TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedl... 166 3e-047
gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA li... 166 3e-047
gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachi... 166 3e-047
gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA li... 166 3e-047
gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. v... 166 3e-047
gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. v... 166 3e-047
gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedl... 162 5e-046
gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachi... 160 2e-045
gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachi... 159 7e-045
gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedl... 157 2e-044
gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedl... 172 1e-042
gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachi... 169 1e-041
gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA li... 169 1e-041
gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedl... 166 7e-041
gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. v... 165 3e-040
gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hyd... 151 8e-040
gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedl... 162 2e-039
gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedl... 161 3e-039
gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. v... 156 8e-038
gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachi... 153 7e-037
gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedl... 127 1e-035
gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. v... 147 5e-035
gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachi... 127 1e-034
gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedl... 127 2e-033
gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachi... 127 2e-033
gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachi... 127 2e-033
gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. v... 127 2e-033
gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. v... 127 2e-033
gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. v... 127 2e-033
gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. v... 127 2e-033
gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. v... 125 1e-032
gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA li... 125 9e-032
gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedl... 123 3e-031
gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. v... 123 3e-031
gb|BQ660910.1|BQ660910 HM01A23w HM Hordeum vulgare subsp. v... 123 3e-031
gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. v... 113 3e-031
gb|BU977318.1|BU977318 HA11D12u HA Hordeum vulgare subsp. v... 123 2e-030
gb|AV929789.1|AV929789 AV929789 K. Sato unpublished cDNA li... 123 2e-029
gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedl... 105 5e-029
gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hyd... 104 5e-029
gb|BQ661501.1|BQ661501 HM03L08u HM Hordeum vulgare subsp. v... 123 7e-028
gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots... 101 8e-028
gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedl... 101 8e-028
gb|AV924692.1|AV924692 AV924692 K. Sato unpublished cDNA li... 123 9e-028
gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedl... 100 1e-027
gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa... 111 2e-027
gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. v... 122 2e-027
gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachi... 100 3e-027
gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots... 121 5e-027
gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots... 121 5e-027
gb|BF256995.2|BF256995 HVSMEf0011J05f Hordeum vulgare seedl... 101 5e-027
gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hyd... 120 9e-027
gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedl... 98 1e-026
gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedl... 98 1e-026
gb|CA016710.1|CA016710 HV06L01u HV Hordeum vulgare subsp. v... 117 4e-026
gb|BF065240.1|BF065240 HV_CEb0024I11f Hordeum vulgare seedl... 94 5e-026
gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. v... 117 6e-026
gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedl... 95 6e-026
gb|CA007423.1|CA007423 HU07O17r HU Hordeum vulgare subsp. v... 105 9e-026
gb|AL502956.1|AL502956 AL502956 Hordeum vulgare Barke roots... 114 2e-025
gb|CA016634.1|CA016634 HV08B21u HV Hordeum vulgare subsp. v... 115 3e-025
gb|AL503230.1|AL503230 AL503230 Hordeum vulgare Barke roots... 110 9e-024
gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA li... 109 2e-023
gb|BF625981.2|BF625981 HVSMEa0015B13f Hordeum vulgare seedl... 73 2e-023
gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA li... 94 2e-023
gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, dro... 86 3e-023
gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachi... 80 2e-021
gb|BF259949.2|BF259949 HVSMEf0020L06f Hordeum vulgare seedl... 87 4e-021
gb|BQ662142.1|BQ662142 HR01L16u HR Hordeum vulgare subsp. v... 100 7e-021
>gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013N02f, mRNA sequence
Length = 756
Score = 166 bits (358), Expect(2) = 3e-047
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 254 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 433
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 434 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 556
Score = 104 bits (222), Expect(2) = 9e-026
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / -1
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 552 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 373
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 372 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 253
Score = 41.4 bits (84), Expect(2) = 3e-047
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 192 PAWRTRWTSARAPAWSAWRS 251
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -3
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 253 ELLQALQAGALAEVHLVRHAGLL 185
>gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35l16 3', mRNA sequence
Length = 705
Score = 166 bits (358), Expect(2) = 3e-047
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / -3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 535 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 356
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 355 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 233
Score = 104 bits (222), Expect(2) = 9e-026
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / +3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 237 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 416
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 417 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 536
Score = 41.4 bits (84), Expect(2) = 3e-047
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / -1
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 597 PAWRTRWTSARAPAWSAWRS 538
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / +2
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 536 ELLQALQAGALAEVHLVRHAGLL 604
>gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009J18f, mRNA sequence
Length = 667
Score = 166 bits (358), Expect(2) = 3e-047
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 247 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 426
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 427 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 549
Score = 104 bits (222), Expect(2) = 9e-026
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / -3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 545 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 366
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 365 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 246
Score = 41.4 bits (84), Expect(2) = 3e-047
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +2
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 185 PAWRTRWTSARAPAWSAWRS 244
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -2
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 246 ELLQALQAGALAEVHLVRHAGLL 178
>gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37h18 3', mRNA sequence
Length = 630
Score = 166 bits (358), Expect(2) = 3e-047
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 561 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 382
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 381 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 259
Score = 104 bits (222), Expect(2) = 9e-026
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / +2
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 263 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 442
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 443 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 562
Score = 41.4 bits (84), Expect(2) = 3e-047
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / -2
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 623 PAWRTRWTSARAPAWSAWRS 564
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / +1
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 562 ELLQALQAGALAEVHLVRHAGLL 630
>gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. vulgare cDNA clone HP08E22
5-PRIME, mRNA sequence
Length = 581
Score = 166 bits (358), Expect(2) = 3e-047
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 239 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 418
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 419 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 541
Score = 104 bits (222), Expect(2) = 9e-026
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / -3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 537 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 358
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 357 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 238
Score = 41.4 bits (84), Expect(2) = 3e-047
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 177 PAWRTRWTSARAPAWSAWRS 236
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -2
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 238 ELLQALQAGALAEVHLVRHAGLL 170
>gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. vulgare cDNA clone HV05N12
3-PRIME, mRNA sequence
Length = 544
Score = 166 bits (358), Expect(2) = 3e-047
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 475 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 296
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 295 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 173
Score = 104 bits (222), Expect(2) = 9e-026
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / +3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 177 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 356
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 357 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 476
Score = 41.4 bits (84), Expect(2) = 3e-047
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / -2
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 537 PAWRTRWTSARAPAWSAWRS 478
Score = 31.8 bits (63), Expect(2) = 9e-026
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / +2
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 476 ELLQALQAGALAEVHLVRHAGLL 544
>gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D09f, mRNA sequence
Length = 518
Score = 162 bits (349), Expect(2) = 5e-046
Identities = 68/101 (67%), Positives = 77/101 (76%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 214 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 393
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIAD VTICRRVV*
Sbjct: 394 LDTRFSAALRDLNAKLAADPRIEVCQLAIADCVTICRRVV* 516
Score = 100 bits (214), Expect(2) = 1e-024
Identities = 55/100 (55%), Positives = 56/100 (56%)
Frame = +2 / -1
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVT SAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 512 TTRRQMVTQSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 333
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 332 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 213
Score = 41.4 bits (84), Expect(2) = 5e-046
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +2
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 152 PAWRTRWTSARAPAWSAWRS 211
Score = 31.8 bits (63), Expect(2) = 1e-024
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -3
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 213 ELLQALQAGALAEVHLVRHAGLL 145
>gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016H12f, mRNA sequence
Length = 676
Score = 160 bits (345), Expect(2) = 2e-045
Identities = 66/99 (66%), Positives = 75/99 (75%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 173 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 352
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
LD RFSAA+R+LN +L+ DPR+EVCQLAIAD VTICRRV
Sbjct: 353 LDTRFSAALRDLNAKLAADPRIEVCQLAIADRVTICRRV 469
Score = 98.2 bits (208), Expect(2) = 7e-024
Identities = 54/99 (54%), Positives = 55/99 (55%)
Frame = +2 / -2
Query: 251 TRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSYX 430
TRRQMVT SAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 468 TRRQMVTRSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS*M 289
Query: 431 XXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 288 MVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 172
Score = 41.4 bits (84), Expect(2) = 2e-045
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 111 PAWRTRWTSARAPAWSAWRS 170
Score = 31.8 bits (63), Expect(2) = 7e-024
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -1
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 172 ELLQALQAGALAEVHLVRHAGLL 104
>gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O22f, mRNA sequence
Length = 629
Score = 159 bits (341), Expect(2) = 7e-045
Identities = 67/101 (66%), Positives = 76/101 (75%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNY R HEQ +YDNTLW GTVALP PLSD
Sbjct: 83 LAEDDGAASYDFAFVDADKPNYGRGHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 262
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 263 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 385
Score = 102 bits (217), Expect(2) = 4e-025
Identities = 55/100 (55%), Positives = 56/100 (56%)
Frame = +2 / -3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 381 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 202
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW R *LGLSAST AKS + SAR
Sbjct: 201 MMVPPTRTSRSSCSWPRP*LGLSASTNAKS*LAAPSSSAR 82
Score = 41.4 bits (84), Expect(2) = 7e-045
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 21 PAWRTRWTSARAPAWSAWRS 80
Score = 31.8 bits (63), Expect(2) = 4e-025
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -2
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 82 ELLQALQAGALAEVHLVRHAGLL 14
>gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022G03f, mRNA sequence
Length = 816
Score = 157 bits (338), Expect(2) = 2e-044
Identities = 67/101 (66%), Positives = 74/101 (73%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP LSD
Sbjct: 476 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTXLSD 655
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN + DPR EVCQLAIADGVTICRRVV*
Sbjct: 656 LDTRFSAALRDLNAKARXDPRXEVCQLAIADGVTICRRVV* 778
Score = 103 bits (220), Expect(2) = 2e-025
Identities = 56/100 (56%), Positives = 58/100 (58%)
Frame = +2 / -1
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS + L SL AAE TVP SVLS
Sbjct: 774 TTRRQMVTPSAMASWQTSMRGSXRALALRSLRAAEKRVSRSDKXVPAGSATVPPQSVLS* 595
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 594 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 475
Score = 41.4 bits (84), Expect(2) = 2e-044
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 414 PAWRTRWTSARAPAWSAWRS 473
Score = 31.8 bits (63), Expect(2) = 2e-025
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / -3
Query: 548 KLVQLFQGGALPEGHLARHPGAL 616
+L+Q Q GAL E HL RH G L
Sbjct: 475 ELLQALQAGALAEVHLVRHAGLL 407
>gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020A16f, mRNA sequence
Length = 816
Score = 172 bits (371), Expect = 1e-042
Identities = 73/116 (62%), Positives = 82/116 (70%)
Frame = -3 / -3
Query: 591 WPSGRAPPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTL 412
W S RA LA+ ++DFAFVDADKPNYVRYHEQ +YDNTL
Sbjct: 622 WTSARAXGLERLEELLAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTL 443
Query: 411 WAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
W GTVALP PLSDLD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 442 WGGTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 275
Score = 110 bits (235), Expect = 7e-024
Identities = 61/119 (51%), Positives = 64/119 (53%)
Frame = +2 / +3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 279 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 458
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSARKLVQLFQGGALPEGHLARH 604
SSCSW RT*LGLSAST AKS + SAR + + AL E H H
Sbjct: 459 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSARSSSRRSRPXALAEVHXVPH 635
>gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014P16f, mRNA sequence
Length = 660
Score = 169 bits (364), Expect = 1e-041
Identities = 70/109 (64%), Positives = 81/109 (74%)
Frame = -3 / -1
Query: 570 PWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVAL 391
PW++ S + ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVAL
Sbjct: 585 PWSA*RSSSPEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVAL 406
Query: 390 PPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
P PLSDLD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 405 PAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 259
Score = 111 bits (236), Expect = 5e-024
Identities = 59/112 (52%), Positives = 62/112 (55%)
Frame = +2 / +2
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 263 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 442
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSARKLVQLFQGGALP 583
SSCSW RT*LGLSAST AKS + S +L+Q QG P
Sbjct: 443 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSGEELLQALQGRCPP 598
>gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37h18 5', mRNA sequence
Length = 573
Score = 169 bits (364), Expect = 1e-041
Identities = 72/119 (60%), Positives = 81/119 (68%)
Frame = -3 / +2
Query: 600 RARWPSGRAPPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYD 421
R RW LA+ ++DFAFVDADKPNYVRYHEQ +YD
Sbjct: 11 RTRWXFREGTGLERLEELLAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYD 190
Query: 420 NTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
NTLW GTVALP PLSDLD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 191 NTLWGGTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 367
Score = 104 bits (222), Expect = 4e-022
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / -1
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 363 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 184
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 183 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 64
>gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012D15f, mRNA sequence
Length = 830
Score = 166 bits (358), Expect = 7e-041
Identities = 69/101 (68%), Positives = 78/101 (77%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 27 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 206
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 207 LDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 329
Score = 104 bits (222), Expect = 4e-022
Identities = 56/100 (56%), Positives = 57/100 (57%)
Frame = +2 / -2
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 325 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 146
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST AKS + SAR
Sbjct: 145 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS*LAAPSSSAR 26
>gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. vulgare cDNA clone HP08H09
5-PRIME, mRNA sequence
Length = 478
Score = 165 bits (354), Expect = 3e-040
Identities = 68/100 (68%), Positives = 77/100 (77%)
Frame = -3 / +1
Query: 543 ADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDL 364
A+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSDL
Sbjct: 10 AEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSDL 189
Query: 363 DRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
D RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 190 DTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV* 309
Score = 102 bits (217), Expect = 2e-021
Identities = 53/90 (58%), Positives = 53/90 (58%)
Frame = +2 / -3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 305 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 126
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKS 517
SSCSW RT*LGLSAST AKS
Sbjct: 125 MMVPPTRTSRSSCSW*RT*LGLSASTNAKS 36
>gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_D18 5', mRNA sequence
Length = 540
Score = 151 bits (324), Expect(2) = 8e-040
Identities = 61/96 (63%), Positives = 70/96 (72%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 253 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 432
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTIC 259
LD RFS +R+LN +L+ DPR+E CQLAIADGVTIC
Sbjct: 433 LDTRFSGGLRDLNAKLAADPRIEGCQLAIADGVTIC 540
Score = 32.2 bits (64), Expect(2) = 8e-040
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 603 WRARWPSGRAPPWNSWTS 550
WR R S RAP W++W S
Sbjct: 197 WRTRGTSARAPAWSAWRS 250
>gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005D24f, mRNA sequence
Length = 541
Score = 162 bits (348), Expect = 2e-039
Identities = 67/91 (73%), Positives = 73/91 (80%)
Frame = -3 / +2
Query: 516 DFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIR 337
DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSDLD RFSAA+R
Sbjct: 2 DFAFVDADKPNYVRYHEQLLRVVRVGGTIIYDNTLWGGTVALPAGTPLSDLDTRFSAALR 181
Query: 336 ELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+LN +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 182 DLNAKLAADPRIEVCQLAIADGVTICRRVV* 274
Score = 102 bits (217), Expect(2) = 1e-021
Identities = 53/90 (58%), Positives = 53/90 (58%)
Frame = +2 / -2
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 270 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 91
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKS 517
SSCSW RT*LGLSAST AKS
Sbjct: 90 MMVPPTRTTRSSCSW*RT*LGLSASTNAKS 1
Score = 21.7 bits (41), Expect(2) = 1e-021
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2 / -2
Query: 2 FFFFFFCTH 28
FFFFFF H
Sbjct: 540 FFFFFFSWH 514
>gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001L07f, mRNA sequence
Length = 960
Score = 161 bits (346), Expect = 3e-039
Identities = 70/122 (57%), Positives = 80/122 (65%)
Frame = -3 / -3
Query: 609 PGWRARWPSGRAPPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXX 430
PG + P L + ++DFAFVDADKPNYVRYHEQ
Sbjct: 640 PGMAHKVDFREGPGLERLEELLPEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGPI 461
Query: 429 VYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
+YDNTLW GTVALP PLSDLD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTIC RV
Sbjct: 460 IYDNTLWGGTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICPRV 281
Query: 249 V* 244
V*
Sbjct: 280 V* 275
Score = 101 bits (216), Expect = 3e-021
Identities = 58/121 (47%), Positives = 62/121 (51%)
Frame = +2 / +3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTR QMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 279 TTRGQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 458
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSARKLVQLFQGGALPEGHLARHP 607
SSCSW RT*LGLSAST AKS + S R + + G + L P
Sbjct: 459 MMGPPTRTNRSSCSW*RT*LGLSASTNAKS*LAAPSSSGRSSSRRSRPGPSRKSTLCAMP 638
Query: 608 G 610
G
Sbjct: 639 G 641
>gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. vulgare cDNA clone HV06J09
3-PRIME, mRNA sequence
Length = 496
Score = 156 bits (336), Expect = 8e-038
Identities = 65/89 (73%), Positives = 71/89 (79%)
Frame = -3 / -1
Query: 510 AFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIREL 331
AFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSDLD RFSAA+R+L
Sbjct: 496 AFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSDLDTRFSAALRDL 317
Query: 330 NVRLSQDPRVEVCQLAIADGVTICRRVV* 244
N +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 316 NAKLAADPRIEVCQLAIADGVTICRRVV* 230
>gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023A12f, mRNA sequence
Length = 639
Score = 153 bits (329), Expect = 7e-037
Identities = 64/89 (71%), Positives = 70/89 (78%)
Frame = -3 / -3
Query: 510 AFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIREL 331
A VDADKPNYVRYHEQ +YDNTLW GTVALP PLSDLD RFSAA+R+L
Sbjct: 529 AVVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSDLDTRFSAALRDL 350
Query: 330 NVRLSQDPRVEVCQLAIADGVTICRRVV* 244
N +L+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 349 NAKLAADPRIEVCQLAIADGVTICRRVV* 263
Score = 100 bits (214), Expect = 5e-021
Identities = 55/100 (55%), Positives = 55/100 (55%)
Frame = +2 / +3
Query: 248 TTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSY 427
TTRRQMVTPSAMASWQTS RGS S L SL AAE TVP SVLS
Sbjct: 267 TTRRQMVTPSAMASWQTSMRGSAASLALRSLRAAEKRVSRSDKGVPAGSATVPPQSVLS* 446
Query: 428 XXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSAR 547
SSCSW RT*LGLSAST A A G AR
Sbjct: 447 MMVPPTRTSRSSCSW*RT*LGLSASTTAPLLASTHTGHAR 566
>gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018K06f, mRNA sequence
Length = 749
Score = 127 bits (273), Expect(2) = 1e-035
Identities = 52/87 (59%), Positives = 61/87 (70%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 489 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 668
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQL 286
LD RF A +R+LN +L+ DP +EVCQL
Sbjct: 669 LDTRFFAGLRDLNAKLAADPCMEVCQL 749
Score = 41.4 bits (84), Expect(2) = 1e-035
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 427 PAWRTRWTSARAPAWSAWRS 486
>gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. vulgare cDNA clone HR01B07
3-PRIME, mRNA sequence
Length = 502
Score = 147 bits (316), Expect = 5e-035
Identities = 61/85 (71%), Positives = 67/85 (78%)
Frame = -3 / -1
Query: 498 ADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRL 319
ADKPNYVRYHEQ +YDNTLW GTVALP PLSDLD RFSAA+R+LN +L
Sbjct: 502 ADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSDLDTRFSAALRDLNAKL 323
Query: 318 SQDPRVEVCQLAIADGVTICRRVV* 244
+ DPR+EVCQLAIADGVTICRRVV*
Sbjct: 322 AADPRIEVCQLAIADGVTICRRVV* 248
>gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F23f, mRNA sequence
Length = 654
Score = 127 bits (271), Expect(3) = 1e-034
Identities = 51/83 (61%), Positives = 60/83 (72%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 285 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 464
Query: 366 LDRRFSAAIRELNVRLSQDPRVE 298
LD RFSAA+R+LN +L+ DPR+E
Sbjct: 465 LDTRFSAALRDLNAKLAADPRIE 533
Score = 31.8 bits (63), Expect(3) = 1e-034
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3 / +1
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR S RAP W++W S
Sbjct: 223 PAWRTPRTSARAPAWSAWRS 282
Score = 25.4 bits (49), Expect(3) = 1e-034
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 297 VCQLAIADGVTICR 256
VC LAIA+GVT+ R
Sbjct: 535 VCDLAIANGVTMFR 576
>gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019H19f, mRNA sequence
Length = 759
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / +1
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 298 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 477
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 478 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 621
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 235 EKAGVAHKIDFREGPALPVLD 297
>gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E18f, mRNA sequence
Length = 637
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / +2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 236 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 415
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 416 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 559
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 173 EKAGVAHKIDFREGPALPVLD 235
>gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024D19f, mRNA sequence
Length = 591
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / +1
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 76 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 255
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 256 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 399
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 13 EKAGVAHKIDFREGPALPVLD 75
>gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B18
5-PRIME, mRNA sequence
Length = 593
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / +2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 86 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 265
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 266 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 409
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 23 EKAGVAHKIDFREGPALPVLD 85
>gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. vulgare cDNA clone HX08G19
5-PRIME, mRNA sequence
Length = 577
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / -3
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 491 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 312
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 311 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 168
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 554 EKAGVAHKIDFREGPALPVLD 492
>gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. vulgare cDNA clone HI12C04
3-PRIME, mRNA sequence
Length = 552
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / -1
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 471 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 292
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 291 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 148
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 534 EKAGVAHKIDFREGPALPVLD 472
>gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
3-PRIME, mRNA sequence
Length = 549
Score = 127 bits (273), Expect(2) = 2e-033
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = -3 / -2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 473 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 294
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
R + + +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 293 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 150
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / -2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 536 EKAGVAHKIDFREGPALPVLD 474
>gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. vulgare cDNA clone HA15J22
5-PRIME, mRNA sequence
Length = 507
Score = 125 bits (267), Expect(2) = 1e-032
Identities = 51/105 (48%), Positives = 64/105 (60%)
Frame = -3 / +2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 86 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 265
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + +LN L+ D RVE+CQL + DG+T+CRR * D
Sbjct: 266 RKYIRYYRDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TD 400
Score = 34.1 bits (68), Expect(2) = 1e-032
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 23 EKAGVAHKIDFREGPALPVLD 85
>gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g18 3', mRNA sequence
Length = 646
Score = 125 bits (268), Expect(2) = 9e-032
Identities = 53/99 (53%), Positives = 64/99 (64%)
Frame = -3 / -3
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 323 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 144
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
+IR N ++ D RVE QL IADG+T+CRRVV D P
Sbjct: 143 SIRGFNAMIAADARVEPVQLPIADGITLCRRVVYSHDRP 27
Score = 30.9 bits (61), Expect(2) = 9e-032
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2 / -3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGVA KV FREGP LDK
Sbjct: 410 KKAGVAHKVDFREGPAGPILDK 345
>gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021O22f, mRNA sequence
Length = 650
Score = 123 bits (264), Expect(2) = 3e-031
Identities = 52/94 (55%), Positives = 63/94 (67%)
Frame = -3 / +2
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 200 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 379
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N ++ D RVE QL IADG+T+CRRVV*
Sbjct: 380 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV* 481
Score = 30.9 bits (61), Expect(2) = 3e-031
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGVA KV FREGP LDK
Sbjct: 113 KKAGVAHKVDFREGPAGPILDK 178
>gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. vulgare cDNA clone HV14G11
3-PRIME, mRNA sequence
Length = 552
Score = 123 bits (264), Expect(2) = 3e-031
Identities = 52/94 (55%), Positives = 63/94 (67%)
Frame = -3 / -2
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 368 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 189
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N ++ D RVE QL IADG+T+CRRVV*
Sbjct: 188 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV* 87
Score = 30.9 bits (61), Expect(2) = 3e-031
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGVA KV FREGP LDK
Sbjct: 455 KKAGVAHKVDFREGPAGPILDK 390
>gb|BQ660910.1|BQ660910 HM01A23w HM Hordeum vulgare subsp. vulgare cDNA clone HM01A23
3-PRIME, mRNA sequence
Length = 543
Score = 123 bits (264), Expect(2) = 3e-031
Identities = 52/94 (55%), Positives = 63/94 (67%)
Frame = -3 / -2
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 371 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 192
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N ++ D RVE QL IADG+T+CRRVV*
Sbjct: 191 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV* 90
Score = 30.9 bits (61), Expect(2) = 3e-031
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGVA KV FREGP LDK
Sbjct: 458 KKAGVAHKVDFREGPAGPILDK 393
>gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU06B07
5-PRIME, mRNA sequence
Length = 454
Score = 113 bits (241), Expect(2) = 3e-031
Identities = 46/75 (61%), Positives = 53/75 (70%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 228 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 407
Query: 366 LDRRFSAAIRELNVR 322
LD RFSAA+R+LN +
Sbjct: 408 LDTRFSAALRDLNAK 452
Score = 41.4 bits (84), Expect(2) = 3e-031
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 166 PAWRTRWTSARAPAWSAWRS 225
>gb|BU977318.1|BU977318 HA11D12u HA Hordeum vulgare subsp. vulgare cDNA clone HA11D12
3-PRIME, mRNA sequence
Length = 580
Score = 123 bits (264), Expect(2) = 2e-030
Identities = 52/94 (55%), Positives = 63/94 (67%)
Frame = -3 / -2
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 426 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 247
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N ++ D RVE QL IADG+T+CRRVV*
Sbjct: 246 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV* 145
Score = 28.1 bits (55), Expect(2) = 2e-030
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2 / -3
Query: 616 ERAGVAGKVAFREGP 572
++AGVA KV FREGP
Sbjct: 515 KKAGVAHKVDFREGP 471
>gb|AV929789.1|AV929789 AV929789 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16j09 3', mRNA sequence
Length = 470
Score = 123 bits (264), Expect(2) = 2e-029
Identities = 53/94 (56%), Positives = 64/94 (68%)
Frame = -3 / -2
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 394 GSFDFAFVDADKYNYGSYHEQLLRLVRVXGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 215
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N ++ D RVE QL IADG+T+CRRVV*
Sbjct: 214 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV* 113
Score = 24.9 bits (48), Expect(2) = 2e-029
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2 / -2
Query: 604 VAGKVAFREGPPLEQLDK 551
VA KV FREGP LDK
Sbjct: 469 VAHKVDFREGPAGPILDK 416
>gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003H21f, mRNA sequence
Length = 694
Score = 105 bits (225), Expect(2) = 5e-029
Identities = 43/73 (58%), Positives = 49/73 (67%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PL D
Sbjct: 474 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLVD 653
Query: 366 LDRRFSAAIRELN 328
LD RFS +R+LN
Sbjct: 654 LDTRFSGGLRDLN 692
Score = 41.4 bits (84), Expect(2) = 5e-029
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 412 PAWRTRWTSARAPAWSAWRS 471
>gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_F11 5', mRNA sequence
Length = 664
Score = 104 bits (222), Expect(3) = 5e-029
Identities = 43/91 (47%), Positives = 54/91 (59%)
Frame = -3 / +3
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ L D AN G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 243 ALLEDEANHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPM 422
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAI 280
R + + +LN L+ D RVE+CQL +
Sbjct: 423 RKYIRYYRDFVLDLNKALAADQRVEICQLPV 515
Score = 34.1 bits (68), Expect(3) = 5e-029
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 180 EKAGVAHKIDFREGPALPVLD 242
Score = 26.3 bits (51), Expect(3) = 5e-029
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3 / +1
Query: 276 DGVTICRRVV*CDDDP 229
DG+T+CRR * D P
Sbjct: 520 DGITLCRRAK*TDPSP 567
>gb|BQ661501.1|BQ661501 HM03L08u HM Hordeum vulgare subsp. vulgare cDNA clone HM03L08
3-PRIME, mRNA sequence
Length = 486
Score = 123 bits (264), Expect = 7e-028
Identities = 52/94 (55%), Positives = 63/94 (67%)
Frame = -3 / -1
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 426 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 247
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N ++ D RVE QL IADG+T+CRRVV*
Sbjct: 246 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV* 145
>gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24T 5', mRNA sequence
Length = 700
Score = 101 bits (216), Expect(2) = 8e-028
Identities = 42/67 (62%), Positives = 46/67 (68%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 497 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 676
Query: 366 LDRRFSA 346
LD RFSA
Sbjct: 677 LDTRFSA 697
Score = 41.4 bits (84), Expect(2) = 8e-028
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 435 PAWRTRWTSARAPAWSAWRS 494
>gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010K05f, mRNA sequence
Length = 697
Score = 101 bits (216), Expect(2) = 8e-028
Identities = 42/67 (62%), Positives = 46/67 (68%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PLSD
Sbjct: 497 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLSD 676
Query: 366 LDRRFSA 346
LD RFSA
Sbjct: 677 LDTRFSA 697
Score = 41.4 bits (84), Expect(2) = 8e-028
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 435 PAWRTRWTSARAPAWSAWRS 494
>gb|AV924692.1|AV924692 AV924692 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16j09 5', mRNA sequence
Length = 328
Score = 123 bits (263), Expect = 9e-028
Identities = 51/93 (54%), Positives = 62/93 (66%)
Frame = -3 / +3
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 12 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 191
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
+IR N ++ D RVE QL IADG+T+CRRVV
Sbjct: 192 SIRGFNAMIAADARVEPVQLPIADGITLCRRVV 290
>gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009A08f, mRNA sequence
Length = 804
Score = 100 bits (214), Expect(2) = 1e-027
Identities = 41/70 (58%), Positives = 47/70 (67%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP PL D
Sbjct: 504 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGTPLFD 683
Query: 366 LDRRFSAAIR 337
LD RFSA ++
Sbjct: 684 LDTRFSAGLK 713
Score = 41.4 bits (84), Expect(2) = 1e-027
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 442 PAWRTRWTSARAPAWSAWRS 501
>gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006I14f, mRNA sequence
Length = 634
Score = 111 bits (236), Expect(2) = 2e-027
Identities = 48/94 (51%), Positives = 58/94 (61%)
Frame = -3 / +2
Query: 525 GAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSA 346
G+FDFAFVDADK NY YHEQ YDNTLW GTV++P D PL++ DR+
Sbjct: 176 GSFDFAFVDADKYNYGSYHEQLLRLVRVGGVLAYDNTLWGGTVSMPDDTPLTEEDRKKRD 355
Query: 345 AIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+IR N + DPRVE I DG+T+ RVV*
Sbjct: 356 SIRGFNALIPADPRVEPVHXPIVDGLTLLPRVV* 457
Score = 30.9 bits (61), Expect(2) = 2e-027
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGVA KV FREGP LDK
Sbjct: 89 KKAGVAHKVDFREGPAGPILDK 154
>gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. vulgare cDNA clone HM06H04
3-PRIME, mRNA sequence
Length = 492
Score = 122 bits (260), Expect = 2e-027
Identities = 49/101 (48%), Positives = 61/101 (60%)
Frame = -3 / -1
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+ R +
Sbjct: 492 NHGTFDFVFVDADKDNYLNYHERLMKLVKVGGLLGYDNTLWNGSVVLPADAPMRKYIRYY 313
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CDDDP 229
+ +LN L+ D RVE+CQL + DG+T+CRR * D P
Sbjct: 312 RDFVLDLNKALAADQRVEICQLPVGDGITLCRRAK*TDPSP 190
>gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023I06f, mRNA sequence
Length = 630
Score = 100 bits (212), Expect(2) = 3e-027
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
LA+ ++DFAFVDADKPNYVRYHEQ +YDNTLW GTVALP APL
Sbjct: 371 LAEDDGAASYDFAFVDADKPNYVRYHEQLLRLVRVGGTIIYDNTLWGGTVALPAGAPLFH 550
Query: 366 LDRRFSAAIREL 331
+ RFSAA+R+L
Sbjct: 551 PNTRFSAALRDL 586
Score = 41.4 bits (84), Expect(2) = 3e-027
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWTS 550
P WR RW S RAP W++W S
Sbjct: 309 PAWRTRWTSARAPAWSAWRS 368
>gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24u 3', mRNA sequence
Length = 439
Score = 121 bits (258), Expect = 5e-027
Identities = 49/61 (80%), Positives = 54/61 (88%)
Frame = -3 / -3
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLW GTVALP PLSDLD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV
Sbjct: 395 YDNTLWGGTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV 216
Query: 246 * 244
*
Sbjct: 215 * 213
>gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01G24u 3', mRNA sequence
Length = 461
Score = 121 bits (258), Expect = 5e-027
Identities = 49/61 (80%), Positives = 54/61 (88%)
Frame = -3 / -2
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLW GTVALP PLSDLD RFSAA+R+LN +L+ DPR+EVCQLAIADGVTICRRVV
Sbjct: 448 YDNTLWGGTVALPAGTPLSDLDTRFSAALRDLNAKLAADPRIEVCQLAIADGVTICRRVV 269
Query: 246 * 244
*
Sbjct: 268 * 266
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 248,740,559
Number of Sequences: 312970
Number of extensions: 3422543
Number of successful extensions: 135933
Number of sequences better than 1.0e-020: 96
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6532173186
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)