (221), Expect(2) = 3e-028
Identities = 52/94 (55%), Positives = 58/94 (61%)
Frame = -1 / -1
Query: 737 ASPCMSCRTPNPWARR*NWSASCYRLS*AQTIEAVPSCHS*CATPGPSCGP*GAILAPFL 558
A CM C+TPNPWARR*N S+SC+ *AQ I A S*CA GPSCGP A + FL
Sbjct: 522 ACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRASQSLFL 343
Query: 557 *SSQT*HHPRHQRC*LGLXXXXXXXXXRTSHHLR 456
*SS *HH RH+ C*LGL RT+ LR
Sbjct: 342 *SSLI*HHQRHRHC*LGL*RRSSSQRLRTARRLR 241
Score = 102 bits (217), Expect = 4e-021
Identities = 55/105 (52%), Positives = 61/105 (58%)
Frame = +3 / +1
Query: 423 CPSSTAVLSASAKXXXXXXXXXXXXXXXXXXATLVARVMLGL*RSKERS*DGSLWAATGA 602
CPSSTA SA AK A VA VM *RSKE++ GS WAATGA
Sbjct: 208 CPSSTAASSAFAKAACGSQSLGRASSSQS*SAMSVALVMSDQ*RSKEQTLAGSTWAATGA 387
Query: 603 RCGTSTVT*GDSLYRLSSAQAIARR*PVSTSCPRIGSSARHTRGS 737
R GTST * S Y LSS + +ARR* + TSCPRIGS A+HT S
Sbjct: 388 RYGTST*I*QGSRYPLSSPRVMARR*RILTSCPRIGSLAKHTPAS 522
Score = 41.4 bits (84), Expect(2) = 3e-028
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3 / -3
Query: 471 LTPPSRRHLTRRYWMGMRKWWLGGLQ 394
+TP + + WMG RKWWLGGLQ
Sbjct: 208 MTPAFQSAIFSNAWMGRRKWWLGGLQ 131
Score = 39.6 bits (80), Expect(2) = 5e-065
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 350 CGGCYEVKCVEDLKHCNP 403
CGG Y VKCVEDLK+C P
Sbjct: 3 CGG*YAVKCVEDLKYCLP 56
Score = 31.3 bits (62), Expect(3) = 4e-046
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -3 / -3
Query: 402 GLQCLRSSTHLTS*QPP 352
G Q LRSSTHLT+ QPP
Sbjct: 55 GRQYLRSSTHLTAYQPP 5
Score = 21.7 bits (41), Expect(3) = 4e-046
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 433 LDGHEEMVVG 404
LDG EE+VVG
Sbjct: 170 LDGQEEVVVG 141
>gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O13f, mRNA sequence
Length = 669
Score = 149 bits (319), Expect(2) = 7e-046
Identities = 59/75 (78%), Positives = 64/75 (85%)
Frame = +2 / +3
Query: 179 SYGSSALSDWRPAKASYYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGG 358
SYGS ALS+WR AK+ Y+AADP DAIGGACGF DLGKHGYGMATVGLSTAL RGA+C G
Sbjct: 171 SYGSCALSEWRNAKSYYFAADPGDAIGGACGFWDLGKHGYGMATVGLSTALIYRGASCRG 350
Query: 359 CYEVKCVEDLKHCNP 403
CYEV CV+DLKH P
Sbjct: 351 CYEVNCVDDLKHWLP 395
Score = 75.3 bits (158), Expect(2) = 4e-023
Identities = 34/44 (77%), Positives = 34/44 (77%)
Frame = -3 / -3
Query: 402 GLQCLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIP*PCFPRSPN 271
G QC RSST LTS*QP APR SAVLSPTVAIP PCFPRS N
Sbjct: 394 GSQCFRSSTQLTS*QPRQEAPR*ISAVLSPTVAIPYPCFPRSQN 263
Score = 58.3 bits (121), Expect(2) = 7e-046
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNV 523
+MPIQYRRVKCLRE VR SV+G+ FTVLI V
Sbjct: 543 VMPIQYRRVKCLRESSVRLSVSGKKLLFTVLIXMV 647
Score = 55.6 bits (115), Expect(2) = 4e-023
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -3 / -3
Query: 522 TLLIRTVKKKCRPLTENLTPPSRRHLTRRYWMGM 421
T+ IRTVK+ P T+N T SRRHLTRRYWMGM
Sbjct: 646 TIXIRTVKRSFFPETDNRTLLSRRHLTRRYWMGM 545
>gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. vulgare cDNA clone HF16A18
5-PRIME, mRNA sequence
Length = 535
Score = 179 bits (385), Expect = 3e-044
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2 / -1
Query: 506 VLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTS 685
VLISNVGGAGDVRSVKIKGT+ GWL MGRNWGQ+WHIN D+ GQP+SFEL+SSD T+T+
Sbjct: 535 VLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTN 356
Query: 686 FNVVPKDWEFGKTYTGKQFLL*RM 757
FNVVPKDWEFGKTYTGKQFLL*++
Sbjct: 355 FNVVPKDWEFGKTYTGKQFLL*KI 284
Score = 126 bits (269), Expect = 3e-028
Identities = 53/86 (61%), Positives = 56/86 (65%)
Frame = -3 / +3
Query: 765 RHSILYRRNCFPVYVLPNSQXXXXXXXXXXXXXXXXXXSNDRGCPLMSQLMCHTWPQLRP 586
R I RRNC PVYVLPNSQ S D GCP+ S+LMCH WPQLRP
Sbjct: 276 RSIIF*RRNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRP 455
Query: 585 IGSHPSSVPLIFTDLTSPAPPTLLIR 508
+ S P SVPLIFTDLTSPAPPTLLIR
Sbjct: 456 MSSQPESVPLIFTDLTSPAPPTLLIR 533
Score = 107 bits (229), Expect = 9e-023
Identities = 51/83 (61%), Positives = 56/83 (67%)
Frame = -1 / +1
Query: 755 FSTEETASPCMSCRTPNPWARR*NWSASCYRLS*AQTIEAVPSCHS*CATPGPSCGP*GA 576
FS E TA CM C+TPNPWARR*N S+SC+ *AQ I A S*CA GPSCGP A
Sbjct: 286 FSREGTACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRA 465
Query: 575 ILAPFL*SSQT*HHPRHQRC*LG 507
+ FL*SS *HH RH+ C*LG
Sbjct: 466 SQSLFL*SSLI*HHQRHRHC*LG 534
Score = 101 bits (215), Expect = 7e-021
Identities = 49/82 (59%), Positives = 60/82 (73%)
Frame = -2 / +2
Query: 751 LQKKLLPRVCLAELPILGHDVETGQRLAIA*AELKR*RLSPHVTVDVPHLAPVAAHREPS 572
L+K+LL VC A+LPILGHDV+ R AI ELK RL + VDVP+LAPVAAH EP+
Sbjct: 290 LEKELLAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPA 469
Query: 571 *LRSFDLHRPNITRATNVAD*D 506
+ SFDLH +IT AT++AD*D
Sbjct: 470 RVCSFDLH*SDITSATDIAD*D 535
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 115 bits (245), Expect(3) = 2e-043
Identities = 43/83 (51%), Positives = 59/83 (71%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNW
Sbjct: 528 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVXGAGDARSVFIKGTRTGWQAMSRNW 707
Query: 599 GQVWHINCDMRGQPLSFELSSSD 667
G W N + Q LSF+++S D
Sbjct: 708 GMNWQSNTFLGRQCLSFKVTSRD 776
Score = 77.6 bits (163), Expect(3) = 2e-043
Identities = 30/59 (50%), Positives = 35/59 (59%)
Frame = +2 / +3
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKHCNP 403
Y D +GGACG+G+L GYG T LSTALF GAACG CYE++C C P
Sbjct: 207 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRP 383
Score = 22.1 bits (42), Expect(3) = 2e-043
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 456 CNPPRPHFDM 485
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 106 bits (227), Expect(3) = 2e-040
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNW
Sbjct: 310 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNW 489
Query: 599 GQVWHIN 619
G W N
Sbjct: 490 GMNWQSN 510
Score = 75.8 bits (159), Expect(3) = 2e-040
Identities = 29/53 (54%), Positives = 34/53 (64%)
Frame = +2 / +1
Query: 245 EDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKHCNP 403
E +GGACG+G+L GYG T LSTALF GAACG CYE++C C P
Sbjct: 7 EGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRP 165
Score = 22.1 bits (42), Expect(3) = 2e-040
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 238 CNPPRPHFDM 267
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 105 bits (225), Expect(3) = 2e-040
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNW
Sbjct: 333 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNW 512
Query: 599 GQVWHIN 619
GQ W N
Sbjct: 513 GQNWQSN 533
Score = 76.2 bits (160), Expect(3) = 2e-040
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +2 / +3
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 18 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 167
Score = 22.1 bits (42), Expect(3) = 2e-040
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 261 CNPPRAHFDM 290
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 156 bits (336), Expect(2) = 3e-038
Identities = 57/108 (52%), Positives = 78/108 (72%)
Frame = +2 / -3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNW
Sbjct: 577 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNW 398
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
GQ W N D+ GQ LSF ++ SD +T+TS N P W FG+T+ G QF
Sbjct: 397 GQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 254
Score = 22.1 bits (42), Expect(2) = 3e-038
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / -3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 649 CNPPRAHFDM 620
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 156 bits (336), Expect(2) = 3e-038
Identities = 57/108 (52%), Positives = 78/108 (72%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNW
Sbjct: 190 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNW 369
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
GQ W N D+ GQ LSF ++ SD +T+TS N P W FG+T+ G QF
Sbjct: 370 GQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 513
Score = 22.1 bits (42), Expect(2) = 3e-038
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 118 CNPPRAHFDM 147
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 156 bits (336), Expect(2) = 3e-038
Identities = 57/108 (52%), Positives = 78/108 (72%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNW
Sbjct: 128 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNW 307
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
GQ W N D+ GQ LSF ++ SD +T+TS N P W FG+T+ G QF
Sbjct: 308 GQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 451
Score = 22.1 bits (42), Expect(2) = 3e-038
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 56 CNPPRAHFDM 85
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 156 bits (336), Expect(2) = 3e-038
Identities = 57/108 (52%), Positives = 78/108 (72%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNW
Sbjct: 114 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNW 293
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
GQ W N D+ GQ LSF ++ SD +T+TS N P W FG+T+ G QF
Sbjct: 294 GQNWQSNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 437
Score = 22.1 bits (42), Expect(2) = 3e-038
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 42 CNPPRAHFDM 71
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 74.4 bits (156), Expect(4) = 1e-037
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +2 / +1
Query: 236 ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
AD D +GGACG+G+L GYG T LST LF GAACG CY++ C
Sbjct: 4 ADASDTMGGACGYGNLFSEGYGTRTAALSTVLFNDGAACGQCYKIAC 144
Score = 65.2 bits (136), Expect(4) = 1e-037
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIK 559
++P+ Y+RV C++ GGVRF +NG +F VL+SNV AG ++S+ +K
Sbjct: 328 IIPVMYQRVPCVKRGGVRFKMNGHDYFNLVLVSNVAAAGSIQSMDVK 468
Score = 51.0 bits (105), Expect(4) = 1e-037
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2 / +1
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTL 679
W+PM RNWG WH ++ G+ L+F L++SD TL
Sbjct: 487 WMPMARNWGANWHSLANLTGKMLAFRLTNSDGHTL 591
Score = 22.1 bits (42), Expect(4) = 1e-037
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 256 CNPPRPHFDM 285
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 116 bits (248), Expect(3) = 2e-036
Identities = 43/94 (45%), Positives = 64/94 (68%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M W
Sbjct: 271 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMFPQW 450
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVP 700
G W N D+ GQ LSF+++ + + +T N P
Sbjct: 451 GHNWQSNADLDGQSLSFQVTLTYRRDVTINNAAP 552
Score = 52.4 bits (108), Expect(3) = 2e-036
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +2 / +2
Query: 275 GDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
G+L G G T LSTALF GAACG CYE+KC
Sbjct: 5 GNLYSTGCGTNTAALSTALFNDGAACGSCYELKC 106
Score = 22.1 bits (42), Expect(3) = 2e-036
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 199 CNPPRAHFDM 228
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 152 bits (327), Expect = 3e-036
Identities = 56/108 (51%), Positives = 76/108 (70%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNW
Sbjct: 47 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNW 226
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
G W N + GQ LSF ++SSD +T+TS P W+FG+T+ G QF
Sbjct: 227 GMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 370
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 98.2 bits (208), Expect(2) = 6e-036
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M +W
Sbjct: 466 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMCPHW 645
Query: 599 GQVW 610
GQ W
Sbjct: 646 GQNW 657
Score = 76.2 bits (160), Expect(2) = 6e-036
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +2 / +1
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 151 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 300
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 147 bits (315), Expect(2) = 3e-035
Identities = 54/108 (50%), Positives = 73/108 (67%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+QYRRV C++ GG+RF++ G +F VLI+NV GAGD+ SV +K GWL M NW
Sbjct: 97 VVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNVAGAGDLMSVYVKAPSTGWLTMSHNW 276
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
G W + GQPLSF +++SD +T TS NV P W FG+T+ G QF
Sbjct: 277 GANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTFAGSQF 420
Score = 22.1 bits (42), Expect(2) = 3e-035
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2 / +1
Query: 395 CNPPNHHF 418
CNPP HF
Sbjct: 25 CNPPQSHF 48
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 147 bits (315), Expect = 1e-034
Identities = 55/103 (53%), Positives = 73/103 (70%)
Frame = +2 / +1
Query: 434 YRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWH 613
Y RV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNWGQ W
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQ 186
Query: 614 INCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
N D+ GQ LSF ++ SD +T+TS N P W FG+T+ G QF
Sbjct: 187 SNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 315
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 74.4 bits (156), Expect(4) = 2e-034
Identities = 25/49 (51%), Positives = 38/49 (77%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
++P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 264 IVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 410
Score = 71.2 bits (149), Expect(4) = 2e-034
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +2 / +3
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
W + RNWGQ W N + GQ LSF +++ + +++ S N VP+ W FG+T++G QF
Sbjct: 423 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 590
Score = 34.5 bits (69), Expect(4) = 2e-034
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2 / +3
Query: 314 GLSTALFERGAACGGCYEVKC 376
G ALF G +CG C+EV+C
Sbjct: 12 GPEPALFNNGLSCGACFEVRC 74
Score = 22.1 bits (42), Expect(4) = 2e-034
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 192 CNPPRAHFDM 221
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 145 bits (311), Expect = 4e-034
Identities = 53/103 (51%), Positives = 74/103 (71%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ Y+RV C ++GGVRF+VNG +F VL+SNVG G +RSV IKG+ GW+PM RNW
Sbjct: 89 IVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSRTGWMPMSRNW 268
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTY 727
G W N + GQ LSF+++S+D +T+T NV P W FG+T+
Sbjct: 269 GVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 142 bits (304), Expect = 4e-033
Identities = 54/108 (50%), Positives = 74/108 (68%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNW
Sbjct: 73 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNW 252
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
G W + GQ LSF ++SSD +T+TS P W+F +T+ G QF
Sbjct: 253 GMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAGWQFRQTF*GAQF 396
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 139 bits (298), Expect(2) = 5e-033
Identities = 51/103 (49%), Positives = 70/103 (67%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+QYRRV C++ GG+RF++ G +F VLI+NV GAGD+ SV +K GWL M NW
Sbjct: 145 VVPVQYRRVACVKTGGIRFTITGHSYFNLVLITNVAGAGDLMSVYVKAPSTGWLTMSHNW 324
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTY 727
G W + GQPLSF +++SD +T TS NV P W FG+T+
Sbjct: 325 GANWQNGAMLNGQPLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
Score = 22.1 bits (42), Expect(2) = 5e-033
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2 / +1
Query: 395 CNPPNHHF 418
CNPP HF
Sbjct: 73 CNPPQSHF 96
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 79.4 bits (167), Expect(3) = 2e-032
Identities = 28/51 (54%), Positives = 43/51 (84%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTEL 571
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG++L
Sbjct: 393 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKGSKL 545
Score = 76.2 bits (160), Expect(3) = 2e-032
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +2 / +1
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 76 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 225
Score = 22.1 bits (42), Expect(3) = 2e-032
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 320 CNPPRAHFDM 349
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 78.5 bits (165), Expect(5) = 2e-031
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPM 586
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG G P+
Sbjct: 253 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGPAPGGGPV 420
Score = 53.8 bits (111), Expect(5) = 2e-031
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 293 GYGMATVGLSTALFERGAACGGCYEVKC 376
GYG T LSTALF GAACG CYE+KC
Sbjct: 4 GYGTNTAALSTALFNDGAACGSCYELKC 87
Score = 28.6 bits (56), Expect(5) = 2e-031
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2 / +1
Query: 644 SFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQ 739
SF + ++ TS P W FG+T+ G+Q
Sbjct: 478 SFGSPLAKAEPSTSTTSAPSRWSFGQTFQGRQ 573
Score = 25.8 bits (50), Expect(5) = 2e-031
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2 / +2
Query: 584 MGRNWGQVWHINCDMR 631
+ RNWGQ W N +R
Sbjct: 416 LSRNWGQNWQSNGGLR 463
Score = 22.1 bits (42), Expect(5) = 2e-031
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +1
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 181 CNPPRAHFDM 210
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 76.2 bits (160), Expect(3) = 2e-031
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +2 / +3
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 174 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 323
Score = 75.8 bits (159), Expect(3) = 2e-031
Identities = 26/48 (54%), Positives = 40/48 (83%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKG 562
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV I+G
Sbjct: 489 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIRG 632
Score = 22.1 bits (42), Expect(3) = 2e-031
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 417 CNPPRAHFDM 446
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 133 bits (284), Expect = 2e-030
Identities = 50/96 (52%), Positives = 66/96 (68%)
Frame = +2 / -3
Query: 455 REGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRG 634
++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNWG W N + G
Sbjct: 699 KKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDG 520
Query: 635 QPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
Q LSF ++SSD +T+TS P W+FG+T+ G QF
Sbjct: 519 QCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 412
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 130 bits (278), Expect = 2e-029
Identities = 49/93 (52%), Positives = 64/93 (68%)
Frame = +2 / +2
Query: 440 RVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHIN 619
RV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNWG W N
Sbjct: 257 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSN 436
Query: 620 CDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFG 718
+ GQ LSF ++SSD +T+TS P W+FG
Sbjct: 437 TFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFG 535
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 72.1 bits (151), Expect(3) = 6e-029
Identities = 25/56 (44%), Positives = 40/56 (71%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPM 586
++P+ Y+RV C R GG+RF++NG +F V ++NVGG+G V + IKG++ W+ M
Sbjct: 459 IVPVNYKRVPCQRSGGMRFTINGNDYFELVTVANVGGSGVVSQMWIKGSKTDWMVM 626
Score = 70.7 bits (148), Expect(3) = 6e-029
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = +2 / +3
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y +D D +GGACG+G+L GYG+ + LSTALF GA+CG C+ + C
Sbjct: 132 YGGSDASDTMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCFTITC 281
Score = 23.1 bits (44), Expect(3) = 6e-029
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 387 CNPPRQHFDM 416
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 74.4 bits (156), Expect(3) = 3e-028
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = +2 / +2
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y + +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 152 YGGGEASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 301
Score = 67.0 bits (140), Expect(3) = 3e-028
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDV 541
++P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV
Sbjct: 467 IVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 22.1 bits (42), Expect(3) = 3e-028
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 395 CNPPRAHFDM 424
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 74.4 bits (156), Expect(2) = 3e-028
Identities = 25/49 (51%), Positives = 38/49 (77%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
++P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 32 IVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 178
Score = 71.2 bits (149), Expect(2) = 3e-028
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +2 / +2
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
W + RNWGQ W N + GQ LSF +++ + +++ S N VP+ W FG+T++G QF
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 74.4 bits (156), Expect(2) = 3e-028
Identities = 25/49 (51%), Positives = 38/49 (77%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
++P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 32 IVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 178
Score = 71.2 bits (149), Expect(2) = 3e-028
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +2 / +2
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
W + RNWGQ W N + GQ LSF +++ + +++ S N VP+ W FG+T++G QF
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 74.4 bits (156), Expect(4) = 2e-027
Identities = 25/49 (51%), Positives = 38/49 (77%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
++P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 260 IVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 406
Score = 41.8 bits (85), Expect(4) = 2e-027
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2 / +2
Query: 308 TVGLSTALFERGAACGGCYEVKC 376
T LSTALF G +CG C+EV+C
Sbjct: 2 TAALSTALFNNGLSCGACFEVRC 70
Score = 39.1 bits (79), Expect(4) = 2e-027
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2 / +2
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSK 673
W + RNWGQ W N + GQ LSF +++ + +
Sbjct: 419 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQ 517
Score = 22.1 bits (42), Expect(4) = 2e-027
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 188 CNPPRAHFDM 217
>gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06A13u 3', mRNA sequence
Length = 523
Score = 122 bits (260), Expect = 5e-027
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +2 / -2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ Y+RV C + G+RF ++GR +F V+++NVGG+G V + IKG+ WL M RNW
Sbjct: 510 IVPVMYKRVSCQKRDGIRFGISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAMSRNW 331
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYT 730
G W N + GQ LSF + D + T+ +V P +W FG TY+
Sbjct: 330 GANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYS 199
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 122 bits (260), Expect = 5e-027
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +2 / -3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ Y+RV C + G+RF ++GR +F V+++NVGG+G V + IKG+ WL M RNW
Sbjct: 407 IVPVMYKRVSCQKRDGIRFGISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAMSRNW 228
Query: 599 GQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYT 730
G W N + GQ LSF + D + T+ +V P +W FG TY+
Sbjct: 227 GANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYS 96
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 104 bits (221), Expect(3) = 6e-027
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ YRRV C+++GG+RF++NG +F VL +NV GAGDV+SV IKG+ GW M RNW
Sbjct: 228 IVPVSYRRVPCVKKGGMRFTINGHSYFNLVLXTNVAGAGDVQSVSIKGSSSGWQAMSRNW 407
Query: 599 GQVWHIN 619
GQ W N
Sbjct: 408 GQNWQSN 428
Score = 32.7 bits (65), Expect(3) = 6e-027
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 341 GAACGGCYEVKC 376
GAACG CYE+KC
Sbjct: 27 GAACGSCYELKC 62
Score = 22.1 bits (42), Expect(3) = 6e-027
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 156 CNPPRAHFDM 185
>gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d22 3', mRNA sequence
Length = 563
Score = 121 bits (258), Expect = 9e-027
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = +2 / -1
Query: 473 FSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFE 652
F+VNG +F VL+SNVGG G +RSV IKG+ GW+PM RNWG W N + GQ LSF+
Sbjct: 560 FTVNGHDYFELVLVSNVGGVGSIRSVSIKGSRTGWMPMSRNWGVNWQSNALLSGQSLSFQ 381
Query: 653 LSSSDSKTLTSFNVVPKDWEFGKTY 727
++S+D +T+T NV P W FG+T+
Sbjct: 380 VTSTDGQTITFPNVAPAGWGFGQTF 306
>gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D12
5-PRIME, mRNA sequence
Length = 475
Score = 119 bits (254), Expect = 3e-026
Identities = 46/88 (52%), Positives = 58/88 (65%)
Frame = +2 / +3
Query: 479 VNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELS 658
+NG +F VL++NV GAGD RSV IKGT GW M RNWG W N + GQ LSF ++
Sbjct: 12 INGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVT 191
Query: 659 SSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
SSD +T+TS P W+FG+T+ G QF
Sbjct: 192 SSDGRTVTSNAAAPAGWQFGQTFEGAQF 275
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 77.6 bits (163), Expect(2) = 8e-026
Identities = 30/59 (50%), Positives = 35/59 (59%)
Frame = +2 / +3
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKHCNP 403
Y D +GGACG+G+L GYG T LSTALF GAACG CYE++C C P
Sbjct: 207 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRP 383
Score = 62.9 bits (131), Expect(2) = 8e-026
Identities = 21/43 (48%), Positives = 33/43 (76%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRS 547
++P+ YRRV C+++GG+RF++NG + L++NV GAGD RS
Sbjct: 528 IVPLSYRRVPCVKKGGIRFTINGHSYLNLGLVTNVAGAGDARS 656
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 74.4 bits (156), Expect(4) = 1e-024
Identities = 25/49 (51%), Positives = 38/49 (77%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
++P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 243 IVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 389
Score = 38.2 bits (77), Expect(4) = 1e-024
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2 / +3
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSS 661
W + RNWGQ W N + GQ LSF +++
Sbjct: 402 WQALSRNWGQNWQSNALLDGQGLSFRVTA 488
Score = 33.6 bits (67), Expect(4) = 1e-024
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2 / +3
Query: 326 ALFERGAACGGCYEVKC 376
ALF G +CG C+EV+C
Sbjct: 3 ALFNNGLSCGACFEVRC 53
Score = 22.1 bits (42), Expect(4) = 1e-024
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +3
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 171 CNPPRAHFDM 200
>gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39d22 5', mRNA sequence
Length = 587
Score = 111 bits (236), Expect = 1e-023
Identities = 41/78 (52%), Positives = 55/78 (70%)
Frame = +2 / +3
Query: 494 FFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDSK 673
+F VL+SNVGG G +RSV IKG+ GW+PM RNWG W N + GQ LSF+++S+D +
Sbjct: 24 YFELVLVSNVGGVGSIRSVSIKGSRTGWMPMSRNWGVNWQSNALLSGQSLSFQVTSTDGQ 203
Query: 674 TLTSFNVVPKDWEFGKTY 727
T+T NV P W FG+T+
Sbjct: 204 TITFPNVAPAGWGFGQTF 257
>gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007F13f, mRNA sequence
Length = 619
Score = 110 bits (234), Expect = 2e-023
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = +2 / +3
Query: 179 SYGSSALSDWRPAKASYYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALF 334
SYGSSALS+WR AK+SY+AADP DAIGGACGF DLGKHGYGMATVGL ALF
Sbjct: 171 SYGSSALSEWRNAKSSYFAADPGDAIGGACGFXDLGKHGYGMATVGLDHALF 326
>gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C12
5-PRIME, mRNA sequence
Length = 561
Score = 64.8 bits (135), Expect(2) = 2e-023
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2 / +3
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYT 730
W+ M NWG WH + GQ LSF ++ +D +TL +VVP+ W FG+T++
Sbjct: 183 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTFS 338
Score = 64.8 bits (135), Expect(2) = 2e-023
Identities = 23/52 (44%), Positives = 40/52 (76%)
Frame = +2 / +3
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELG 574
++PI Y+RV C+++GGVRF+++G +F VL +NV AG VR++ ++G++ G
Sbjct: 24 IIPIIYQRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSG 179
>gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N24 5', mRNA sequence
Length = 370
Score = 102 bits (218), Expect(2) = 2e-023
Identities = 32/65 (49%), Positives = 51/65 (78%)
Frame = +2 / +1
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNW 598
++P+ Y++VKC R+GGVRF++NG ++F VL++N+ G+G ++S+ +KGT W+PM RNW
Sbjct: 175 IIPVFYQQVKCWRQGGVRFTINGFNYFELVLVANIAGSGSIKSMSVKGTNTAWIPMSRNW 354
Query: 599 GQVWH 613
G WH
Sbjct: 355 GANWH 369
Score = 26.7 bits (52), Expect(2) = 2e-023
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2 / +1
Query: 395 CNPPNHHFLM 424
CNPP HHF M
Sbjct: 103 CNPPRHHFDM 132
>gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. vulgare cDNA clone HF01B01
5-PRIME, mRNA sequence
Length = 685
Score = 105 bits (224), Expect = 4e-022
Identities = 41/76 (53%), Positives = 50/76 (65%)
Frame = +2 / +2
Query: 515 SNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNV 694
+NV GAGD RSV IKGT GW M RNWG W N + GQ LSF ++SSD +T+TS
Sbjct: 2 TNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAA 181
Query: 695 VPKDWEFGKTYTGKQF 742
P W+FG+T+ G QF
Sbjct: 182 APAGWQFGQTFEGAQF 229
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 74.4 bits (156), Expect(3) = 7e-022
Identities = 25/49 (51%), Positives = 38/49 (77%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
++P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 137 IVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 283
Score = 45.1 bits (92), Expect(3) = 7e-022
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2 / +2
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVV 697
W + RNWGQ W N + GQ LSF +++ + +++ S N V
Sbjct: 296 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAV 418
Score = 22.1 bits (42), Expect(3) = 7e-022
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 65 CNPPRAHFDM 94
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 72.5 bits (152), Expect(3) = 1e-021
Identities = 28/50 (56%), Positives = 32/50 (64%)
Frame = +2 / +2
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y D +GGACG+G+L GYG T LSTALF GAACG CY +KC
Sbjct: 38 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLKC 187
Score = 44.6 bits (91), Expect(3) = 1e-021
Identities = 13/27 (48%), Positives = 23/27 (85%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHFF 499
++P+ YRRV C+++GG+RF++NG +F
Sbjct: 353 IVPVSYRRVPCVKKGGMRFTMNGHAYF 433
Score = 23.5 bits (45), Expect(3) = 1e-021
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 281 CNPPRAHFXM 310
>gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 3', mRNA sequence
Length = 710
Score = 71.2 bits (149), Expect(2) = 1e-021
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +2 / -1
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYTGKQF 742
W + RNWGQ W N + GQ LSF +++ + +++ S N VP+ W FG+T++G QF
Sbjct: 596 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 429
Score = 51.9 bits (107), Expect(2) = 1e-021
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +2 / -1
Query: 464 GVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 565
G+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 710 GIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 609
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 76.2 bits (160), Expect(3) = 2e-021
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +2 / +2
Query: 227 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 376
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 200 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 349
Score = 41.8 bits (85), Expect(3) = 2e-021
Identities = 11/26 (42%), Positives = 22/26 (84%)
Frame = +2 / +2
Query: 419 LMPIQYRRVKCLREGGVRFSVNGRHF 496
++P+ YR+V C+++GG+RF++NG +
Sbjct: 515 IVPVSYRKVPCVKKGGMRFTINGHSY 592
Score = 22.1 bits (42), Expect(3) = 2e-021
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / +2
Query: 395 CNPPNHHFLM 424
CNPP HF M
Sbjct: 443 CNPPRAHFDM 472
>emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragment; clone MWG2088.uni
Length = 363
Score = 64.8 bits (135), Expect(2) = 3e-021
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2 / -1
Query: 575 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDSKTLTSFNVVPKDWEFGKTYT 730
W+ M NWG WH + GQ LSF ++ +D +TL +VVP+ W FG+T++
Sbjct: 162 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRTWRFGQTFS 7
Score = 57.4 bits (119), Expect(2) = 3e-021
Identities = 20/49 (40%), Positives = 36/49 (73%)
Frame = +2 / -1
Query: 428 IQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELG 574
+ + RV C+++GGVRF+++G +F VL +NV AG VR++ ++G++ G
Sbjct: 312 VAFGRVPCVKKGGVRFTISGHDYFQLVLPTNVAAAGSVRAMDVRGSKSG 166
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 451,696,848
Number of Sequences: 312970
Number of extensions: 7171412
Number of successful extensions: 59496
Number of sequences better than 1.0e-020: 64
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12673225439
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)