TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623807.2|BF623807 HVSMEa0007B05f Hordeum vulgare seedl... 249 1e-065
gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare s... 249 1e-065
gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, dro... 249 1e-065
gb|BM816057.1|BM816057 HC03F05_T3.ab1 HC Hordeum vulgare su... 233 7e-061
gb|AU090054.2|AU090054 AU090054 Hordeum vulgare subsp. vulg... 195 1e-056
gb|BQ466175.1|BQ466175 HT01M19T HT Hordeum vulgare subsp. v... 214 6e-055
gb|BM368765.2|BM368765 EBem08_SQ004_I17_R embryo, 40 DPA, n... 214 6e-055
gb|BU985299.1|BU985299 HF06L17r HF Hordeum vulgare subsp. v... 214 6e-055
gb|BU985771.1|BU985771 HF08J06r HF Hordeum vulgare subsp. v... 214 6e-055
gb|BU997629.1|BU997629 HI08I18r HI Hordeum vulgare subsp. v... 214 6e-055
gb|CA012015.1|CA012015 HT04D03r HT Hordeum vulgare subsp. v... 214 6e-055
gb|CA012540.1|CA012540 HT05L12r HT Hordeum vulgare subsp. v... 214 6e-055
gb|BM368471.2|BM368471 EBem08_SQ002_G11_R embryo, 40 DPA, n... 212 2e-054
gb|BI952411.1|BI952411 HVSMEm0006F13f Hordeum vulgare green... 211 4e-054
gb|CB858860.1|CB858860 HI08I18w HI Hordeum vulgare subsp. v... 211 4e-054
gb|BQ459902.1|BQ459902 HA07M09r HA Hordeum vulgare subsp. v... 199 1e-050
gb|CA011445.1|CA011445 HT05L12u HT Hordeum vulgare subsp. v... 197 6e-050
gb|BF064571.2|BF064571 HV_CEb0015O16f Hordeum vulgare seedl... 168 8e-050
gb|BU985293.1|BU985293 HF06L06r HF Hordeum vulgare subsp. v... 162 1e-049
gb|AU090079.1|AU090079 AU090079 Hordeum vulgare subsp. vulg... 195 2e-049
gb|AU090208.1|AU090208 AU090208 Hordeum vulgare subsp. vulg... 176 8e-048
gb|BU996496.1|BU996496 HM13M20r HM Hordeum vulgare subsp. v... 181 4e-045
gb|BU996712.1|BU996712 HM14H24r HM Hordeum vulgare subsp. v... 181 4e-045
gb|BM098504.2|BM098504 EBem08_SQ003_E01_R embryo, 40 DPA, n... 153 1e-036
gb|BM441942.2|BM441942 EBed07_SQ001_P20_R endosperm, 28 DPA... 87 6e-034
gb|BU986482.1|BU986482 HF11P23r HF Hordeum vulgare subsp. v... 139 2e-032
gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots... 138 4e-032
gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. v... 138 4e-032
gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. v... 138 4e-032
gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 ... 138 5e-032
gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA li... 138 5e-032
gb|BU985540.1|BU985540 HF07O06r HF Hordeum vulgare subsp. v... 135 2e-031
gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 ... 131 6e-030
gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. v... 131 6e-030
gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. v... 131 6e-030
gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. v... 131 6e-030
gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedl... 115 3e-027
gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. v... 121 6e-027
gb|BQ756390.1|BQ756390 EBem08_SQ002_A12_R embryo, 40 DPA, n... 115 4e-025
gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. v... 111 7e-024
>gb|BF623807.2|BF623807 HVSMEa0007B05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0007B05f, mRNA sequence
Length = 496
Score = 249 bits (539), Expect = 1e-065
Identities = 98/109 (89%), Positives = 106/109 (97%)
Frame = -2 / +1
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 106 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 285
Query: 441 LLESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGLT 295
+LESLIYWIPIWYELKLLF+AWL LPNFRGAAFIYD+FVREQLRKHGLT
Sbjct: 286 VLESLIYWIPIWYELKLLFLAWLALPNFRGAAFIYDRFVREQLRKHGLT 432
Score = 182 bits (393), Expect = 1e-045
Identities = 76/104 (73%), Positives = 86/104 (82%)
Frame = +1 / -2
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL E VVDEG +PEVG+ +PR EQQL+LVPD PV EGLE+HL ERDEGVEDPVG
Sbjct: 423 VLPELLPDEPVVDEGRSPEVGQRQPRQEQQLQLVPDRYPVDEGLEDHLDERDEGVEDPVG 244
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVVQLGRALHR H R+Q +Q+HH PC GVEV ED P+LAH
Sbjct: 243 QPLLVVQLGRALHRLHRRIQGIQEHHPRPCEGVEVGEDGPELAH 112
Score = 162 bits (348), Expect = 2e-039
Identities = 77/110 (70%), Positives = 82/110 (74%)
Frame = +2 / -3
Query: 296 VRPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RI 475
V PCF SCS TNLS*MKAAPLKLGS SHA NSS SSYQ+GIQ MRDSR+IS SVTKE*RI
Sbjct: 431 VSPCFLSCSLTNLS*MKAAPLKLGSASHARNSSFSSYQIGIQ*MRDSRTISTSVTKE*RI 252
Query: 476 Q*AXXXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPILSA 625
Q*A IA TDAY+GY SIT GPAR WR VR+V SL I S+
Sbjct: 251 Q*ASHCSSSSLDGLSIACTDAYKGYRSITPGPARVWRWVRMVQSLLIFSS 102
Score = 131 bits (281), Expect = 4e-030
Identities = 61/96 (63%), Positives = 64/96 (66%)
Frame = -1 / +3
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 102 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 281
Query: 445 DAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
D PRVPH+LD L A QLQG LHL
Sbjct: 282 DGPRVPHLLDTDLVRAEAAVPGVAGAAQLQGSGLHL 389
>gb|BM816042.1|BM816042 HC110A01_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110A01_T3.ab1 similar to (AF290892) AtHVA22e
[Arabidopsis thaliana],abscisic acid-induced protein
HVA22 (L19119) A22 [Hordeum vulgare],gene_id:MFB16.12
pir|T05517 similar to unknown protein [Arabidopsis
thaliana], mRNA sequence
Length = 821
Score = 249 bits (539), Expect = 1e-065
Identities = 98/109 (89%), Positives = 106/109 (97%)
Frame = -2 / +3
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 126 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 305
Query: 441 LLESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGLT 295
+LESLIYWIPIWYELKLLF+AWL LPNFRGAAFIYD+FVREQLRKHGLT
Sbjct: 306 VLESLIYWIPIWYELKLLFLAWLALPNFRGAAFIYDRFVREQLRKHGLT 452
Score = 182 bits (393), Expect(2) = 5e-049
Identities = 76/104 (73%), Positives = 86/104 (82%)
Frame = +1 / -1
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL E VVDEG +PEVG+ +PR EQQL+LVPD PV EGLE+HL ERDEGVEDPVG
Sbjct: 443 VLPELLPDEPVVDEGRSPEVGQRQPRQEQQLQLVPDRYPVDEGLEDHLDERDEGVEDPVG 264
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVVQLGRALHR H R+Q +Q+HH PC GVEV ED P+LAH
Sbjct: 263 QPLLVVQLGRALHRLHRRIQGIQEHHPRPCEGVEVGEDGPELAH 132
Score = 165 bits (354), Expect(2) = 2e-041
Identities = 78/110 (70%), Positives = 83/110 (75%)
Frame = +2 / -2
Query: 296 VRPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RI 475
VRPCF SCS TNLS*MKAAPLKLGS SHA NSS SSYQ+GIQ MRDSR+IS SVTKE*RI
Sbjct: 451 VRPCFLSCSLTNLS*MKAAPLKLGSASHARNSSFSSYQIGIQ*MRDSRTISTSVTKE*RI 272
Query: 476 Q*AXXXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPILSA 625
Q*A IA TDAY+GY SIT GPAR WR VR+V SL I S+
Sbjct: 271 Q*ASHCSSSSLDGLSIACTDAYKGYRSITPGPARVWRWVRMVQSLLIFSS 122
Score = 131 bits (281), Expect = 4e-030
Identities = 61/96 (63%), Positives = 64/96 (66%)
Frame = -1 / +2
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 122 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 301
Query: 445 DAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
D PRVPH+LD L A QLQG LHL
Sbjct: 302 DGPRVPHLLDTDLVRAEAAVPGVAGAAQLQGSGLHL 409
Score = 31.8 bits (63), Expect(2) = 5e-049
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3 / -3
Query: 162 RNGITATHFSKLHDPSWA*RRRGTCS 239
R+ + A S L D SW RRRG CS
Sbjct: 630 RDALVAAPISHLSDLSWVRRRRGICS 553
Score = 24.0 bits (46), Expect(2) = 2e-041
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -2
Query: 194 AS*SFLGVTKARNL 235
+ *SFLG TK RNL
Sbjct: 598 SQ*SFLGATKERNL 557
>gb|BQ768743.1|BQ768743 EBro08_SQ012_F15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F15 5', mRNA sequence
Length = 622
Score = 249 bits (539), Expect = 1e-065
Identities = 98/109 (89%), Positives = 106/109 (97%)
Frame = -2 / +3
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 108 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 287
Query: 441 LLESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGLT 295
+LESLIYWIPIWYELKLLF+AWL LPNFRGAAFIYD+FVREQLRKHGLT
Sbjct: 288 VLESLIYWIPIWYELKLLFLAWLALPNFRGAAFIYDRFVREQLRKHGLT 434
Score = 182 bits (393), Expect(2) = 5e-049
Identities = 76/104 (73%), Positives = 86/104 (82%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL E VVDEG +PEVG+ +PR EQQL+LVPD PV EGLE+HL ERDEGVEDPVG
Sbjct: 425 VLPELLPDEPVVDEGRSPEVGQRQPRQEQQLQLVPDRYPVDEGLEDHLDERDEGVEDPVG 246
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVVQLGRALHR H R+Q +Q+HH PC GVEV ED P+LAH
Sbjct: 245 QPLLVVQLGRALHRLHRRIQGIQEHHPRPCEGVEVGEDGPELAH 114
Score = 165 bits (354), Expect(2) = 2e-041
Identities = 78/110 (70%), Positives = 83/110 (75%)
Frame = +2 / -1
Query: 296 VRPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RI 475
VRPCF SCS TNLS*MKAAPLKLGS SHA NSS SSYQ+GIQ MRDSR+IS SVTKE*RI
Sbjct: 433 VRPCFLSCSLTNLS*MKAAPLKLGSASHARNSSFSSYQIGIQ*MRDSRTISTSVTKE*RI 254
Query: 476 Q*AXXXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPILSA 625
Q*A IA TDAY+GY SIT GPAR WR VR+V SL I S+
Sbjct: 253 Q*ASHCSSSSLDGLSIACTDAYKGYRSITPGPARVWRWVRMVQSLLIFSS 104
Score = 131 bits (281), Expect = 4e-030
Identities = 61/96 (63%), Positives = 64/96 (66%)
Frame = -1 / +2
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 104 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 283
Query: 445 DAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
D PRVPH+LD L A QLQG LHL
Sbjct: 284 DGPRVPHLLDTDLVRAEAAVPGVAGAAQLQGSGLHL 391
Score = 31.8 bits (63), Expect(2) = 5e-049
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3 / -2
Query: 162 RNGITATHFSKLHDPSWA*RRRGTCS 239
R+ + A S L D SW RRRG CS
Sbjct: 612 RDALVAAPISHLSDLSWVRRRRGICS 535
Score = 24.0 bits (46), Expect(2) = 2e-041
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 194 AS*SFLGVTKARNL 235
+ *SFLG TK RNL
Sbjct: 580 SQ*SFLGATKERNL 539
>gb|BM816057.1|BM816057 HC03F05_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC03F05_T3.ab1 similar to (AF290892) AtHVA22e
[Arabidopsis thaliana],abscisic acid-induced protein
HVA22 (L19119) A22 [Hordeum vulgare], mRNA sequence
Length = 872
Score = 233 bits (504), Expect = 7e-061
Identities = 91/109 (83%), Positives = 102/109 (93%)
Frame = -2 / +3
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 66 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 245
Query: 441 LLESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGLT 295
+LESLIYWIPIWYELKLLF+AWL LPN+RGA FIYD+F+ QL KHGL+
Sbjct: 246 VLESLIYWIPIWYELKLLFLAWLALPNYRGAGFIYDRFLLVQLLKHGLS 392
Score = 163 bits (351), Expect = 9e-040
Identities = 67/94 (71%), Positives = 77/94 (81%)
Frame = +1 / -1
Query: 334 VVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGR 513
VVDE +P VG+ +PR EQQL+LVPD PV EGLE+HL ERDEGVEDPVG+PLLVVQLGR
Sbjct: 353 VVDEARSPIVGQRQPRQEQQLQLVPDRYPVDEGLEDHLDERDEGVEDPVGQPLLVVQLGR 174
Query: 514 ALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
ALHR H R+Q +Q+HH PC GVEV ED P+LAH
Sbjct: 173 ALHRLHRRIQGIQEHHPRPCEGVEVGEDGPELAH 72
Score = 155 bits (333), Expect = 3e-037
Identities = 73/109 (66%), Positives = 80/109 (73%)
Frame = +2 / -2
Query: 299 RPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ 478
RPCF SC++ NLS*MK APL LGS SHA NSS SSYQ+GIQ MRDSR+IS SVTKE*RIQ
Sbjct: 388 RPCFNSCTKRNLS*MKPAPL*LGSASHARNSSFSSYQIGIQ*MRDSRTISTSVTKE*RIQ 209
Query: 479 *AXXXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPILSA 625
*A IA TDAY+GY SIT GPAR WR VR+V SL I S+
Sbjct: 208 *ASHCSSSSLDGLSIACTDAYKGYRSITPGPARVWRWVRMVQSLLIFSS 62
Score = 127 bits (272), Expect = 7e-029
Identities = 60/96 (62%), Positives = 63/96 (65%)
Frame = -1 / +2
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 62 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 241
Query: 445 DAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
D PRVPH+LD L A QL G LHL
Sbjct: 242 DGPRVPHLLDTDLVRAEAAVPGVAGAAQL*GSGLHL 349
>gb|AU090054.2|AU090054 AU090054 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_021, mRNA sequence
Length = 485
Score = 195 bits (421), Expect(2) = 1e-056
Identities = 76/86 (88%), Positives = 83/86 (96%)
Frame = -2 / +1
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 121 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 300
Query: 441 LLESLIYWIPIWYELKLLFIAWLVLP 364
+LESLIYWIPIWYELKLLF+AWL LP
Sbjct: 301 VLESLIYWIPIWYELKLLFLAWLALP 378
Score = 149 bits (319), Expect(2) = 8e-040
Identities = 60/83 (72%), Positives = 69/83 (83%)
Frame = +1 / -3
Query: 367 EHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQR 546
+ +PR EQQL+LVPD PV EGLE+HL ERDEGVEDPVG+PLLVVQLGRALHR H R+Q
Sbjct: 375 QRQPRQEQQLQLVPDRYPVDEGLEDHLDERDEGVEDPVGQPLLVVQLGRALHRLHRRIQG 196
Query: 547 VQQHHRWPC*GVEVSEDRPQLAH 615
+Q+HH PC GVEV ED P+LAH
Sbjct: 195 IQEHHPRPCEGVEVGEDGPELAH 127
Score = 121 bits (258), Expect = 6e-027
Identities = 53/73 (72%), Positives = 56/73 (76%)
Frame = -1 / +3
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 117 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 296
Query: 445 DAPRVPHILDPHL 407
D PRVPH+LD L
Sbjct: 297 DGPRVPHLLDTDL 335
Score = 119 bits (254), Expect(2) = 8e-028
Identities = 57/89 (64%), Positives = 64/89 (71%)
Frame = +2 / -1
Query: 359 KLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AXXXXXXXXXXXXIARTDA 538
++GS SHA NSS SSYQ+GIQ MRDSR+IS SVTKE*RIQ*A IA TDA
Sbjct: 383 EVGSASHARNSSFSSYQIGIQ*MRDSRTISTSVTKE*RIQ*ASHCSSSSLDGLSIACTDA 204
Query: 539 YRGYSSITVGPAREWR*VRIVHSLPILSA 625
Y+GY SIT GPAR WR VR+V SL I S+
Sbjct: 203 YKGYRSITPGPARVWRWVRMVQSLLIFSS 117
Score = 44.6 bits (91), Expect(2) = 1e-056
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = -2 / +2
Query: 357 RGAAFIYDKFVREQLRKHGLTAAGS 283
+G+ FIYD+FVREQLRKHG GS
Sbjct: 383 QGSGFIYDRFVREQLRKHGYQHPGS 457
Score = 35.0 bits (70), Expect(2) = 8e-040
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +2 / -3
Query: 302 PCFRSCSRTNLS*MKAAP 355
PCF SCS TNLS*MK P
Sbjct: 438 PCFLSCSLTNLS*MKPLP 385
Score = 24.4 bits (47), Expect(2) = 8e-028
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 304 VLPELLAHELVVDE 345
VLPELL E VVDE
Sbjct: 436 VLPELLPDEPVVDE 395
>gb|BQ466175.1|BQ466175 HT01M19T HT Hordeum vulgare subsp. vulgare cDNA clone HT01M19
5-PRIME, mRNA sequence
Length = 646
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +2
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 122 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 301
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 302 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 436
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -1
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 436 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 257
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 256 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 125
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -2
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 432 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 253
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 252 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 121
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +1
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 112 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 291
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 292 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 402
>gb|BM368765.2|BM368765 EBem08_SQ004_I17_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_I17 5', mRNA sequence
Length = 499
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +2
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 152 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 331
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 332 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 466
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -1
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 466 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 287
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 286 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 155
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -2
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 462 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 283
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 282 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 151
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +1
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 142 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 321
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 322 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 432
>gb|BU985299.1|BU985299 HF06L17r HF Hordeum vulgare subsp. vulgare cDNA clone HF06L17
5-PRIME, mRNA sequence
Length = 552
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +3
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 174 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 353
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 354 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 488
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -2
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 488 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 309
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 308 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 177
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -3
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 484 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 305
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 304 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 173
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +2
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 164 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 343
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 344 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 454
>gb|BU985771.1|BU985771 HF08J06r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J06
5-PRIME, mRNA sequence
Length = 535
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +3
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 174 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 353
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 354 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 488
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 488 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 309
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 308 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 177
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -1
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 484 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 305
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 304 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 173
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +2
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 164 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 343
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 344 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 454
>gb|BU997629.1|BU997629 HI08I18r HI Hordeum vulgare subsp. vulgare cDNA clone HI08I18
5-PRIME, mRNA sequence
Length = 621
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +3
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 162 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 341
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 342 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 476
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -2
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 476 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 297
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 296 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 165
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -3
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 472 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 293
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 292 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 161
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +2
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 152 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 331
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 332 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 442
>gb|CA012015.1|CA012015 HT04D03r HT Hordeum vulgare subsp. vulgare cDNA clone HT04D03
5-PRIME, mRNA sequence
Length = 563
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +1
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 124 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 303
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 304 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 438
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 438 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 259
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 258 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 127
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -1
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 434 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 255
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 254 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 123
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +3
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 114 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 293
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 294 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 404
>gb|CA012540.1|CA012540 HT05L12r HT Hordeum vulgare subsp. vulgare cDNA clone HT05L12
5-PRIME, mRNA sequence
Length = 537
Score = 214 bits (461), Expect = 6e-055
Identities = 79/105 (75%), Positives = 95/105 (90%)
Frame = -2 / +1
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 163 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 342
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 343 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 477
Score = 146 bits (313), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -1
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 477 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 298
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 297 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 166
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -2
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 473 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 294
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 293 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 162
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +3
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 153 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 332
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 333 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 443
>gb|BM368471.2|BM368471 EBem08_SQ002_G11_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_G11 5', mRNA sequence
Length = 508
Score = 212 bits (458), Expect = 2e-054
Identities = 78/105 (74%), Positives = 95/105 (90%)
Frame = -2 / +3
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 114 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 293
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQL+K+
Sbjct: 294 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLKKY 428
Score = 141 bits (303), Expect = 4e-033
Identities = 65/104 (62%), Positives = 72/104 (69%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VL ELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 428 VLLELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 249
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 248 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*FAH 117
Score = 120 bits (256), Expect = 1e-026
Identities = 58/104 (55%), Positives = 63/104 (60%)
Frame = +2 / -1
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 424 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 245
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H LPIL
Sbjct: 244 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDLPIL 113
Score = 101 bits (215), Expect = 5e-021
Identities = 49/97 (50%), Positives = 56/97 (57%)
Frame = -1 / +2
Query: 628 VRRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAH 449
VR ++GQ + PH PPL RA AAVPSV V GEPVQ GRRAVA +LDPLLL H
Sbjct: 104 VREENGQIMGAPHPPPLRRRAKHHAAVPSVCVGVRHGEPVQGGRRAVAGILDPLLLHHPP 283
Query: 448 GDAPRVPHILDPHLXXXXXXXXXXXXAPQLQGRRLHL 338
GD R +LD + AP +QGR LHL
Sbjct: 284 GDGGRACPLLDTGVVPSEAAVRGLAGAPAVQGRLLHL 394
>gb|BI952411.1|BI952411 HVSMEm0006F13f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0006F13f, mRNA sequence
Length = 780
Score = 211 bits (455), Expect = 4e-054
Identities = 78/105 (74%), Positives = 95/105 (90%)
Frame = -2 / +2
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMG+ W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 155 RMGEGWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 334
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 335 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 469
Score = 147 bits (316), Expect = 6e-035
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 469 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 290
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP L H
Sbjct: 289 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERPSLPH 158
Score = 116 bits (249), Expect = 1e-025
Identities = 57/104 (54%), Positives = 62/104 (59%)
Frame = +2 / -1
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 465 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 286
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H PIL
Sbjct: 285 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHPSPIL 154
>gb|CB858860.1|CB858860 HI08I18w HI Hordeum vulgare subsp. vulgare cDNA clone HI08I18
3-PRIME, mRNA sequence
Length = 589
Score = 211 bits (455), Expect = 4e-054
Identities = 78/105 (74%), Positives = 94/105 (89%)
Frame = -2 / -1
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMG W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 556 RMGXSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 377
Query: 438 LESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
E ++YWIP+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 376 AEPVLYWIPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 242
Score = 145 bits (312), Expect = 2e-034
Identities = 66/104 (63%), Positives = 73/104 (70%)
Frame = +1 / +2
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 242 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 421
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQLAH 615
+PLLVV LGRALH H R+QRVQQ WP GVEV E+RP AH
Sbjct: 422 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGEERP*XAH 553
Score = 117 bits (251), Expect = 6e-026
Identities = 57/104 (54%), Positives = 62/104 (59%)
Frame = +2 / +3
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 246 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 425
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR*VRIVHSLPIL 619
+A TDAYRGYSS+ +GPA EWR VR H PIL
Sbjct: 426 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWRWVRSAHDXPIL 557
>gb|BQ459902.1|BQ459902 HA07M09r HA Hordeum vulgare subsp. vulgare cDNA clone HA07M09
5-PRIME, mRNA sequence
Length = 647
Score = 199 bits (430), Expect = 1e-050
Identities = 71/102 (69%), Positives = 90/102 (88%)
Frame = -2 / +1
Query: 603 WTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLI 424
W ++ HLH++AGP++ L+YPLYAS+ AMES SKLDD QWLAYWI+YSF+ L EM E ++
Sbjct: 67 WALICHLHAIAGPSLTLVYPLYASICAMESTSKLDDGQWLAYWIIYSFIALFEMAAEQVL 246
Query: 423 YWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKHGL 298
YWIP+WYE+KLLF+AWLVLP FRGA+FIY+KFVREQ+RKHG+
Sbjct: 247 YWIPLWYEVKLLFVAWLVLPQFRGASFIYEKFVREQIRKHGV 372
Score = 138 bits (297), Expect = 3e-032
Identities = 62/100 (62%), Positives = 73/100 (73%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLP+LL EL+VDEG APE+ +H+PR E QL LVP PV + L H E DEGV+ PVG
Sbjct: 366 VLPDLLPDELLVDEGRAPELRQHQPRHE*QLHLVPQRYPVEDLLGCHFEEGDEGVDYPVG 187
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRP 603
+PL VVQLGRALHR GRVQRV Q PC GVEV+++RP
Sbjct: 186 QPLAVVQLGRALHRADGRVQRVYQGQARPCNGVEVADERP 67
Score = 105 bits (224), Expect = 3e-022
Identities = 50/98 (51%), Positives = 58/98 (59%)
Frame = +2 / -1
Query: 293 AVRPCFRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*R 472
++ PCF CS TN S*MK APL GSTSHA NSS +SY GIQ S +IS KE*
Sbjct: 377 SITPCFLICSLTNFS*MKDAPLNCGSTSHATNSSFTSYHSGIQ*RTCSAAISKRAMKE*I 198
Query: 473 IQ*AXXXXXXXXXXXXIARTDAYRGYSSITVGPAREWR 586
IQ*A IA+ DAY GY+ + +GPA WR
Sbjct: 197 IQ*ASHWPSSSLDVLSIAQMDAYSGYTRVRLGPAMAWR 84
>gb|CA011445.1|CA011445 HT05L12u HT Hordeum vulgare subsp. vulgare cDNA clone HT05L12
3-PRIME, mRNA sequence
Length = 550
Score = 197 bits (425), Expect = 6e-050
Identities = 73/96 (76%), Positives = 88/96 (91%)
Frame = -2 / -3
Query: 591 THLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIP 412
THLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+ E ++YWIP
Sbjct: 527 THLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIP 348
Query: 411 IWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
+WY +KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 347 VWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKY 240
Score = 136 bits (292), Expect = 1e-031
Identities = 62/102 (60%), Positives = 69/102 (67%)
Frame = +1 / +3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 240 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 419
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSEDRPQL 609
+PLLVV LGRALH H R+QRVQQ WP GVEV P +
Sbjct: 420 QPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGVEVGXGAPMI 545
Score = 106 bits (226), Expect = 2e-022
Identities = 51/93 (54%), Positives = 56/93 (60%)
Frame = +2 / +1
Query: 308 FRSCSRTNLS*MKAAPLKLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AX 487
F SCS T LS*MK APL GS S A NSS + Y GIQ S +IS V KE*RIQ A
Sbjct: 244 FLSCSLTTLS*MKEAPLNCGSASQATNSSFTGYHTGIQ*RTGSATISRRVMKE*RIQYAS 423
Query: 488 XXXXXXXXXXXIARTDAYRGYSSITVGPAREWR 586
+A TDAYRGYSS+ +GPA EWR
Sbjct: 424 HCSSSTLDGLSMAHTDAYRGYSSVMLGPATEWR 522
>gb|BF064571.2|BF064571 HV_CEb0015O16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015O16f, mRNA sequence
Length = 853
Score = 168 bits (361), Expect(2) = 8e-050
Identities = 67/78 (85%), Positives = 73/78 (93%)
Frame = -2 / +2
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M LWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDD QWLAYWILYSF TL+EM
Sbjct: 131 EKMSMLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDD*QWLAYWILYSFGTLVEM 310
Query: 441 LLESLIYWIPIWYELKLL 388
+LESLIYWIPIWYELKLL
Sbjct: 311 VLESLIYWIPIWYELKLL 364
Score = 128 bits (274), Expect(2) = 1e-035
Identities = 53/76 (69%), Positives = 62/76 (81%)
Frame = +1 / -1
Query: 388 QQLELVPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQRVQQHHRW 567
QQL+LVPD PV EGLE+HL ER EGVEDPVG+PLLVVQLGRALHR H R+Q +Q+HH
Sbjct: 364 QQLKLVPDRYPVDEGLEDHLDERAEGVEDPVGQPLLVVQLGRALHRLHRRIQGIQEHHPR 185
Query: 568 PC*GVEVSEDRPQLAH 615
PC GV+V +D P+ AH
Sbjct: 184 PCEGVKVGKDGPEHAH 137
Score = 109 bits (232), Expect = 2e-023
Identities = 49/73 (67%), Positives = 53/73 (72%)
Frame = -1 / +1
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D A+D P+ P P RA GDA V V V AGDGEPVQAGR AVA LLDPLLLRHA
Sbjct: 127 RREDEHALDHPYPPSHPRRAWGDAPVSLVCVGAGDGEPVQAGRLAVAGLLDPLLLRHARR 306
Query: 445 DAPRVPHILDPHL 407
D PRVPH+LD L
Sbjct: 307 DGPRVPHLLDTDL 345
Score = 93.6 bits (198), Expect(2) = 2e-023
Identities = 49/79 (62%), Positives = 55/79 (69%)
Frame = +2 / -2
Query: 389 SSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AXXXXXXXXXXXXIARTDAYRGYSSITVG 568
SSLSSYQ+GIQ MRDSR+IS SV KE*RIQ*A IA TDAY+GY SIT G
Sbjct: 363 SSLSSYQIGIQ*MRDSRTISTSVPKE*RIQ*ASHC*SSSLDGLSIACTDAYKGYRSITPG 184
Query: 569 PAREWR*VRIVHSLPILSA 625
PAR R VR+V S+ I S+
Sbjct: 183 PARV*RWVRMVQSMLIFSS 127
Score = 49.2 bits (101), Expect(2) = 8e-050
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -2 / +3
Query: 399 LKLLFIAWLVLPNFRGAAFIYDKFVRE 319
L F+A L LPNFRGAAFIYD+FVRE
Sbjct: 354 LSCWFLARLALPNFRGAAFIYDRFVRE 434
Score = 41.4 bits (84), Expect(2) = 1e-035
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +2 / -1
Query: 320 SRTNLS*MKAAPLKLGSTSHAMNSSL 397
S TNLS*MKAAPLKLGS S A N L
Sbjct: 433 SLTNLS*MKAAPLKLGSASLARNQQL 356
Score = 35.4 bits (71), Expect(2) = 2e-023
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1 / -3
Query: 319 LAHELVVDEGGAPEVGEHEPRDE 387
L E VVDEG +PEVG+ +PR E
Sbjct: 434 LPDEPVVDEGRSPEVGQRQPRQE 366
>gb|BU985293.1|BU985293 HF06L06r HF Hordeum vulgare subsp. vulgare cDNA clone HF06L06
5-PRIME, mRNA sequence
Length = 603
Score = 162 bits (349), Expect(2) = 1e-049
Identities = 60/79 (75%), Positives = 72/79 (91%)
Frame = -2 / +3
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPN 361
YASV AMESPSK+DDEQWLAYWILYSF+TL+EM+ E ++YWIP+WY +KLLF+AWL LP
Sbjct: 144 YASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKLLFVAWLALPQ 323
Query: 360 FRGAAFIYDKFVREQLRKH 304
F+GA+FIYDK VREQLRK+
Sbjct: 324 FKGASFIYDKVVREQLRKY 380
Score = 110 bits (234), Expect(2) = 9e-032
Identities = 50/79 (63%), Positives = 56/79 (70%)
Frame = +1 / -2
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 380 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 201
Query: 484 EPLLVVQLGRALHRPHGRV 540
+PLLVV LGRALH H R+
Sbjct: 200 QPLLVVHLGRALHGAHRRI 144
Score = 54.2 bits (112), Expect(2) = 1e-049
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -2 / +2
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPL 541
RMGK W +LTHLHS+AGP++ LLYPL
Sbjct: 65 RMGKSWALLTHLHSVAGPSITLLYPL 142
Score = 46.9 bits (96), Expect(2) = 9e-032
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2 / -1
Query: 542 RGYSSITVGPAREWR*VRIVHSLPIL 619
RGYSS+ +GPA EWR VR H LPIL
Sbjct: 141 RGYSSVMLGPATEWRWVRSAHDLPIL 64
>gb|AU090079.1|AU090079 AU090079 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_049, mRNA sequence
Length = 440
Score = 195 bits (421), Expect = 2e-049
Identities = 76/86 (88%), Positives = 83/86 (96%)
Frame = -2 / +2
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 122 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 301
Query: 441 LLESLIYWIPIWYELKLLFIAWLVLP 364
+LESLIYWIPIWYELKLLF+AWL LP
Sbjct: 302 VLESLIYWIPIWYELKLLFLAWLALP 379
Score = 149 bits (319), Expect = 2e-035
Identities = 60/83 (72%), Positives = 69/83 (83%)
Frame = +1 / -2
Query: 367 EHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQR 546
+ +PR EQQL+LVPD PV EGLE+HL ERDEGVEDPVG+PLLVVQLGRALHR H R+Q
Sbjct: 376 QRQPRQEQQLQLVPDRYPVDEGLEDHLDERDEGVEDPVGQPLLVVQLGRALHRLHRRIQG 197
Query: 547 VQQHHRWPC*GVEVSEDRPQLAH 615
+Q+HH PC GVEV ED P+LAH
Sbjct: 196 IQEHHPRPCEGVEVGEDGPELAH 128
Score = 121 bits (258), Expect = 6e-027
Identities = 53/73 (72%), Positives = 56/73 (76%)
Frame = -1 / +1
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 118 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 297
Query: 445 DAPRVPHILDPHL 407
D PRVPH+LD L
Sbjct: 298 DGPRVPHLLDTDL 336
Score = 119 bits (254), Expect = 2e-026
Identities = 57/89 (64%), Positives = 64/89 (71%)
Frame = +2 / -3
Query: 359 KLGSTSHAMNSSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AXXXXXXXXXXXXIARTDA 538
++GS SHA NSS SSYQ+GIQ MRDSR+IS SVTKE*RIQ*A IA TDA
Sbjct: 384 EVGSASHARNSSFSSYQIGIQ*MRDSRTISTSVTKE*RIQ*ASHCSSSSLDGLSIACTDA 205
Query: 539 YRGYSSITVGPAREWR*VRIVHSLPILSA 625
Y+GY SIT GPAR WR VR+V SL I S+
Sbjct: 204 YKGYRSITPGPARVWRWVRMVQSLLIFSS 118
>gb|AU090208.1|AU090208 AU090208 Hordeum vulgare subsp. vulgare Upper three leaves at
heading stage Hordeum vulgare subsp. vulgare cDNA clone
haruna_lib1_218, mRNA sequence
Length = 499
Score = 176 bits (379), Expect(3) = 8e-048
Identities = 69/77 (89%), Positives = 75/77 (97%)
Frame = -2 / +2
Query: 621 DRMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEM 442
++M KLWTILTHLH+LAGP VMLLYPLYASV+AMESPSKLDDEQWLAYWILYSFVTL+EM
Sbjct: 122 EKMSKLWTILTHLHTLAGPGVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFVTLVEM 301
Query: 441 LLESLIYWIPIWYELKL 391
+LESLIYWIPIWYELKL
Sbjct: 302 VLESLIYWIPIWYELKL 352
Score = 135 bits (289), Expect(2) = 1e-032
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +1 / -1
Query: 391 QLELVPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQRVQQHHRWP 570
+L+LVPD PV EGLE+HL ERDEGVEDPVG+PLLVVQLGRALHR H R+Q +Q+HH P
Sbjct: 352 KLQLVPDRYPVDEGLEDHLDERDEGVEDPVGQPLLVVQLGRALHRLHRRIQGIQEHHPRP 173
Query: 571 C*GVEVSEDRPQLAH 615
C GVEV ED P+LAH
Sbjct: 172 CEGVEVGEDGPELAH 128
Score = 121 bits (258), Expect = 6e-027
Identities = 53/73 (72%), Positives = 56/73 (76%)
Frame = -1 / +1
Query: 625 RRQDGQAVDDPHSPPLPSRANGDAAVPSVRVRAGDGEPVQAGRRAVARLLDPLLLRHAHG 446
RR+D QA+D PH PP P RA GDA V V V AGDGEPVQAGRRAVA LLDPLLLRHA
Sbjct: 118 RREDEQALDHPHPPPHPRRAWGDAPVSLVCVGAGDGEPVQAGRRAVAGLLDPLLLRHARR 297
Query: 445 DAPRVPHILDPHL 407
D PRVPH+LD L
Sbjct: 298 DGPRVPHLLDTDL 336
Score = 102 bits (218), Expect = 2e-021
Identities = 50/79 (63%), Positives = 56/79 (70%)
Frame = +2 / -2
Query: 389 SSLSSYQMGIQYMRDSRSISMSVTKE*RIQ*AXXXXXXXXXXXXIARTDAYRGYSSITVG 568
+S SSYQ+GIQ MRDSR+IS SVTKE*RIQ*A IA TDAY+GY SIT G
Sbjct: 354 ASFSSYQIGIQ*MRDSRTISTSVTKE*RIQ*ASHCSSSSLDGLSIACTDAYKGYRSITPG 175
Query: 569 PAREWR*VRIVHSLPILSA 625
PAR WR VR+V SL I S+
Sbjct: 174 PARVWRWVRMVQSLLIFSS 118
Score = 27.6 bits (54), Expect(3) = 8e-048
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 393 LLFIAWLVLPNFRG 352
LL +AWL L NFRG
Sbjct: 351 LLVLAWLALANFRG 392
Score = 24.9 bits (48), Expect(3) = 8e-048
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 339 YDKFVREQLRK 307
YD+FVRE LRK
Sbjct: 402 YDRFVREXLRK 434
Score = 24.4 bits (47), Expect(2) = 1e-032
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / -1
Query: 347 AAPLKLGSTSHAMNSSL 397
+ PLKL S SHA S L
Sbjct: 397 SRPLKLASASHARTSKL 347
>gb|BU996496.1|BU996496 HM13M20r HM Hordeum vulgare subsp. vulgare cDNA clone HM13M20
5-PRIME, mRNA sequence
Length = 645
Score = 181 bits (390), Expect = 4e-045
Identities = 68/92 (73%), Positives = 82/92 (89%)
Frame = -2 / +2
Query: 579 SLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYE 400
SL P++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+ E ++YWIP+WY
Sbjct: 68 SLRRPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYP 247
Query: 399 LKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
+KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 248 VKLLFVAWLALPQFKGASFIYDKVVREQLRKY 343
Score = 131 bits (281), Expect = 4e-030
Identities = 59/97 (60%), Positives = 67/97 (69%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 343 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 164
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSE 594
+PLLVV LGRALH H R+QRVQQ WP G E ++
Sbjct: 163 QPLLVVHLGRALHGAHRRIQRVQQRDAWPAQGNEAAD 53
>gb|BU996712.1|BU996712 HM14H24r HM Hordeum vulgare subsp. vulgare cDNA clone HM14H24
5-PRIME, mRNA sequence
Length = 587
Score = 181 bits (390), Expect = 4e-045
Identities = 68/92 (73%), Positives = 82/92 (89%)
Frame = -2 / +2
Query: 579 SLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYE 400
SL P++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+ E ++YWIP+WY
Sbjct: 74 SLRRPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYP 253
Query: 399 LKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
+KLLF+AWL LP F+GA+FIYDK VREQLRK+
Sbjct: 254 VKLLFVAWLALPQFKGASFIYDKVVREQLRKY 349
Score = 131 bits (281), Expect = 4e-030
Identities = 59/97 (60%), Positives = 67/97 (69%)
Frame = +1 / -2
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDPVYEGLEEHLHERDEGVEDPVG 483
VLPELL +LVVDEGGA E+ E +P EQQL VP PV + L HL E DEGVEDPV
Sbjct: 349 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYPVEDRLGHHLQEGDEGVEDPVC 170
Query: 484 EPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GVEVSE 594
+PLLVV LGRALH H R+QRVQQ WP G E ++
Sbjct: 169 QPLLVVHLGRALHGAHRRIQRVQQRDAWPAQGNEAAD 59
>gb|BM098504.2|BM098504 EBem08_SQ003_E01_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_E01 5', mRNA sequence
Length = 369
Score = 153 bits (328), Expect = 1e-036
Identities = 55/72 (76%), Positives = 66/72 (91%)
Frame = -2 / +2
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 152 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 331
Query: 438 LESLIYWIPIWY 403
E ++YWIP+WY
Sbjct: 332 AEPVLYWIPVWY 367
Score = 102 bits (217), Expect = 3e-021
Identities = 45/71 (63%), Positives = 49/71 (69%)
Frame = +1 / -3
Query: 403 VPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQRVQQHHRWPC*GV 582
VP PV + L HL E DEGVEDPV +PLLVV LGRALH H R+QRVQQ WP GV
Sbjct: 367 VPHRYPVEDRLGHHLQEGDEGVEDPVCQPLLVVHLGRALHGAHRRIQRVQQRDAWPGDGV 188
Query: 583 EVSEDRPQLAH 615
EV E+RP AH
Sbjct: 187 EVGEERP*FAH 155
>gb|BM441942.2|BM441942 EBed07_SQ001_P20_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P20 5', mRNA sequence
Length = 403
Score = 87.2 bits (184), Expect(2) = 6e-034
Identities = 32/41 (78%), Positives = 38/41 (92%)
Frame = -2 / +3
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
YASV AMESPSK+DDEQWLAYWILYSF+TL+EM+ E ++YW
Sbjct: 3 YASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYW 125
Score = 77.1 bits (162), Expect(2) = 6e-034
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = -2 / +1
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
IP+WY +KLLF+AWL LP F+GA+FIYDK VREQL+K+
Sbjct: 145 IPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLKKY 258
>gb|BU986482.1|BU986482 HF11P23r HF Hordeum vulgare subsp. vulgare cDNA clone HF11P23
5-PRIME, mRNA sequence
Length = 579
Score = 139 bits (298), Expect = 2e-032
Identities = 53/79 (67%), Positives = 67/79 (84%)
Frame = -2 / +1
Query: 618 RMGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
RMGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+
Sbjct: 55 RMGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMV 234
Query: 438 LESLIYWIPIWYELKLLFI 382
E ++YW I ++ + F+
Sbjct: 235 AEPVLYW*LILQQVLI*FV 291
Score = 101 bits (216), Expect(2) = 6e-031
Identities = 45/72 (62%), Positives = 50/72 (69%)
Frame = +1 / -1
Query: 400 LVPDGDPVYEGLEEHLHERDEGVEDPVGEPLLVVQLGRALHRPHGRVQRVQQHHRWPC*G 579
L+ D PV + L HL E DEGVEDPV +PLLVV LGRALH H R+QRVQQ WP G
Sbjct: 273 LLEDKLPVEDRLGHHLQEGDEGVEDPVCQPLLVVHLGRALHGAHRRIQRVQQRDAWPGDG 94
Query: 580 VEVSEDRPQLAH 615
VEV E+RP AH
Sbjct: 93 VEVGEERP*FAH 58
Score = 52.4 bits (108), Expect(2) = 6e-031
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1 / -3
Query: 304 VLPELLAHELVVDEGGAPEVGEHEPRDEQQLELVPDGDP 420
VLPELL +LVVDEGGA E+ E +P EQQL VP P
Sbjct: 454 VLPELLPDDLVVDEGGALELRERQPGHEQQLHWVPHRYP 338
>gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H03T 5', mRNA sequence
Length = 700
Score = 138 bits (296), Expect = 4e-032
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L ++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++
Sbjct: 132 LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAV 311
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
I W+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 312 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 425
>gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. vulgare cDNA clone HF14L15
5-PRIME, mRNA sequence
Length = 639
Score = 138 bits (296), Expect = 4e-032
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L ++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++
Sbjct: 128 LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAV 307
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
I W+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 308 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 421
>gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13A06
5-PRIME, mRNA sequence
Length = 558
Score = 138 bits (296), Expect = 4e-032
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L ++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++
Sbjct: 107 LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAV 286
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
I W+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 287 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 400
>gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087D14f, mRNA sequence
Length = 486
Score = 138 bits (295), Expect = 5e-032
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L ++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++
Sbjct: 182 LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAV 361
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
I W+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 362 IEWLPXWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 475
>gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 5', mRNA sequence
Length = 637
Score = 138 bits (295), Expect = 5e-032
Identities = 52/95 (54%), Positives = 69/95 (72%)
Frame = -2 / +3
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++I W
Sbjct: 30 LVSNLDVLAGPIVSLAYPLYASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAVIEW 209
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 210 LPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 314
>gb|BU985540.1|BU985540 HF07O06r HF Hordeum vulgare subsp. vulgare cDNA clone HF07O06
5-PRIME, mRNA sequence
Length = 202
Score = 135 bits (290), Expect = 2e-031
Identities = 49/67 (73%), Positives = 60/67 (89%)
Frame = -2 / +1
Query: 564 TVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLF 385
++ LLYPLYASV AMESPSK+DDEQWLAYWILYSF+TL+EM+ ++YWIP+WY +KLLF
Sbjct: 1 SITLLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAVPVLYWIPVWYPVKLLF 180
Query: 384 IAWLVLP 364
+AWL LP
Sbjct: 181 VAWLALP 201
>gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102N13f, mRNA sequence
Length = 729
Score = 131 bits (280), Expect = 6e-030
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = -2 / +3
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 84 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 263
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLV P F GAA++Y+ F R
Sbjct: 264 KLFFNCWLVFPCFNGAAYVYEHFAR 338
>gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
5-PRIME, mRNA sequence
Length = 574
Score = 131 bits (280), Expect = 6e-030
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 40 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 219
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLV P F GAA++Y+ F R
Sbjct: 220 KLFFNCWLVFPCFNGAAYVYEHFAR 294
>gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. vulgare cDNA clone HF14H19
5-PRIME, mRNA sequence
Length = 602
Score = 131 bits (280), Expect = 6e-030
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 64 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 243
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLV P F GAA++Y+ F R
Sbjct: 244 KLFFNCWLVFPCFNGAAYVYEHFAR 318
>gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
5-PRIME, mRNA sequence
Length = 546
Score = 131 bits (280), Expect = 6e-030
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 64 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 243
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLV P F GAA++Y+ F R
Sbjct: 244 KLFFNCWLVFPCFNGAAYVYEHFAR 318
>gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A15f, mRNA sequence
Length = 551
Score = 115 bits (245), Expect(2) = 3e-027
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = -2 / +1
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPN 361
YASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++I W+P W KL F WLVLP
Sbjct: 289 YASVRAIETKSPIDDQQWLTYWVLYSFITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPY 468
Query: 360 FRGAAFIYDKFVREQL 313
F GAA +Y+ FVR +
Sbjct: 469 FNGAAHVYEHFVRPMI 516
Score = 26.7 bits (52), Expect(2) = 3e-027
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASV 529
L ++++L LAGP V L YPL +V
Sbjct: 117 LKVLVSNLDVLAGPIVSLAYPL*VNV 194
>gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
5-PRIME, mRNA sequence
Length = 530
Score = 121 bits (258), Expect = 6e-027
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = -2 / +2
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 296 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 475
Query: 396 KLLFIAWLVLPNFRGAAF 343
KL F WLV P F GAA+
Sbjct: 476 KLFFNCWLVFPCFNGAAY 529
>gb|BQ756390.1|BQ756390 EBem08_SQ002_A12_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ002_A12 5', mRNA sequence
Length = 339
Score = 115 bits (245), Expect = 4e-025
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVT 454
MGK W +LTHLHS+AGP++ LLYPLYASV AMESPSK DDEQWLAYWILYSF+T
Sbjct: 178 MGKSWALLTHLHSVAGPSITLLYPLYASVCAMESPSKGDDEQWLAYWILYSFIT 339
>gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M15
5-PRIME, mRNA sequence
Length = 333
Score = 111 bits (236), Expect = 7e-024
Identities = 41/71 (57%), Positives = 52/71 (73%)
Frame = -2 / +2
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 119 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTXAPILEWLPFWPYG 298
Query: 396 KLLFIAWLVLP 364
KL F WLV P
Sbjct: 299 KLXFNCWLVFP 331
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 362,727,145
Number of Sequences: 312970
Number of extensions: 6238351
Number of successful extensions: 69059
Number of sequences better than 1.0e-020: 56
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 8925992668
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)