TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM816657.1|BM816657 HB01A11_T3.ab1 HB Hordeum vulgare su... 219 2e-093
gb|BQ763592.1|BQ763592 EBro02_SQ008_J22_R root, 3 week, hyd... 219 1e-067
gb|CA008602.1|CA008602 HU11H19r HU Hordeum vulgare subsp. v... 223 2e-057
gb|BF255201.2|BF255201 HVSMEf0006D16f Hordeum vulgare seedl... 181 8e-045
gb|CA009093.1|CA009093 HU13C12r HU Hordeum vulgare subsp. v... 181 8e-045
gb|BF617607.2|BF617607 HVSMEc0018E10f Hordeum vulgare seedl... 178 8e-044
gb|BF618562.2|BF618562 HVSMEc0006C15f Hordeum vulgare seedl... 177 1e-043
gb|BF626985.3|BF626985 HVSMEb0001O07f Hordeum vulgare seedl... 101 2e-035
gb|CA008022.1|CA008022 HU09K22r HU Hordeum vulgare subsp. v... 111 3e-025
gb|BU997932.1|BU997932 HI09H10r HI Hordeum vulgare subsp. v... 65 2e-023
gb|BG310172.2|BG310172 HVSMEc0016F13f Hordeum vulgare seedl... 56 4e-021
>gb|BM816657.1|BM816657 HB01A11_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01A11_T3.ab1 similar to Pseudomonapepsin,, mRNA
sequence
Length = 822
Score = 219 bits (472), Expect(2) = 2e-093
Identities = 90/105 (85%), Positives = 98/105 (93%)
Frame = -2 / +1
Query: 541 RPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQP 362
RPGDLYV ++VREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTL+GDVVLK+KPGTQP
Sbjct: 292 RPGDLYVAIKVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLAGDVVLKVKPGTQP 471
Query: 361 GQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
GQ+VVLRGKGIKTRNS +GDQYVHFNV IP NLT +QR L+EEF
Sbjct: 472 GQKVVLRGKGIKTRNSYSYGDQYVHFNVKIPVNLTQKQRMLLEEF 606
Score = 154 bits (331), Expect(2) = 2e-068
Identities = 68/82 (82%), Positives = 73/82 (89%)
Frame = +3 / -2
Query: 246 RCLDVKFSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TV 425
RC VKF+G+LTLKWTY SP+ EFLVLIPFPLRTT *PG*VPGL FRTTSP RVGT*TV
Sbjct: 587 RCFCVKFTGILTLKWTYWSPYEYEFLVLIPFPLRTTF*PG*VPGLTFRTTSPARVGT*TV 408
Query: 426 PPKIA*VTFRTAST*ISPFSLR 491
PP+IA*VTF+TAST ISPFSLR
Sbjct: 407 PPRIA*VTFKTASTWISPFSLR 342
Score = 145 bits (311), Expect(2) = 2e-093
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = -2 / +1
Query: 817 CGGAGVPPGTTPETCLXXXXXXXXXXXXXXFRMQSTCTKCGGSGKTVKEFCKACRGNKVV 638
C GAGVP GT PETCL FRMQSTC++CGGSGKTVK+FCK+CRG KVV
Sbjct: 13 CNGAGVPAGTKPETCLACRGSGYMILQTGPFRMQSTCSQCGGSGKTVKDFCKSCRGKKVV 192
Query: 637 PGRKSVRLDILPGSDNEDTIKVVRSGGEDPDG 542
PG K+V +DI PG+D+ED +KV+RSG DPDG
Sbjct: 193 PGIKTVSIDISPGTDDEDVMKVLRSGQADPDG 288
Score = 141 bits (302), Expect(2) = 7e-054
Identities = 66/94 (70%), Positives = 74/94 (78%)
Frame = +2 / -1
Query: 260 QIFGDVDIEMDILISVVR*VSCLDPFSSQNYPLTRLSTGLDL*NNVSTESWDLNCPSQNC 439
QI D DIEMD+L+S+ *V CLD FSSQN LTRLST L+L*NN+S ESW LN SQNC
Sbjct: 573 QIHRDFDIEMDVLVSI*I*VPCLDSFSSQNNLLTRLSTRLNL*NNISRESWYLNSTSQNC 394
Query: 440 LSHIQDSINMNITFLSSENRILTNLEGHIKITWT 541
LSHI DSI M+ITFLSSE ILTNL G+IK+T T
Sbjct: 393 LSHI*DSIYMDITFLSSEYWILTNLNGYIKVTRT 292
Score = 133 bits (285), Expect(2) = 3e-051
Identities = 60/93 (64%), Positives = 66/93 (70%)
Frame = -1 / +3
Query: 527 LCDPRGS*GSCFPKRER*YSC*CCPECDSGNFGRDSSSPNSQWRRCSKDQARYSTWSEGS 348
LC GS*GS PKRER*Y C CC +CDSGN GR SS NS+ R CSK A YSTWSEG
Sbjct: 306 LCSH*GS*GSSIPKRER*YPCRCCLKCDSGNSGRYCSSTNSRGRCCSKG*AWYSTWSEGC 485
Query: 347 SERKRDQDKKLTVPRRSICPFQCQHPRKFDV*T 249
SERKR+QDK+L R I PFQCQ+P +FD T
Sbjct: 486 SERKRNQDKELIFIWRPIRPFQCQNPCEFDTET 584
Score = 126 bits (269), Expect(2) = 2e-068
Identities = 53/81 (65%), Positives = 58/81 (71%)
Frame = +3 / -2
Query: 576 FMVSSLSEPGSMSRRTDFLPGTTLFPLHALQNSFTVFPEPPHFVQVDCILNGPEKKNINP 755
FM SS S PG +S T F+PGTT FPLH LQ SFTV P+PPH VDCIL GP + I P
Sbjct: 254 FMTSSSSVPGDISIETVFIPGTTFFPLHDLQKSFTVLPDPPHCEHVDCILKGPVCRIIYP 75
Query: 756 EPLQDRHVSGVVPGGTPAPPQ 818
EPLQ R VSG+VP GTPAP Q
Sbjct: 74 EPLQARQVSGLVPAGTPAPLQ 12
Score = 122 bits (260), Expect(2) = 3e-044
Identities = 66/90 (73%), Positives = 67/90 (74%)
Frame = -3 / +2
Query: 540 VQVIFM*PSRFVRILFSEERKVIFMLMLS*M*LRQFWEGQFKSQLSVETLF*RSSPVLNL 361
V V FM*P RFVRI +SEERKVI M MLS*M*LRQFWE FK QLS E LF*R S VLNL
Sbjct: 293 VLVTFM*PLRFVRIQYSEERKVISM*MLS*M*LRQFWEVLFKYQLSREMLF*RLSLVLNL 472
Query: 360 VRG*F*EEKGSRQETHRTTEINMSISMSTS 271
VR F*EEK SRQ TH E N SISMS S
Sbjct: 473 VRRLF*EEKESRQGTHIHMETNTSISMSKS 562
Score = 103 bits (220), Expect(2) = 2e-039
Identities = 51/90 (56%), Positives = 55/90 (61%)
Frame = +1 / -3
Query: 259 SNFRGC*H*NGHIDLRGTVXXXXXXXXXXXXPSDQVEYRA*SLEQRLH*ELGLELSLPKL 438
SN +G *H*NG I L + PSDQVEY+A* LEQ L EL LE LP+L
Sbjct: 574 SNSQGF*H*NGRIGLHMNMSSLS*FLFLSEQPSDQVEYQA*PLEQHLPRELVLEQYLPEL 395
Query: 439 PESHSGQHQHEYHLSLFGKQDPHEPRGSHK 528
PESH QH H YHLSLFG DPHEP HK
Sbjct: 394 PESHLRQHLHGYHLSLFGILDPHEP*WLHK 305
Score = 90.9 bits (192), Expect(2) = 7e-054
Identities = 44/89 (49%), Positives = 56/89 (62%)
Frame = +2 / -1
Query: 545 IWVFST*SNHLYGVLIIRTRQYVKAD*FPSRHNFVSSACLAEFLHSFPRTTTFCAG*LHP 724
+W+ T*S H + +LIIRTR+Y+ D F S HN + A LAE L+S R+TT A *LH
Sbjct: 285 VWICLT*SKHFHDILIIRTRRYINRDCFYSWHNLLPPA*LAEILYSLARSTTLRAC*LHS 106
Query: 725 EWPGKKKYKS*TPAR*TCFRCGSRRHTGS 811
E + + S TPA *T F GSRR+T S
Sbjct: 105 EGTSLQNHISRTPAS*TSFGFGSRRYTSS 19
Score = 90.0 bits (190), Expect(2) = 3e-051
Identities = 38/81 (46%), Positives = 53/81 (65%)
Frame = -1 / +3
Query: 818 LWWSRCASWNHT*NMSILQGFRIYIFFFRAIQDAINLHKMWWFWENCEGILQGMQRKQSC 639
L WS C N T N+S LQGF IY ++Q+AIN+ +WW W++C+G LQ MQ ++ C
Sbjct: 12 LQWSWCTCGNQTRNLSSLQGFWIYDSANWSLQNAINMLAVWWIWQDCKGFLQVMQGEEGC 191
Query: 638 AWKEISPP*HTAWFG**GHHK 576
A + S *+ AW+G**G H+
Sbjct: 192 ARNKNSLY*YIAWYG**GCHE 254
Score = 79.9 bits (168), Expect(2) = 2e-039
Identities = 36/76 (47%), Positives = 44/76 (57%)
Frame = +1 / -3
Query: 586 PHYPNQAVCQGGLISFQAQLCFLCMPCRIPSQFSQNHHILCRLIAS*MARKKKI*ILNPC 765
PH+P QA+ Q L F AQ CM CR P Q Q HH LIA * + + I NPC
Sbjct: 244 PHHPYQAIYQ*RLFLFLAQPSSPCMTCRNPLQSCQIHHTASMLIAF*RDQFAESYIQNPC 65
Query: 766 KIDMFQVWFQEAHRLH 813
K+D F+VWF + H+LH
Sbjct: 64 KLDKFRVWFPQVHQLH 17
Score = 78.0 bits (164), Expect(2) = 3e-044
Identities = 45/91 (49%), Positives = 57/91 (62%)
Frame = -3 / +2
Query: 819 SVVEPVCLLEPHLKHVYLAGVQDLYFFFPGHSGCNQPAQNVVVLGKL*RNSARHAEETKL 640
+ +E V L EP+ K V LAGV D+ F S CNQ A++VV L +L*R SA HA +L
Sbjct: 11 AAMELVYLREPNPKLV*LAGVLDI*FCKLVPSECNQHARSVVDLARL*RISASHAGGRRL 190
Query: 639 CLEGNQSALTYCLVRIMRTP*RWFDQVEKTQ 547
C E QS L Y LVR+MR *+ DQV++ Q
Sbjct: 191 CQE*KQSLLIYRLVRMMRMS*KCLDQVKQIQ 283
>gb|BQ763592.1|BQ763592 EBro02_SQ008_J22_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J22 5', mRNA sequence
Length = 700
Score = 219 bits (472), Expect(2) = 1e-067
Identities = 90/105 (85%), Positives = 98/105 (93%)
Frame = -2 / +1
Query: 541 RPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQP 362
RPGDLYV ++VREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTL+GDVVLK+KPGTQP
Sbjct: 109 RPGDLYVAIKVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLAGDVVLKVKPGTQP 288
Query: 361 GQRVVLRGKGIKTRNSPYHGDQYVHFNVNIPENLTSRQRELIEEF 227
GQ+VVLRGKGIKTRNS +GDQYVHFNV IP NLT +QR L+EEF
Sbjct: 289 GQKVVLRGKGIKTRNSYSYGDQYVHFNVKIPVNLTQKQRMLLEEF 423
Score = 154 bits (331), Expect(3) = 2e-045
Identities = 68/82 (82%), Positives = 73/82 (89%)
Frame = +3 / -3
Query: 246 RCLDVKFSGMLTLKWTY*SPWYGEFLVLIPFPLRTTL*PG*VPGLIFRTTSPLRVGT*TV 425
RC VKF+G+LTLKWTY SP+ EFLVLIPFPLRTT *PG*VPGL FRTTSP RVGT*TV
Sbjct: 404 RCFCVKFTGILTLKWTYWSPYEYEFLVLIPFPLRTTF*PG*VPGLTFRTTSPARVGT*TV 225
Query: 426 PPKIA*VTFRTAST*ISPFSLR 491
PP+IA*VTF+TAST ISPFSLR
Sbjct: 224 PPRIA*VTFKTASTWISPFSLR 159
Score = 140 bits (301), Expect(2) = 9e-037
Identities = 66/94 (70%), Positives = 75/94 (79%)
Frame = +2 / -2
Query: 260 QIFGDVDIEMDILISVVR*VSCLDPFSSQNYPLTRLSTGLDL*NNVSTESWDLNCPSQNC 439
QI + DIEMD+L+S+ *VSCLD FSSQN LTRLST L+L*NN+S ESW LN SQNC
Sbjct: 390 QIHRNFDIEMDVLVSI*I*VSCLDSFSSQNNFLTRLSTRLNL*NNISRESWYLNSTSQNC 211
Query: 440 LSHIQDSINMNITFLSSENRILTNLEGHIKITWT 541
LSHI DSI M+ITFLSSE ILTNL G+IK+T T
Sbjct: 210 LSHI*DSIYMDITFLSSEYWILTNLNGYIKVTRT 109
Score = 128 bits (275), Expect(2) = 2e-032
Identities = 59/93 (63%), Positives = 64/93 (68%)
Frame = -1 / +3
Query: 527 LCDPRGS*GSCFPKRER*YSC*CCPECDSGNFGRDSSSPNSQWRRCSKDQARYSTWSEGS 348
LC GS*GS PKRER*Y C CC +CDSGN GR SS NS+ R CSK A YSTWSE
Sbjct: 123 LCSH*GS*GSSIPKRER*YPCRCCLKCDSGNSGRYCSSTNSRGRCCSKG*AWYSTWSESC 302
Query: 347 SERKRDQDKKLTVPRRSICPFQCQHPRKFDV*T 249
SERKR+QDKKL R I PFQCQ+ +FD T
Sbjct: 303 SERKRNQDKKLIFIWRPIRPFQCQNSCEFDTET 401
Score = 123 bits (264), Expect(2) = 5e-029
Identities = 66/88 (75%), Positives = 67/88 (76%)
Frame = -3 / +2
Query: 540 VQVIFM*PSRFVRILFSEERKVIFMLMLS*M*LRQFWEGQFKSQLSVETLF*RSSPVLNL 361
V V FM*P RFVRI +SEERKVI M MLS*M*LRQFWE FK QLS E LF*R S VLNL
Sbjct: 110 VLVTFM*PLRFVRIQYSEERKVISM*MLS*M*LRQFWEVLFKYQLSREMLF*RLSLVLNL 289
Query: 360 VRG*F*EEKGSRQETHRTTEINMSISMS 277
VR F*EEK SRQETH E N SISMS
Sbjct: 290 VRKLF*EEKESRQETHIHMETNTSISMS 373
Score = 59.3 bits (123), Expect(2) = 1e-067
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = -2 / +1
Query: 646 KVVPGRKSVRLDILPGSDNEDTIKVVRSGGEDPDG 542
KVVPG K+V +DI PG+D+ED +KV+RSG DPDG
Sbjct: 1 KVVPGIKTVSIDIAPGTDDEDVMKVLRSGQADPDG 105
Score = 45.1 bits (92), Expect(3) = 2e-045
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2 / -2
Query: 545 IWVFST*SNHLYGVLIIRTRQYVKAD*FPSRHN 643
+W+ T*S H + +LIIRTR+Y+ D F S HN
Sbjct: 102 VWICLT*SKHFHDILIIRTRRYINRDCFYSWHN 4
Score = 34.1 bits (68), Expect(2) = 9e-037
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3 / -3
Query: 576 FMVSSLSEPGSMSRRTDFLPGTT 644
FM SS S PG++S T F+PGTT
Sbjct: 71 FMTSSSSVPGAISIETVFIPGTT 3
Score = 31.3 bits (62), Expect(2) = 2e-032
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3 / +2
Query: 645 KLCLEGNQSALTYCLVRIMRTP*RWFDQVEKTQ 547
+LC E QS L LVR+MR *+ DQV++ Q
Sbjct: 2 RLCQE*KQSLLI*RLVRMMRMS*KCLDQVKQIQ 100
Score = 24.9 bits (48), Expect(2) = 5e-029
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1 / +3
Query: 641 CAWKEISPP*HTAWFG**GHHK 576
CA + S *++AW+G**G H+
Sbjct: 6 CARNKNSLY*YSAWYG**GCHE 71
Score = 22.6 bits (43), Expect(3) = 2e-045
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -1
Query: 145 WLLKPAIP 168
WLL+PAIP
Sbjct: 502 WLLRPAIP 479
>gb|CA008602.1|CA008602 HU11H19r HU Hordeum vulgare subsp. vulgare cDNA clone HU11H19
5-PRIME, mRNA sequence
Length = 476
Score = 223 bits (481), Expect = 2e-057
Identities = 90/140 (64%), Positives = 105/140 (75%)
Frame = -2 / +1
Query: 961 MNDFFRNILGDRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTP 782
MNDF RNI DR+ GG+DVKV LELS +EA +GC KT+ FQT VTCE C GAGVP GT P
Sbjct: 34 MNDFLRNIFKDRESGGQDVKVKLELSFMEAVEGCKKTINFQTLVTCETCNGAGVPAGTKP 213
Query: 781 ETCLXXXXXXXXXXXXXXFRMQSTCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILP 602
ETCL FRMQSTC++CGGSGKTVK+FCK+CRG KVVPG K+V +DI P
Sbjct: 214 ETCLACRGSGYMILQTGPFRMQSTCSQCGGSGKTVKDFCKSCRGKKVVPGIKTVSIDIAP 393
Query: 601 GSDNEDTIKVVRSGGEDPDG 542
G+D+ED +KV+RSG DPDG
Sbjct: 394 GTDDEDVMKVLRSGQADPDG 453
Score = 173 bits (373), Expect = 2e-042
Identities = 74/129 (57%), Positives = 84/129 (65%)
Frame = +3 / -1
Query: 576 FMVSSLSEPGSMSRRTDFLPGTTLFPLHALQNSFTVFPEPPHFVQVDCILNGPEKKNINP 755
FM SS S PG++S T F+PGTT FPLH LQ SFTV P+PPH VDCIL GP + I P
Sbjct: 419 FMTSSSSVPGAISIETVFIPGTTFFPLHDLQKSFTVLPDPPHCEHVDCILKGPVCRIIYP 240
Query: 756 EPLQDRHVSGVVPGGTPAPPQISHVTDVWKVTVLLQPXXXXXXXXXXXXXXXRPPKSLSP 935
EPLQ R VSG+VP GTPAP Q+SHVT VWK+ V L P PP SLS
Sbjct: 239 EPLQARQVSGLVPAGTPAPLQVSHVTKVWKLIVFLHPSTASINDNSSLTLTSCPPDSLSL 60
Query: 936 RMFLKKSFI 962
+MF +KSFI
Sbjct: 59 KMFRRKSFI 33
Score = 149 bits (319), Expect = 5e-035
Identities = 70/146 (47%), Positives = 93/146 (63%)
Frame = +2 / -3
Query: 545 IWVFST*SNHLYGVLIIRTRQYVKAD*FPSRHNFVSSACLAEFLHSFPRTTTFCAG*LHP 724
+W+ T*S H + +LIIRTR+Y+ D F S HN + A LAE L+S R+TT A *LH
Sbjct: 450 VWICLT*SKHFHDILIIRTRRYINRDCFYSWHNLLPPA*LAEILYSLARSTTLRAC*LHS 271
Query: 725 EWPGKKKYKS*TPAR*TCFRCGSRRHTGSTTDFTCYRRLEGDRFAATLSCFHR**FECNL 904
E + + S TPA *T F GSRR+T S F CY LE D A+ +CFH+** + NL
Sbjct: 270 EGTSLQNHISRTPAS*TSFGFGSRRYTSSIAGFACY*SLEVDCLFASFNCFHK**LKLNL 91
Query: 905 NISSSKVPIPENVPKEIIHSTTATAT 982
N+ S++ I E+VPK+IIHS + +T
Sbjct: 90 NVLSTRFSIFEDVPKKIIHSASTAST 13
Score = 128 bits (275), Expect = 6e-029
Identities = 61/129 (47%), Positives = 83/129 (64%)
Frame = -1 / +3
Query: 962 NE*FL*EHSRG*GLWRTRC*GCTRTIICGSSSRLQQNGHLPNVCNM*NLWWSRCASWNHT 783
NE*F EH + * +W T *G II GSS R+Q++ LP+ NM NL WS C N T
Sbjct: 33 NE*FSSEHLQR*RIWWTGR*G*A*VIIYGSS*RMQKDNQLPDFSNMRNLQWSWCTCGNQT 212
Query: 782 *NMSILQGFRIYIFFFRAIQDAINLHKMWWFWENCEGILQGMQRKQSCAWKEISPP*HTA 603
N+S LQGF IY ++Q+AIN+ +WW W++C+G LQ MQ ++ CA + S *++A
Sbjct: 213 RNLSSLQGFWIYDSANWSLQNAINMLAVWWIWQDCKGFLQVMQGEEGCARNKNSLY*YSA 392
Query: 602 WFG**GHHK 576
W+G**G H+
Sbjct: 393 WYG**GCHE 419
Score = 125 bits (268), Expect = 6e-028
Identities = 72/145 (49%), Positives = 88/145 (60%)
Frame = -3 / +2
Query: 981 VAVAVVE*MISLGTFSGIGTLEDEMLRLHSNYHLWKQLKVAAKRSPSKRL*HVKSVVEPV 802
V + E*MI GT S I L D LRL +YHLWKQLK A ++S S+ *H K +E V
Sbjct: 14 VLAVLAE*MIFFGTSSKIENLVDRTLRLSLSYHLWKQLKDAKRQSTSRL**HAKPAMELV 193
Query: 801 CLLEPHLKHVYLAGVQDLYFFFPGHSGCNQPAQNVVVLGKL*RNSARHAEETKLCLEGNQ 622
L EP+ K V LAGV D+ F S CNQ A++VV L +L*R SA HA +LC E Q
Sbjct: 194 YLREPNPKLV*LAGVLDI*FCKLVPSECNQHARSVVDLARL*RISASHAGGRRLCQE*KQ 373
Query: 621 SALTYCLVRIMRTP*RWFDQVEKTQ 547
S L LVR+MR *+ DQV++ Q
Sbjct: 374 SLLI*RLVRMMRMS*KCLDQVKQIQ 448
Score = 105 bits (225), Expect = 5e-022
Identities = 56/120 (46%), Positives = 66/120 (55%)
Frame = +1 / -2
Query: 586 PHYPNQAVCQGGLISFQAQLCFLCMPCRIPSQFSQNHHILCRLIAS*MARKKKI*ILNPC 765
PH+P QA+ Q L F AQ CM CR P Q Q HH LIA * + + I NPC
Sbjct: 409 PHHPYQALYQ*RLFLFLAQPSSPCMTCRNPLQSCQIHHTASMLIAF*RDQFAESYIQNPC 230
Query: 766 KIDMFQVWFQEAHRLHHRFHMLQTFGR*PFCCNLELLPQMIVRVQP*HLVLQSPYPRECS 945
K+D F+VWF + H+LH RF ML G * C L+LLP MI + P* V Q Y CS
Sbjct: 229 KLDKFRVWFPQVHQLHCRFRMLLKSGS*LSFCILQLLP*MITQA*P*RPVHQILYL*RCS 50
>gb|BF255201.2|BF255201 HVSMEf0006D16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0006D16f, mRNA sequence
Length = 607
Score = 181 bits (390), Expect = 8e-045
Identities = 72/84 (85%), Positives = 78/84 (92%)
Frame = -2 / +2
Query: 1294 HGTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYE 1115
HGTRPVAARDYYDVLGV K A Q EIKKAYY LAKKLHPDTNKGDADAERKFQEVQ+AYE
Sbjct: 290 HGTRPVAARDYYDVLGVKKDAGQGEIKKAYYALAKKLHPDTNKGDADAERKFQEVQKAYE 469
Query: 1114 TLKDEQKRSLYDQVGPDQYEKTAS 1043
TLKDE+KR++YDQVGPDQYE+ A+
Sbjct: 470 TLKDEEKRTVYDQVGPDQYERAAA 541
Score = 154 bits (331), Expect = 1e-036
Identities = 71/109 (65%), Positives = 77/109 (70%)
Frame = +1 / -3
Query: 1027 QFRLRQKQFSHTDQGQPDHIMIFFVHPLESHKLVEPLETCVLHPHHLYLCLDGASLQAHN 1206
Q RQ+Q SH DQGQPDH FF+HP +SHKL EPLET LH HHLYL LDGAS QA N
Sbjct: 557 QVHHRQQQPSHIDQGQPDHRPFFFLHPSKSHKLSEPLETFFLHRHHLYLYLDGASSQARN 378
Query: 1207 RPF*SPPGWRSC*RRAHRSSPLPPPAWSRGRTCGRCSADRRESSGRAHR 1353
P *S PG R *R+A RSSP PP AWSRGRT SA RR++S RA R
Sbjct: 377 TPS*SRPGRRPS*RQARRSSPSPPRAWSRGRTWRVRSARRRDASRRAPR 231
Score = 143 bits (306), Expect = 3e-033
Identities = 67/108 (62%), Positives = 75/108 (69%)
Frame = -3 / +3
Query: 1347 RPPGALPSIRRAAPAGPSTGPGRWRQGTTTMCXXXXXXXXXXXSKRPIMGLQRSSIQTQI 1168
RPPG +PS RRA G STGPG WR+GTTT C S+R I L+RSSIQ QI
Sbjct: 237 RPPGGIPSPRRADTPGSSTGPGPWRRGTTTTCLASRRTPARARSRRRITRLRRSSIQIQI 416
Query: 1167 KVMRMQNASFKRFNELMRL*RMNKKDHYMIRLALISMRKLLLAEAELA 1024
KVM MQ SFKRF +LMRL*RM KK+ MIRLALI+MR LLLA +LA
Sbjct: 417 KVMPMQKESFKRFRKLMRL*RMKKKERSMIRLALINMRGLLLAVVDLA 560
Score = 118 bits (252), Expect(2) = 5e-029
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = -1 / +1
Query: 1346 ALPELSLLSAEQRPQVLPRDQAGGGKGLLRCARRQQERQPGGDQKGLLWACKEAPSRHK* 1167
AL E SLL AE+ QVLPRDQA GG+GLLR A RQ+ R+PG DQ+G+L AC+EAPSR+K*
Sbjct: 238 ALLEASLLLAERTRQVLPRDQARGGEGLLRRAWRQEGRRPGRDQEGVLRACEEAPSRYK* 417
Query: 1166 R*CGCRTQVSRGSTSL*D 1113
R*C CR +VSRGS SL*D
Sbjct: 418 R*CRCRKKVSRGSESL*D 471
Score = 111 bits (237), Expect = 1e-023
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = +2 / -1
Query: 1145 AFCIRITFICVWMELLCKPIIGLFDLRLAGALADAEHIVVVPCRHRPGPVEGPAGAARRI 1324
+FCI ITFIC+WMELL K +I L DL LAG L DA+H+VVVP RH PGPVE P +ARR
Sbjct: 439 SFCIGITFICIWMELLRKRVIRLLDLALAGVLLDAKHVVVVPRRHGPGPVEEPGVSARRG 260
Query: 1325 EGRAPGGR 1348
EG PGGR
Sbjct: 259 EGMPPGGR 236
Score = 105 bits (223), Expect = 9e-022
Identities = 54/85 (63%), Positives = 56/85 (65%)
Frame = +3 / -2
Query: 1047 AVFSY*SGPT*SYNDLFCSSFRVS*AR*TS*NLRSASASPLFVSGWSFFASP**AFLISA 1226
A SY*SGPT*S LF SSF+VS*A *TS*N SASASPLFVSGWSFFAS * AFLIS
Sbjct: 537 AALSY*SGPT*S*TVLFSSSFKVS*AF*TS*NFLSASASPLFVSGWSFFASA*YAFLISP 358
Query: 1227 WXXXXXXXXXXXXXXXXXGLVPWKD 1301
W GLVPWK+
Sbjct: 357 WPASFLTPSTS**SLAATGLVPWKN 283
Score = 30.4 bits (60), Expect(2) = 5e-029
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / +1
Query: 1073 WP*SV*ENCFWRRRNW 1026
WP*S+*E C WR W
Sbjct: 511 WP*SI*EGCCWRWWTW 558
>gb|CA009093.1|CA009093 HU13C12r HU Hordeum vulgare subsp. vulgare cDNA clone HU13C12
5-PRIME, mRNA sequence
Length = 380
Score = 181 bits (390), Expect = 8e-045
Identities = 72/84 (85%), Positives = 78/84 (92%)
Frame = -2 / +1
Query: 1294 HGTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYE 1115
HGTRPVAARDYYDVLGV K A Q EIKKAYY LAKKLHPDTNKGDADAERKFQEVQ+AYE
Sbjct: 64 HGTRPVAARDYYDVLGVKKDAGQGEIKKAYYALAKKLHPDTNKGDADAERKFQEVQKAYE 243
Query: 1114 TLKDEQKRSLYDQVGPDQYEKTAS 1043
TLKDE+KR++YDQVGPDQYE+ A+
Sbjct: 244 TLKDEEKRTVYDQVGPDQYERAAA 315
Score = 154 bits (331), Expect = 1e-036
Identities = 71/109 (65%), Positives = 77/109 (70%)
Frame = +1 / -2
Query: 1027 QFRLRQKQFSHTDQGQPDHIMIFFVHPLESHKLVEPLETCVLHPHHLYLCLDGASLQAHN 1206
Q RQ+Q SH DQGQPDH FF+HP +SHKL EPLET LH HHLYL LDGAS QA N
Sbjct: 331 QVHHRQQQPSHIDQGQPDHRPFFFLHPSKSHKLSEPLETFFLHRHHLYLYLDGASSQARN 152
Query: 1207 RPF*SPPGWRSC*RRAHRSSPLPPPAWSRGRTCGRCSADRRESSGRAHR 1353
P *S PG R *R+A RSSP PP AWSRGRT SA RR++S RA R
Sbjct: 151 TPS*SRPGRRPS*RQARRSSPSPPRAWSRGRTWRVRSARRRDASRRAPR 5
Score = 143 bits (306), Expect = 3e-033
Identities = 67/108 (62%), Positives = 75/108 (69%)
Frame = -3 / +2
Query: 1347 RPPGALPSIRRAAPAGPSTGPGRWRQGTTTMCXXXXXXXXXXXSKRPIMGLQRSSIQTQI 1168
RPPG +PS RRA G STGPG WR+GTTT C S+R I L+RSSIQ QI
Sbjct: 11 RPPGGIPSPRRADTPGSSTGPGPWRRGTTTTCLASRRTPARARSRRRITRLRRSSIQIQI 190
Query: 1167 KVMRMQNASFKRFNELMRL*RMNKKDHYMIRLALISMRKLLLAEAELA 1024
KVM MQ SFKRF +LMRL*RM KK+ MIRLALI+MR LLLA +LA
Sbjct: 191 KVMPMQKESFKRFRKLMRL*RMKKKERSMIRLALINMRGLLLAVVDLA 334
Score = 118 bits (252), Expect(2) = 5e-029
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = -1 / +3
Query: 1346 ALPELSLLSAEQRPQVLPRDQAGGGKGLLRCARRQQERQPGGDQKGLLWACKEAPSRHK* 1167
AL E SLL AE+ QVLPRDQA GG+GLLR A RQ+ R+PG DQ+G+L AC+EAPSR+K*
Sbjct: 12 ALLEASLLLAERTRQVLPRDQARGGEGLLRRAWRQEGRRPGRDQEGVLRACEEAPSRYK* 191
Query: 1166 R*CGCRTQVSRGSTSL*D 1113
R*C CR +VSRGS SL*D
Sbjct: 192 R*CRCRKKVSRGSESL*D 245
Score = 112 bits (239), Expect = 6e-024
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = +2 / -3
Query: 1145 AFCIRITFICVWMELLCKPIIGLFDLRLAGALADAEHIVVVPCRHRPGPVEGPAGAARRI 1324
+FCI ITFIC+WMELL K +I L DL LAG L DA+H+VVVP RH PGPVE P +ARR
Sbjct: 213 SFCIGITFICIWMELLRKRVIRLLDLALAGVLLDAKHVVVVPRRHGPGPVEEPGVSARRG 34
Query: 1325 EGRAPGGRI 1351
EG PGGR+
Sbjct: 33 EGMPPGGRL 7
Score = 105 bits (223), Expect = 9e-022
Identities = 54/85 (63%), Positives = 56/85 (65%)
Frame = +3 / -1
Query: 1047 AVFSY*SGPT*SYNDLFCSSFRVS*AR*TS*NLRSASASPLFVSGWSFFASP**AFLISA 1226
A SY*SGPT*S LF SSF+VS*A *TS*N SASASPLFVSGWSFFAS * AFLIS
Sbjct: 311 AALSY*SGPT*S*TVLFSSSFKVS*AF*TS*NFLSASASPLFVSGWSFFASA*YAFLISP 132
Query: 1227 WXXXXXXXXXXXXXXXXXGLVPWKD 1301
W GLVPWK+
Sbjct: 131 WPASFLTPSTS**SLAATGLVPWKN 57
Score = 30.4 bits (60), Expect(2) = 5e-029
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / +3
Query: 1073 WP*SV*ENCFWRRRNW 1026
WP*S+*E C WR W
Sbjct: 285 WP*SI*EGCCWRWWTW 332
>gb|BF617607.2|BF617607 HVSMEc0018E10f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0018E10f, mRNA sequence
Length = 802
Score = 178 bits (383), Expect = 8e-044
Identities = 71/83 (85%), Positives = 76/83 (91%)
Frame = -2 / +1
Query: 1294 HGTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYE 1115
HGTRPVAARDYYDVLGV K A Q EIKKAYY LAKKLHPDTNKGDADAERKFQEVQ+AYE
Sbjct: 286 HGTRPVAARDYYDVLGVKKDAGQGEIKKAYYALAKKLHPDTNKGDADAERKFQEVQKAYE 465
Query: 1114 TLKDEQKRSLYDQVGPDQYEKTA 1046
TLKDE+ R++YDQVGPDQYE+ A
Sbjct: 466 TLKDEETRTVYDQVGPDQYERAA 534
Score = 146 bits (313), Expect = 3e-034
Identities = 68/109 (62%), Positives = 74/109 (67%)
Frame = +1 / -1
Query: 1027 QFRLRQKQFSHTDQGQPDHIMIFFVHPLESHKLVEPLETCVLHPHHLYLCLDGASLQAHN 1206
Q LR +Q SH DQ QPDH F+HP +SHKL EPLET LH HHLY LDGAS QA N
Sbjct: 553 QVYLRHQQPSHIDQAQPDHRPFLFLHPSKSHKLSEPLETFFLHRHHLYSYLDGASSQARN 374
Query: 1207 RPF*SPPGWRSC*RRAHRSSPLPPPAWSRGRTCGRCSADRRESSGRAHR 1353
P *S PG R *R+A RSSP PP AWSRGRT SA RR++S RA R
Sbjct: 373 TPS*SRPGRRPS*RQARRSSPSPPRAWSRGRTWRVRSARRRDASRRAPR 227
Score = 139 bits (298), Expect = 4e-032
Identities = 64/108 (59%), Positives = 75/108 (69%)
Frame = -3 / +2
Query: 1347 RPPGALPSIRRAAPAGPSTGPGRWRQGTTTMCXXXXXXXXXXXSKRPIMGLQRSSIQTQI 1168
RPPG +PS RRA G STGPG WR+GTTT C S+R I L+RSSIQ +I
Sbjct: 233 RPPGGIPSPRRADTPGSSTGPGPWRRGTTTTCLASRRTPARARSRRRITRLRRSSIQIRI 412
Query: 1167 KVMRMQNASFKRFNELMRL*RMNKKDHYMIRLALISMRKLLLAEAELA 1024
KVM MQ SFKRF +LMRL*RM K++ MIRL LI+MR LL+AE +LA
Sbjct: 413 KVMPMQKESFKRFRKLMRL*RMKKQERSMIRLGLINMRGLLVAEVDLA 556
Score = 116 bits (248), Expect(2) = 1e-028
Identities = 54/78 (69%), Positives = 64/78 (82%)
Frame = -1 / +3
Query: 1346 ALPELSLLSAEQRPQVLPRDQAGGGKGLLRCARRQQERQPGGDQKGLLWACKEAPSRHK* 1167
AL E SLL AE+ QVLPRDQA GG+GLLR A RQ+ R+PG DQ+G+L AC+EAPSR++*
Sbjct: 234 ALLEASLLLAERTRQVLPRDQARGGEGLLRRAWRQEGRRPGRDQEGVLRACEEAPSRYE* 413
Query: 1166 R*CGCRTQVSRGSTSL*D 1113
R*C CR +VSRGS SL*D
Sbjct: 414 R*CRCRKKVSRGSESL*D 467
Score = 105 bits (225), Expect = 5e-022
Identities = 45/68 (66%), Positives = 51/68 (75%)
Frame = +2 / -2
Query: 1145 AFCIRITFICVWMELLCKPIIGLFDLRLAGALADAEHIVVVPCRHRPGPVEGPAGAARRI 1324
+FCI ITFI +WMELL K +I L DL LAG L DA+H+VVVP RH PGPVE P +ARR
Sbjct: 435 SFCIGITFIRIWMELLRKRVIRLLDLALAGVLLDAKHVVVVPRRHGPGPVEEPGVSARRG 256
Query: 1325 EGRAPGGR 1348
EG PGGR
Sbjct: 255 EGMPPGGR 232
Score = 101 bits (216), Expect = 8e-021
Identities = 53/85 (62%), Positives = 55/85 (64%)
Frame = +3 / -3
Query: 1047 AVFSY*SGPT*SYNDLFCSSFRVS*AR*TS*NLRSASASPLFVSGWSFFASP**AFLISA 1226
A SY*SGPT*S L SSF+VS*A *TS*N SASASPLFVSGWSFFAS * AFLIS
Sbjct: 533 AALSY*SGPT*S*TVLVSSSFKVS*AF*TS*NFLSASASPLFVSGWSFFASA*YAFLISP 354
Query: 1227 WXXXXXXXXXXXXXXXXXGLVPWKD 1301
W GLVPWK+
Sbjct: 353 WPASFLTPSTS**SLAATGLVPWKN 279
Score = 31.3 bits (62), Expect(2) = 1e-028
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +3
Query: 1073 WP*SV*ENCFWRRRNW 1026
W *S+*E C+WRR W
Sbjct: 507 WA*SI*EGCWWRR*TW 554
>gb|BF618562.2|BF618562 HVSMEc0006C15f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0006C15f, mRNA sequence
Length = 559
Score = 177 bits (381), Expect = 1e-043
Identities = 71/84 (84%), Positives = 77/84 (91%)
Frame = -2 / +3
Query: 1294 HGTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERKFQEVQRAYE 1115
HGTRPVAARDYYDVLGV K A Q EIKKAYY LAKKLHPDTNKGDADAERKFQEVQ+AYE
Sbjct: 297 HGTRPVAARDYYDVLGVKKDAGQGEIKKAYYALAKKLHPDTNKGDADAERKFQEVQKAYE 476
Query: 1114 TLKDEQKRSLYDQVGPDQYEKTAS 1043
TLKDE+KR+ YDQVGP+QYE+ A+
Sbjct: 477 TLKDEEKRTGYDQVGPEQYERAAA 548
Score = 150 bits (323), Expect = 1e-035
Identities = 69/105 (65%), Positives = 75/105 (71%)
Frame = +1 / -2
Query: 1039 RQKQFSHTDQGQPDHIMIFFVHPLESHKLVEPLETCVLHPHHLYLCLDGASLQAHNRPF* 1218
RQ+Q SH QGQPDH FF+HP +SHKL EPLET LH HHLYL LDGAS QA N P *
Sbjct: 552 RQQQPSHIVQGQPDHSPFFFLHPSKSHKLFEPLETFFLHRHHLYLYLDGASSQARNTPS* 373
Query: 1219 SPPGWRSC*RRAHRSSPLPPPAWSRGRTCGRCSADRRESSGRAHR 1353
S PG R *R+A RSSP PP AWSRGRT SA RR++S RA R
Sbjct: 372 SRPGRRPS*RQARRSSPSPPRAWSRGRTWRVRSARRRDASRRAPR 238
Score = 136 bits (291), Expect = 4e-031
Identities = 64/103 (62%), Positives = 71/103 (68%)
Frame = -3 / +1
Query: 1347 RPPGALPSIRRAAPAGPSTGPGRWRQGTTTMCXXXXXXXXXXXSKRPIMGLQRSSIQTQI 1168
RPPG +PS RRA G STGPG WR+GTTT C S+R I L+RSSIQ QI
Sbjct: 244 RPPGGIPSPRRADTPGSSTGPGPWRRGTTTTCLASRRTPARARSRRRITRLRRSSIQIQI 423
Query: 1167 KVMRMQNASFKRFNELMRL*RMNKKDHYMIRLALISMRKLLLA 1039
KVM MQ SFKRF +LMRL*RM KK+ MIRLAL +MR LLLA
Sbjct: 424 KVMPMQKESFKRFKKLMRL*RMKKKERAMIRLALNNMRGLLLA 552
Score = 118 bits (252), Expect(2) = 7e-028
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = -1 / +2
Query: 1346 ALPELSLLSAEQRPQVLPRDQAGGGKGLLRCARRQQERQPGGDQKGLLWACKEAPSRHK* 1167
AL E SLL AE+ QVLPRDQA GG+GLLR A RQ+ R+PG DQ+G+L AC+EAPSR+K*
Sbjct: 245 ALLEASLLLAERTRQVLPRDQARGGEGLLRRAWRQEGRRPGRDQEGVLRACEEAPSRYK* 424
Query: 1166 R*CGCRTQVSRGSTSL*D 1113
R*C CR +VSRGS SL*D
Sbjct: 425 R*CRCRKKVSRGSKSL*D 478
Score = 111 bits (237), Expect = 1e-023
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 1145 AFCIRITFICVWMELLCKPIIGLFDLRLAGALADAEHIVVVPCRHRPGPVEGPAGAARRI 1324
+FCI ITFIC+WMELL K +I L DL LAG L DA+H+VVVP RH PGPVE P +ARR
Sbjct: 446 SFCIGITFICIWMELLRKRVIRLLDLALAGVLLDAKHVVVVPRRHGPGPVEEPGVSARRG 267
Query: 1325 EGRAPGGR 1348
EG PGGR
Sbjct: 266 EGMPPGGR 243
Score = 101 bits (216), Expect = 8e-021
Identities = 53/85 (62%), Positives = 55/85 (64%)
Frame = +3 / -1
Query: 1047 AVFSY*SGPT*SYNDLFCSSFRVS*AR*TS*NLRSASASPLFVSGWSFFASP**AFLISA 1226
A SY SGPT*S LF SSF+VS*A *TS*N SASASPLFVSGWSFFAS * AFLIS
Sbjct: 544 AALSYCSGPT*S*PVLFSSSFKVS*AF*TS*NFLSASASPLFVSGWSFFASA*YAFLISP 365
Query: 1227 WXXXXXXXXXXXXXXXXXGLVPWKD 1301
W GLVPWK+
Sbjct: 364 WPASFLTPSTS**SLAATGLVPWKN 290
Score = 26.7 bits (52), Expect(2) = 7e-028
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / +2
Query: 1073 WP*SV*ENCFWR 1038
WP*++*E C WR
Sbjct: 518 WP*TI*EGCCWR 553
>gb|BF626985.3|BF626985 HVSMEb0001O07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0001O07f, mRNA sequence
Length = 881
Score = 101 bits (215), Expect(2) = 1e-028
Identities = 42/62 (67%), Positives = 47/62 (75%)
Frame = +2 / -1
Query: 1163 TFICVWMELLCKPIIGLFDLRLAGALADAEHIVVVPCRHRPGPVEGPAGAARRIEGRAPG 1342
TFIC+WMELL K +I L DL LAG L DA+H+VVVP RH PGPVE P +ARR EG PG
Sbjct: 401 TFICIWMELLRKRVIRLLDLALAGVLLDAKHVVVVPRRHGPGPVEEPGVSARRGEGMPPG 222
Query: 1343 GR 1348
GR
Sbjct: 221 GR 216
Score = 100 bits (212), Expect(2) = 2e-035
Identities = 40/51 (78%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 1294 HGTRPVAARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNKGDADAERK 1142
HGTRPVAARDYYDVLGV K A Q EIKKAYY LAKKLHPDTNKG +K
Sbjct: 270 HGTRPVAARDYYDVLGVKKDAGQGEIKKAYYALAKKLHPDTNKGGCRCSKK 422
Score = 91.3 bits (193), Expect(2) = 4e-024
Identities = 42/61 (68%), Positives = 50/61 (81%)
Frame = -1 / +2
Query: 1346 ALPELSLLSAEQRPQVLPRDQAGGGKGLLRCARRQQERQPGGDQKGLLWACKEAPSRHK* 1167
AL E SLL AE+ QVLPRDQA GG+GLLR A RQ+ R+PG DQ+G+L AC+EAPSR+K*
Sbjct: 218 ALLEASLLLAERTRQVLPRDQARGGEGLLRRAWRQEGRRPGRDQEGVLRACEEAPSRYK* 397
Query: 1166 R 1164
R
Sbjct: 398 R 400
Score = 86.3 bits (182), Expect(2) = 5e-022
Identities = 42/64 (65%), Positives = 45/64 (70%)
Frame = +1 / -3
Query: 1162 HLYLCLDGASLQAHNRPF*SPPGWRSC*RRAHRSSPLPPPAWSRGRTCGRCSADRRESSG 1341
HLYL LDGAS QA N P *S PG R *R+A RSSP PP AWSRGRT SA RR++S
Sbjct: 402 HLYLYLDGASSQARNTPS*SRPGRRPS*RQARRSSPSPPRAWSRGRTWRVRSARRRDASR 223
Query: 1342 RAHR 1353
RA R
Sbjct: 222 RAPR 211
Score = 70.3 bits (147), Expect(2) = 2e-035
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -2 / +1
Query: 1168 KGDADAERKFQEVQRAYETLKDEQKRSLYDQVGPDQYEK 1052
K DADA RK+QEVQ+AYET+ DE+KR+ YDQVGPDQ EK
Sbjct: 397 KVDADAARKWQEVQKAYETVSDEEKRTGYDQVGPDQ*EK 513
Score = 46.4 bits (95), Expect(2) = 1e-028
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1 / -2
Query: 1054 SHTDQGQPDHIMIFFVHPLESHKLVEPLETCVLHPH 1161
S DQG PDH F+H +SHKL PL T +LH H
Sbjct: 511 SPIDQGPPDHSPFSFLHRSQSHKLSAPLATFLLHRH 404
Score = 40.9 bits (83), Expect(2) = 4e-024
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -3 / +2
Query: 1161 MRMQNASFKRFNELMRL*RMNKKDHYMIRLALISMRK 1051
M MQ S KR +LMRL* M K++ MIR ALI+ R+
Sbjct: 404 MPMQQESGKRCRKLMRL*AMKKRERAMIRWALINRRR 514
Score = 39.1 bits (79), Expect(2) = 5e-022
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +3 / -1
Query: 1053 FSY*SGPT*SYNDLFCSSFRVS*AR*TS*NLRSASAS 1163
FSY*SGPT*S LF SS VS*A TS + +ASAS
Sbjct: 512 FSY*SGPT*S*PVLFSSSLTVS*AFCTSCHFLAASAS 402
>gb|CA008022.1|CA008022 HU09K22r HU Hordeum vulgare subsp. vulgare cDNA clone HU09K22
5-PRIME, mRNA sequence
Length = 307
Score = 111 bits (238), Expect(2) = 9e-025
Identities = 46/86 (53%), Positives = 52/86 (60%)
Frame = +3 / -2
Query: 672 SFTVFPEPPHFVQVDCILNGPEKKNINPEPLQDRHVSGVVPGGTPAPPQISHVTDVWKVT 851
SFTV P+PPH VDCI+ GP + I PEPLQ R VSG+VP GTPAP Q+SHVT VWK+
Sbjct: 306 SFTVLPDPPHCEHVDCIMKGPVCRIIYPEPLQARQVSGLVPAGTPAPLQVSHVTKVWKLI 127
Query: 852 VLLQPXXXXXXXXXXXXXXXRPPKSL 929
V L P PP SL
Sbjct: 126 VFLHPSTASINDNSSLTLTSCPPDSL 49
Score = 95.9 bits (203), Expect(2) = 3e-025
Identities = 39/61 (63%), Positives = 44/61 (72%)
Frame = -2 / +2
Query: 952 FFRNILGDRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
FF R+ GG+DVKV LELS +EA +GC KT+ FQT VTCE C GAGVP GT PETC
Sbjct: 26 FFGTSSKYRESGGQDVKVKLELSFMEAVEGCKKTINFQTLVTCETCNGAGVPAGTKPETC 205
Query: 772 L 770
L
Sbjct: 206 L 208
Score = 40.5 bits (82), Expect(2) = 3e-025
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = -2 / +2
Query: 721 MQSTCTKCGGSGKTVKE 671
MQSTC++CGGSGKTVK+
Sbjct: 257 MQSTCSQCGGSGKTVKD 307
Score = 22.6 bits (43), Expect(2) = 9e-025
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2 / -2
Query: 935 ENVPKEIIHS 964
E+VPK+IIHS
Sbjct: 42 EDVPKKIIHS 13
>gb|BU997932.1|BU997932 HI09H10r HI Hordeum vulgare subsp. vulgare cDNA clone HI09H10
5-PRIME, mRNA sequence
Length = 602
Score = 65.2 bits (136), Expect(3) = 2e-023
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = -2 / +3
Query: 544 GRPGDLYVTLEVREDPVFRREKGDIHVDAVLNVTQAILGGTVQVPTLSGDVVLKIKPGTQ 365
G PGDL+V L+V E +R+ +++ ++ +AILG +V T+ G L+I PGTQ
Sbjct: 375 GPPGDLFVCLDVEEPSDIKRDGINLYSTVSISYIEAILGTVEKVRTVEGSSELRIPPGTQ 554
Query: 364 PGQRVVLRGKGIKTRN 317
PG +VL +G+ + N
Sbjct: 555 PGDVLVLAKQGVPSLN 602
Score = 53.3 bits (110), Expect(3) = 2e-023
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2 / +3
Query: 715 STCTKCGGSGKTVKEFCKACRGNKVVPGRKSVRLDILPGSDNEDTIKVVRSGGEDPDGRP 536
S C C G G+ + E+C+ C G V RK +++ I PG T++V G P G P
Sbjct: 201 SICPTCVGEGEVISEYCRKCSGEGRVRIRKEIKVKIPPGVSKGSTLRVRGEGDAGPKGGP 380
Score = 29.0 bits (57), Expect(3) = 2e-023
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2 / +3
Query: 877 EAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
EA G K + TC+ C G+G G+ + C
Sbjct: 27 EAIFGTEKDIILSHLETCDACSGSGSKAGSKAKIC 131
>gb|BG310172.2|BG310172 HVSMEc0016F13f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0016F13f, mRNA sequence
Length = 835
Score = 55.6 bits (115), Expect(4) = 4e-021
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -2 / +1
Query: 1276 AARDYYDVLGVSKSASQAEIKKAYYGLAKKLHPDTNK 1166
A D+Y VLGVS++AS++EIK AY LA+ HPD NK
Sbjct: 172 AESDFYSVLGVSRNASKSEIKSAYRKLARSYHPDVNK 282
Score = 43.7 bits (89), Expect(4) = 4e-021
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = -2 / +1
Query: 1153 AERKFQEVQRAYETLKDEQKRSLYDQVG 1070
AE+KF+++ AYE L D++KR++YD+ G
Sbjct: 292 AEQKFKDISNAYEVLSDDEKRAIYDKYG 375
Score = 41.8 bits (85), Expect(4) = 4e-021
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -2 / +1
Query: 931 DRDFGGRDVKVALELSSVEAAQGCSKTVTFQTSVTCEICGGAGVPPGTTPETC 773
+R G D L L+ EA G K + C C G+G PGT P TC
Sbjct: 499 NRPMQGDDESYNLVLNFKEAVFGVEKEIEITRLEGCNTCDGSGAKPGTKPTTC 657
Score = 23.1 bits (44), Expect(4) = 4e-021
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2 / +1
Query: 715 STCTKCGGSGKTV 677
+TC CGG G+ V
Sbjct: 649 TTCKTCGGHGQVV 687
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 746,107,009
Number of Sequences: 312970
Number of extensions: 14152138
Number of successful extensions: 143670
Number of sequences better than 1.0e-020: 15
length of database: 58,378,179
effective HSP length: 54
effective length of database: 41,477,799
effective search space used: 19370132133
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)