TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. v... 156 3e-060
gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedl... 156 1e-058
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 149 4e-053
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 144 2e-051
gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA li... 144 2e-051
gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA li... 144 2e-051
gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachi... 144 2e-051
gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA li... 144 2e-051
gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA li... 144 2e-051
gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA li... 144 8e-051
gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA li... 132 6e-048
gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Li... 126 9e-048
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 126 9e-048
gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA li... 126 9e-048
gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgar... 126 9e-048
gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA li... 126 9e-048
gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA li... 97 2e-046
gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA li... 124 1e-045
gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. v... 116 9e-045
gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare s... 121 2e-044
gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, sal... 104 5e-044
gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedl... 127 2e-043
gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA li... 115 5e-043
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 145 3e-042
gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedl... 153 2e-041
gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. v... 142 2e-040
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 144 1e-039
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 163 1e-039
gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. v... 97 7e-039
gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA li... 126 8e-038
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 156 1e-037
gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA li... 96 3e-037
gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. v... 90 7e-037
gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA li... 144 7e-037
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 139 3e-036
gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA li... 79 4e-036
gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiol... 84 2e-035
gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedl... 139 1e-032
gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedl... 134 4e-031
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 67 8e-030
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 67 8e-030
gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedl... 126 1e-029
gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedl... 125 2e-029
gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subs... 96 3e-029
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 64 7e-029
gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare s... 113 2e-028
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 60 8e-028
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 63 2e-027
gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedl... 118 3e-026
gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedl... 86 8e-025
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 63 1e-024
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 62 1e-024
gb|BQ760822.1|BQ760822 EBro03_SQ003_J06_R root, 3 week, wat... 106 1e-022
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 64 2e-022
gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedl... 105 3e-022
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 63 4e-022
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 67 4e-022
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 67 4e-022
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 67 4e-022
>gb|CB875146.1|CB875146 HX07G17w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G17
3-PRIME, mRNA sequence
Length = 606
Score = 156 bits (335), Expect(2) = 3e-060
Identities = 56/73 (76%), Positives = 66/73 (90%)
Frame = -2 / -1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTYTIIWN +++FKVDDLFIRSF RYADLPYP ++PM++HATLWDGSYWAT+KG+V +D
Sbjct: 597 HTYTIIWNHKNVIFKVDDLFIRSFTRYADLPYPGAKPMSVHATLWDGSYWATQKGKVPVD 418
Query: 556 WSDAPFVVSYRSY 518
WS APFVVSYR Y
Sbjct: 417 WSGAPFVVSYRGY 379
Score = 104 bits (221), Expect(2) = 2e-036
Identities = 52/70 (74%), Positives = 55/70 (78%)
Frame = +3 / +2
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R*ETTKGA DQS TLPF VAQ*LPS SVAC+ MGL G GRSA*R+K RMKRSSTL
Sbjct: 386 R*ETTKGAPDQSTGTLPFCVAQ*LPSQSVACTDMGLAPG*GRSA*RVKLRMKRSSTLKMT 565
Query: 705 LVGFQMMV*V 734
+ FQMMV*V
Sbjct: 566 FLWFQMMV*V 595
Score = 101 bits (216), Expect(2) = 1e-031
Identities = 47/63 (74%), Positives = 48/63 (76%)
Frame = +2 / +1
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D ALL GPVAAVP+RGV HG GARV QVGVA E ADEEVV LE D VPDDGVG
Sbjct: 415 PVDGDLALLRGPVAAVPERGVHGHGLGARVGQVGVAREAADEEVVHLEDDVLVVPDDGVG 594
Query: 734 VCV 742
V V
Sbjct: 595 VVV 603
Score = 95.9 bits (203), Expect(2) = 3e-060
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = -2 / -1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+RQLD AE GTV WA R++MRYNYC DGWRFPQG PAEC+R
Sbjct: 312 WMDRQLDDAERGTVAWARRDYMRYNYCDDGWRFPQGFPAECSR 184
Score = 75.8 bits (159), Expect(3) = 2e-022
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = -1 / -3
Query: 698 VQGRRPLHPLLQALRRPAVPELQAHDAARHAVGRQLLGHREG 573
+QG RPLHP L ALRRPA+P QAH ARHA+GRQLLGH EG
Sbjct: 559 LQGGRPLHPQLHALRRPALPGRQAHVRARHALGRQLLGHAEG 434
Score = 68.4 bits (143), Expect(2) = 2e-036
Identities = 31/44 (70%), Positives = 34/44 (77%)
Frame = +2 / +1
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S AGALGGE+LRE P I+AVVVAH VA P DGA LG V+L VH
Sbjct: 178 SAAGALGGEALRESPAIVAVVVAHVVAPGPGDGAALGVVELAVH 309
Score = 54.7 bits (113), Expect(2) = 1e-031
Identities = 28/50 (56%), Positives = 30/50 (60%)
Frame = +3 / +2
Query: 300 KTKN*PADAYQWRAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSS 449
+ + * Q R HSAG PCGN PS Q*L*RM R A TVP SA SS
Sbjct: 149 RRRE*SQSVVQPREHSAGKPCGNRQPSSQ*L*RM*SRLAQATVPRSASSS 298
Score = 37.7 bits (76), Expect(3) = 2e-022
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -1 / -3
Query: 464 VDEQAA*QRRVGHRQVGGAQLHALQLLPGW 375
+D A +RR HR++G A+LHALQLL W
Sbjct: 313 LDGPPARRRRARHRRLGQARLHALQLLRRW 224
Score = 29.5 bits (58), Expect(3) = 2e-022
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3 / -2
Query: 378 MGGGSRKDSPPSAPATD 328
M G SR+ SPPSAPA +
Sbjct: 227 MAGDSRRASPPSAPAAE 177
>gb|BF257690.2|BF257690 HVSMEf0013J17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013J17f, mRNA sequence
Length = 542
Score = 156 bits (335), Expect(2) = 1e-058
Identities = 56/73 (76%), Positives = 66/73 (90%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTYTIIWN +++FKVDDLFIRSF RYADLPYP ++PM++HATLWDGSYWAT+KG+V +D
Sbjct: 30 HTYTIIWNHKNVIFKVDDLFIRSFTRYADLPYPGAKPMSVHATLWDGSYWATQKGKVPVD 209
Query: 556 WSDAPFVVSYRSY 518
WS APFVVSYR Y
Sbjct: 210 WSGAPFVVSYRGY 248
Score = 104 bits (222), Expect(2) = 9e-036
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 501 TQXXXXXXR*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMK 680
T R*ETTKGA DQS TLPF VAQ*LPS SVAC+ MGL G GRSA*R+K RMK
Sbjct: 265 THASSEYPR*ETTKGAPDQSTGTLPFCVAQ*LPSQSVACTDMGLAPG*GRSA*RVKLRMK 86
Query: 681 RSSTLNRMLVGFQMMV*V 734
RSSTL + FQMMV*V
Sbjct: 85 RSSTLKMTFLWFQMMV*V 32
Score = 101 bits (216), Expect(2) = 2e-031
Identities = 47/63 (74%), Positives = 48/63 (76%)
Frame = +2 / -1
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D ALL GPVAAVP+RGV HG GARV QVGVA E ADEEVV LE D VPDDGVG
Sbjct: 212 PVDGDLALLRGPVAAVPERGVHGHGLGARVGQVGVAREAADEEVVHLEDDVLVVPDDGVG 33
Query: 734 VCV 742
V V
Sbjct: 32 VVV 24
Score = 90.4 bits (191), Expect(2) = 1e-058
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+RQLD AE GTV WA R++MRYNY DGWRFPQG PAEC+R
Sbjct: 315 WMDRQLDDAERGTVDWARRDYMRYNYWDDGWRFPQGFPAECSR 443
Score = 75.8 bits (159), Expect(3) = 1e-022
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = -1 / +2
Query: 698 VQGRRPLHPLLQALRRPAVPELQAHDAARHAVGRQLLGHREG 573
+QG RPLHP L ALRRPA+P QAH ARHA+GRQLLGH EG
Sbjct: 68 LQGGRPLHPQLHALRRPALPGRQAHVRARHALGRQLLGHAEG 193
Score = 65.7 bits (137), Expect(2) = 9e-036
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = +2 / -1
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S AGALGGE+LRE P I+ VVVAH VA P DGA LG V+L VH
Sbjct: 449 SAAGALGGEALRESPAIVPVVVAHVVAPGPVDGAALGVVELXVH 318
Score = 53.8 bits (111), Expect(2) = 2e-031
Identities = 27/40 (67%), Positives = 27/40 (67%)
Frame = +3 / -2
Query: 330 QWRAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSS 449
Q R HSAG PCGN PS Q*L*RM R A TVP SA SS
Sbjct: 448 QPREHSAGKPCGNRQPSSQ*L*RM*SRLAQSTVPRSASSS 329
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -1 / +2
Query: 464 VDEQAA*QRRVGHRQVGGAQLHALQLLPGW 375
+D A +RR HR++G A+LHALQLL W
Sbjct: 314 LDGPXARRRRARHRRLGQARLHALQLLGRW 403
Score = 29.5 bits (58), Expect(3) = 1e-022
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3 / +1
Query: 378 MGGGSRKDSPPSAPATD 328
M G SR+ SPPSAPA +
Sbjct: 400 MAGDSRRASPPSAPAAE 450
>gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001K09f, mRNA sequence
Length = 606
Score = 149 bits (319), Expect(2) = 4e-053
Identities = 53/73 (72%), Positives = 63/73 (86%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTYTIIWN +++FKVDDLF+R F R+ADLPYP ++PM +HATLWDGSYWAT+ GRV +D
Sbjct: 194 HTYTIIWNDRNVIFKVDDLFLRCFTRHADLPYPGAKPMAVHATLWDGSYWATQHGRVKVD 373
Query: 556 WSDAPFVVSYRSY 518
WS APFVVSYR Y
Sbjct: 374 WSAAPFVVSYRGY 412
Score = 99.6 bits (211), Expect(2) = 2e-028
Identities = 51/78 (65%), Positives = 55/78 (70%)
Frame = +3 / -1
Query: 501 TQXXXXXXR*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMK 680
TQ R*ETTKGA+DQS TLP VAQ*LPS SVAC+ MGL G GRSA R+K+R K
Sbjct: 429 TQASAE*PR*ETTKGAADQSTFTLPCCVAQ*LPSQSVACTAMGLAPG*GRSAWRVKQRRK 250
Query: 681 RSSTLNRMLVGFQMMV*V 734
RSSTL FQMMV*V
Sbjct: 249 RSSTLKMTFRSFQMMV*V 196
Score = 93.2 bits (197), Expect(2) = 1e-022
Identities = 42/61 (68%), Positives = 45/61 (73%)
Frame = +2 / -3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PV P +L PVAAVP+RGV RHG GARV QVGVA E A+EEVV LE D VPDDGVG
Sbjct: 376 PVHLHPPVLRRPVAAVPERGVHRHGLGARVGQVGVAREAAEEEVVHLEDDVPVVPDDGVG 197
Query: 734 V 736
V
Sbjct: 196 V 194
Score = 79.4 bits (167), Expect(2) = 4e-053
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECA 338
WM R+ +AE GT+ WA RN+M Y+YC DGWRFP+G PAEC+
Sbjct: 479 WMTRRPSAAERGTLDWARRNYMHYDYCADGWRFPKGFPAECS 604
Score = 46.4 bits (95), Expect(2) = 2e-028
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +2 / -3
Query: 338 GALGGESLREPPPILAVVVAHEVALRPPDGAPLG 439
GALGGE L EPP + AVVV H V P +GA LG
Sbjct: 604 GALGGEPLGEPPAVGAVVVVHVVPPGPVEGAALG 503
Score = 35.0 bits (70), Expect(2) = 1e-022
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = +3 / -1
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSA 440
R HSAG+P GN PS Q* * M A VP SA
Sbjct: 606 REHSAGNPLGNRQPSAQ*S*CM*FLLAQSRVPRSA 502
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(PM5)
Length = 1188
Score = 144 bits (308), Expect(2) = 2e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 500 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 679
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 680 WTQAPFVVNYRGY 718
Score = 81.3 bits (171), Expect(2) = 7e-024
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / -3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 682 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 503
Query: 734 V 736
V
Sbjct: 502 V 500
Score = 79.0 bits (166), Expect(2) = 2e-051
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 779 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 907
Score = 77.6 bits (163), Expect(2) = 9e-021
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = +3 / -1
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 711 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 532
Query: 705 LVGFQMMV*V 734
+GFQ ++*V
Sbjct: 531 FLGFQTIL*V 502
Score = 49.2 bits (101), Expect(2) = 7e-024
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +2 / -3
Query: 335 AGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
AGALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 907 AGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 782
Score = 42.3 bits (86), Expect(2) = 9e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / -1
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
R HSAG P G PS Q* * M L SA TVP + SS + I
Sbjct: 906 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLI 781
>gb|AV927496.1|AV927496 AV927496 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 3', mRNA sequence
Length = 706
Score = 144 bits (308), Expect(2) = 2e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / -3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 686 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 507
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 506 WTQAPFVVNYRGY 468
Score = 81.3 bits (171), Expect(2) = 7e-024
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / +3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 504 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 683
Query: 734 V 736
V
Sbjct: 684 V 686
Score = 79.0 bits (166), Expect(2) = 2e-051
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 407 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 279
Score = 77.6 bits (163), Expect(2) = 9e-021
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = +3 / +1
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 475 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 654
Query: 705 LVGFQMMV*V 734
+GFQ ++*V
Sbjct: 655 FLGFQTIL*V 684
Score = 49.2 bits (101), Expect(2) = 7e-024
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +2 / +3
Query: 335 AGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
AGALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 279 AGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 404
Score = 42.3 bits (86), Expect(2) = 9e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / +1
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
R HSAG P G PS Q* * M L SA TVP + SS + I
Sbjct: 280 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLI 405
>gb|AV930767.1|AV930767 AV930767 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25c17 3', mRNA sequence
Length = 680
Score = 144 bits (308), Expect(2) = 2e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / -3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 660 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 481
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 480 WTQAPFVVNYRGY 442
Score = 81.3 bits (171), Expect(2) = 7e-024
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / +1
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 478 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 657
Query: 734 V 736
V
Sbjct: 658 V 660
Score = 79.0 bits (166), Expect(2) = 2e-051
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 381 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 253
Score = 77.6 bits (163), Expect(2) = 9e-021
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = +3 / +2
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 449 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 628
Query: 705 LVGFQMMV*V 734
+GFQ ++*V
Sbjct: 629 FLGFQTIL*V 658
Score = 49.2 bits (101), Expect(2) = 7e-024
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +2 / +1
Query: 335 AGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
AGALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 253 AGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 378
Score = 42.3 bits (86), Expect(2) = 9e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / +2
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
R HSAG P G PS Q* * M L SA TVP + SS + I
Sbjct: 254 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLI 379
>gb|BI959504.1|BI959504 HVSMEn0019O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019O24f, mRNA sequence
Length = 672
Score = 144 bits (308), Expect(2) = 2e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 197 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 376
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 377 WTQAPFVVNYRGY 415
Score = 81.3 bits (171), Expect(2) = 4e-024
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / -3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 379 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 200
Query: 734 V 736
V
Sbjct: 199 V 197
Score = 79.0 bits (166), Expect(2) = 2e-051
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 476 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 604
Score = 77.6 bits (163), Expect(2) = 9e-021
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = +3 / -1
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 408 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 229
Query: 705 LVGFQMMV*V 734
+GFQ ++*V
Sbjct: 228 FLGFQTIL*V 199
Score = 50.1 bits (103), Expect(2) = 4e-024
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2 / -3
Query: 272 TRRKKKNTQQNKELTGGRISVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKL 451
T+ ++ +E + AGALGGE++ E P + AVVV H +AL P DGA V+L
Sbjct: 667 TKHTTDEEERKQEESDDGSVAAGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVEL 488
Query: 452 PVH 460
H
Sbjct: 487 RAH 479
Score = 42.3 bits (86), Expect(2) = 9e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / -1
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
R HSAG P G PS Q* * M L SA TVP + SS + I
Sbjct: 603 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLI 478
>gb|BJ447562.1|BJ447562 BJ447562 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16e21 5', mRNA sequence
Length = 648
Score = 144 bits (308), Expect(2) = 2e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 133 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 312
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 313 WTQAPFVVNYRGY 351
Score = 81.3 bits (171), Expect(2) = 7e-024
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / -1
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 315 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 136
Query: 734 V 736
V
Sbjct: 135 V 133
Score = 79.0 bits (166), Expect(2) = 2e-051
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 412 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 540
Score = 77.6 bits (163), Expect(2) = 9e-021
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = +3 / -2
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 344 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 165
Query: 705 LVGFQMMV*V 734
+GFQ ++*V
Sbjct: 164 FLGFQTIL*V 135
Score = 49.2 bits (101), Expect(2) = 7e-024
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +2 / -1
Query: 335 AGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
AGALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 540 AGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 415
Score = 42.3 bits (86), Expect(2) = 9e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / -2
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
R HSAG P G PS Q* * M L SA TVP + SS + I
Sbjct: 539 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLI 414
>gb|AV922775.1|AV922775 AV922775 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2f08 5', mRNA sequence
Length = 627
Score = 144 bits (308), Expect(2) = 2e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 61 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 240
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 241 WTQAPFVVNYRGY 279
Score = 81.3 bits (171), Expect(2) = 7e-024
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / -1
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 243 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 64
Query: 734 V 736
V
Sbjct: 63 V 61
Score = 79.0 bits (166), Expect(2) = 2e-051
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 340 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 468
Score = 77.6 bits (163), Expect(2) = 9e-021
Identities = 41/70 (58%), Positives = 49/70 (70%)
Frame = +3 / -2
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 272 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 93
Query: 705 LVGFQMMV*V 734
+GFQ ++*V
Sbjct: 92 FLGFQTIL*V 63
Score = 49.2 bits (101), Expect(2) = 7e-024
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +2 / -1
Query: 335 AGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
AGALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 468 AGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 343
Score = 42.3 bits (86), Expect(2) = 9e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / -2
Query: 336 RAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
R HSAG P G PS Q* * M L SA TVP + SS + I
Sbjct: 467 REHSAGKPLGKRQPSVQ*S*DMYLLSAQATVPRALASSSVLI 342
>gb|BJ446906.1|BJ446906 BJ446906 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e21 5', mRNA sequence
Length = 547
Score = 144 bits (308), Expect(2) = 8e-051
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 143 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 322
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 323 WTQAPFVVNYRGY 361
Score = 81.3 bits (171), Expect(2) = 2e-023
Identities = 39/61 (63%), Positives = 41/61 (67%)
Frame = +2 / -1
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+ GGPVAAVP+RGV RH ARVRQV V LE VV LE D VPDD VG
Sbjct: 325 PVDLDVAVAGGPVAAVPERGVHRHRLAARVRQVVVLLERPHRHVVHLEYDVLGVPDDLVG 146
Query: 734 V 736
V
Sbjct: 145 V 143
Score = 76.7 bits (161), Expect(2) = 8e-051
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECA 338
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+
Sbjct: 422 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECS 547
Score = 47.3 bits (97), Expect(2) = 2e-023
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2 / -1
Query: 338 GALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
GALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 547 GALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 425
>gb|AV927618.1|AV927618 AV927618 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2n22 3', mRNA sequence
Length = 651
Score = 132 bits (282), Expect(2) = 6e-048
Identities = 47/67 (70%), Positives = 58/67 (86%)
Frame = -2 / -1
Query: 718 WNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPF 539
WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V IDW+ APF
Sbjct: 651 WNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPF 472
Query: 538 VVSYRSY 518
VV+YR Y
Sbjct: 471 VVNYRGY 451
Score = 79.0 bits (166), Expect(2) = 6e-048
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 390 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 262
Score = 72.5 bits (152), Expect(2) = 3e-021
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = +3 / +2
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R* TTKGA QS+ T P+ VAQ*LPS SVAC+V+G LGYGRS+ L SST N M
Sbjct: 458 R*LTTKGAWVQSILTSPWRVAQ*LPSQSVACTVIGWLLGYGRSSYFLNVLTGTSSTWNMM 637
Query: 705 LVGF 716
+GF
Sbjct: 638 FLGF 649
Score = 49.2 bits (101), Expect(2) = 3e-021
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +2 / +1
Query: 335 AGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
AGALGGE++ E P + AVVV H +AL P DGA V+L H
Sbjct: 262 AGALGGEAVGEAPAVGAVVVGHVLALGPGDGAEGFGVELRAH 387
>gb|BE422291.1|BE422291 HWM022cE.11r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cE.11, mRNA sequence
Length = 1248
Score = 126 bits (270), Expect(2) = 9e-048
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I
Sbjct: 165 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIH 344
Query: 556 WSDAPFVVSYRSYY 515
W PFVV Y+ Y+
Sbjct: 345 WRHDPFVVPYQGYH 386
Score = 84.0 bits (177), Expect(2) = 9e-048
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 450 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 578
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +2 / -2
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+L PVAAVPQR V RH P R RQ V LEG V LE D VP D VG
Sbjct: 347 PVDLDGAVLRRPVAAVPQRRVHRHRPRRRERQAVVLLEGPHRHAVHLEYDVLWVPCDLVG 168
Query: 734 V 736
V
Sbjct: 167 V 165
Score = 52.8 bits (109), Expect(2) = 5e-021
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +2 / -2
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S+A AL GE+L E P + AVVV VAL P DGA L V+L VH
Sbjct: 584 SLASALAGEALGEAPSVGAVVVGEAVALGPRDGAELAVVELAVH 453
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
Length = 1110
Score = 126 bits (270), Expect(2) = 9e-048
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I
Sbjct: 476 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIH 655
Query: 556 WSDAPFVVSYRSYY 515
W PFVV Y+ Y+
Sbjct: 656 WRHDPFVVPYQGYH 697
Score = 84.0 bits (177), Expect(2) = 9e-048
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 761 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 889
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +2 / -3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+L PVAAVPQR V RH P R RQ V LEG V LE D VP D VG
Sbjct: 658 PVDLDGAVLRRPVAAVPQRRVHRHRPRRRERQAVVLLEGPHRHAVHLEYDVLWVPCDLVG 479
Query: 734 V 736
V
Sbjct: 478 V 476
Score = 52.8 bits (109), Expect(2) = 5e-021
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +2 / -3
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S+A AL GE+L E P + AVVV VAL P DGA L V+L VH
Sbjct: 895 SLASALAGEALGEAPSVGAVVVGEAVALGPRDGAELAVVELAVH 764
>gb|AV921125.1|AV921125 AV921125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1b10 3', mRNA sequence
Length = 664
Score = 126 bits (270), Expect(2) = 9e-048
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -2 / -3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I
Sbjct: 605 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIH 426
Query: 556 WSDAPFVVSYRSYY 515
W PFVV Y+ Y+
Sbjct: 425 WRHDPFVVPYQGYH 384
Score = 84.0 bits (177), Expect(2) = 9e-048
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / -3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 320 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 192
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +2 / +3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+L PVAAVPQR V RH P R RQ V LEG V LE D VP D VG
Sbjct: 423 PVDLDGAVLRRPVAAVPQRRVHRHRPRRRERQAVVLLEGPHRHAVHLEYDVLWVPCDLVG 602
Query: 734 V 736
V
Sbjct: 603 V 605
Score = 52.8 bits (109), Expect(2) = 5e-021
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +2 / +3
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S+A AL GE+L E P + AVVV VAL P DGA L V+L VH
Sbjct: 186 SLASALAGEALGEAPSVGAVVVGEAVALGPRDGAELAVVELAVH 317
>gb|CK122280.1|CK122280 BES1824102l14 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L142 5-PRIME, mRNA sequence
Length = 632
Score = 126 bits (270), Expect(2) = 9e-048
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I
Sbjct: 50 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIH 229
Query: 556 WSDAPFVVSYRSYY 515
W PFVV Y+ Y+
Sbjct: 230 WRHDPFVVPYQGYH 271
Score = 84.0 bits (177), Expect(2) = 9e-048
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 335 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 463
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +2 / -2
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+L PVAAVPQR V RH P R RQ V LEG V LE D VP D VG
Sbjct: 232 PVDLDGAVLRRPVAAVPQRRVHRHRPRRRERQAVVLLEGPHRHAVHLEYDVLWVPCDLVG 53
Query: 734 V 736
V
Sbjct: 52 V 50
Score = 52.8 bits (109), Expect(2) = 5e-021
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +2 / -2
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S+A AL GE+L E P + AVVV VAL P DGA L V+L VH
Sbjct: 469 SLASALAGEALGEAPSVGAVVVGEAVALGPRDGAELAVVELAVH 338
>gb|AV928124.1|AV928124 AV928124 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 3', mRNA sequence
Length = 485
Score = 126 bits (270), Expect(2) = 9e-048
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -2 / -1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I
Sbjct: 434 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIH 255
Query: 556 WSDAPFVVSYRSYY 515
W PFVV Y+ Y+
Sbjct: 254 WRHDPFVVPYQGYH 213
Score = 84.0 bits (177), Expect(2) = 9e-048
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / -1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 149 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 21
Score = 68.0 bits (142), Expect(2) = 5e-021
Identities = 35/61 (57%), Positives = 36/61 (59%)
Frame = +2 / +3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D A+L PVAAVPQR V RH P R RQ V LEG V LE D VP D VG
Sbjct: 252 PVDLDGAVLRRPVAAVPQRRVHRHRPRRRERQAVVLLEGPHRHAVHLEYDVLWVPCDLVG 431
Query: 734 V 736
V
Sbjct: 432 V 434
Score = 52.8 bits (109), Expect(2) = 5e-021
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +2 / +3
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
S+A AL GE+L E P + AVVV VAL P DGA L V+L VH
Sbjct: 15 SLASALAGEALGEAPSVGAVVVGEAVALGPRDGAELAVVELAVH 146
>gb|AV930447.1|AV930447 AV930447 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22j07 3', mRNA sequence
Length = 650
Score = 96.8 bits (205), Expect(3) = 2e-046
Identities = 33/47 (70%), Positives = 43/47 (91%)
Frame = -2 / -1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDG 596
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDG
Sbjct: 647 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDG 507
Score = 79.0 bits (166), Expect(3) = 2e-046
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 367 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 239
Score = 48.3 bits (99), Expect(3) = 2e-046
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -2 / -2
Query: 592 YWATEKGRVGIDWSDAPFVVSYRSY 518
YWAT G V IDW+ APFVV+YR Y
Sbjct: 502 YWATRHGDVKIDWTQAPFVVNYRGY 428
>gb|BJ446899.1|BJ446899 BJ446899 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15e10 5', mRNA sequence
Length = 652
Score = 124 bits (266), Expect(2) = 1e-045
Identities = 45/65 (69%), Positives = 56/65 (86%)
Frame = -2 / +2
Query: 712 PTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVV 533
P +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V IDW+ APFVV
Sbjct: 14 PXNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVV 193
Query: 532 SYRSY 518
+YR Y
Sbjct: 194 NYRGY 208
Score = 79.0 bits (166), Expect(2) = 1e-045
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 269 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 397
>gb|CA005380.1|CA005380 HU10N24u HU Hordeum vulgare subsp. vulgare cDNA clone HU10N24
3-PRIME, mRNA sequence
Length = 551
Score = 116 bits (248), Expect(2) = 9e-045
Identities = 41/68 (60%), Positives = 54/68 (79%)
Frame = -2 / -2
Query: 718 WNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPF 539
WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I W PF
Sbjct: 547 WNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPF 368
Query: 538 VVSYRSYY 515
VV Y+ Y+
Sbjct: 367 VVPYQGYH 344
Score = 84.0 bits (177), Expect(2) = 9e-045
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / -2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 280 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 152
>gb|BM816097.1|BM816097 HC111H09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111H09_T3.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 918
Score = 121 bits (258), Expect(4) = 2e-044
Identities = 45/56 (80%), Positives = 50/56 (89%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGR 569
HTYTIIWNP +ILFKVD+LFIRSFKR+A +PY S+PM LHATLWDGSYWATEK R
Sbjct: 526 HTYTIIWNPENILFKVDNLFIRSFKRFAGIPYAGSKPMRLHATLWDGSYWATEKAR 693
Score = 95.9 bits (203), Expect(3) = 4e-027
Identities = 43/58 (74%), Positives = 44/58 (75%)
Frame = +2 / -1
Query: 569 PALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVGVCV 742
P LLG PVAAVPQRGVQ HG GA V G ALEG DEEVV LE+D RVPDDGVGV V
Sbjct: 693 PCLLGRPVAAVPQRGVQPHGLGASVGDAGEALEGPDEEVVHLEEDVLRVPDDGVGVVV 520
Score = 46.4 bits (95), Expect(4) = 2e-044
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAERN 404
WMNRQLD +EWGT +WAE+N
Sbjct: 795 WMNRQLDGSEWGTRQWAEQN 854
Score = 38.2 bits (77), Expect(4) = 2e-044
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = -2 / +3
Query: 577 KGRVGIDWSDAPFVVSYRSYY 515
+G+V IDWS+APF V Y++YY
Sbjct: 684 EGKVPIDWSNAPFNVLYKNYY 746
Score = 36.3 bits (73), Expect(3) = 4e-027
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2 / -2
Query: 404 VALRPPDGAPLGAVKLPVH 460
+ LRP GAPLGAV+LPVH
Sbjct: 854 ILLRPLTGAPLGAVELPVH 798
Score = 29.9 bits (59), Expect(4) = 2e-044
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 391 NYCQDGWRFPQGLPAECA 338
+YC DG++ P G PA+ A
Sbjct: 865 HYCADGYKVPTGXPADAA 918
Score = 26.7 bits (52), Expect(3) = 4e-027
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 531 ETTKGASDQSMPTLP 575
+T KGA DQSM TLP
Sbjct: 730 KTLKGALDQSMGTLP 686
>gb|BI777390.2|BI777390 EBro04_SQ001_B07_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_B07 5', mRNA sequence
Length = 465
Score = 104 bits (221), Expect(3) = 5e-044
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECARH* 329
WMNRQLD +EWGTV+WAE+N+MRYNYC DG+RFPQG PAEC+R+*
Sbjct: 170 WMNRQLDGSEWGTVKWAEQNYMRYNYCADGYRFPQGFPAECSRY* 304
Score = 86.3 bits (182), Expect(3) = 5e-044
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = -2 / +2
Query: 634 SRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSYY 515
S+PM LHATLWDGSYWATEKG+V IDWS+APF V Y++YY
Sbjct: 2 SKPMRLHATLWDGSYWATEKGKVPIDWSNAPFNVLYKNYY 121
Score = 73.9 bits (155), Expect(4) = 1e-031
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = +2 / -3
Query: 329 SVAGALGGESLREPPPILAVVVAHEVALRPPDGAPLGAVKLPVH 460
SVA ALGGE L EP I AVVVAH + LRP DGAPLGAV+LPVH
Sbjct: 304 SVAAALGGEPLWEPVAICAVVVAHVILLRPLDGAPLGAVELPVH 173
Score = 73.5 bits (154), Expect(3) = 9e-024
Identities = 35/49 (71%), Positives = 36/49 (73%)
Frame = +3 / -1
Query: 315 PADAYQWRAHSAGSPCGNLHPSWQ*L*RMKLRSAHLTVPHSALSSCLFI 461
P Q R HSAG+PCGNL PS Q*L*RM SAHLTVPHS SSCLFI
Sbjct: 318 PGRLDQ*RLHSAGNPCGNL*PSAQ*L*RM*FCSAHLTVPHSEPSSCLFI 172
Score = 69.3 bits (145), Expect(4) = 1e-031
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +3 / -1
Query: 531 ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLE 635
+T KGA DQSM TLPFSVAQ*LPSHSVACS+MGLE
Sbjct: 105 KTLKGALDQSMGTLPFSVAQ*LPSHSVACSLMGLE 1
Score = 56.5 bits (117), Expect(4) = 7e-021
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -1 / +1
Query: 464 VDEQAA*QRRVGHRQVGGAQLHALQLLPGW 375
VDEQAA + RVGHRQVGGA+LHALQLL W
Sbjct: 169 VDEQAARRLRVGHRQVGGAKLHALQLLRRW 258
Score = 51.5 bits (106), Expect(3) = 9e-024
Identities = 22/27 (81%), Positives = 22/27 (81%)
Frame = +2 / -3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPG 634
PVD D ALLG PVAAVPQRGVQ HG G
Sbjct: 82 PVDGDLALLGRPVAAVPQRGVQPHGLG 2
Score = 47.3 bits (97), Expect(4) = 7e-021
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -1 / +1
Query: 635 LQAHDAARHAVGRQLLGHREG 573
LQAH+AARHAVGRQLLG REG
Sbjct: 1 LQAHEAARHAVGRQLLGDREG 63
Score = 27.6 bits (54), Expect(4) = 7e-021
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3 / +3
Query: 378 MGGGSRKDSPPSAPATD 328
M GS + SPPSA ATD
Sbjct: 255 MATGSHRGSPPSAAATD 305
Score = 25.8 bits (50), Expect(3) = 5e-044
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 284 FFYGYMILALLCGF 243
FF YMIL LLC F
Sbjct: 342 FFIQYMILVLLCEF 383
Score = 24.9 bits (48), Expect(4) = 1e-031
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2 / -1
Query: 161 KIHA*FRKS*VYNNRPHVAS 220
K+HA F NNRPH AS
Sbjct: 462 KLHASFL*EKCTNNRPHAAS 403
Score = 23.5 bits (45), Expect(4) = 1e-031
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 242 QIHKEEQESYT 274
+IHKEEQES T
Sbjct: 384 KIHKEEQESCT 352
Score = 23.1 bits (44), Expect(4) = 7e-021
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1 / +1
Query: 284 FFYGYMILALLCGFVIKKQP 225
F Y L FVIKKQP
Sbjct: 343 FLYST*FLFFFVNFVIKKQP 402
Score = 22.6 bits (43), Expect(3) = 9e-024
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3 / -2
Query: 243 KSTKKSKNHIPVEK 284
K TKK+KNH+ +K
Sbjct: 383 KFTKKNKNHVLYKK 342
>gb|BF255206.2|BF255206 HVSMEf0006D21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006D21f, mRNA sequence
Length = 584
Score = 127 bits (271), Expect(2) = 2e-043
Identities = 46/66 (69%), Positives = 57/66 (86%)
Frame = -2 / +2
Query: 715 NPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFV 536
NP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V IDW+ APFV
Sbjct: 2 NPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFV 181
Query: 535 VSYRSY 518
V+YR Y
Sbjct: 182 VNYRGY 199
Score = 68.9 bits (144), Expect(2) = 2e-043
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = -2 / +2
Query: 460 MNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
M+ +LD+ GTV AE +M Y+YC DGWRFP GLPAEC+R
Sbjct: 263 MSTELDAKALGTVA*AESKYMSYDYCTDGWRFPNGLPAECSR 388
>gb|BJ467570.1|BJ467570 BJ467570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25n11 3', mRNA sequence
Length = 632
Score = 115 bits (246), Expect(2) = 5e-043
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = -2 / -3
Query: 706 SILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSY 527
+I+F+VD + +R+F +Y DLPYPSS+PMT+HATLWDGSYWAT G V IDW+ APFVV+Y
Sbjct: 627 NIIFQVDXVPVRTFXKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNY 448
Query: 526 RSY 518
R Y
Sbjct: 447 RGY 439
Score = 79.0 bits (166), Expect(2) = 5e-043
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -3
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 378 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 250
>gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_M15 5', mRNA sequence
Length = 383
Score = 145 bits (312), Expect(2) = 3e-042
Identities = 52/73 (71%), Positives = 63/73 (86%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
H YTIIW+ +I+FKVDDLF+R F R+ADLPYP ++PM +HATLWDGSYWAT++GRV +D
Sbjct: 14 HAYTIIWHDRNIIFKVDDLFLRCFTRHADLPYPGAKPMAVHATLWDGSYWATQQGRVKVD 193
Query: 556 WSDAPFVVSYRSY 518
WS APFVVSYR Y
Sbjct: 194 WSAAPFVVSYRGY 232
Score = 46.4 bits (95), Expect(2) = 3e-042
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYC 383
WM R+ ++AE GT+ WA RN+M Y+YC
Sbjct: 299 WMTRRPNAAERGTLDWARRNYMHYDYC 379
>gb|BF256444.2|BF256444 HVSMEf0009P18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009P18f, mRNA sequence
Length = 837
Score = 153 bits (329), Expect(2) = 2e-041
Identities = 57/74 (77%), Positives = 66/74 (89%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTYTIIWNP +ILFKVD+LFIRSFKR+A +PY S+PM LHATLWDGSYWATEKG+V ID
Sbjct: 33 HTYTIIWNPENILFKVDNLFIRSFKRFAGIPYAGSKPMRLHATLWDGSYWATEKGKVPID 212
Query: 556 WSDAPFVVSYRSYY 515
WS+APF V Y++YY
Sbjct: 213 WSNAPFNVLYKNYY 254
Score = 109 bits (233), Expect(2) = 2e-026
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = +3 / -3
Query: 531 ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRMLV 710
+T KGA DQSM TLPFSVAQ*LPSHSVACS+MGLE G A RLK+RMKR STL RM
Sbjct: 238 KTLKGALDQSMGTLPFSVAQ*LPSHSVACSLMGLEPA*GMPAKRLKDRMKRLSTLKRMFS 59
Query: 711 GFQMMV*V 734
GFQMMV*V
Sbjct: 58 GFQMMV*V 35
Score = 103 bits (220), Expect(2) = 4e-024
Identities = 47/63 (74%), Positives = 48/63 (76%)
Frame = +2 / -2
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D ALLG PVAAVPQRGVQ HG GA V G ALEG DEEVV LE+D RVPDDGVG
Sbjct: 215 PVDGDLALLGRPVAAVPQRGVQPHGLGASVGDAGEALEGPDEEVVHLEEDVLRVPDDGVG 36
Query: 734 VCV 742
V V
Sbjct: 35 VVV 27
Score = 35.4 bits (71), Expect(2) = 2e-041
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAER 407
WMNRQ+D +EWGT ER
Sbjct: 303 WMNRQVDGSEWGTNERTER 359
Score = 29.5 bits (58), Expect(2) = 2e-026
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2 / -2
Query: 407 ALRPPDGAPLGAVKLPVH 460
A RP GAP G V LPVH
Sbjct: 359 AFRPFIGAPFGTVDLPVH 306
Score = 27.6 bits (54), Expect(2) = 4e-024
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3 / -3
Query: 405 LRSAHLTVPHSALSSCLFI 461
LRS VPHS S+CLFI
Sbjct: 361 LRSVLSLVPHSEPSTCLFI 305
>gb|CA023772.1|CA023772 HZ47F20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47F20
5-PRIME, mRNA sequence
Length = 412
Score = 142 bits (305), Expect(2) = 2e-040
Identities = 50/73 (68%), Positives = 63/73 (86%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+F++Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 49 HTYKIVWNPKNIIFQVDDVPVRTFRKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 228
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 229 WTQAPFVVNYRGY 267
Score = 43.7 bits (89), Expect(2) = 2e-040
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYC 383
WM+ +LD+ GTV WAE +M Y+YC
Sbjct: 328 WMSTELDAKALGTVAWAESKYMSYDYC 408
>gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ002_F18 5', mRNA sequence
Length = 622
Score = 144 bits (308), Expect(2) = 1e-039
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 265 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 444
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 445 WTQAPFVVNYRGY 483
Score = 39.6 bits (80), Expect(2) = 1e-039
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNY 386
WM+ +LD+ GTV WAE +M Y+Y
Sbjct: 544 WMSTELDAKALGTVAWAESKYMSYDY 621
>gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J09 5', mRNA sequence
Length = 729
Score = 163 bits (350), Expect = 1e-039
Identities = 60/74 (81%), Positives = 70/74 (94%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTYTIIWNP +ILFKVD+LFIRSFKR+A LPYP+S+PM LHATLWDGSYWATEKG++ I+
Sbjct: 498 HTYTIIWNPENILFKVDNLFIRSFKRFAGLPYPTSKPMKLHATLWDGSYWATEKGKIPIN 677
Query: 556 WSDAPFVVSYRSYY 515
WS+APFVVSYR+YY
Sbjct: 678 WSNAPFVVSYRNYY 719
Score = 110 bits (234), Expect = 1e-023
Identities = 53/70 (75%), Positives = 56/70 (80%)
Frame = +3 / -3
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R*ETT GA DQ + LPFSVAQ*LPS SVACS MGLE+G GR A RLK+RMKR STL RM
Sbjct: 709 R*ETTNGALDQLIGILPFSVAQ*LPSQSVACSFMGLEVG*GRPAKRLKDRMKRLSTLKRM 530
Query: 705 LVGFQMMV*V 734
GFQMMV*V
Sbjct: 529 FSGFQMMV*V 500
Score = 107 bits (229), Expect = 6e-023
Identities = 47/63 (74%), Positives = 51/63 (80%)
Frame = +2 / -2
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D ALLG PVAAVP+RGVQ HG G RVR+ G ALEG+DEEVV LE+D RVPDDGVG
Sbjct: 680 PVDRDLALLGRPVAAVPERGVQLHGLGGRVREAGEALEGSDEEVVHLEEDVLRVPDDGVG 501
Query: 734 VCV 742
V V
Sbjct: 500 VVV 492
>gb|BU972696.1|BU972696 HB22H07r BC Hordeum vulgare subsp. vulgare cDNA clone HB22H07
5-PRIME, mRNA sequence
Length = 447
Score = 96.8 bits (205), Expect(2) = 7e-039
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = -2 / +1
Query: 676 IRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSYY 515
+R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I W PFVV Y+ Y+
Sbjct: 19 VRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYH 180
Score = 84.0 bits (177), Expect(2) = 7e-039
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 244 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 372
>gb|BJ468727.1|BJ468727 BJ468727 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a04 5', mRNA sequence
Length = 417
Score = 126 bits (270), Expect(2) = 8e-038
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I
Sbjct: 52 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIH 231
Query: 556 WSDAPFVVSYRSYY 515
W PFVV Y+ Y+
Sbjct: 232 WRHDPFVVPYQGYH 273
Score = 50.6 bits (104), Expect(2) = 8e-038
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYC 383
WM+R+LD E TV WAERN + YNYC
Sbjct: 337 WMHRELDDGELSTVAWAERNCLSYNYC 417
>gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I10
5-PRIME, mRNA sequence
Length = 518
Score = 156 bits (335), Expect = 1e-037
Identities = 56/73 (76%), Positives = 66/73 (90%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTYTIIWN +++FKVDDLFIRSF RYADLPYP ++PM++HATLWDGSYWAT+KG+V +D
Sbjct: 265 HTYTIIWNHKNVIFKVDDLFIRSFTRYADLPYPGAKPMSVHATLWDGSYWATQKGKVPVD 444
Query: 556 WSDAPFVVSYRSY 518
WS APFVVSYR Y
Sbjct: 445 WSGAPFVVSYRGY 483
Score = 104 bits (221), Expect = 8e-022
Identities = 52/70 (74%), Positives = 55/70 (78%)
Frame = +3 / -1
Query: 525 R*ETTKGASDQSMPTLPFSVAQ*LPSHSVACSVMGLELGYGRSA*RLKERMKRSSTLNRM 704
R*ETTKGA DQS TLPF VAQ*LPS SVAC+ MGL G GRSA*R+K RMKRSSTL
Sbjct: 476 R*ETTKGAPDQSTGTLPFCVAQ*LPSQSVACTDMGLAPG*GRSA*RVKLRMKRSSTLKMT 297
Query: 705 LVGFQMMV*V 734
+ FQMMV*V
Sbjct: 296 FLWFQMMV*V 267
Score = 101 bits (216), Expect = 4e-021
Identities = 47/63 (74%), Positives = 48/63 (76%)
Frame = +2 / -3
Query: 554 PVDADPALLGGPVAAVPQRGVQRHGPGARVRQVGVALEGADEEVVDLEQDAGRVPDDGVG 733
PVD D ALL GPVAAVP+RGV HG GARV QVGVA E ADEEVV LE D VPDDGVG
Sbjct: 447 PVDGDLALLRGPVAAVPERGVHGHGLGARVGQVGVAREAADEEVVHLEDDVLVVPDDGVG 268
Query: 734 VCV 742
V V
Sbjct: 267 VVV 259
>gb|AV931936.1|AV931936 AV931936 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26m16 3', mRNA sequence
Length = 546
Score = 96.4 bits (204), Expect(2) = 3e-037
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = -2 / -3
Query: 658 YADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSYY 515
Y DLPYPSS+PMT+HATLWDGSYWAT G V IDW+ APFVV+YR +
Sbjct: 544 YDDLPYPSSQPMTVHATLWDGSYWATRHGDVKIDWTQAPFVVNYRGLH 401
Score = 79.0 bits (166), Expect(2) = 3e-037
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 342 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 214
>gb|BU996830.1|BU996830 HM14O16r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O16
5-PRIME, mRNA sequence
Length = 604
Score = 90.0 bits (190), Expect(2) = 7e-037
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = -2 / +1
Query: 664 KRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSYY 515
K+Y LP+PS+RPMT+HATLWDGSYWAT+ G V I W PFVV Y+ Y+
Sbjct: 97 KKYDGLPFPSARPMTVHATLWDGSYWATQHGTVKIHWRHDPFVVPYQGYH 246
Score = 84.0 bits (177), Expect(2) = 7e-037
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 310 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 438
>gb|AV914496.1|AV914496 AV914496 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6j18 5', mRNA sequence
Length = 447
Score = 144 bits (308), Expect(2) = 7e-037
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 111 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 290
Query: 556 WSDAPFVVSYRSY 518
W+ APFVV+YR Y
Sbjct: 291 WTQAPFVVNYRGY 329
Score = 29.9 bits (59), Expect(2) = 7e-037
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / +3
Query: 463 WMNRQLDSAEWGTVRWAE 410
WM+ +LD+ GTV WAE
Sbjct: 390 WMSTELDAKALGTVAWAE 443
>gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020K16f, mRNA sequence
Length = 901
Score = 139 bits (298), Expect(2) = 3e-036
Identities = 50/73 (68%), Positives = 62/73 (84%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 501 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 680
Query: 556 WSDAPFVVSYRSY 518
W+ A FVV+YR Y
Sbjct: 681 WTQALFVVNYRGY 719
Score = 32.7 bits (65), Expect(2) = 3e-036
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2 / +1
Query: 430 GTVRWAERNFMRYNYCQDGWRFPQGLPAE 344
G V WA+ + N WRFP G PA+
Sbjct: 811 GPVAWADTSTCSTNTGPTAWRFPTGFPAD 897
>gb|AV929296.1|AV929296 AV929296 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11l14 3', mRNA sequence
Length = 631
Score = 79.0 bits (166), Expect(3) = 4e-036
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -2 / -2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+ +LD+ GTV WAE +M Y+YC DGWRFP G PAEC+R
Sbjct: 396 WMSTELDAKALGTVAWAESKYMSYDYCTDGWRFPNGFPAECSR 268
Score = 63.4 bits (132), Expect(3) = 4e-036
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = -2 / -3
Query: 688 DDLFIRSFKRYADLPYPSSRPMTLHATLWDG 596
DD+ + +FK+Y DLPYPSS+PMT+HATLWDG
Sbjct: 629 DDVPVXTFKKYDDLPYPSSQPMTVHATLWDG 537
Score = 47.3 bits (97), Expect(3) = 4e-036
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -2 / -1
Query: 595 SYWATEKGRVGIDWSDAPFVVSYRSYY 515
SYWAT G V IDW+ APFVV+YR +
Sbjct: 535 SYWATRHGDVKIDWTQAPFVVNYRGLH 455
>gb|AL500476.1|AL500476 AL500476 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M16r 3', mRNA sequence
Length = 691
Score = 84.0 bits (177), Expect(3) = 2e-035
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -2 / -1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+R+LD E TV WAERN + YNYC DGWRFP+G P EC R
Sbjct: 406 WMHRELDDGELSTVAWAERNCLSYNYCADGWRFPKGFPGECGR 278
Score = 58.3 bits (121), Expect(3) = 2e-035
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = -2 / -3
Query: 694 KVDDLFIRSFKRYADLPYPSSRPMTLHATLWDG 596
KVD + +R+FK+Y LP+ S+RPMT+HATLWDG
Sbjct: 650 KVDGVPVRTFKKYDGLPFXSARPMTVHATLWDG 552
Score = 45.1 bits (92), Expect(3) = 2e-035
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -2 / -1
Query: 598 GSYWATEKGRVGIDWSDAPFVVSYRSYY 515
GSYWAT+ G V I W PFVV Y+ Y+
Sbjct: 553 GSYWATQHGTVKIHWRHDPFVVPYQGYH 470
>gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012E18f, mRNA sequence
Length = 715
Score = 139 bits (299), Expect = 1e-032
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT +G ID
Sbjct: 503 HTYKIVWNPQNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRRGERQID 682
Query: 556 WSDAPFVVSYR 524
W+ APFVV+YR
Sbjct: 683 WTQAPFVVNYR 715
>gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009B18f, mRNA sequence
Length = 725
Score = 134 bits (288), Expect = 4e-031
Identities = 49/71 (69%), Positives = 61/71 (85%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSY AT G V ID
Sbjct: 508 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYLATRHGDVKID 687
Query: 556 WSDAPFVVSYR 524
W+ APFVV+YR
Sbjct: 688 WTQAPFVVNYR 720
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 66.6 bits (139), Expect(3) = 8e-030
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = -2 / +2
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+P S+PM L+A+LW+ WAT+ GRV DWS APFV S+R++
Sbjct: 626 FPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNF 751
Score = 57.9 bits (120), Expect(3) = 8e-030
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
W N++L + +RW +R FM YNYC D R QG+PAEC
Sbjct: 836 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 958
Score = 43.7 bits (89), Expect(3) = 8e-030
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRY 656
HTY+IIWNP ++F VD IR FK +
Sbjct: 527 HTYSIIWNPQHVIFAVDGTAIRDFKNH 607
>gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. vulgare cDNA clone HX04D09
5-PRIME, mRNA sequence
Length = 619
Score = 66.6 bits (139), Expect(3) = 8e-030
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = -2 / +1
Query: 643 YPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+P S+PM L+A+LW+ WAT+ GRV DWS APFV S+R++
Sbjct: 100 FPKSQPMRLYASLWNADDWATQGGRVKTDWSKAPFVASFRNF 225
Score = 57.9 bits (120), Expect(3) = 8e-030
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAEC 341
W N++L + +RW +R FM YNYC D R QG+PAEC
Sbjct: 310 WWNQELSGMGYRRMRWVQRKFMIYNYCTDPKRVAQGVPAEC 432
Score = 43.7 bits (89), Expect(3) = 8e-030
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRY 656
HTY+IIWNP ++F VD IR FK +
Sbjct: 1 HTYSIIWNPQHVIFAVDGTAIRDFKNH 81
>gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015A04f, mRNA sequence
Length = 755
Score = 126 bits (269), Expect(2) = 1e-029
Identities = 44/65 (67%), Positives = 55/65 (84%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 500 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 679
Query: 556 WSDAP 542
W+ P
Sbjct: 680 WTQRP 694
Score = 23.5 bits (45), Expect(2) = 1e-029
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 547 APFVVSYRSY 518
APFVV+YR Y
Sbjct: 688 APFVVNYRGY 717
>gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014N08f, mRNA sequence
Length = 759
Score = 125 bits (268), Expect(2) = 2e-029
Identities = 44/65 (67%), Positives = 54/65 (83%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I+WNP +I+F+VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYWAT G V ID
Sbjct: 500 HTYKIVWNPKNIIFQVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYWATRHGDVKID 679
Query: 556 WSDAP 542
W P
Sbjct: 680 WDQRP 694
Score = 23.5 bits (45), Expect(2) = 2e-029
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 547 APFVVSYRSY 518
APFVV+YR Y
Sbjct: 688 APFVVNYRGY 717
>gb|AJ433500.1|AJ433500 AJ433500 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200031B06F1, mRNA sequence
Length = 375
Score = 95.9 bits (203), Expect(2) = 3e-029
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECAR 335
WM+RQLD AE GTV WA R++MRYNYC DGWRFPQG PAEC+R
Sbjct: 139 WMDRQLDDAERGTVAWARRDYMRYNYCDDGWRFPQGFPAECSR 267
Score = 52.4 bits (108), Expect(2) = 3e-029
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2 / +1
Query: 589 WATEKGRVGIDWSDAPFVVSYRSY 518
WAT+KG+V +DWS APFVVSYR Y
Sbjct: 1 WATQKGKVPVDWSGAPFVVSYRGY 72
>gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O06
5-PRIME, mRNA sequence
Length = 533
Score = 63.8 bits (133), Expect(3) = 7e-029
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECA 338
WM ++LD+ ++W ++N+M YNYC D WRF G P ECA
Sbjct: 350 WMYQELDATALDRLQWVQKNYMIYNYCTDTWRFKDGAPPECA 475
Score = 61.6 bits (128), Expect(3) = 7e-029
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = -2 / +2
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYR 524
+PY S+ M ++A++WD WAT+ GRV DWS APFV SY+
Sbjct: 161 VPYLRSQAMRVYASVWDAEEWATQGGRVRTDWSRAPFVASYK 286
Score = 39.6 bits (80), Expect(3) = 7e-029
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+++WNPT ILF VD IR +
Sbjct: 65 HTYSVLWNPTHILFYVDGTPIREHR 139
>gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC113E12_SK.ab1 similar to Glucan
endo-1,6-beta-glucosidase,Cellulase,
Xyloglucan:xyloglucosyl
transferase,Licheninase,Endo-1,3(4)-beta-glucanase,
Glycoprotein-fucosylgalactoside
alpha-galactosyltransferase,, mRNA sequence
Length = 858
Score = 113 bits (241), Expect(3) = 2e-028
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYW 587
HTYTIIWNP +ILFKVD+LFIRSFKR A LPYP+S+PM LHATLWDGSYW
Sbjct: 536 HTYTIIWNPDNILFKVDNLFIRSFKRLAGLPYPTSKPMMLHATLWDGSYW 685
Score = 28.1 bits (55), Expect(3) = 2e-028
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2 / +3
Query: 586 ATEKGRVGIDWSDAP 542
ATE G++ I+WS+AP
Sbjct: 687 ATENGKIPINWSNAP 731
Score = 22.1 bits (42), Expect(3) = 2e-028
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 541 FVVSYRSYY 515
+VVSYR+YY
Sbjct: 733 YVVSYRNYY 759
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 60.2 bits (125), Expect(3) = 8e-028
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = -2 / +1
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+ +P ++PM L+++LW+ WAT+ RV DWS APF SYR +
Sbjct: 559 IAFPKNQPMRLYSSLWNADDWATQGARVKTDWSHAPFSASYRGF 690
Score = 55.1 bits (114), Expect(3) = 8e-028
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = -2 / +1
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECA 338
W N++LD +RW + N+M YNYC D R +G+PAEC+
Sbjct: 796 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVAKGVPAECS 921
Score = 46.0 bits (94), Expect(3) = 8e-028
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -2 / +1
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+I+WNP I+F VDD+ IR FK
Sbjct: 466 HTYSILWNPKHIIFMVDDMPIRDFK 540
>gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013D21f, mRNA sequence
Length = 830
Score = 62.9 bits (131), Expect(3) = 2e-027
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -2 / +2
Query: 649 LPYPSSRPMTLHATLWDGSYWATEKGRVGIDWSDAPFVVSYRSY 518
+ +P ++PM L+++LW+ WAT+ GRV DWS APF SYR +
Sbjct: 218 IAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGF 349
Score = 51.5 bits (106), Expect(3) = 2e-027
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2 / +2
Query: 463 WMNRQLDSAEWGTVRWAERNFMRYNYCQDGWRFPQGLPAECA 338
W N++LD +RW + N+M YNYC D R +G+P +C+
Sbjct: 455 WYNQELDLTLQQRMRWVQSNYMIYNYCTDPKRVTKGVPGKCS 580
Score = 46.0 bits (94), Expect(3) = 2e-027
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -2 / +2
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFK 662
HTY+I+WNP I+F VDD+ IR FK
Sbjct: 125 HTYSILWNPKHIIFMVDDMPIRDFK 199
>gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003D18f, mRNA sequence
Length = 870
Score = 118 bits (253), Expect = 3e-026
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = -2 / +3
Query: 736 HTYTIIWNPTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYWATEKGRVGID 557
HTY I WNP +I+F+VD + +R+FK+Y LP+PS+R MT+HATLWDGSYWAT+ G V I
Sbjct: 498 HTYKITWNPKNIIFEVDGVPVRTFKKYDGLPFPSARAMTVHATLWDGSYWATQHGTVKIH 677
Query: 556 WSDAPFVVSYR 524
W PFVV Y+
Sbjct: 678 WRHDPFVVPYQ 710
>gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020F14f, mRNA sequence
Length = 882
Score = 85.8 bits (181), Expect(3) = 8e-025
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = -2 / +3
Query: 712 PTSILFKVDDLFIRSFKRYADLPYPSSRPMTLHATLWDGSYW 587
P I+F VDD+ +R+FK+Y DLPYPSS+PMT+HATLWDGSYW
Sbjct: 516 PQDIIFXVDDVPVRTFKKYDDLPYPSSQPMTVHATLWDGSYW 641
Score = 39.6 bits (80), Expect(3) = 8e-025
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -2 / +1
Query: 586 ATEKGRVGIDWSDAPFVVSYRSY 518
AT G V IDW APFVV+YR Y
Sbjct: 643 ATRHGDVQIDWDQAPFVVNYRGY 711
Score = 25.8 bits (50), Expect(3) = 8e-025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +1
Query: 736 HTYTIIWNP 710
HTY I+WNP
Sbjct: 493 HTYKIVWNP 519
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 298,381,964
Number of Sequences: 312970
Number of extensions: 4354803
Number of successful extensions: 52912
Number of sequences better than 1.0e-020: 85
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8525758509
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)