TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437687.2.1
(1171 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 425 e-118
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 408 e-113
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 408 e-113
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 389 e-107
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 283 3e-083
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 187 8e-065
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 179 8e-062
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 139 2e-058
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 170 3e-058
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 220 2e-056
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 220 2e-056
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 158 8e-055
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 144 2e-054
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 208 6e-053
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 202 4e-051
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 148 1e-050
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 139 3e-049
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 148 1e-048
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 132 2e-048
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 142 3e-048
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 144 2e-047
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 189 3e-047
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 131 4e-046
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 185 5e-046
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 168 1e-044
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 179 2e-044
gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. v... 178 6e-044
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 178 6e-044
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 144 6e-044
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 148 7e-044
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 166 2e-040
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 163 2e-039
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 110 3e-039
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 133 8e-039
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 86 1e-038
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 104 1e-038
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 106 3e-038
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 105 3e-036
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 102 6e-036
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 146 3e-034
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 92 9e-034
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 92 9e-034
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 81 4e-033
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 84 6e-033
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 66 2e-030
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 100 3e-030
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 132 5e-030
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 130 2e-029
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 129 3e-029
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 76 3e-027
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 89 6e-027
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 91 6e-027
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 76 1e-026
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 87 1e-026
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 120 2e-026
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 118 7e-026
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 76 3e-025
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 70 9e-025
gb|BI957084.1|BI957084 HVSMEn0007F13f Hordeum vulgare rachi... 82 3e-024
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 110 2e-023
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 70 2e-022
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 73 6e-022
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 104 9e-022
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 72 4e-021
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 64 6e-021
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 425 bits (923), Expect = e-118
Identities = 169/204 (82%), Positives = 182/204 (89%)
Frame = -1 / +1
Query: 988 YAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGT 809
+AADP DAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGT
Sbjct: 1 FAADPGDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGT 180
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SIVVTATNFC PNYG PADAGG CNPPNHHFLLPIQ+FEKIALWKAG+MPIQYRRVKCLR
Sbjct: 181 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 360
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQ 449
EGGVRFSV+G+ FFFTVLISNVGGAGDVRS KIKGT+ GWL MGRNWGQ+W I D+ GQ
Sbjct: 361 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSRKIKGTDSGWLYMGRNWGQIWVIIFDLTGQ 540
Query: 448 PLSFELSSSDGKALTSFNVVPKDW 377
P+SF L+ DG T+ VP+ +
Sbjct: 541 PVSFGLTLGDGATKTNNYRVPQGY 612
Score = 365 bits (791), Expect = e-100
Identities = 152/189 (80%), Positives = 160/189 (84%)
Frame = +3 / -1
Query: 387 GTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPIGSHPNSVPLIFTDLTSPAPPT 566
GT V PS ++S D GCP+ S++M H WPQLRP+ S P SVPLIF DLTSPAPPT
Sbjct: 602 GTR*LFVFVAPSPKVSPKDTGCPVRSKIMTHIWPQLRPM*SQPESVPLIFLDLTSPAPPT 423
Query: 567 LLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGRRK*WLGGLQWP 746
LLIRTVKKK P TEN TPPSRRHLTRRYW+GM PAFQSAIFSN WMGRRK WLGGLQ P
Sbjct: 422 LLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWLGGLQTP 243
Query: 747 PASAGRP*FGAQKLVAVTTMEVPGRQYLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIPYP 926
PASAG+P* G QKLVAVTTMEVPGRQYLRSSTHLTS*QPP AAPRSNSAVLSPTVAIPYP
Sbjct: 242 PASAGKP*LGGQKLVAVTTMEVPGRQYLRSSTHLTS*QPPQAAPRSNSAVLSPTVAIPYP 63
Query: 927 CFPRSPNPH 953
CFPRSPNPH
Sbjct: 62 CFPRSPNPH 36
Score = 120 bits (257), Expect(2) = 4e-036
Identities = 56/99 (56%), Positives = 70/99 (70%)
Frame = +2 / -3
Query: 410 RLAIARAELKRQRLSPHVTVDVPHLAPVAAHREPSQLCSFNLHRSNITRATNVAD*DCKE 589
R AI E K RL + + P+LAPV AH EP+++CSF+L S+IT AT++AD*DC+E
Sbjct: 579 RRAIT*GEPKGYRLPC*IEDNDPYLAPVTAHVEPARVCSFDLPGSDITSATDIAD*DCEE 400
Query: 590 EVPTVDREPDTTFTEALNTAVLDWHDAGLPERNLLKRLD 706
E D EP F +AL+ AVLD HDAGLPERNLL+RLD
Sbjct: 399 EALPRD*EPHAAFAKALDAAVLDGHDAGLPERNLLERLD 283
Score = 84.9 bits (179), Expect(3) = 7e-025
Identities = 44/97 (45%), Positives = 53/97 (54%)
Frame = -3 / +3
Query: 692 EDCALEGRHHANXXXXXXXXX*RWCQVLCQRSALLLYSPNQQRWWRG*C*ICED*RNRVG 513
EDCALEGR HA+ R VL LLL+SPNQQ WR *C I ED RNR+
Sbjct: 297 EDCALEGRRHAHPVPPRQVPSRRRRAVLSLWEELLLHSPNQQCRWRW*CQIQEDQRNRLW 476
Query: 512 MAPDGPQLGPGVAHQL*HEGTTSVV*AQLERWQGADQ 402
+A GP LGP + H L T ++ A L W+ D+
Sbjct: 477 LALHGP*LGPDMGHYLRSNRATGILWAHLR*WRDEDK 587
Score = 54.7 bits (113), Expect(2) = 4e-036
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = +2 / -3
Query: 902 PHRRHPVPVLPQIPEPARPTD 964
PHRRHPVPVLPQIPEPAR TD
Sbjct: 87 PHRRHPVPVLPQIPEPARATD 25
Score = 40.9 bits (83), Expect(3) = 7e-025
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +3
Query: 830 QVLPPRHLHSRHGHQ 786
QVLPPRHLH RHGHQ
Sbjct: 159 QVLPPRHLHRRHGHQ 203
Score = 26.3 bits (51), Expect(3) = 7e-025
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +3
Query: 938 SGEARVRDGD 909
SGEARVRDGD
Sbjct: 51 SGEARVRDGD 80
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 408 bits (886), Expect = e-113
Identities = 156/180 (86%), Positives = 170/180 (94%)
Frame = -1 / +3
Query: 868 CGGCYEVKCVEDLKYCLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEK 689
CGGCYEVKCVEDLKYCLPGTSIVVTATNFC PNYG PADAGG CNPPNHHFLLPIQ+FEK
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEK 182
Query: 688 IALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGW 509
IALWKAG+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRSVKIKGT+ GW
Sbjct: 183 IALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGW 362
Query: 508 LPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQFLL*RM 329
L MGRNWGQ+WHIN D+ GQP+SFEL+SSDG +T+FNVVPKDWE+GKTYTGKQFLL*++
Sbjct: 363 LDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQFLL*KI 542
Score = 357 bits (774), Expect = 7e-098
Identities = 148/181 (81%), Positives = 157/181 (86%)
Frame = +3 / -2
Query: 324 ALILYRRNCFPVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPI 503
++I RRNC PVYVLP SQSLGTTLK V +PSLE+SS D GCP+ S+LMCH WPQLRP+
Sbjct: 547 SIIF*RRNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPM 368
Query: 504 GSHPNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQS 683
S P SVPLIFTDLTSPAPPTLLIRTVKKK P TEN TPPSRRHLTRRYW+GM PAFQS
Sbjct: 367 SSQPESVPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQS 188
Query: 684 AIFSNDWMGRRK*WLGGLQWPPASAGRP*FGAQKLVAVTTMEVPGRQYLRSSTHLTS*QP 863
AIFSN WMGRRK WLGGLQ PPASAG+P* G QKLVAVTTMEVPGRQYLRSSTHLTS*QP
Sbjct: 187 AIFSNAWMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTTMEVPGRQYLRSSTHLTS*QP 8
Query: 864 P 866
P
Sbjct: 7 P 5
Score = 166 bits (356), Expect = 3e-040
Identities = 76/124 (61%), Positives = 92/124 (74%)
Frame = +2 / -1
Query: 335 LQKKLLPRVCLAILPILRDDVETGQRLAIARAELKRQRLSPHVTVDVPHLAPVAAHREPS 514
L+K+LL VC A LPIL DV+ R AI R ELK RL + VDVP+LAPVAAH EP+
Sbjct: 536 LEKELLAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPA 357
Query: 515 QLCSFNLHRSNITRATNVAD*DCKEEVPTVDREPDTTFTEALNTAVLDWHDAGLPERNLL 694
++CSF+LH S+IT AT++AD*DC+EE D EP F +AL+ AVLD HDAGLPERNLL
Sbjct: 356 RVCSFDLH*SDITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHDAGLPERNLL 177
Query: 695 KRLD 706
+RLD
Sbjct: 176 ERLD 165
Score = 132 bits (283), Expect(2) = 2e-036
Identities = 63/121 (52%), Positives = 75/121 (61%)
Frame = -3 / +2
Query: 692 EDCALEGRHHANXXXXXXXXX*RWCQVLCQRSALLLYSPNQQRWWRG*C*ICED*RNRVG 513
EDCALEGR HA+ R VL LLL+SPNQQ WR *C I ED RNR+
Sbjct: 179 EDCALEGRRHAHPVPPRQVPSRRRRAVLSLWEELLLHSPNQQCRWRW*CQISEDQRNRLW 358
Query: 512 MAPDGPQLGPGVAHQL*HEGTTSVV*AQLERWQGADQFQRRP*GLGVWQDIHGEAISSVE 333
+A GPQLGP +AHQL ++*A LE W D+F RR GLGVWQ+IH +A+ S+E
Sbjct: 359 LARHGPQLGPDMAHQLRSNRAAGIL*AHLE*WHDDDEF*RRAQGLGVWQNIHRQAVPSLE 538
Query: 332 N 330
N
Sbjct: 539 N 541
Score = 111 bits (238), Expect(2) = 3e-025
Identities = 54/91 (59%), Positives = 59/91 (64%)
Frame = +1 / -3
Query: 331 FSTEEIASPCMSCHTPNP*GRR*NWSAPCHRSS*AQTTEVVPSCHS*CATPGPSCGPSGA 510
FS E A CM C TPNP RR*N S+ CH S *AQ S*CA GPSCGP A
Sbjct: 540 FSREGTACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRA 361
Query: 511 IPTLFL*SSQI*HHPRHQRC*LGL*RRSADR 603
+LFL*SS I*HH RH+ C*LGL*RRS+ +
Sbjct: 360 SQSLFL*SSLI*HHQRHRHC*LGL*RRSSSQ 268
Score = 40.9 bits (83), Expect(2) = 2e-036
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +2
Query: 830 QVLPPRHLHSRHGHQ 786
QVLPPRHLH RHGHQ
Sbjct: 41 QVLPPRHLHRRHGHQ 85
Score = 24.0 bits (46), Expect(2) = 3e-025
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 661 A*CRPSRAQSSQT 699
A* RPSRAQSS+T
Sbjct: 210 A*RRPSRAQSSRT 172
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 408 bits (886), Expect = e-113
Identities = 156/180 (86%), Positives = 170/180 (94%)
Frame = -1 / +3
Query: 868 CGGCYEVKCVEDLKYCLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEK 689
CGGCYEVKCVEDLKYCLPGTSIVVTATNFC PNYG PADAGG CNPPNHHFLLPIQ+FEK
Sbjct: 3 CGGCYEVKCVEDLKYCLPGTSIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEK 182
Query: 688 IALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGW 509
IALWKAG+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRSVKIKGT+ GW
Sbjct: 183 IALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGW 362
Query: 508 LPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQFLL*RM 329
L MGRNWGQ+WHIN D+ GQP+SFEL+SSDG +T+FNVVPKDWE+GKTYTGKQFLL*++
Sbjct: 363 LDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQFLL*KI 542
Score = 357 bits (774), Expect = 7e-098
Identities = 148/181 (81%), Positives = 157/181 (86%)
Frame = +3 / -1
Query: 324 ALILYRRNCFPVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPI 503
++I RRNC PVYVLP SQSLGTTLK V +PSLE+SS D GCP+ S+LMCH WPQLRP+
Sbjct: 547 SIIF*RRNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPM 368
Query: 504 GSHPNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQS 683
S P SVPLIFTDLTSPAPPTLLIRTVKKK P TEN TPPSRRHLTRRYW+GM PAFQS
Sbjct: 367 SSQPESVPLIFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQS 188
Query: 684 AIFSNDWMGRRK*WLGGLQWPPASAGRP*FGAQKLVAVTTMEVPGRQYLRSSTHLTS*QP 863
AIFSN WMGRRK WLGGLQ PPASAG+P* G QKLVAVTTMEVPGRQYLRSSTHLTS*QP
Sbjct: 187 AIFSNAWMGRRKWWLGGLQTPPASAGKP*LGGQKLVAVTTMEVPGRQYLRSSTHLTS*QP 8
Query: 864 P 866
P
Sbjct: 7 P 5
Score = 166 bits (356), Expect = 3e-040
Identities = 76/124 (61%), Positives = 92/124 (74%)
Frame = +2 / -3
Query: 335 LQKKLLPRVCLAILPILRDDVETGQRLAIARAELKRQRLSPHVTVDVPHLAPVAAHREPS 514
L+K+LL VC A LPIL DV+ R AI R ELK RL + VDVP+LAPVAAH EP+
Sbjct: 536 LEKELLAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPA 357
Query: 515 QLCSFNLHRSNITRATNVAD*DCKEEVPTVDREPDTTFTEALNTAVLDWHDAGLPERNLL 694
++CSF+LH S+IT AT++AD*DC+EE D EP F +AL+ AVLD HDAGLPERNLL
Sbjct: 356 RVCSFDLH*SDITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHDAGLPERNLL 177
Query: 695 KRLD 706
+RLD
Sbjct: 176 ERLD 165
Score = 132 bits (283), Expect(2) = 2e-036
Identities = 63/121 (52%), Positives = 75/121 (61%)
Frame = -3 / +2
Query: 692 EDCALEGRHHANXXXXXXXXX*RWCQVLCQRSALLLYSPNQQRWWRG*C*ICED*RNRVG 513
EDCALEGR HA+ R VL LLL+SPNQQ WR *C I ED RNR+
Sbjct: 179 EDCALEGRRHAHPVPPRQVPSRRRRAVLSLWEELLLHSPNQQCRWRW*CQISEDQRNRLW 358
Query: 512 MAPDGPQLGPGVAHQL*HEGTTSVV*AQLERWQGADQFQRRP*GLGVWQDIHGEAISSVE 333
+A GPQLGP +AHQL ++*A LE W D+F RR GLGVWQ+IH +A+ S+E
Sbjct: 359 LARHGPQLGPDMAHQLRSNRAAGIL*AHLE*WHDDDEF*RRAQGLGVWQNIHRQAVPSLE 538
Query: 332 N 330
N
Sbjct: 539 N 541
Score = 111 bits (238), Expect(2) = 3e-025
Identities = 54/91 (59%), Positives = 59/91 (64%)
Frame = +1 / -2
Query: 331 FSTEEIASPCMSCHTPNP*GRR*NWSAPCHRSS*AQTTEVVPSCHS*CATPGPSCGPSGA 510
FS E A CM C TPNP RR*N S+ CH S *AQ S*CA GPSCGP A
Sbjct: 540 FSREGTACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRA 361
Query: 511 IPTLFL*SSQI*HHPRHQRC*LGL*RRSADR 603
+LFL*SS I*HH RH+ C*LGL*RRS+ +
Sbjct: 360 SQSLFL*SSLI*HHQRHRHC*LGL*RRSSSQ 268
Score = 40.9 bits (83), Expect(2) = 2e-036
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +2
Query: 830 QVLPPRHLHSRHGHQ 786
QVLPPRHLH RHGHQ
Sbjct: 41 QVLPPRHLHRRHGHQ 85
Score = 24.0 bits (46), Expect(2) = 3e-025
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 661 A*CRPSRAQSSQT 699
A* RPSRAQSS+T
Sbjct: 210 A*RRPSRAQSSRT 172
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 389 bits (844), Expect = e-107
Identities = 149/173 (86%), Positives = 161/173 (93%)
Frame = -1 / +3
Query: 868 CGGCYEVKCVEDLKYCLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEK 689
CGG Y VKCVEDLKYCLPGTSIVVTATNFC PNYG PADAGG CNPPNHHFLLPIQ+FEK
Sbjct: 3 CGG*YAVKCVEDLKYCLPGTSIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEK 182
Query: 688 IALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGW 509
IALWKAG+MPIQYRRVKCLREGGVRFSV+G+ FFFTVLISNVGGAGDVRSVKIKGT+ GW
Sbjct: 183 IALWKAGVMPIQYRRVKCLREGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGW 362
Query: 508 LPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGK 350
L MGRNWGQ+WHIN D+ GQP+SFEL+SSDG +T+FNVVPKDWE+GKTYTGK
Sbjct: 363 LDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGK 521
Score = 341 bits (738), Expect = 6e-093
Identities = 141/171 (82%), Positives = 149/171 (87%)
Frame = +3 / -3
Query: 354 PVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPIGSHPNSVPLI 533
PVYVLP SQSLGTTLK V +PSLE+SS D GCP+ S+LMCH WPQLRP+ S P SVPLI
Sbjct: 517 PVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPESVPLI 338
Query: 534 FTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGR 713
FTDLTSPAPPTLLIRTVKKK P TEN TPPSRRHLTRRYW+GM PAFQSAIFSN WMGR
Sbjct: 337 FTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGR 158
Query: 714 RK*WLGGLQWPPASAGRP*FGAQKLVAVTTMEVPGRQYLRSSTHLTS*QPP 866
RK WLGGLQ PPASAG+P* G QKLVAVTTMEVPGRQYLRSSTHLT+ QPP
Sbjct: 157 RKWWLGGLQTPPASAGKP*LGGQKLVAVTTMEVPGRQYLRSSTHLTAYQPP 5
Score = 158 bits (340), Expect = 5e-038
Identities = 73/119 (61%), Positives = 87/119 (73%)
Frame = +2 / -2
Query: 350 LPRVCLAILPILRDDVETGQRLAIARAELKRQRLSPHVTVDVPHLAPVAAHREPSQLCSF 529
L VC A LPIL DV+ R AI R ELK RL + VDVP+LAPVAAH EP+++CSF
Sbjct: 521 LAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPARVCSF 342
Query: 530 NLHRSNITRATNVAD*DCKEEVPTVDREPDTTFTEALNTAVLDWHDAGLPERNLLKRLD 706
+LH S+IT AT++AD*DC+EE D EP F +AL+ AVLD HDAGLPERNLL+RLD
Sbjct: 341 DLH*SDITSATDIAD*DCEEEALPRD*EPHAAFAKALDAAVLDGHDAGLPERNLLERLD 165
Score = 122 bits (261), Expect(2) = 2e-033
Identities = 59/112 (52%), Positives = 68/112 (60%)
Frame = -3 / +2
Query: 692 EDCALEGRHHANXXXXXXXXX*RWCQVLCQRSALLLYSPNQQRWWRG*C*ICED*RNRVG 513
EDCALEGR HA+ R VL LLL+SPNQQ WR *C I ED RNR+
Sbjct: 179 EDCALEGRRHAHPVPPRQVPSRRRRAVLSLWEELLLHSPNQQCRWRW*CQISEDQRNRLW 358
Query: 512 MAPDGPQLGPGVAHQL*HEGTTSVV*AQLERWQGADQFQRRP*GLGVWQDIH 357
+A GPQLGP +AHQL ++*A LE W D+F RR GLGVWQ+IH
Sbjct: 359 LARHGPQLGPDMAHQLRSNRAAGIL*AHLE*WHDDDEF*RRAQGLGVWQNIH 514
Score = 106 bits (227), Expect(2) = 8e-024
Identities = 51/85 (60%), Positives = 56/85 (65%)
Frame = +1 / -1
Query: 349 ASPCMSCHTPNP*GRR*NWSAPCHRSS*AQTTEVVPSCHS*CATPGPSCGPSGAIPTLFL 528
A CM C TPNP RR*N S+ CH S *AQ S*CA GPSCGP A +LFL
Sbjct: 522 ACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRASQSLFL 343
Query: 529 *SSQI*HHPRHQRC*LGL*RRSADR 603
*SS I*HH RH+ C*LGL*RRS+ +
Sbjct: 342 *SSLI*HHQRHRHC*LGL*RRSSSQ 268
Score = 40.9 bits (83), Expect(2) = 2e-033
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +2
Query: 830 QVLPPRHLHSRHGHQ 786
QVLPPRHLH RHGHQ
Sbjct: 41 QVLPPRHLHRRHGHQ 85
Score = 24.0 bits (46), Expect(2) = 8e-024
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -1
Query: 661 A*CRPSRAQSSQT 699
A* RPSRAQSS+T
Sbjct: 210 A*RRPSRAQSSRT 172
>gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O13f, mRNA sequence
Length = 669
Score = 283 bits (612), Expect(2) = 3e-083
Identities = 111/143 (77%), Positives = 122/143 (85%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y+AADP DAIGGACGF DLGKHGYGMATVGLSTAL RGA+C GCYEV CV+DLK+ LPG
Sbjct: 219 YFAADPGDAIGGACGFWDLGKHGYGMATVGLSTALIYRGASCRGCYEVNCVDDLKHWLPG 398
Query: 811 TSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCL 632
TS+V+T T FC PNYG PADA G CNPPNHHFLLP+Q+FEKIALWKAG+MPIQYRRVKCL
Sbjct: 399 TSMVMTGTKFCPPNYGFPADACGVCNPPNHHFLLPMQAFEKIALWKAGVMPIQYRRVKCL 578
Query: 631 REGGVRFSVNGRHFFFTVLISNV 563
RE VR SV+G+ FTVLI V
Sbjct: 579 RESSVRLSVSGKKLLFTVLIXMV 647
Score = 214 bits (462), Expect(2) = 7e-060
Identities = 95/130 (73%), Positives = 100/130 (76%)
Frame = +3 / -3
Query: 564 TLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGRRK*WLGGLQW 743
T+ IRTVK+ P T+N T SRRHLTRRYW+GM PAFQSAIFSN MGRRK WLGGL
Sbjct: 646 TIXIRTVKRSFFPETDNRTLLSRRHLTRRYWMGMTPAFQSAIFSNACMGRRKWWLGGLHT 467
Query: 744 PPASAGRP*FGAQKLVAVTTMEVPGRQYLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIPY 923
P ASAG+P* G Q LV V TMEVPG Q RSST LTS*QP APR SAVLSPTVAIPY
Sbjct: 466 PQASAGKP*LGGQNLVPVMTMEVPGSQCFRSSTQLTS*QPRQEAPR*ISAVLSPTVAIPY 287
Query: 924 PCFPRSPNPH 953
PCFPRS NPH
Sbjct: 286 PCFPRSQNPH 257
Score = 46.4 bits (95), Expect(2) = 3e-083
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / +3
Query: 1064 AAGHQHPSSYGSSALSEWR 1008
A GHQHPSSYGS ALSEWR
Sbjct: 147 AVGHQHPSSYGSCALSEWR 203
Score = 37.3 bits (75), Expect(2) = 7e-060
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1 / -3
Query: 1012 HSESAEEP*EDGCWCP 1059
HSESA++P*E+GCW P
Sbjct: 199 HSESAQDP*EEGCWWP 152
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 187 bits (403), Expect(2) = 8e-065
Identities = 73/130 (56%), Positives = 94/130 (72%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI+VTATNFC PNYGLP+D GG CNPP HF + +F IA ++AGI+P+ YRRV C++
Sbjct: 387 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVK 566
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQ 449
+GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNWG W N + Q
Sbjct: 567 KGGIRFTINGHSYFNLVLVTNVXGAGDARSVFIKGTRTGWQAMSRNWGMNWQSNTFLGRQ 746
Query: 448 PLSFELSSSD 419
LSF+++S D
Sbjct: 747 CLSFKVTSRD 776
Score = 96.4 bits (204), Expect(2) = 3e-031
Identities = 55/130 (42%), Positives = 67/130 (51%)
Frame = +3 / -3
Query: 420 SLELSSNDRGCPLMSQLMCHTWPQLRPIGSHPNSVPLIFTDLTSPAPPTLLIRTVKKKCR 599
SLE++ +R L+C PQLR + P VPL+ T+ SPAP TL+ T K
Sbjct: 775 SLEVTLKERHWRPRKVLLCQFMPQLRDMACQPVRVPLMNTERASPAPXTLVTSTRLK*EW 596
Query: 600 PLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGRRK*WLGGLQWPPASAGRP*FGA 779
PL N PP H T G MPA A++ K GGL PP+S GRP* G
Sbjct: 595 PLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGG 416
Query: 780 QKLVAVTTME 809
QKLVAVT M+
Sbjct: 415 QKLVAVTMMD 386
Score = 80.8 bits (170), Expect(2) = 8e-065
Identities = 32/64 (50%), Positives = 39/64 (60%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y D +GGACG+G+L GYG T LSTALF GAACG CYE++C C PG
Sbjct: 207 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPG 386
Query: 811 TSIV 800
+ +V
Sbjct: 387 SIMV 398
Score = 59.7 bits (124), Expect(2) = 3e-031
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = +3 / -3
Query: 789 VAVTTMEVPGRQYLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIPYPCFPRSPNPH 953
+ TM PGR L + + +S* PHAAP NSAVLS V +PYP R P PH
Sbjct: 409 LVAVTMMDPGRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPH 245
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 179 bits (385), Expect(2) = 8e-062
Identities = 67/114 (58%), Positives = 84/114 (73%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI+VTATNFC PNYGLP+D GG CNPP HF + +F IA ++AGI+P+ YRRV C++
Sbjct: 169 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVK 348
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHIN 467
+GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNWG W N
Sbjct: 349 KGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSN 510
Score = 93.2 bits (197), Expect(2) = 2e-030
Identities = 51/114 (44%), Positives = 60/114 (52%)
Frame = +3 / -3
Query: 468 LMCHTWPQLRPIGSHPNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTR 647
L+C PQLR + P VPL+ T+ SPAP TL+ T K PL N PP H T
Sbjct: 509 LLCQFMPQLRDMACQPVRVPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTL 330
Query: 648 RYWIGMMPAFQSAIFSNDWMGRRK*WLGGLQWPPASAGRP*FGAQKLVAVTTME 809
G MPA A++ K GGL PP+S GRP* G QKLVAVT M+
Sbjct: 329 L*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMD 168
Score = 79.0 bits (166), Expect(2) = 8e-062
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = -1 / +1
Query: 973 EDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPGTSIV 800
E +GGACG+G+L GYG T LSTALF GAACG CYE++C C PG+ +V
Sbjct: 7 EGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPGSIMV 180
Score = 59.7 bits (124), Expect(2) = 2e-030
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = +3 / -3
Query: 789 VAVTTMEVPGRQYLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIPYPCFPRSPNPH 953
+ TM PGR L + + +S* PHAAP NSAVLS V +PYP R P PH
Sbjct: 191 LVAVTMMDPGRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPH 27
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 139 bits (299), Expect(3) = 2e-058
Identities = 51/103 (49%), Positives = 72/103 (69%)
Frame = -1 / +1
Query: 835 DLKYCLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPI 656
D +C PG ++ VTATNFC PN LP D GG CNPP HF + ++EKI +++ GI+P+
Sbjct: 160 DPLFCKPGVTVTVTATNFCPPNNALPNDNGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPV 339
Query: 655 QYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIK 527
Y+RV C++ GGVRF +NG +F VL+SNV AG ++S+ +K
Sbjct: 340 MYQRVPCVKRGGVRFKMNGHDYFNLVLVSNVAAAGSIQSMDVK 468
Score = 75.8 bits (159), Expect(3) = 1e-022
Identities = 43/95 (45%), Positives = 44/95 (46%)
Frame = +3 / -2
Query: 540 DLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGRRK 719
D PA TLL T K P NLTPP H T Y GMMP + IFS K
Sbjct: 455 DWIEPAAATLLTSTRLK*S*PFILNLTPPRFTHGTLWYMTGMMPPL*TPIFSQAGCAMSK 276
Query: 720 *WLGGLQWPPASAGRP*FGAQKLVAVTTMEVPGRQ 824
GGL PP S GR G QK VAVT PG Q
Sbjct: 275 CGRGGLHQPPLSLGRALLGGQKFVAVTVTVTPGLQ 171
Score = 74.4 bits (156), Expect(3) = 2e-058
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = -1 / +1
Query: 982 ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
AD D +GGACG+G+L GYG T LST LF GAACG CY++ C
Sbjct: 4 ADASDTMGGACGYGNLFSEGYGTRTAALSTVLFNDGAACGQCYKIAC 144
Score = 51.5 bits (106), Expect(3) = 2e-058
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1 / +1
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKAL 407
W+PM RNWG WH ++ G+ L+F L++SDG L
Sbjct: 487 WMPMARNWGANWHSLANLTGKMLAFRLTNSDGHTL 591
Score = 40.5 bits (82), Expect(3) = 1e-022
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3 / -2
Query: 831 RSSTHLTS*QPPHAAPRSNSAVLSPTVAIPYPCFPRSPNPH 953
R +H * P AAP N+ VL V +PYP R P PH
Sbjct: 155 RLRSHAIL*HCPQAAPSLNNTVLRAAVRVPYPSEKRLPYPH 33
Score = 28.1 bits (55), Expect(3) = 1e-022
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2 / -1
Query: 407 QRLAIARAELKRQRLSPHVTVDVPHLAPVAAHREP 511
+R++I K + L+ V+ VP APVA HR P
Sbjct: 591 KRVSITVG*SKGEHLAGEVSQ*VPVSAPVACHRHP 487
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 170 bits (365), Expect(2) = 3e-058
Identities = 62/114 (54%), Positives = 83/114 (72%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 192 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 371
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHIN 467
+GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNWGQ W N
Sbjct: 372 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSN 533
Score = 76.2 bits (160), Expect(2) = 3e-058
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 18 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 167
Score = 68.4 bits (143), Expect(3) = 5e-025
Identities = 34/69 (49%), Positives = 38/69 (55%)
Frame = +3 / -3
Query: 468 LMCHTWPQLRPIGSHPNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTR 647
L+C WPQLR + HP PL+ TD TSPAP TL+ T K PL NL PP T
Sbjct: 532 LLCQFWPQLRDMACHPELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTL 353
Query: 648 RYWIGMMPA 674
R G MPA
Sbjct: 352 R*ETGTMPA 326
Score = 49.2 bits (101), Expect(3) = 5e-025
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +3 / -3
Query: 843 HLTS*QPPHAAPRSNSAVLSPTVAIPYPCFPRSPNPH 953
HL+S* PHAAP NSAVLS V +P P R P PH
Sbjct: 166 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PH 56
Score = 35.0 bits (70), Expect(3) = 5e-025
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3 / -3
Query: 729 GGLQWPPASAGRP*FGAQKLVAVTTM 806
GGL PP+S G * G Q+LVAV M
Sbjct: 271 GGLHQPPSSLGSA*LGGQRLVAVMVM 194
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 220 bits (474), Expect = 2e-056
Identities = 81/155 (52%), Positives = 110/155 (70%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 49 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 228
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQ 449
+GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNWGQ W N D+ GQ
Sbjct: 229 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQ 408
Query: 448 PLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
LSF ++ SDG+ +TS N P W +G+T+ G QF
Sbjct: 409 SLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 513
Score = 94.1 bits (199), Expect(2) = 3e-023
Identities = 51/114 (44%), Positives = 59/114 (51%)
Frame = +3 / -2
Query: 333 LYRRNCFPVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPIGSH 512
L R N P V P Q G L LV+ PSL ++ +R P S L+C WPQLR + H
Sbjct: 524 LAR*NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 345
Query: 513 PNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPA 674
P PL+ TD TSPAP TL+ T K PL NL PP T R G MPA
Sbjct: 344 PELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPA 183
Score = 35.0 bits (70), Expect(2) = 3e-023
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3 / -2
Query: 729 GGLQWPPASAGRP*FGAQKLVAVTTM 806
GGL PP+S G * G Q+LVAV M
Sbjct: 128 GGLHQPPSSLGSA*LGGQRLVAVMVM 51
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 220 bits (474), Expect = 2e-056
Identities = 81/155 (52%), Positives = 110/155 (70%)
Frame = -1 / -3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 718 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 539
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQ 449
+GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNWGQ W N D+ GQ
Sbjct: 538 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQ 359
Query: 448 PLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
LSF ++ SDG+ +TS N P W +G+T+ G QF
Sbjct: 358 SLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 254
Score = 94.1 bits (199), Expect(2) = 3e-023
Identities = 51/114 (44%), Positives = 59/114 (51%)
Frame = +3 / +3
Query: 333 LYRRNCFPVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPIGSH 512
L R N P V P Q G L LV+ PSL ++ +R P S L+C WPQLR + H
Sbjct: 243 LAR*NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 422
Query: 513 PNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPA 674
P PL+ TD TSPAP TL+ T K PL NL PP T R G MPA
Sbjct: 423 PELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPA 584
Score = 35.0 bits (70), Expect(2) = 3e-023
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3 / +3
Query: 729 GGLQWPPASAGRP*FGAQKLVAVTTM 806
GGL PP+S G * G Q+LVAV M
Sbjct: 639 GGLHQPPSSLGSA*LGGQRLVAVMVM 716
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 158 bits (340), Expect(2) = 8e-055
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP H + ++ +I +++AGI+P+ YRRV C++
Sbjct: 325 SITITATNLCPPNYALPNDDGGWCNPPRAHCDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 504
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVW 476
+GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M +WGQ W
Sbjct: 505 KGGIRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMCPHWGQNW 657
Score = 76.2 bits (160), Expect(2) = 8e-055
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / +1
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 151 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 300
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 144 bits (310), Expect(3) = 2e-054
Identities = 54/96 (56%), Positives = 73/96 (76%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
S VVTATNFC PN+G +DAGG CNPP HF + F++IAL++AGI+P+ YRRV C +
Sbjct: 123 STVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQK 302
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
+GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 303 KGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 410
Score = 72.5 bits (152), Expect(3) = 2e-054
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -1 / +3
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
W + RNWGQ W N + GQ LSF +++ +G+++ S N VP+ W +G+T++G QF
Sbjct: 423 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 590
Score = 34.5 bits (69), Expect(3) = 2e-054
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1 / +3
Query: 904 GLSTALFERGAACGGCYEVKC 842
G ALF G +CG C+EV+C
Sbjct: 12 GPEPALFNNGLSCGACFEVRC 74
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 208 bits (448), Expect = 6e-053
Identities = 76/149 (51%), Positives = 104/149 (69%)
Frame = -1 / +2
Query: 790 TNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRF 611
T C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C+++GG+RF
Sbjct: 5 TRLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRF 184
Query: 610 SVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFEL 431
++NG +F VL++NV GAGDV+SV IKG+ GW M RNWGQ W N D+ GQ LSF +
Sbjct: 185 TINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRV 364
Query: 430 SSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
+ SDG+ +TS N P W +G+T+ G QF
Sbjct: 365 TLSDGRTVTSNNAAPAGWSFGQTFEGGQF 451
Score = 94.1 bits (199), Expect(2) = 2e-021
Identities = 51/114 (44%), Positives = 59/114 (51%)
Frame = +3 / -2
Query: 333 LYRRNCFPVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPIGSH 512
L R N P V P Q G L LV+ PSL ++ +R P S L+C WPQLR + H
Sbjct: 462 LAR*NWPPSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACH 283
Query: 513 PNSVPLIFTDLTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPA 674
P PL+ TD TSPAP TL+ T K PL NL PP T R G MPA
Sbjct: 282 PELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPA 121
Score = 28.6 bits (56), Expect(2) = 2e-021
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3 / -2
Query: 729 GGLQWPPASAGRP*FGAQKLV 791
GGL PP+S G * G Q LV
Sbjct: 66 GGLHQPPSSLGSA*LGGQSLV 4
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 202 bits (435), Expect = 4e-051
Identities = 74/144 (51%), Positives = 102/144 (70%)
Frame = -1 / +3
Query: 775 PNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGR 596
PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C+++GG+RF++NG
Sbjct: 6 PNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGH 185
Query: 595 HFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDG 416
+F VL++NV GAGDV+SV IKG+ GW M RNWGQ W N D+ GQ LSF ++ SDG
Sbjct: 186 SYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSDG 365
Query: 415 KALTSFNVVPKDWEYGKTYTGKQF 344
+ +TS N P W +G+T+ G QF
Sbjct: 366 RTVTSNNAAPAGWSFGQTFEGGQF 437
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 148 bits (318), Expect(2) = 1e-050
Identities = 55/108 (50%), Positives = 77/108 (71%)
Frame = -1 / +3
Query: 823 CLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRR 644
C GTSI +TATNFC PNY L +D GG CNPP HF + ++E IA+++AGI+P+ Y+R
Sbjct: 303 CKQGTSITITATNFCPPNYALASDNGGWCNPPRQHFDMSQPAWETIAIYQAGIVPVNYKR 482
Query: 643 VKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPM 500
V C R GG+RF++NG +F V ++NVGG+G V + IKG++ W+ M
Sbjct: 483 VPCQRSGGMRFTINGNDYFELVTVANVGGSGVVSQMWIKGSKTDWMVM 626
Score = 72.1 bits (151), Expect(2) = 1e-050
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = -1 / +3
Query: 1003 FMASYYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
F Y +D D +GGACG+G+L GYG+ + LSTALF GA+CG C+ + C
Sbjct: 120 FATFYGGSDASDTMGGACGYGNLYNAGYGVNSAALSTALFNNGASCGMCFTITC 281
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 139 bits (299), Expect(2) = 3e-049
Identities = 51/95 (53%), Positives = 72/95 (75%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 348 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 527
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKG 524
+GG+RF++NG +F VL++NV GAGDV+SV I+G
Sbjct: 528 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIRG 632
Score = 76.2 bits (160), Expect(2) = 3e-049
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 174 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 323
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 148 bits (318), Expect(3) = 1e-048
Identities = 56/123 (45%), Positives = 83/123 (67%)
Frame = -1 / +1
Query: 754 DAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVL 575
D GG CNPP HF + ++ +I +++AGI+P+ YRRV C+++GG+RF++NG +F VL
Sbjct: 184 DDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVL 363
Query: 574 ISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFN 395
++NV GAGDV+SV IKG+ GW M WG W N D+ GQ LSF+++ + + +T N
Sbjct: 364 VTNVAGAGDVQSVSIKGSSSGWQAMFPQWGHNWQSNADLDGQSLSFQVTLTYRRDVTINN 543
Query: 394 VVP 386
P
Sbjct: 544 AAP 552
Score = 52.4 bits (108), Expect(3) = 1e-048
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = -1 / +2
Query: 943 GDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
G+L G G T LSTALF GAACG CYE+KC
Sbjct: 5 GNLYSTGCGTNTAALSTALFNDGAACGSCYELKC 106
Score = 31.8 bits (63), Expect(3) = 1e-048
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1 / +2
Query: 808 SIVVTATNFCAPNYGL 761
SI +TATN C PNY L
Sbjct: 131 SITITATNLCPPNYAL 178
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 132 bits (283), Expect(2) = 2e-048
Identities = 50/90 (55%), Positives = 67/90 (74%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI+VTATNFC PNYGLP+D GG CNPP H + +F IA ++AGI+P+ YRRV C++
Sbjct: 387 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHLDMAEPAFLHIAQYRAGIVPLSYRRVPCVK 566
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRS 539
+GG+RF++NG + L++NV GAGD RS
Sbjct: 567 KGGIRFTINGHSYLNLGLVTNVAGAGDARS 656
Score = 80.8 bits (170), Expect(2) = 2e-048
Identities = 32/64 (50%), Positives = 39/64 (60%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y D +GGACG+G+L GYG T LSTALF GAACG CYE++C C PG
Sbjct: 207 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPG 386
Query: 811 TSIV 800
+ +V
Sbjct: 387 SIMV 398
Score = 64.8 bits (135), Expect(2) = 6e-022
Identities = 39/87 (44%), Positives = 44/87 (50%)
Frame = +3 / -1
Query: 549 SPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGRRK*WL 728
SPAP TL+ K PL N PP H T G MPA A++ K
Sbjct: 646 SPAPATLVTSPRFK*EWPLMVNRMPPFFTHGTLL*ERGTMPARYCAMWRKAGSAMSKWGR 467
Query: 729 GGLQWPPASAGRP*FGAQKLVAVTTME 809
GGL PP+S GRP* G QKLVAVT M+
Sbjct: 466 GGLHQPPSSLGRP*LGGQKLVAVTMMD 386
Score = 59.7 bits (124), Expect(2) = 6e-022
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = +3 / -1
Query: 789 VAVTTMEVPGRQYLRSSTHLTS*QPPHAAPRSNSAVLSPTVAIPYPCFPRSPNPH 953
+ TM PGR L + + +S* PHAAP NSAVLS V +PYP R P PH
Sbjct: 409 LVAVTMMDPGRHELPALSQRSS*HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPH 245
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 142 bits (305), Expect(4) = 3e-048
Identities = 54/103 (52%), Positives = 75/103 (72%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 112 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 291
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPM 500
+GG+RF++NG +F VL++NV GAGDV+SV IKG G P+
Sbjct: 292 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGPAPGGGPV 420
Score = 53.8 bits (111), Expect(4) = 3e-048
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = -1 / +1
Query: 925 GYGMATVGLSTALFERGAACGGCYEVKC 842
GYG T LSTALF GAACG CYE+KC
Sbjct: 4 GYGTNTAALSTALFNDGAACGSCYELKC 87
Score = 26.7 bits (52), Expect(4) = 3e-048
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1 / +1
Query: 442 SFELSSSDGKALTSFNVVPKDWEYGKTYTGKQ 347
SF + + TS P W +G+T+ G+Q
Sbjct: 478 SFGSPLAKAEPSTSTTSAPSRWSFGQTFQGRQ 573
Score = 25.8 bits (50), Expect(4) = 3e-048
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1 / +2
Query: 502 MGRNWGQVWHINCDMR 455
+ RNWGQ W N +R
Sbjct: 416 LSRNWGQNWQSNGGLR 463
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 144 bits (310), Expect(3) = 2e-047
Identities = 54/96 (56%), Positives = 73/96 (76%)
Frame = -1 / +2
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
S VVTATNFC PN+G +DAGG CNPP HF + F++IAL++AGI+P+ YRRV C +
Sbjct: 119 STVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQK 298
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
+GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 299 KGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 406
Score = 41.8 bits (85), Expect(3) = 2e-047
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGK 413
W + RNWGQ W N + GQ LSF +++ +G+
Sbjct: 419 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQ 517
Score = 41.8 bits (85), Expect(3) = 2e-047
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -1 / +2
Query: 910 TVGLSTALFERGAACGGCYEVKC 842
T LSTALF G +CG C+EV+C
Sbjct: 2 TAALSTALFNNGLSCGACFEVRC 70
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 189 bits (407), Expect = 3e-047
Identities = 73/150 (48%), Positives = 97/150 (64%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
S +VTATN C NY + GG CNPP HF L F +IA +AG++P+QYRRV C++
Sbjct: 4 SAMVTATNLCPANYARANNDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVK 183
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQ 449
GG+RF++ G +F VLI+NV GAGD+ SV +K GWL M NWG W + GQ
Sbjct: 184 TGGIRFTITGHSYFNLVLITNVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQ 363
Query: 448 PLSFELSSSDGKALTSFNVVPKDWEYGKTY 359
PLSF +++SDG+ TS NV P W +G+T+
Sbjct: 364 PLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
Score = 105 bits (224), Expect = 5e-022
Identities = 61/149 (40%), Positives = 71/149 (47%)
Frame = +3 / -3
Query: 363 VLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPIGSHPNSVPLIFTD 542
V P Q G TL V PSL ++ D G PL C PQL + SHP +TD
Sbjct: 449 VWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHPVLGAFTYTD 270
Query: 543 LTSPAPPTLLIRTVKKKCRPLTENLTPPSRRHLTRRYWIGMMPAFQSAIFSNDWMGRRK* 722
+ SPAP TL++ T K P+ N PP H T YW G PA AI N R K
Sbjct: 269 IRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGSARSKC 90
Query: 723 WLGGLQWPPASAGRP*FGAQKLVAVTTME 809
GGL PP+ R * Q+LVAVT E
Sbjct: 89 DCGGLHHPPSLLARA*LAGQRLVAVTMAE 3
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 131 bits (280), Expect(2) = 4e-046
Identities = 47/88 (53%), Positives = 66/88 (75%)
Frame = -1 / +2
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 326 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 505
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDV 545
+GG+RF++NG +F VL++NV GAGDV
Sbjct: 506 KGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 74.4 bits (156), Expect(2) = 4e-046
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = -1 / +2
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y + +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 152 YGGGEASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 301
>gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N24 5', mRNA sequence
Length = 370
Score = 185 bits (398), Expect = 5e-046
Identities = 63/117 (53%), Positives = 90/117 (76%)
Frame = -1 / +1
Query: 823 CLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRR 644
C PGTSI V+ATNFC PN+ LP+D GG CNPP HHF + ++E I +++AGI+P+ Y++
Sbjct: 19 CKPGTSITVSATNFCPPNWDLPSDNGGWCNPPRHHFDMSQPAWENIGIYRAGIIPVFYQQ 198
Query: 643 VKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWH 473
VKC R+GGVRF++NG ++F VL++N+ G+G ++S+ +KGT W+PM RNWG WH
Sbjct: 199 VKCWRQGGVRFTINGFNYFELVLVANIAGSGSIKSMSVKGTNTAWIPMSRNWGANWH 369
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 168 bits (361), Expect(2) = 1e-044
Identities = 62/114 (54%), Positives = 82/114 (71%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 87 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 266
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHIN 467
+GG+RF++NG +F VL +NV GAGDV+SV IKG+ GW M RNWGQ W N
Sbjct: 267 KGGMRFTINGHSYFNLVLXTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSN 428
Score = 32.7 bits (65), Expect(2) = 1e-044
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1 / +3
Query: 877 GAACGGCYEVKC 842
GAACG CYE+KC
Sbjct: 27 GAACGSCYELKC 62
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 179 bits (386), Expect = 2e-044
Identities = 68/137 (49%), Positives = 90/137 (65%)
Frame = -1 / +1
Query: 754 DAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVL 575
D GG CNPP HF L F +IA +AG++P+QYRRV C++ GG+RF++ G +F VL
Sbjct: 10 DDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVL 189
Query: 574 ISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFN 395
I+NV GAGD+ SV +K GWL M NWG W + GQPLSF +++SDG+ TS N
Sbjct: 190 ITNVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNN 369
Query: 394 VVPKDWEYGKTYTGKQF 344
V P W +G+T+ G QF
Sbjct: 370 VAPYGWTFGQTFAGSQF 420
>gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. vulgare cDNA clone HF16A18
5-PRIME, mRNA sequence
Length = 535
Score = 178 bits (383), Expect(2) = 6e-044
Identities = 68/84 (80%), Positives = 78/84 (92%)
Frame = -1 / -1
Query: 580 VLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTS 401
VLISNVGGAGDVRSVKIKGT+ GWL MGRNWGQ+WHIN D+ GQP+SFEL+SSDG +T+
Sbjct: 535 VLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQPVSFELTSSDGTTMTN 356
Query: 400 FNVVPKDWEYGKTYTGKQFLL*RM 329
FNVVPKDWE+GKTYTGKQFLL*++
Sbjct: 355 FNVVPKDWEFGKTYTGKQFLL*KI 284
Score = 159 bits (341), Expect(2) = 3e-038
Identities = 64/85 (75%), Positives = 71/85 (83%)
Frame = +3 / +3
Query: 324 ALILYRRNCFPVYVLPYSQSLGTTLKLVSALPSLELSSNDRGCPLMSQLMCHTWPQLRPI 503
++I RRNC PVYVLP SQSLGTTLK V +PSLE+SS D GCP+ S+LMCH WPQLRP+
Sbjct: 279 SIIF*RRNCLPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPM 458
Query: 504 GSHPNSVPLIFTDLTSPAPPTLLIR 578
S P SVPLIFTDLTSPAPPTLLIR
Sbjct: 459 SSQPESVPLIFTDLTSPAPPTLLIR 533
Score = 105 bits (223), Expect = 7e-022
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = +2 / +2
Query: 335 LQKKLLPRVCLAILPILRDDVETGQRLAIARAELKRQRLSPHVTVDVPHLAPVAAHREPS 514
L+K+LL VC A LPIL DV+ R AI R ELK RL + VDVP+LAPVAAH EP+
Sbjct: 290 LEKELLAGVCFAKLPILGHDVKIRHRRAITRGELKGYRLPC*I*VDVPYLAPVAAHVEPA 469
Query: 515 QLCSFNLHRSNITRATNVAD*D 580
++CSF+LH S+IT AT++AD*D
Sbjct: 470 RVCSFDLH*SDITSATDIAD*D 535
Score = 104 bits (222), Expect = 9e-022
Identities = 46/83 (55%), Positives = 56/83 (67%)
Frame = -3 / -3
Query: 578 PNQQRWWRG*C*ICED*RNRVGMAPDGPQLGPGVAHQL*HEGTTSVV*AQLERWQGADQF 399
PNQQ WR *C I ED RNR+ +A GPQLGP +AHQL ++*A LE W D+F
Sbjct: 533 PNQQCRWRW*CQISEDQRNRLWLARHGPQLGPDMAHQLRSNRAAGIL*AHLE*WHDDDEF 354
Query: 398 QRRP*GLGVWQDIHGEAISSVEN 330
RR GLGVWQ+IH +A+ S+EN
Sbjct: 353 *RRAQGLGVWQNIHRQAVPSLEN 285
Score = 102 bits (217), Expect = 4e-021
Identities = 49/83 (59%), Positives = 52/83 (62%)
Frame = +1 / +1
Query: 331 FSTEEIASPCMSCHTPNP*GRR*NWSAPCHRSS*AQTTEVVPSCHS*CATPGPSCGPSGA 510
FS E A CM C TPNP RR*N S+ CH S *AQ S*CA GPSCGP A
Sbjct: 286 FSREGTACRCMFCQTPNPWARR*NSSSSCHHSR*AQRIPAALLDLS*CAISGPSCGPCRA 465
Query: 511 IPTLFL*SSQI*HHPRHQRC*LG 579
+LFL*SS I*HH RH+ C*LG
Sbjct: 466 SQSLFL*SSLI*HHQRHRHC*LG 534
Score = 22.6 bits (43), Expect(2) = 6e-044
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1 / -2
Query: 208 *CKASDSCS 182
*C+ASDSCS
Sbjct: 120 *CRASDSCS 94
Score = 22.6 bits (43), Expect(2) = 3e-038
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +2
Query: 138 FSTTMKGTWKTIYDQEQLSEALH* 209
F + +K + EQLSEALH*
Sbjct: 50 FENSTSDNYKRM*YVEQLSEALH* 121
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 178 bits (383), Expect = 6e-044
Identities = 65/145 (44%), Positives = 96/145 (66%)
Frame = -1 / -3
Query: 790 TNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRF 611
TNFC PN+ LP++ GG CNPP HF + ++ IA+++AGI+P+ Y+RV C + G+RF
Sbjct: 530 TNFCPPNWALPSNNGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRF 351
Query: 610 SVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFEL 431
++GR +F V+++NVGG+G V + IKG+ WL M RNWG W N + GQ LSF +
Sbjct: 350 GISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAMSRNWGANWQSNAYLNGQRLSFRV 171
Query: 430 SSSDGKALTSFNVVPKDWEYGKTYT 356
DG+ T+ +V P +W +G TY+
Sbjct: 170 RLDDGREATASDVAPSNWWFGATYS 96
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 144 bits (310), Expect(3) = 6e-044
Identities = 54/96 (56%), Positives = 73/96 (76%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
S VVTATNFC PN+G +DAGG CNPP HF + F++IAL++AGI+P+ YRRV C +
Sbjct: 102 STVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQK 281
Query: 628 EGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
+GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 282 KGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 389
Score = 38.2 bits (77), Expect(3) = 6e-044
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1 / +3
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSS 425
W + RNWGQ W N + GQ LSF +++
Sbjct: 402 WQALSRNWGQNWQSNALLDGQGLSFRVTA 488
Score = 33.6 bits (67), Expect(3) = 6e-044
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 892 ALFERGAACGGCYEVKC 842
ALF G +CG C+EV+C
Sbjct: 3 ALFNNGLSCGACFEVRC 53
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 148 bits (317), Expect(2) = 7e-044
Identities = 54/104 (51%), Positives = 75/104 (72%)
Frame = -1 / +2
Query: 670 GIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRN 491
GI+P+ Y+RV C ++GGVRF+VNG +F VL+SNVG G +RSV IKG+ GW+PM RN
Sbjct: 86 GIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSRTGWMPMSRN 265
Query: 490 WGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTY 359
WG W N + GQ LSF+++S+DG+ +T NV P W +G+T+
Sbjct: 266 WGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
Score = 50.1 bits (103), Expect(2) = 7e-044
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1 / +2
Query: 829 KYCLPGTSIVVTATNFCAPNYGLPADAGG 743
++C+ G S+ +TATN C PNY LP D GG
Sbjct: 2 RFCIRGASVTITATNLCPPNYALPNDDGG 88
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 166 bits (357), Expect = 2e-040
Identities = 64/132 (48%), Positives = 88/132 (66%)
Frame = -1 / +1
Query: 739 CNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVG 560
CNPP HF + +F I ++AGI+P+ YRRV C+++GG+RF++NG +F VL++NV
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 559 GAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKD 380
GAGD RSV IKGT GW M RNWG W + GQ LSF ++SSDG+ +TS P
Sbjct: 181 GAGDARSVSIKGTRTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAG 360
Query: 379 WEYGKTYTGKQF 344
W++ +T+ G QF
Sbjct: 361 WQFRQTF*GAQF 396
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 163 bits (350), Expect = 2e-039
Identities = 61/119 (51%), Positives = 84/119 (70%)
Frame = -1 / +2
Query: 700 SFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
+F IA ++AGI+P+ YRRV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT
Sbjct: 14 AFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGT 193
Query: 520 ELGWLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
GW M RNWG W N + GQ LSF ++SSDG+ +TS P W++G+T+ G QF
Sbjct: 194 RTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 370
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 110 bits (234), Expect(2) = 3e-039
Identities = 38/74 (51%), Positives = 55/74 (74%)
Frame = -1 / +2
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YRRV C++
Sbjct: 212 SITITATNLCPPNYALPNDDGGWCNPPRAHFXMAEPAYLQIGIYRAGIVPVSYRRVPCVK 391
Query: 628 EGGVRFSVNGRHFF 587
+GG+RF++NG +F
Sbjct: 392 KGGMRFTMNGHAYF 433
Score = 72.5 bits (152), Expect(2) = 3e-039
Identities = 28/50 (56%), Positives = 32/50 (64%)
Frame = -1 / +2
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CY +KC
Sbjct: 38 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGWCYXLKC 187
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 133 bits (285), Expect(2) = 8e-039
Identities = 48/89 (53%), Positives = 67/89 (75%)
Frame = -1 / +2
Query: 787 NFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFS 608
NFC PN+G +DAGG CNPP HF + F++IAL++AGI+P+ YRRV C ++GG+RF+
Sbjct: 17 NFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFT 196
Query: 607 VNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
+NG +F VL++NVGG GDV +V +K T
Sbjct: 197 INGHSYFNLVLVTNVGGPGDVHAVSVKST 283
Score = 47.8 bits (98), Expect(2) = 8e-039
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -1 / +2
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVV 389
W + RNWGQ W N + GQ LSF +++ +G+++ S N V
Sbjct: 296 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAV 418
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 85.8 bits (181), Expect(3) = 1e-038
Identities = 31/54 (57%), Positives = 46/54 (85%)
Frame = -1 / +3
Query: 676 KAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTEL 515
+AGI+P+ YRRV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG++L
Sbjct: 384 RAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKGSKL 545
Score = 76.2 bits (160), Expect(3) = 1e-038
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / +1
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 76 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 225
Score = 36.8 bits (74), Expect(3) = 1e-038
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPAD 752
SI +TATN C PNY LP D
Sbjct: 250 SITITATNLCPPNYALPND 306
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 104 bits (221), Expect(2) = 1e-038
Identities = 35/73 (47%), Positives = 53/73 (72%)
Frame = -1 / +2
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SI +T TN C PNY LP D GG CNPP HF + ++ +I +++AGI+P+ YR+V C++
Sbjct: 374 SITITGTNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRKVPCVK 553
Query: 628 EGGVRFSVNGRHF 590
+GG+RF++NG +
Sbjct: 554 KGGMRFTINGHSY 592
Score = 76.2 bits (160), Expect(2) = 1e-038
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / +2
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 200 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 349
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 106 bits (226), Expect(2) = 3e-038
Identities = 41/68 (60%), Positives = 51/68 (75%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLR 629
SIVVTATNFC PNY LP+D GG CNPP HF L + F +A ++AGI+P+ YRRV C +
Sbjct: 397 SIVVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHMAQYRAGIVPVCYRRVACRK 576
Query: 628 EGGVRFSV 605
GGVRF++
Sbjct: 577 SGGVRFTI 600
Score = 73.0 bits (153), Expect(2) = 3e-038
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = -1 / +1
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCV 839
Y +D +GGACG+G+L GYG+ LSTALF G +CG C+E++CV
Sbjct: 205 YGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGACFEIRCV 357
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 105 bits (223), Expect(2) = 3e-036
Identities = 37/76 (48%), Positives = 52/76 (68%)
Frame = -1 / +1
Query: 829 KYCLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQY 650
K C PGT I V+ATNFC PN+ LP GG CNPP HF + ++ IA+++AGI+P+ Y
Sbjct: 343 KMCRPGTQITVSATNFCPPNWALPRTTGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMY 522
Query: 649 RRVKCLREGGVRFSVN 602
+RV C + G+RF ++
Sbjct: 523 KRVSCQKRDGIRFGIS 570
Score = 67.5 bits (141), Expect(2) = 3e-036
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = -1 / +1
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y AD +GGACG+G+L GYG+ LSTALF GA CG CY + C
Sbjct: 178 YGGADGSGTMGGACGYGNLYGSGYGINNAALSTALFNDGAMCGACYIIYC 327
>gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O14
5-PRIME, mRNA sequence
Length = 443
Score = 102 bits (217), Expect(2) = 6e-036
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = -1 / +2
Query: 823 CLPGTSIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRR 644
C PG ++ +TATN C +Y P D GG CNPP H + ++E+I +++AGI+P+ ++R
Sbjct: 212 CKPGVTVTITATNLCPTDYSKPNDNGGWCNPPRKHLDMAQPAWERIGIYRAGIVPVLFQR 391
Query: 643 VKCLREGGVRFSVNG 599
V C R GGVRF++NG
Sbjct: 392 VPCSRSGGVRFTING 436
Score = 69.3 bits (145), Expect(2) = 6e-036
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = -1 / +2
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y ++ +GGACG+G+L GYG T LST+LF GAACG CY+V+C
Sbjct: 41 YGGSNAAGTMGGACGYGNLYATGYGTNTAALSTSLFNDGAACGECYQVQC 190
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 146 bits (313), Expect = 3e-034
Identities = 54/103 (52%), Positives = 73/103 (70%)
Frame = -1 / +1
Query: 652 YRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWH 473
Y RV C+++GG+RF++NG +F VL++NV GAGDV+SV IKG+ GW M RNWGQ W
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQ 186
Query: 472 INCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
N D+ GQ LSF ++ SDG+ +TS N P W +G+T+ G QF
Sbjct: 187 SNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 315
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 91.8 bits (194), Expect(2) = 9e-034
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = -1 / +2
Query: 697 FEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
F++IAL++AGI+P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 178
Score = 72.5 bits (152), Expect(2) = 9e-034
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -1 / +2
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
W + RNWGQ W N + GQ LSF +++ +G+++ S N VP+ W +G+T++G QF
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 91.8 bits (194), Expect(2) = 9e-034
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = -1 / +2
Query: 697 FEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGT 521
F++IAL++AGI+P+ YRRV C ++GG+RF++NG +F VL++NVGG GDV +V +K T
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKST 178
Score = 72.5 bits (152), Expect(2) = 9e-034
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -1 / +2
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
W + RNWGQ W N + GQ LSF +++ +G+++ S N VP+ W +G+T++G QF
Sbjct: 191 WQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 81.3 bits (171), Expect(2) = 4e-033
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPI 656
SI+VTATNFC PNYGLP+D GG CNPP HF + +F IA ++AGI+P+
Sbjct: 366 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPV 518
Score = 80.8 bits (170), Expect(2) = 4e-033
Identities = 32/64 (50%), Positives = 39/64 (60%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y D +GGACG+G+L GYG T LSTALF GAACG CYE++C C PG
Sbjct: 186 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRPG 365
Query: 811 TSIV 800
+ +V
Sbjct: 366 SIMV 377
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 84.5 bits (178), Expect(2) = 6e-033
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = -1 / +3
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRR 644
SI+VTATNFC PNYGLP+D GG CNPP HF + +F IA ++AGI+P YR+
Sbjct: 387 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPCFYRK 551
Score = 77.1 bits (162), Expect(2) = 6e-033
Identities = 31/64 (48%), Positives = 38/64 (59%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVEDLKYCLPG 812
Y D +GGACG+G+L GYG T LSTALF GAACG CYE++C C G
Sbjct: 207 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCRAG 386
Query: 811 TSIV 800
+ +V
Sbjct: 387 SIMV 398
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 65.7 bits (137), Expect(3) = 2e-030
Identities = 26/50 (52%), Positives = 30/50 (60%)
Frame = -1 / +3
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGAC + +L GYG T LSTALF AACG CYE+KC
Sbjct: 204 YGGGDASGTMGGACCYRNLYSTGYGTNTAALSTALFNDSAACGSCYELKC 353
Score = 54.7 bits (113), Expect(3) = 2e-030
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -1 / +1
Query: 784 FCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPI 656
F P Y LP D GG CNPP HF + ++ +I +++AGI+P+
Sbjct: 403 FARPTYALPNDHGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPV 531
Score = 50.6 bits (104), Expect(3) = 2e-030
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = -1 / +2
Query: 661 PIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDV 545
P YRR C+++GG+RF++NG +F L +NV GAG++
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNM 643
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 100 bits (214), Expect(2) = 3e-030
Identities = 37/82 (45%), Positives = 60/82 (73%)
Frame = -1 / +2
Query: 757 ADAGGHCNPPNHHFLLPIQSFEKIALWKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTV 578
+D GG CNPP HF + ++EKI +++ GI+PI Y+RV C+++GGVRF+++G +F V
Sbjct: 2 SDKGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLV 181
Query: 577 LISNVGGAGDVRSVKIKGTELG 512
L +NV AG VR++ ++G++ G
Sbjct: 182 LPTNVAAAGSVRAMDVRGSKSG 247
Score = 51.5 bits (106), Expect(2) = 3e-030
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1 / +2
Query: 511 WLPMGRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWE 374
W+ M NWG WH + GQ LSF ++ +DG+ L +VVP+ E
Sbjct: 251 WMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVPRHLE 388
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 132 bits (282), Expect = 5e-030
Identities = 49/96 (51%), Positives = 66/96 (68%)
Frame = -1 / -3
Query: 631 REGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHINCDMRG 452
++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNWG W N + G
Sbjct: 699 KKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDG 520
Query: 451 QPLSFELSSSDGKALTSFNVVPKDWEYGKTYTGKQF 344
Q LSF ++SSDG+ +TS P W++G+T+ G QF
Sbjct: 519 QCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 412
>gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06A13u 3', mRNA sequence
Length = 523
Score = 130 bits (278), Expect = 2e-029
Identities = 47/108 (43%), Positives = 71/108 (65%)
Frame = -1 / -2
Query: 679 WKAGIMPIQYRRVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPM 500
++AGI+P+ Y+RV C + G+RF ++GR +F V+++NVGG+G V + IKG+ WL M
Sbjct: 522 YQAGIVPVMYKRVSCQKRDGIRFGISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAM 343
Query: 499 GRNWGQVWHINCDMRGQPLSFELSSSDGKALTSFNVVPKDWEYGKTYT 356
RNWG W N + GQ LSF + DG+ T+ +V P +W +G TY+
Sbjct: 342 SRNWGANWQSNAYLNGQRLSFRVRLDDGREATASDVAPSNWWFGATYS 199
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 129 bits (276), Expect = 3e-029
Identities = 48/93 (51%), Positives = 64/93 (68%)
Frame = -1 / +2
Query: 646 RVKCLREGGVRFSVNGRHFFFTVLISNVGGAGDVRSVKIKGTELGWLPMGRNWGQVWHIN 467
RV C+++GG+RF++NG +F VL++NV GAGD RSV IKGT GW M RNWG W N
Sbjct: 257 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSN 436
Query: 466 CDMRGQPLSFELSSSDGKALTSFNVVPKDWEYG 368
+ GQ LSF ++SSDG+ +TS P W++G
Sbjct: 437 TFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFG 535
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 76.2 bits (160), Expect(2) = 3e-027
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / +1
Query: 991 YYAADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC 842
Y D +GGACG+G+L GYG T LSTALF GAACG CYE+KC
Sbjct: 178 YGGGDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGAACGSCYELKC 327
Score = 66.1 bits (138), Expect(2) = 3e-027
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = -1 / +1
Query: 808 SIVVTATNFCAPNYGLPADAGGHCNPPNHHFLLPIQSFEKIALWKAG 668
SI +TATN C PNY LP D GG CNPP HF + ++ +I +++AG
Sbjct: 352 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAG 492
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 496,304,094
Number of Sequences: 312970
Number of extensions: 8065051
Number of successful extensions: 57246
Number of sequences better than 1.0e-020: 80
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14041698384
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)