TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK125269.1|CK125269 BES1824107i19 BES1824 Hordeum vulgar... 564 e-163
gb|AV915784.1|AV915784 AV915784 K. Sato unpublished cDNA li... 323 e-105
gb|AV915931.1|AV915931 AV915931 K. Sato unpublished cDNA li... 346 e-104
gb|BU984242.1|BU984242 HF03G06r HF Hordeum vulgare subsp. v... 359 3e-098
gb|AV916763.1|AV916763 AV916763 K. Sato unpublished cDNA li... 321 5e-095
gb|AV916782.1|AV916782 AV916782 K. Sato unpublished cDNA li... 346 2e-094
gb|BJ468452.1|BJ468452 BJ468452 K. Sato unpublished cDNA li... 267 2e-085
gb|AV920899.1|AV920899 AV920899 K. Sato unpublished cDNA li... 253 2e-066
gb|AV922058.1|AV922058 AV922058 K. Sato unpublished cDNA li... 253 2e-066
gb|AV921048.1|AV921048 AV921048 K. Sato unpublished cDNA li... 202 6e-056
gb|CK123944.1|CK123944 BES1824106e04 BES1824 Hordeum vulgar... 218 8e-056
gb|AV922079.1|AV922079 AV922079 K. Sato unpublished cDNA li... 173 3e-042
gb|AJ462078.1|AJ462078 AJ462078 S00002 Hordeum vulgare subs... 123 3e-027
>gb|CK125269.1|CK125269 BES1824107i19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I197 5-PRIME, mRNA sequence
Length = 917
Score = 564 bits (1226), Expect(2) = e-163
Identities = 225/280 (80%), Positives = 258/280 (92%)
Frame = -1 / +1
Query: 1531 VKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRELVDIVGVVQSVSPTL 1352
V+NDYE++LNENA+VEEAEGE+F+PPVQYN VKID LGPYVGGRELVDI+GVVQSVSPTL
Sbjct: 1 VQNDYEMTLNENAVVEEAEGESFIPPVQYNFVKIDMLGPYVGGRELVDIIGVVQSVSPTL 180
Query: 1351 SVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMVDSSPVVAIKSLKVS 1172
S+RRKIDNE+IPKRDIVVADDS KTVT+SLWNDLATT G+ELLDMVDS+P+VAIKSLKVS
Sbjct: 181 SIRRKIDNESIPKRDIVVADDSNKTVTVSLWNDLATTLGEELLDMVDSAPIVAIKSLKVS 360
Query: 1171 DFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAEVGATRAGGFKSMYS 992
DFQGVS+ST+G+STL INP+LPE + L++WY+SEGK TSLA + A +GA+ AGG +SMYS
Sbjct: 361 DFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTSLASVGAGMGASSAGGLRSMYS 540
Query: 991 DRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTTCNKKVTEAFGSGYWCE 812
DRVFLSHITSDP +GQ+KPVFFSL A ISHIKPDQ MWYRACTTCNKKVTEA GSGYWCE
Sbjct: 541 DRVFLSHITSDPNLGQDKPVFFSLCANISHIKPDQTMWYRACTTCNKKVTEALGSGYWCE 720
Query: 811 GCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
GCQKN ECSLRYIMVIK+SDPTGEAW+S+FN+ A +I+G
Sbjct: 721 GCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAXRIVG 840
Score = 430 bits (934), Expect = e-120
Identities = 201/279 (72%), Positives = 212/279 (75%)
Frame = +3 / -1
Query: 690 QPMIFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHPSHQYPDPKASVTFLLQVVQ 869
+P I A SL D+QASPVGSE+LITMMYL+EHS FFWHPSHQYPDP ASVTFLLQVVQ
Sbjct: 842 RPTILXAWSLKRDSQASPVGSETLITMMYLNEHSS*FFWHPSHQYPDPSASVTFLLQVVQ 663
Query: 870 ARYHIF*SGLMWLMMAYRLKKTGFSWPIAGSLVM*DRKTLSEYMDLKPPARVAPTSALIG 1049
ARYH+ SGLMWLM+A+RLKKTG SWP GSLVM*DRKTLSEY+DLKPPA AP A
Sbjct: 662 ARYHMVWSGLMWLMLAHRLKKTGLSWPKLGSLVM*DRKTLSEYIDLKPPALDAPIPAPTD 483
Query: 1050 ASEVSLPSESYQDLRFLASGKSGLISRVLLPIVERDTPWKSDTFRLFIATTGELSTMSKS 1229
A EV LPS+SYQ L F SG SGLI+ VLLP VE DTP KSDTFRL IAT G STMS S
Sbjct: 482 AKEVPLPSDSYQALSFSVSGNSGLITSVLLPTVETDTP*KSDTFRLLIATIGAESTMSNS 303
Query: 1230 SWPVVVARSFQREIVTVLPESSATTMSRFGIVSLSIFLLTLSVGDXXXXXXXXXXXXXXX 1409
S P VVARSFQRE VTVL ESSATTMSRFGI SLSIFLL L VGD
Sbjct: 302 SSPRVVARSFQRETVTVLFESSATTMSRFGIDSLSIFLLILRVGDTL*TTPMISTNSLPP 123
Query: 1410 XYGPS*SILTRLYCTGGRKVSPSASSTIAFSFSDNS*SF 1526
YGPS SILT+LYCTGG K SPSASST AFSF S*SF
Sbjct: 122 TYGPSISILTKLYCTGGMKDSPSASSTTAFSFRVIS*SF 6
Score = 348 bits (754), Expect = 5e-095
Identities = 161/286 (56%), Positives = 196/286 (68%)
Frame = +2 / -3
Query: 674 KLVGAAANDLLRMLVEHGHPSLTSGIGELDHHDVSQRALRVILLAPLAPVSRPKSFSHLL 853
+L A++ L +++E G P LT I +LDHHDV QRAL ++LLAP PVS + HLL
Sbjct: 858 RLFALQADNPLCLVIEKGQPGLTCWIRDLDHHDVPQRALLIVLLAPFTPVS*SECLGHLL 679
Query: 854 VTGRASTVPHILIRLDVAYDGIQTEENRLFLAHSRITGDVRQKNSIRIHGLETTSACGTH 1033
V G AS VPH L+RLDVAY G Q EENRL LA R+T DVRQKNS+R+H +TTSA TH
Sbjct: 678 VAGGASAVPHGLVRLDVAYVGTQAEENRLILAQVRVTCDVRQKNSVRVH*SQTTSAGCTH 499
Query: 1034 FCTDWCQ*SIFAFRVIPGLKILSLRQVRINLESTSANS*KRHALEVRYF*ALYRNNRRTV 1213
T+ CQ S AFR IPG K+LSLRQ+ +N + T A RHAL+VRYF AL N+R V
Sbjct: 498 SSTN*CQGSTLAFRFIPGSKLLSLRQLWVNNKCTLAYCRDRHALKVRYFQALDCNDRCRV 319
Query: 1214 NHVQKLLASRSSKIIPERNSNSFARVICYNNVTLRYCLVVNLSPNTECGRYALNHTNNIY 1393
NHVQ+L KIIP+RN + VIC NNVTL L+V+L +T+ Y LN+TN+IY
Sbjct: 318 NHVQQLFTKSGGKIIPKRNCDGLV*VICNNNVTLWN*LIVDLPSDTQSR*YTLNNTNDIY 139
Query: 1394 KLPATDVWS*LINLDKVVLHWWKESLPLCFFNNSILV**QLIVIFD 1531
LPAT++W INL+KVVLHWW E PL FFNNSIL+ LIVI D
Sbjct: 138 *LPATNIWPQHINLNKVVLHWWNERFPLSFFNNSILIQGHLIVILD 1
Score = 178 bits (383), Expect(2) = 4e-068
Identities = 89/163 (54%), Positives = 112/163 (68%)
Frame = -3 / +3
Query: 1499 ECYC*RSRGGDFPSTSAIQPCQD*SARTIRRWQGACRYCWCGSERISHTQC*EKD*QRDN 1320
EC C*RS GG F STSAIQ C D* A I WQG RY WC SE I++++ ++D Q N
Sbjct: 33 ECCC*RS*GGIFHSTSAIQLC*D*YAGAICWWQGVSRYHWCCSECITYSEYQKEDRQ*VN 212
Query: 1319 TEA*HCCSR*LWQNCYYFSLE*SCYYDWPRAFGHG*QFSCCCDKEPKSI*LPRRVSFNYW 1140
++A*HCC R*L Q+ + FSLE*SC++ W RA GHG* + C++EP+SI*L RRV
Sbjct: 213 SKA*HCCCR*LKQDRHSFSLE*SCHHSW*RAVGHG*LCTYRCNQEPESI*LSRRVCLYSR 392
Query: 1139 QKYSRD*S*LA*G*ES*VLV*L*RQRYFTGTNQCRSGCHTRWW 1011
Q+Y+ * +A* *E+* LV*+*RQ YF G + C +GC RWW
Sbjct: 393 QEYTCY*PRVA*D*EA*SLV*I*RQGYFLGISWCWNGCIQRWW 521
Score = 171 bits (368), Expect(2) = 1e-060
Identities = 89/171 (52%), Positives = 100/171 (58%)
Frame = -2 / +2
Query: 1185 A*KYLTSKACLFQLLAEVXXXXXXXXXXXXXXSPGMTLKAKILHWHQSVQKWVPHALVVS 1006
A*KYLT KACL A V PGM LKA++L WHQ V +WV ALVV
Sbjct: 347 A*KYLTFKACLSLQ*ARVHLLLTQSCLRLRSLEPGMNLKARVLPWHQLVLEWVHPALVV* 526
Query: 1005 SPCILIEFFCLTSPVILLWARKSLFSSVCMPS*ATSSLIRICGTVLARPVTRR*LKLLGL 826
C L EFFCLTS V L WAR SLFSS C+P+*ATSSL R CGT LA P TRR* +
Sbjct: 527 DQCTLTEFFCLTSQVTLTWARISLFSSACVPT*ATSSLTRPCGTALAPPATRR*PRHSDQ 706
Query: 825 DTGARGAKRMTLSAR*DTXXXXXSPIPLVRLGCPCSTSMRRRSLAAAPTSL 673
DTG +GA+R SAR* T S I VR GCP S + R A + +L
Sbjct: 707 DTGVKGARRTMRSAR*GTSW*SRSLIQQVRPGCPFSMTKXRGLSACSANNL 859
Score = 171 bits (367), Expect(2) = 1e-073
Identities = 86/154 (55%), Positives = 98/154 (63%)
Frame = +1 / -2
Query: 700 SSPHAR*TRTPKPHQWDRRA*SP*CISASTQSHSFGTPRTSIQTQKLQSPSCYRSCKHGT 879
SS * T +PH D+R *SP*C S ST S GT TSI + +SPSC R CK GT
Sbjct: 832 SSXLGH*KGTARPHLLDQRP*SP*CTSTSTPHSSSGTLHTSILIRVPRSPSCCRWCKRGT 653
Query: 880 TYSDQA*CGL*WHTD*RKQAFPGP*QDHW*CETEKLYQNTWT*NHQRVWHPLLH*LVPVK 1059
T+S QA*CGL WHT *RKQA+PGP H *CETEKL Q+T NHQR HP H L+P K
Sbjct: 652 TWSGQA*CGLCWHTG*RKQAYPGPS*GHL*CETEKLCQSTLISNHQRWMHPFQHQLMPRK 473
Query: 1060 YLCLQSHTRT*DS*PQASQD*SREYFCQ*LKETR 1161
Y CLQ HTR * S QA+ * + Y C ++TR
Sbjct: 472 YPCLQIHTRL*ASQSQATLG**QVYSCLL*RQTR 371
Score = 127 bits (272), Expect(2) = 1e-073
Identities = 61/104 (58%), Positives = 69/104 (66%)
Frame = +1 / -2
Query: 1213 QPCPKALGQS**QDHSREK**QFCQSHLLQQCHASVLSRCQSFS*H*VWEIRSEPHQQYL 1392
QPCP AL Q QDHS+EK *+ C SHL QQCHA L+ C+S *+ I SE HQ YL
Sbjct: 319 QPCPTALHQEWWQDHSKEKL*RSCLSHLQQQCHALELTHCRSSF*YSE*VIHSEQHQ*YL 140
Query: 1393 QAPCHRRMVLADQS*QGCIALVEGKSPPLLLQQ*HSRLVTTHSH 1524
PCH+ M A QS*Q CIALVE K PP LLQQ HS ++HSH
Sbjct: 139 LTPCHQHMAPAYQS*QSCIALVE*KIPPQLLQQQHSHSGSSHSH 8
Score = 101 bits (215), Expect(2) = 4e-068
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = -3 / +3
Query: 950 GPGKACFLQSVCHHKPHQA*SEYVVPCLHDL*QEGD*SFWVWILVRGVPKE*L*VLAEIH 771
GPG ACFLQ VC HKPHQA* ++VVP LH L QEGD + ILV VP+E VL E+H
Sbjct: 582 GPG*ACFLQPVCQHKPHQA*PDHVVPRLHHLQQEGDRGTRIRILV*RVPEEL*GVLVEVH 761
Query: 770 HGDQALRSHW*GLGVRVQRACGED 699
HGDQ L S+ *GL V Q ED
Sbjct: 762 HGDQGL*SNR*GLAVPFQ*PSXED 833
Score = 83.1 bits (175), Expect(2) = 1e-060
Identities = 46/75 (61%), Positives = 49/75 (65%)
Frame = -2 / +2
Query: 1530 SKMTMSCH*TRMLLLKKQRGRLSFHQCNTTLSRLIS*DHTSVAGSL*ILLVWFRAYLPHS 1351
S+MTM * RMLLLKK RG LSFHQCNTTL RLI H VAGS *I LV FR Y
Sbjct: 2 SRMTMR*P*MRMLLLKKLRGNLSFHQCNTTLLRLICWGHMLVAGS**ISLVLFRVYHLL* 181
Query: 1350 VLGERLTTRQYRSVT 1306
V R T Q++SVT
Sbjct: 182 VSEGRSTMSQFQSVT 226
Score = 32.7 bits (65), Expect(2) = e-163
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1 / +2
Query: 691 CSADELDRIRKEEGDD 644
CSA+ LDRI KEEGD+
Sbjct: 842 CSANNLDRIXKEEGDE 889
>gb|AV915784.1|AV915784 AV915784 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p23 5', mRNA sequence
Length = 613
Score = 323 bits (699), Expect(2) = e-105
Identities = 127/161 (78%), Positives = 143/161 (88%)
Frame = -1 / +3
Query: 1096 NLKSWYDSEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLY 917
+L +WY+SEGK TSLA + A +GA+ AGG +SMYSDRVFLSHITSDP +GQ+KPVFFSL
Sbjct: 21 SLXAWYESEGKGTSLASVGAGMGASSAGGLRSMYSDRVFLSHITSDPNLGQDKPVFFSLC 200
Query: 916 AIISHIKPDQNMWYRACTTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGE 737
A ISHIKPDQ MWYRACTTCNKKVTEA GSGYWCEGCQKN ECSLRYIMVIK+SDPTGE
Sbjct: 201 ANISHIKPDQTMWYRACTTCNKKVTEALGSGYWCEGCQKNYEECSLRYIMVIKVSDPTGE 380
Query: 736 AWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEAT 614
AW+S+FN+ AE+I+GCSAD LDRIRKEEGDD + LKLKEAT
Sbjct: 381 AWLSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEAT 503
Score = 239 bits (516), Expect(2) = 2e-075
Identities = 102/132 (77%), Positives = 110/132 (83%)
Frame = +3 / -1
Query: 690 QPMIFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHPSHQYPDPKASVTFLLQVVQ 869
QP I SA SL D+QASPVGSE+LITMMYL+EHS FFWHPSHQYPDP ASVTFLLQVVQ
Sbjct: 427 QPTILSAWSLKRDSQASPVGSETLITMMYLNEHSS*FFWHPSHQYPDPSASVTFLLQVVQ 248
Query: 870 ARYHIF*SGLMWLMMAYRLKKTGFSWPIAGSLVM*DRKTLSEYMDLKPPARVAPTSALIG 1049
ARYH+ SGLMWLM+A+RLKKTG SWP GSLVM*DRKTLSEY+DLKPPA AP A
Sbjct: 247 ARYHMVWSGLMWLMLAHRLKKTGLSWPKLGSLVM*DRKTLSEYIDLKPPALDAPIPAPTD 68
Query: 1050 ASEVSLPSESYQ 1085
A EV LPS+SYQ
Sbjct: 67 AKEVPLPSDSYQ 32
Score = 207 bits (446), Expect(2) = 1e-062
Identities = 93/158 (58%), Positives = 112/158 (70%)
Frame = +2 / -3
Query: 614 GGFLELENVAVVPLLFPDPIKLVGAAANDLLRMLVEHGHPSLTSGIGELDHHDVSQRALR 793
GGFL+LE V+ LLF DPIK++ AA++ L +++E G P LT I +LDHHDV QRAL
Sbjct: 503 GGFLQLELEHVIALLFSDPIKIICTAADNPLCLVIEKGQPGLTCWIRDLDHHDVPQRALL 324
Query: 794 VILLAPLAPVSRPKSFSHLLVTGRASTVPHILIRLDVAYDGIQTEENRLFLAHSRITGDV 973
++LLAP PVS + HLLV G AS VPH L+RLDVAY G Q EENRL LA R+T DV
Sbjct: 323 IVLLAPFTPVS*SECLGHLLVAGGASAVPHGLVRLDVAYVGTQAEENRLILAQVRVTCDV 144
Query: 974 RQKNSIRIHGLETTSACGTHFCTDWCQ*SIFAFRVIPG 1087
RQKNS+R+H +TTSA TH T+ CQ S AFR IPG
Sbjct: 143 RQKNSVRVH*SQTTSAGCTHSSTN*CQGSTLAFRFIPG 30
Score = 193 bits (417), Expect(2) = 6e-055
Identities = 93/159 (58%), Positives = 103/159 (64%)
Frame = +1 / -2
Query: 610 PRWLP*A*ERSCRPPPLS*SDQARRRCSQ*SSPHAR*TRTPKPHQWDRRA*SP*CISAST 789
P WLP A* +C PPL *SDQ CS+ SS * T +PH D+R *SP*C S ST
Sbjct: 507 PGWLPSA*AGTCHRPPLF*SDQDYLHCSRQSSLLGH*KGTARPHLLDQRP*SP*CTSTST 328
Query: 790 QSHSFGTPRTSIQTQKLQSPSCYRSCKHGTTYSDQA*CGL*WHTD*RKQAFPGP*QDHW* 969
S GT TSI + +SPSC R CK GTT+S QA*CGL WHT *RKQA+PGP H *
Sbjct: 327 PHSSSGTLHTSILIRVPRSPSCCRWCKRGTTWSGQA*CGLCWHTG*RKQAYPGPS*GHL* 148
Query: 970 CETEKLYQNTWT*NHQRVWHPLLH*LVPVKYLCLQSHTR 1086
CETEKL Q+T NHQR HP H L+P KY CLQ HTR
Sbjct: 147 CETEKLCQSTLISNHQRWMHPFQHQLMPRKYPCLQIHTR 31
Score = 184 bits (396), Expect(2) = 4e-052
Identities = 91/158 (57%), Positives = 102/158 (64%)
Frame = -2 / +1
Query: 1086 PGMTLKAKILHWHQSVQKWVPHALVVSSPCILIEFFCLTSPVILLWARKSLFSSVCMPS* 907
PGM LKA++L WHQ V +WV ALVV C L EFFCLTS V L WAR SLFSS C+P+*
Sbjct: 31 PGMNLKARVLPWHQLVLEWVHPALVV*DQCTLTEFFCLTSQVTLTWARISLFSSACVPT* 210
Query: 906 ATSSLIRICGTVLARPVTRR*LKLLGLDTGARGAKRMTLSAR*DTXXXXXSPIPLVRLGC 727
ATSSL R CGT LA P TRR* + DTG +GA+R SAR* T S I VR GC
Sbjct: 211 ATSSLTRPCGTALAPPATRR*PRHSDQDTGVKGARRTMRSAR*GTSW*SRSLIQQVRPGC 390
Query: 726 PCSTSMRRRSLAAAPTSLIGSGKRRGTTATFSSSRKPP 613
P S + +R AA LIGS KRR T + SS RKPP
Sbjct: 391 PFSMTKQRGLSAAVQIILIGSEKRRAMTCSSSS*RKPP 504
Score = 129 bits (276), Expect(3) = 9e-042
Identities = 66/114 (57%), Positives = 77/114 (67%)
Frame = -3 / +2
Query: 950 GPGKACFLQSVCHHKPHQA*SEYVVPCLHDL*QEGD*SFWVWILVRGVPKE*L*VLAEIH 771
GPG ACFLQ VC HKPHQA* ++VVP LH L QEGD + ILV VP+E VL E+H
Sbjct: 167 GPG*ACFLQPVCQHKPHQA*PDHVVPRLHHLQQEGDRGTRIRILV*RVPEEL*GVLVEVH 346
Query: 770 HGDQALRSHW*GLGVRVQRACGEDHWLQRRRA*SDQERGGGRQLRSQAQGSHLG 609
HGDQ L S+ *GL V Q ED LQ R +*SDQ+RGG + +QA+GSH G
Sbjct: 347 HGDQGL*SNR*GLAVPFQ*PSREDCRLQCR*S*SDQKRGGR*HVPAQAEGSHPG 508
Score = 79.0 bits (166), Expect(2) = e-105
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = -1 / +1
Query: 625 KEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAE 506
++ WVPHLFRVSV Q+EYM EKRQRITVR E+PVDFAAE
Sbjct: 493 RKPPWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAE 612
Score = 65.2 bits (136), Expect(2) = 2e-075
Identities = 30/36 (83%), Positives = 30/36 (83%)
Frame = +3 / -3
Query: 507 SAAKSTGASPLTVILCLFSFMYSCCVTLTRNR*GTQ 614
SAAKSTG S LTVILCLFS MYS C TLTRNR GTQ
Sbjct: 611 SAAKSTGDSLLTVILCLFSPMYSFCATLTRNRWGTQ 504
Score = 54.2 bits (112), Expect(2) = 1e-062
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2 / -2
Query: 509 SCEVDRCFTPHGDSLPLLVHVFMLCDADAEQVRNPG 616
S +V+R PHGD LPLL HV +L +AD EQV NPG
Sbjct: 609 SSKVNRRLAPHGDPLPLLAHVLVLRNADTEQVGNPG 502
Score = 41.8 bits (85), Expect(2) = 4e-052
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -2 / +2
Query: 615 PGFLTCSASASHSMNT*TRRGRESP*GVKHRST 517
PGF TCS SA +T RRGR SP*G R T
Sbjct: 503 PGFPTCSVSALRRTSTWARRGRGSP*GASRRLT 601
Score = 41.8 bits (85), Expect(2) = 6e-055
Identities = 20/36 (55%), Positives = 23/36 (63%)
Frame = +1 / -1
Query: 508 QLRSRPVLHPSR*FSASSRSCIHAV*R*RGTGEEPR 615
Q +S+P SR* SASSR C + R* GTG EPR
Sbjct: 610 QQQSQPATRSSR*SSASSRPCTRSAQR*HGTGGEPR 503
Score = 40.5 bits (82), Expect(3) = 9e-042
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -3 / +3
Query: 614 LGSSPVPRQRHTA*IHEREEAENHRE 537
LGS PVP QR +H REEAE+HRE
Sbjct: 504 LGSPPVPCQRCAERVHGREEAEDHRE 581
Score = 40.0 bits (81), Expect(3) = 9e-042
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3 / +2
Query: 1085 LV*L*RQRYFTGTNQCRSGCHTRWW 1011
LV*+*RQ YF G + C +GC RWW
Sbjct: 32 LV*I*RQGYFLGISWCWNGCIQRWW 106
>gb|AV915931.1|AV915931 AV915931 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16l01 5', mRNA sequence
Length = 605
Score = 346 bits (750), Expect(2) = e-104
Identities = 142/177 (80%), Positives = 163/177 (92%)
Frame = -1 / +3
Query: 1453 VQYNLVKIDQLGPYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTV 1274
VQYN VKID LGPYVGGRELVDI+GVVQSVSPTLS+RRKIDNE+IPKRDIVVADDS KTV
Sbjct: 3 VQYNFVKIDMLGPYVGGRELVDIIGVVQSVSPTLSIRRKIDNESIPKRDIVVADDSNKTV 182
Query: 1273 TISLWNDLATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKN 1094
T+SLWNDLATT G+ELLDMVDS+P+VAIKSLKVSDFQGVS+ST+G+STL INP+LPE +
Sbjct: 183 TVSLWNDLATTLGEELLDMVDSAPIVAIKSLKVSDFQGVSVSTVGKSTLVINPELPETEK 362
Query: 1093 LKSWYDSEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFS 923
L++WY+SEGK TSLA + A +GA+ AGG +SMYSDRVFLSHITSDP +GQ+KPVFFS
Sbjct: 363 LRAWYESEGKGTSLASVGAGMGASSAGGLRSMYSDRVFLSHITSDPNLGQDKPVFFS 533
Score = 252 bits (544), Expect(2) = 3e-074
Identities = 123/177 (69%), Positives = 127/177 (71%)
Frame = +3 / -2
Query: 924 LKKTGFSWPIAGSLVM*DRKTLSEYMDLKPPARVAPTSALIGASEVSLPSESYQDLRFLA 1103
LKKTG SWP GSLVM*DRKTLSEY+DLKPPA AP A A EV LPS+SYQ L F
Sbjct: 532 LKKTGLSWPKLGSLVM*DRKTLSEYIDLKPPALDAPIPAPTDAKEVPLPSDSYQALSFSV 353
Query: 1104 SGKSGLISRVLLPIVERDTPWKSDTFRLFIATTGELSTMSKSSWPVVVARSFQREIVTVL 1283
SG SGLI+ VLLP VE DTP KSDTFRL IAT G STMS SS P VVARSFQRE VTVL
Sbjct: 352 SGNSGLITSVLLPTVETDTP*KSDTFRLLIATIGAESTMSNSSSPRVVARSFQRETVTVL 173
Query: 1284 PESSATTMSRFGIVSLSIFLLTLSVGDXXXXXXXXXXXXXXXXYGPS*SILTRLYCT 1454
ESSATTMSRFGI SLSIFLL L VGD YGPS SILT+LYCT
Sbjct: 172 FESSATTMSRFGIDSLSIFLLILRVGDTL*TTPMISTNSLPPTYGPSISILTKLYCT 2
Score = 208 bits (449), Expect(2) = 6e-058
Identities = 99/178 (55%), Positives = 123/178 (69%)
Frame = +2 / -1
Query: 920 QTEENRLFLAHSRITGDVRQKNSIRIHGLETTSACGTHFCTDWCQ*SIFAFRVIPGLKIL 1099
+ EENRL LA R+T DVRQKNS+R+H +TTSA TH T+ CQ S AFR IPG K+L
Sbjct: 536 RAEENRLILAQVRVTCDVRQKNSVRVH*SQTTSAGCTHSSTN*CQGSTLAFRFIPGSKLL 357
Query: 1100 SLRQVRINLESTSANS*KRHALEVRYF*ALYRNNRRTVNHVQKLLASRSSKIIPERNSNS 1279
SLRQ+ +N + T A RHAL+VRYF AL N+R VNHVQ+L KIIP+RN +
Sbjct: 356 SLRQLWVNNKCTLAYCRDRHALKVRYFQALDCNDRCRVNHVQQLFTKSGGKIIPKRNCDG 177
Query: 1280 FARVICYNNVTLRYCLVVNLSPNTECGRYALNHTNNIYKLPATDVWS*LINLDKVVLH 1453
VIC NNVTL L+V+L +T+ Y LN+TN+IY LPAT++W INL+KVVLH
Sbjct: 176 LV*VICNNNVTLWN*LIVDLPSDTQSR*YTLNNTNDIY*LPATNIWPQHINLNKVVLH 3
Score = 155 bits (334), Expect(2) = 8e-045
Identities = 78/148 (52%), Positives = 101/148 (68%)
Frame = -3 / +2
Query: 1454 SAIQPCQD*SARTIRRWQGACRYCWCGSERISHTQC*EKD*QRDNTEA*HCCSR*LWQNC 1275
SAIQ C D* A I WQG RY WC SE I++++ ++D Q N++A*HCC R*L Q+
Sbjct: 2 SAIQLC*D*YAGAICWWQGVSRYHWCCSECITYSEYQKEDRQ*VNSKA*HCCCR*LKQDR 181
Query: 1274 YYFSLE*SCYYDWPRAFGHG*QFSCCCDKEPKSI*LPRRVSFNYWQKYSRD*S*LA*G*E 1095
+ FSLE*SC++ W RA GHG* + C++EP+SI*L RRV Q+Y+ * +A* *E
Sbjct: 182 HSFSLE*SCHHSW*RAVGHG*LCTYRCNQEPESI*LSRRVCLYSRQEYTCY*PRVA*D*E 361
Query: 1094 S*VLV*L*RQRYFTGTNQCRSGCHTRWW 1011
+* LV*+*RQ YF G + C +GC RWW
Sbjct: 362 A*SLV*I*RQGYFLGISWCWNGCIQRWW 445
Score = 99.1 bits (210), Expect(3) = 5e-035
Identities = 48/87 (55%), Positives = 51/87 (58%)
Frame = -2 / +1
Query: 1185 A*KYLTSKACLFQLLAEVXXXXXXXXXXXXXXSPGMTLKAKILHWHQSVQKWVPHALVVS 1006
A*KYLT KACL A V PGM LKA++L WHQ V +WV ALVV
Sbjct: 271 A*KYLTFKACLSLQ*ARVHLLLTQSCLRLRSLEPGMNLKARVLPWHQLVLEWVHPALVV* 450
Query: 1005 SPCILIEFFCLTSPVILLWARKSLFSS 925
C L EFFCLTS V L WAR SLFSS
Sbjct: 451 DQCTLTEFFCLTSQVTLTWARISLFSS 531
Score = 98.7 bits (209), Expect(3) = 1e-048
Identities = 47/81 (58%), Positives = 53/81 (65%)
Frame = +1 / -3
Query: 1213 QPCPKALGQS**QDHSREK**QFCQSHLLQQCHASVLSRCQSFS*H*VWEIRSEPHQQYL 1392
QPCP AL Q QDHS+EK *+ C SHL QQCHA L+ C+S *+ I SE HQ YL
Sbjct: 243 QPCPTALHQEWWQDHSKEKL*RSCLSHLQQQCHALELTHCRSSF*YSE*VIHSEQHQ*YL 64
Query: 1393 QAPCHRRMVLADQS*QGCIAL 1455
PCH+ M A QS*Q CIAL
Sbjct: 63 LTPCHQHMAPAYQS*QSCIAL 1
Score = 86.8 bits (183), Expect(3) = 1e-048
Identities = 44/79 (55%), Positives = 51/79 (64%)
Frame = +1 / -3
Query: 925 *RKQAFPGP*QDHW*CETEKLYQNTWT*NHQRVWHPLLH*LVPVKYLCLQSHTRT*DS*P 1104
*RKQA+PGP H *CETEKL Q+T NHQR HP H L+P KY CLQ HTR * S
Sbjct: 531 *RKQAYPGPS*GHL*CETEKLCQSTLISNHQRWMHPFQHQLMPRKYPCLQIHTRL*ASQS 352
Query: 1105 QASQD*SREYFCQ*LKETR 1161
QA+ * + Y C ++TR
Sbjct: 351 QATLG**QVYSCLL*RQTR 295
Score = 54.7 bits (113), Expect(2) = e-104
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 925 SLYAIISHIKPDQNMWYRACTTCN 854
+L A ISHIKPDQ MWYRACTTCN
Sbjct: 532 ALCANISHIKPDQTMWYRACTTCN 603
Score = 48.3 bits (99), Expect(2) = 3e-074
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +3 / -1
Query: 852 LLQVVQARYHIF*SGLMWLMMAYRLKK 932
LLQVVQARYH+ SGLMWLM+A+R ++
Sbjct: 605 LLQVVQARYHMVWSGLMWLMLAHRAEE 525
Score = 47.8 bits (98), Expect(3) = 5e-035
Identities = 28/50 (56%), Positives = 30/50 (60%)
Frame = -2 / +1
Query: 1455 QCNTTLSRLIS*DHTSVAGSL*ILLVWFRAYLPHSVLGERLTTRQYRSVT 1306
QCNTTL RLI H VAGS *I LV FR Y V R T Q++SVT
Sbjct: 1 QCNTTLLRLICWGHMLVAGS**ISLVLFRVYHLL*VSEGRSTMSQFQSVT 150
Score = 47.8 bits (98), Expect(3) = 1e-048
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = +1 / -2
Query: 853 CYRSCKHGTTYSDQA*CGL*WHTD*RKQAFPGP 951
C R CK GTT+S QA*CGL WHT +K P
Sbjct: 604 CCRWCKRGTTWSGQA*CGLCWHTGLKKTGLSWP 506
Score = 46.0 bits (94), Expect(2) = 8e-045
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = -3 / +3
Query: 950 GPGKACFLQSVCHHKPHQA*SEYVVPCLHDL*Q 852
G K F VC HKPHQA* ++VVP LH L Q
Sbjct: 507 GQDKPVFFSPVCQHKPHQA*PDHVVPRLHHLQQ 605
Score = 40.0 bits (81), Expect(3) = 5e-035
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = -2 / +2
Query: 933 FSSVCMPS*ATSSLIRICGTVLARPVT 853
F C+P+*ATSSL R CGT LA P T
Sbjct: 524 FLQPCVPT*ATSSLTRPCGTALAPPAT 604
Score = 37.3 bits (75), Expect(2) = 6e-058
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2 / -3
Query: 854 VTGRASTVPHILIRLDVAYDGIQ 922
V G AS VPH L+RLDVAY G Q
Sbjct: 603 VAGGASAVPHGLVRLDVAYVGTQ 535
>gb|BU984242.1|BU984242 HF03G06r HF Hordeum vulgare subsp. vulgare cDNA clone HF03G06
5-PRIME, mRNA sequence
Length = 600
Score = 359 bits (778), Expect = 3e-098
Identities = 147/181 (81%), Positives = 170/181 (93%)
Frame = -1 / +3
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ +SKGSLRIANKQFKTV+NDYE++LNENA+VEEAEGE+F+PPVQYN VKID LGPY
Sbjct: 54 GKVYYISKGSLRIANKQFKTVQNDYEMTLNENAVVEEAEGESFIPPVQYNFVKIDMLGPY 233
Query: 1411 VGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQ 1232
VGGRELVDI+GVVQSVSPTLS+RRKIDNE+IPKRDIVVADDS KTVT+SLWNDLATT G+
Sbjct: 234 VGGRELVDIIGVVQSVSPTLSIRRKIDNESIPKRDIVVADDSNKTVTVSLWNDLATTLGE 413
Query: 1231 ELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSL 1052
ELLDMVDS+P+VAIKSLKVSDFQGVS+ST+G+STL INP+LPE + L++WY+SEGK TSL
Sbjct: 414 ELLDMVDSAPIVAIKSLKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTSL 593
Query: 1051 A 1049
A
Sbjct: 594 A 596
Score = 245 bits (530), Expect = 4e-064
Identities = 122/175 (69%), Positives = 125/175 (71%)
Frame = +3 / -3
Query: 1050 ASEVSLPSESYQDLRFLASGKSGLISRVLLPIVERDTPWKSDTFRLFIATTGELSTMSKS 1229
A EV LPS+SYQ L F SG SGLI+ VLLP VE DTP KSDTFRL IAT G STMS S
Sbjct: 595 AKEVPLPSDSYQALSFSVSGNSGLITSVLLPTVETDTP*KSDTFRLLIATIGAESTMSNS 416
Query: 1230 SWPVVVARSFQREIVTVLPESSATTMSRFGIVSLSIFLLTLSVGDXXXXXXXXXXXXXXX 1409
S P VVARSFQRE VTVL ESSATTMSRFGI SLSIFLL L VGD
Sbjct: 415 SSPRVVARSFQRETVTVLFESSATTMSRFGIDSLSIFLLILRVGDTL*TTPMISTNSLPP 236
Query: 1410 XYGPS*SILTRLYCTGGRKVSPSASSTIAFSFSDNS*SFLTVLNCLLAILRDPFE 1574
YGPS SILT+LYCTGG K SPSASST AFSF S*SF TVLNCL AIL DP E
Sbjct: 235 TYGPSISILTKLYCTGGMKDSPSASSTTAFSFRVIS*SFWTVLNCLFAILSDPLE 71
Score = 210 bits (454), Expect = 1e-053
Identities = 100/176 (56%), Positives = 120/176 (68%)
Frame = +2 / -2
Query: 1049 CQ*SIFAFRVIPGLKILSLRQVRINLESTSANS*KRHALEVRYF*ALYRNNRRTVNHVQK 1228
CQ S AFR IPG K+LSLRQ+ +N + T A RHAL+VRYF AL N+R VNHVQ+
Sbjct: 596 CQGSTLAFRFIPGSKLLSLRQLWVNNKCTLAYCRDRHALKVRYFQALDCNDRCRVNHVQQ 417
Query: 1229 LLASRSSKIIPERNSNSFARVICYNNVTLRYCLVVNLSPNTECGRYALNHTNNIYKLPAT 1408
L KIIP+RN + VIC NNVTL L+V+L +T+ Y LN+TN+IY LPAT
Sbjct: 416 LFTKSGGKIIPKRNCDGLV*VICNNNVTLWN*LIVDLPSDTQSR*YTLNNTNDIY*LPAT 237
Query: 1409 DVWS*LINLDKVVLHWWKESLPLCFFNNSILV**QLIVIFDCLELLVGNSKRSF*D 1576
++W INL+KVVLHWW E PL FFNNSIL+ LIVI D LELLV NS+R D
Sbjct: 236 NIWPQHINLNKVVLHWWNERFPLSFFNNSILIQGHLIVILDRLELLVCNSQRPLGD 69
Score = 176 bits (379), Expect = 3e-043
Identities = 94/175 (53%), Positives = 121/175 (69%)
Frame = -3 / +2
Query: 1574 LKRIS*NCQQAVQDSQK*L*VVTKRECYC*RSRGGDFPSTSAIQPCQD*SARTIRRWQGA 1395
L+ ++ NC+QAVQD +*L* + EC C*RS GG F STSAIQ C D* A I WQG
Sbjct: 71 LQGVAENCKQAVQDGPE*L*DDPE*ECCC*RS*GGIFHSTSAIQLC*D*YAGAICWWQGV 250
Query: 1394 CRYCWCGSERISHTQC*EKD*QRDNTEA*HCCSR*LWQNCYYFSLE*SCYYDWPRAFGHG 1215
RY WC SE I++++ ++D Q N++A*HCC R*L Q+ + FSLE*SC++ W RA GHG
Sbjct: 251 SRYHWCCSECITYSEYQKEDRQ*VNSKA*HCCCR*LKQDRHSFSLE*SCHHSW*RAVGHG 430
Query: 1214 *QFSCCCDKEPKSI*LPRRVSFNYWQKYSRD*S*LA*G*ES*VLV*L*RQRYFTG 1050
* + C++EP+SI*L RRV Q+Y+ * +A* *E+* LV*+*RQ YF G
Sbjct: 431 *LCTYRCNQEPESI*LSRRVCLYSRQEYTCY*PRVA*D*EA*SLV*I*RQGYFLG 595
Score = 138 bits (295), Expect(2) = 3e-036
Identities = 68/115 (59%), Positives = 76/115 (66%)
Frame = +1 / -1
Query: 1213 QPCPKALGQS**QDHSREK**QFCQSHLLQQCHASVLSRCQSFS*H*VWEIRSEPHQQYL 1392
QPCP AL Q QDHS+EK *+ C SHL QQCHA L+ C+S *+ I SE HQ YL
Sbjct: 432 QPCPTALHQEWWQDHSKEKL*RSCLSHLQQQCHALELTHCRSSF*YSE*VIHSEQHQ*YL 253
Query: 1393 QAPCHRRMVLADQS*QGCIALVEGKSPPLLLQQ*HSRLVTTHSHF*LS*TACWQF 1557
PCH+ M A QS*Q CIALVE K PP LLQQ HS ++HSH S*TAC QF
Sbjct: 252 LTPCHQHMAPAYQS*QSCIALVE*KIPPQLLQQQHSHSGSSHSHSGPS*TACLQF 88
Score = 97.3 bits (206), Expect(2) = 3e-027
Identities = 53/84 (63%), Positives = 57/84 (67%)
Frame = -2 / +1
Query: 1557 ELPTSSSRQSKMTMSCH*TRMLLLKKQRGRLSFHQCNTTLSRLIS*DHTSVAGSL*ILLV 1378
EL TSSSR+S+MTM * RMLLLKK RG LSFHQCNTTL RLI H VAGS *I LV
Sbjct: 88 ELQTSSSRRSRMTMR*P*MRMLLLKKLRGNLSFHQCNTTLLRLICWGHMLVAGS**ISLV 267
Query: 1377 WFRAYLPHSVLGERLTTRQYRSVT 1306
FR Y V R T Q++SVT
Sbjct: 268 LFRVYHLL*VSEGRSTMSQFQSVT 339
Score = 45.5 bits (93), Expect(2) = 3e-027
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = -2 / +1
Query: 1185 A*KYLTSKACLFQLLAEVXXXXXXXXXXXXXXSPGMTLKAKILHWHQ 1045
A*KYLT KACL A V PGM LKA++L WHQ
Sbjct: 460 A*KYLTFKACLSLQ*ARVHLLLTQSCLRLRSLEPGMNLKARVLPWHQ 600
Score = 35.0 bits (70), Expect(2) = 3e-036
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1 / -1
Query: 1045 LVPVKYLCLQSHTRT*DS*PQASQD*SREYFCQ*LKETR 1161
L+P KY CLQ HTR * S QA+ * + Y C ++TR
Sbjct: 600 LMPRKYPCLQIHTRL*ASQSQATLG**QVYSCLL*RQTR 484
>gb|AV916763.1|AV916763 AV916763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j02 5', mRNA sequence
Length = 573
Score = 321 bits (696), Expect(2) = 5e-095
Identities = 125/164 (76%), Positives = 146/164 (89%)
Frame = -1 / +3
Query: 1183 LKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAEVGATRAGGFK 1004
+KVSDF GVS+ST+G+STL INP+LPE + L++WY+SEGK TSLA + A +GA+ AGG +
Sbjct: 12 VKVSDFXGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTSLASVGAGMGASSAGGLR 191
Query: 1003 SMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTTCNKKVTEAFGSG 824
SMYSDRVFLSHITSDP +GQ+KPVFFSL A ISHIKPDQ MWYRACTTCNKKVTEA GSG
Sbjct: 192 SMYSDRVFLSHITSDPNLGQDKPVFFSLCANISHIKPDQTMWYRACTTCNKKVTEALGSG 371
Query: 823 YWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
YWCEGCQKN ECSLRYIMVIK+SDPTGEAW+S+FN+ AE+I+G
Sbjct: 372 YWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVG 503
Score = 283 bits (613), Expect(2) = 7e-078
Identities = 123/164 (75%), Positives = 133/164 (81%)
Frame = +3 / -3
Query: 690 QPMIFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHPSHQYPDPKASVTFLLQVVQ 869
+P I SA SL D+QASPVGSE+LITMMYL+EHS FFWHPSHQYPDP ASVTFLLQVVQ
Sbjct: 505 KPTILSAWSLKRDSQASPVGSETLITMMYLNEHSS*FFWHPSHQYPDPSASVTFLLQVVQ 326
Query: 870 ARYHIF*SGLMWLMMAYRLKKTGFSWPIAGSLVM*DRKTLSEYMDLKPPARVAPTSALIG 1049
ARYH+ SGLMWLM+A+RLKKTG SWP GSLVM*DRKTLSEY+DLKPPA AP A
Sbjct: 325 ARYHMVWSGLMWLMLAHRLKKTGLSWPKLGSLVM*DRKTLSEYIDLKPPALDAPIPAPTD 146
Query: 1050 ASEVSLPSESYQDLRFLASGKSGLISRVLLPIVERDTPWKSDTF 1181
A EV LPS+SYQ L F SG SGLI+ VLLP VE DTP KSDTF
Sbjct: 145 AKEVPLPSDSYQALSFSVSGNSGLITSVLLPTVETDTPXKSDTF 14
Score = 206 bits (444), Expect(2) = 4e-053
Identities = 95/169 (56%), Positives = 116/169 (68%)
Frame = +2 / -2
Query: 674 KLVGAAANDLLRMLVEHGHPSLTSGIGELDHHDVSQRALRVILLAPLAPVSRPKSFSHLL 853
+L A++ L +++E G P LT I +LDHHDV QRAL ++LLAP PVS + HLL
Sbjct: 521 RLSALQADNPLCLVIEKGQPGLTCWIRDLDHHDVPQRALLIVLLAPFTPVS*SECLGHLL 342
Query: 854 VTGRASTVPHILIRLDVAYDGIQTEENRLFLAHSRITGDVRQKNSIRIHGLETTSACGTH 1033
V G AS VPH L+RLDVAY G Q EENRL LA R+T DVRQKNS+R+H +TTSA TH
Sbjct: 341 VAGGASAVPHGLVRLDVAYVGTQAEENRLILAQVRVTCDVRQKNSVRVH*SQTTSAGCTH 162
Query: 1034 FCTDWCQ*SIFAFRVIPGLKILSLRQVRINLESTSANS*KRHALEVRYF 1180
T+ CQ S AFR IPG K+LSLRQ+ +N + T A RHA +VRYF
Sbjct: 161 SSTN*CQGSTLAFRFIPGSKLLSLRQLWVNNKCTLAYCRDRHAXKVRYF 15
Score = 171 bits (369), Expect = 7e-042
Identities = 90/178 (50%), Positives = 102/178 (57%)
Frame = -2 / +1
Query: 1182 *KYLTSKACLFQLLAEVXXXXXXXXXXXXXXSPGMTLKAKILHWHQSVQKWVPHALVVSS 1003
*KYLT KACL A V PGM LKA++L WHQ V +WV ALVV
Sbjct: 13 *KYLTXKACLSLQ*ARVHLLLTQSCLRLRSLEPGMNLKARVLPWHQLVLEWVHPALVV*D 192
Query: 1002 PCILIEFFCLTSPVILLWARKSLFSSVCMPS*ATSSLIRICGTVLARPVTRR*LKLLGLD 823
C L EFFCLTS V L WAR SLFSS C+P+*ATSSL R CGT LA P TRR* + D
Sbjct: 193 QCTLTEFFCLTSQVTLTWARISLFSSACVPT*ATSSLTRPCGTALAPPATRR*PRHSDQD 372
Query: 822 TGARGAKRMTLSAR*DTXXXXXSPIPLVRLGCPCSTSMRRRSLAAAPTSLIGSGKRRG 649
TG +GA+R SAR* T S I VR GCP S + +R A + +L K G
Sbjct: 373 TGVKGARRTMRSAR*GTSW*SRSLIQQVRPGCPFSMTKQRGLSACSADNLDRIRKEEG 546
Score = 171 bits (367), Expect = 1e-041
Identities = 87/157 (55%), Positives = 100/157 (63%)
Frame = +1 / -1
Query: 691 SQ*SSPHAR*TRTPKPHQWDRRA*SP*CISASTQSHSFGTPRTSIQTQKLQSPSCYRSCK 870
S+ SS * T +PH D+R *SP*C S ST S GT TSI + +SPSC R CK
Sbjct: 504 SRQSSLLGH*KGTARPHLLDQRP*SP*CTSTSTPHSSSGTLHTSILIRVPRSPSCCRWCK 325
Query: 871 HGTTYSDQA*CGL*WHTD*RKQAFPGP*QDHW*CETEKLYQNTWT*NHQRVWHPLLH*LV 1050
GTT+S QA*CGL WHT *RKQA+PGP H *CETEKL Q+T NHQR HP H L+
Sbjct: 324 RGTTWSGQA*CGLCWHTG*RKQAYPGPS*GHL*CETEKLCQSTLISNHQRWMHPFQHQLM 145
Query: 1051 PVKYLCLQSHTRT*DS*PQASQD*SREYFCQ*LKETR 1161
P KY CLQ HTR * S QA+ * + Y C ++TR
Sbjct: 144 PRKYPCLQIHTRL*ASQSQATLG**QVYSCLL*RQTR 34
Score = 100 bits (214), Expect(3) = 4e-033
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = -3 / +2
Query: 950 GPGKACFLQSVCHHKPHQA*SEYVVPCLHDL*QEGD*SFWVWILVRGVPKE*L*VLAEIH 771
GPG ACFLQ VC HKPHQA* ++VVP LH L QEGD + ILV VP+E VL E+H
Sbjct: 245 GPG*ACFLQPVCQHKPHQA*PDHVVPRLHHLQQEGDRGTRIRILV*RVPEEL*GVLVEVH 424
Query: 770 HGDQALRSHW*GLGVRVQRACGED 699
HGDQ L S+ *GL V Q ED
Sbjct: 425 HGDQGL*SNR*GLAVPFQ*PSRED 496
Score = 55.1 bits (114), Expect(3) = 4e-033
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = -3 / +2
Query: 1181 KSI*LPRRVSFNYWQKYSRD*S*LA*G*ES*VLV*L*RQRYFTGTNQCRSGCHTRWW 1011
+SI*L RRV Q+Y+ * +A* *E+* LV*+*RQ YF G + C +GC RWW
Sbjct: 14 ESI*LXRRVCLYSRQEYTCY*PRVA*D*EA*SLV*I*RQGYFLGISWCWNGCIQRWW 184
Score = 47.8 bits (98), Expect(2) = 5e-095
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / +1
Query: 691 CSADELDRIRKEEGDDSYVLKLK 623
CSAD LDRIRKEEGDD + LKLK
Sbjct: 505 CSADNLDRIRKEEGDDMFQLKLK 573
Score = 28.6 bits (56), Expect(2) = 7e-078
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2 / -1
Query: 623 LELENVAVVPLLFPDPIKLVGAAA 694
L+LE V+ LLF DPIK++ A+
Sbjct: 573 LQLELEHVIALLFSDPIKIICTAS 502
Score = 24.4 bits (47), Expect(3) = 4e-033
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3 / +3
Query: 692 LQRRRA*SDQERGGGRQLRSQAQ 624
LQ R +*SDQ+RGG + +QA+
Sbjct: 504 LQCR*S*SDQKRGGR*HVPAQAE 572
Score = 23.5 bits (45), Expect(2) = 4e-053
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1 / -3
Query: 628 A*ERSCRPPPLS*SDQARRRC 690
A* +C PPL *SDQ C
Sbjct: 568 A*AGTCHRPPLF*SDQDYLHC 506
>gb|AV916782.1|AV916782 AV916782 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j24 5', mRNA sequence
Length = 532
Score = 346 bits (750), Expect = 2e-094
Identities = 142/177 (80%), Positives = 163/177 (92%)
Frame = -1 / +1
Query: 1453 VQYNLVKIDQLGPYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTV 1274
VQYN VKID LGPYVGGRELVDI+GVVQSVSPTLS+RRKIDNE+IPKRDIVVADDS KTV
Sbjct: 1 VQYNFVKIDMLGPYVGGRELVDIIGVVQSVSPTLSIRRKIDNESIPKRDIVVADDSNKTV 180
Query: 1273 TISLWNDLATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKN 1094
T+SLWNDLATT G+ELLDMVDS+P+VAIKSLKVSDFQGVS+ST+G+STL INP+LPE +
Sbjct: 181 TVSLWNDLATTLGEELLDMVDSAPIVAIKSLKVSDFQGVSVSTVGKSTLVINPELPETEK 360
Query: 1093 LKSWYDSEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFS 923
L++WY+SEGK TSLA + A +GA+ AGG +SMYSDRVFLSHITSDP +GQ+KPVFFS
Sbjct: 361 LRAWYESEGKGTSLASVGAGMGASSAGGLRSMYSDRVFLSHITSDPNLGQDKPVFFS 531
Score = 249 bits (539), Expect = 2e-065
Identities = 122/176 (69%), Positives = 126/176 (71%)
Frame = +3 / -3
Query: 924 LKKTGFSWPIAGSLVM*DRKTLSEYMDLKPPARVAPTSALIGASEVSLPSESYQDLRFLA 1103
LKKTG SWP GSLVM*DRKTLSEY+DLKPPA AP A A EV LPS+SYQ L F
Sbjct: 530 LKKTGLSWPKLGSLVM*DRKTLSEYIDLKPPALDAPIPAPTDAKEVPLPSDSYQALSFSV 351
Query: 1104 SGKSGLISRVLLPIVERDTPWKSDTFRLFIATTGELSTMSKSSWPVVVARSFQREIVTVL 1283
SG SGLI+ VLLP VE DTP KSDTFRL IAT G STMS SS P VVARSFQRE VTVL
Sbjct: 350 SGNSGLITSVLLPTVETDTP*KSDTFRLLIATIGAESTMSNSSSPRVVARSFQRETVTVL 171
Query: 1284 PESSATTMSRFGIVSLSIFLLTLSVGDXXXXXXXXXXXXXXXXYGPS*SILTRLYC 1451
ESSATTMSRFGI SLSIFLL L VGD YGPS SILT+LYC
Sbjct: 170 FESSATTMSRFGIDSLSIFLLILRVGDTL*TTPMISTNSLPPTYGPSISILTKLYC 3
Score = 208 bits (448), Expect = 9e-053
Identities = 99/176 (56%), Positives = 122/176 (69%)
Frame = +2 / -2
Query: 926 EENRLFLAHSRITGDVRQKNSIRIHGLETTSACGTHFCTDWCQ*SIFAFRVIPGLKILSL 1105
EENRL LA R+T DVRQKNS+R+H +TTSA TH T+ CQ S AFR IPG K+LSL
Sbjct: 528 EENRLILAQVRVTCDVRQKNSVRVH*SQTTSAGCTHSSTN*CQGSTLAFRFIPGSKLLSL 349
Query: 1106 RQVRINLESTSANS*KRHALEVRYF*ALYRNNRRTVNHVQKLLASRSSKIIPERNSNSFA 1285
RQ+ +N + T A RHAL+VRYF AL N+R VNHVQ+L KIIP+RN +
Sbjct: 348 RQLWVNNKCTLAYCRDRHALKVRYFQALDCNDRCRVNHVQQLFTKSGGKIIPKRNCDGLV 169
Query: 1286 RVICYNNVTLRYCLVVNLSPNTECGRYALNHTNNIYKLPATDVWS*LINLDKVVLH 1453
VIC NNVTL L+V+L +T+ Y LN+TN+IY LPAT++W INL+KVVLH
Sbjct: 168 *VICNNNVTLWN*LIVDLPSDTQSR*YTLNNTNDIY*LPATNIWPQHINLNKVVLH 1
Score = 154 bits (330), Expect(2) = 3e-037
Identities = 77/147 (52%), Positives = 100/147 (68%)
Frame = -3 / +3
Query: 1451 AIQPCQD*SARTIRRWQGACRYCWCGSERISHTQC*EKD*QRDNTEA*HCCSR*LWQNCY 1272
AIQ C D* A I WQG RY WC SE I++++ ++D Q N++A*HCC R*L Q+ +
Sbjct: 3 AIQLC*D*YAGAICWWQGVSRYHWCCSECITYSEYQKEDRQ*VNSKA*HCCCR*LKQDRH 182
Query: 1271 YFSLE*SCYYDWPRAFGHG*QFSCCCDKEPKSI*LPRRVSFNYWQKYSRD*S*LA*G*ES 1092
FSLE*SC++ W RA GHG* + C++EP+SI*L RRV Q+Y+ * +A* *E+
Sbjct: 183 SFSLE*SCHHSW*RAVGHG*LCTYRCNQEPESI*LSRRVCLYSRQEYTCY*PRVA*D*EA 362
Query: 1091 *VLV*L*RQRYFTGTNQCRSGCHTRWW 1011
* LV*+*RQ YF G + C +GC RWW
Sbjct: 363 *SLV*I*RQGYFLGISWCWNGCIQRWW 443
Score = 99.1 bits (210), Expect(2) = 9e-028
Identities = 48/87 (55%), Positives = 51/87 (58%)
Frame = -2 / +2
Query: 1185 A*KYLTSKACLFQLLAEVXXXXXXXXXXXXXXSPGMTLKAKILHWHQSVQKWVPHALVVS 1006
A*KYLT KACL A V PGM LKA++L WHQ V +WV ALVV
Sbjct: 269 A*KYLTFKACLSLQ*ARVHLLLTQSCLRLRSLEPGMNLKARVLPWHQLVLEWVHPALVV* 448
Query: 1005 SPCILIEFFCLTSPVILLWARKSLFSS 925
C L EFFCLTS V L WAR SLFSS
Sbjct: 449 DQCTLTEFFCLTSQVTLTWARISLFSS 529
Score = 96.8 bits (205), Expect(2) = 2e-039
Identities = 46/80 (57%), Positives = 52/80 (65%)
Frame = +1 / -1
Query: 1213 QPCPKALGQS**QDHSREK**QFCQSHLLQQCHASVLSRCQSFS*H*VWEIRSEPHQQYL 1392
QPCP AL Q QDHS+EK *+ C SHL QQCHA L+ C+S *+ I SE HQ YL
Sbjct: 241 QPCPTALHQEWWQDHSKEKL*RSCLSHLQQQCHALELTHCRSSF*YSE*VIHSEQHQ*YL 62
Query: 1393 QAPCHRRMVLADQS*QGCIA 1452
PCH+ M A QS*Q CIA
Sbjct: 61 LTPCHQHMAPAYQS*QSCIA 2
Score = 86.8 bits (183), Expect(2) = 2e-039
Identities = 44/79 (55%), Positives = 51/79 (64%)
Frame = +1 / -1
Query: 925 *RKQAFPGP*QDHW*CETEKLYQNTWT*NHQRVWHPLLH*LVPVKYLCLQSHTRT*DS*P 1104
*RKQA+PGP H *CETEKL Q+T NHQR HP H L+P KY CLQ HTR * S
Sbjct: 529 *RKQAYPGPS*GHL*CETEKLCQSTLISNHQRWMHPFQHQLMPRKYPCLQIHTRL*ASQS 350
Query: 1105 QASQD*SREYFCQ*LKETR 1161
QA+ * + Y C ++TR
Sbjct: 349 QATLG**QVYSCLL*RQTR 293
Score = 45.5 bits (93), Expect(2) = 9e-028
Identities = 27/49 (55%), Positives = 29/49 (59%)
Frame = -2 / +2
Query: 1452 CNTTLSRLIS*DHTSVAGSL*ILLVWFRAYLPHSVLGERLTTRQYRSVT 1306
CNTTL RLI H VAGS *I LV FR Y V R T Q++SVT
Sbjct: 2 CNTTLLRLICWGHMLVAGS**ISLVLFRVYHLL*VSEGRSTMSQFQSVT 148
Score = 22.6 bits (43), Expect(2) = 3e-037
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / +3
Query: 950 GPGKACFLQ 924
GPG ACFLQ
Sbjct: 504 GPG*ACFLQ 530
>gb|BJ468452.1|BJ468452 BJ468452 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38n24 3', mRNA sequence
Length = 739
Score = 267 bits (578), Expect(2) = 2e-085
Identities = 107/134 (79%), Positives = 121/134 (90%)
Frame = -1 / -2
Query: 853 KKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADEL 674
+KVTEA GSGYWCEGCQKN ECSLRYIMVIK+SDPTGEAW+S+FN+ AE+I+GCSAD L
Sbjct: 645 RKVTEALGSGYWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNL 466
Query: 673 DRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKYL 494
DRIRKEEGDD + LKLKEATWVPHLFRVSV Q+EYM EKRQRITVR E+PVDFAAE++Y
Sbjct: 465 DRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQ 286
Query: 493 LEEIAKLTAC*KTQ 452
LEEIA+LT+ *K Q
Sbjct: 285 LEEIARLTSS*KMQ 244
Score = 191 bits (412), Expect(2) = 5e-059
Identities = 88/135 (65%), Positives = 93/135 (68%)
Frame = +3 / +2
Query: 453 CVF*QAVSFAISSSKYLDSAAKSTGASPLTVILCLFSFMYSCCVTLTRNR*GTQVAXXXX 632
C+F* VS AISSS YL SAAKSTG S LTVILCLFS MYS C TLTRNR GTQVA
Sbjct: 245 CIF*LEVSLAISSSWYLASAAKSTGDSLLTVILCLFSPMYSFCATLTRNRWGTQVASFSL 424
Query: 633 XXXXXXXXXXXXXXXXXXXQPMIFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHP 812
QP I SA SL D+QASPVGSE+LITMMYL+EHS FFWHP
Sbjct: 425 SWNMSSPSSFLIRSRLSALQPTILSAWSLKRDSQASPVGSETLITMMYLNEHSS*FFWHP 604
Query: 813 SHQYPDPKASVTFLL 857
SHQYPDP ASVTFL+
Sbjct: 605 SHQYPDPSASVTFLV 649
Score = 162 bits (348), Expect(2) = 3e-050
Identities = 73/133 (54%), Positives = 90/133 (67%)
Frame = +2 / +1
Query: 452 LRLLASGELRDLFKQVLGLSCEVDRCFTPHGDSLPLLVHVFMLCDADAEQVRNPGGFLEL 631
L LLA GE DL K V S +V+R PHGD LPLL HV +L +AD EQV NPGGFL+L
Sbjct: 244 LHLLAGGEPGDLLKLVPRFSSKVNRRLAPHGDPLPLLAHVLVLRNADTEQVGNPGGFLQL 423
Query: 632 ENVAVVPLLFPDPIKLVGAAANDLLRMLVEHGHPSLTSGIGELDHHDVSQRALRVILLAP 811
E V+ LLF DPIK++ AA++ L +++E G P LT I +LDHHDV QRAL ++LLAP
Sbjct: 424 ELEHVIALLFSDPIKIICTAADNPLCLVIEKGQPGLTCWIRDLDHHDVPQRALLIVLLAP 603
Query: 812 LAPVSRPKSFSHL 850
PVS + HL
Sbjct: 604 FTPVS*SECLGHL 642
Score = 125 bits (267), Expect(2) = 8e-039
Identities = 71/134 (52%), Positives = 86/134 (64%)
Frame = -3 / -1
Query: 854 QEGD*SFWVWILVRGVPKE*L*VLAEIHHGDQALRSHW*GLGVRVQRACGEDHWLQRRRA 675
++GD + ILV VP+E VL E+HHGDQ L S+ *GL V Q ED LQ R +
Sbjct: 646 KKGDRGTRIRILV*RVPEEL*GVLVEVHHGDQGL*SNR*GLAVPFQ*PSREDCRLQCR*S 467
Query: 674 *SDQERGGGRQLRSQAQGSHLGSSPVPRQRHTA*IHEREEAENHREG*STGRLRS*VQVL 495
*SDQ+RGG + +QA+GSHLGS PVP QR +H REEAE+HRE G L * +V
Sbjct: 466 *SDQKRGGR*HVPAQAEGSHLGSPPVPCQRCAERVHGREEAEDHREERVAG*LCC*SEVP 287
Query: 494 A*RDREAHRLLEDA 453
A* DR+AH LEDA
Sbjct: 286 A*GDRQAHLQLEDA 245
Score = 115 bits (246), Expect(2) = 2e-033
Identities = 62/120 (51%), Positives = 71/120 (59%)
Frame = +1 / +3
Query: 490 QASTWTQLRSRPVLHPSR*FSASSRSCIHAV*R*RGTGEEPRWLP*A*ERSCRPPPLS*S 669
QA T Q +S+P SR* SASSR C + R* GTG EPRWLP A* +C PPL *S
Sbjct: 282 QAGTSLQQQSQPATRSSR*SSASSRPCTRSAQR*HGTGGEPRWLPSA*AGTCHRPPLF*S 461
Query: 670 DQARRRCSQ*SSPHAR*TRTPKPHQWDRRA*SP*CISASTQSHSFGTPRTSIQTQKLQSP 849
DQ CS+ SS * T +PH D+R *SP*C S ST S GT TSI + +SP
Sbjct: 462 DQDYLHCSRQSSLLGH*KGTARPHLLDQRP*SP*CTSTSTPHSSSGTLHTSILIRVPRSP 641
Score = 104 bits (222), Expect(2) = 5e-032
Identities = 57/113 (50%), Positives = 64/113 (56%)
Frame = -2 / -3
Query: 825 DTGARGAKRMTLSAR*DTXXXXXSPIPLVRLGCPCSTSMRRRSLAAAPTSLIGSGKRRGT 646
DTG +GA+R SAR* T S I VR GCP S + +R AA LIGS KRR
Sbjct: 617 DTGVKGARRTMRSAR*GTSW*SRSLIQQVRPGCPFSMTKQRGLSAAVQIILIGSEKRRAM 438
Query: 645 TATFSSSRKPPGFLTCSASASHSMNT*TRRGRESP*GVKHRSTSQLSPSTCLK 487
T + SS RKPPGF TCS SA +T RRGR SP*G R T L T L+
Sbjct: 437 TCSSSS*RKPPGFPTCSVSALRRTSTWARRGRGSP*GASRRLTLLLKRGTSLR 279
Score = 70.3 bits (147), Expect(2) = 2e-085
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -1 / -1
Query: 946 QEKPVFFSLYAIISHIKPDQNMWYRACTTCNKK 848
Q+K VFFS A ISHIKPDQ MWYRACTTCNKK
Sbjct: 739 QDKXVFFSXCANISHIKPDQTMWYRACTTCNKK 641
Score = 57.9 bits (120), Expect(2) = 3e-050
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1 / +1
Query: 850 SCYRSCKHGTTYSDQA*CGL*WHTD*RKQAFP 945
SC R CK GTT+S QA*CGL WHT *RK A+P
Sbjct: 643 SCCRWCKRGTTWSGQA*CGLCWHTX*RKXAYP 738
Score = 57.9 bits (120), Expect(2) = 5e-059
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +3 / +3
Query: 849 FLLQVVQARYHIF*SGLMWLMMAYRLKKTGFS 944
FLLQVVQARYH+ SGLMWLM+A+ LKKT S
Sbjct: 642 FLLQVVQARYHMVWSGLMWLMLAHXLKKTXLS 737
Score = 56.5 bits (117), Expect(2) = 8e-039
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = -3 / -3
Query: 944 GKACFLQSVCHHKPHQA*SEYVVPCLHDL*QE 849
G ACFLQ VC HKPHQA* ++VVP LH L QE
Sbjct: 737 G*ACFLQXVCQHKPHQA*PDHVVPRLHHLQQE 642
Score = 54.2 bits (112), Expect(2) = 5e-032
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = -2 / -2
Query: 945 RKSLFSSVCMPS*ATSSLIRICGTVLARPVTRR*LKLLGLDTGARGAKR 799
R S FSS C+P+*ATSSL R CGT LA P TR+ + LG G ++
Sbjct: 738 RISXFSSACVPT*ATSSLTRPCGTALAPPATRKVTEALGSGYWCEGCQK 592
Score = 47.8 bits (98), Expect(2) = 2e-033
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +2 / +2
Query: 830 PKSFSHLLVTGRASTVPHILIRLDVAYDGIQTEENRLFL 946
P + LV G AS VPH L+RLDVAY G EEN L L
Sbjct: 623 PSASVTFLVAGGASAVPHGLVRLDVAYVGTXAEENXLIL 739
>gb|AV920899.1|AV920899 AV920899 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p23 3', mRNA sequence
Length = 648
Score = 253 bits (547), Expect = 2e-066
Identities = 101/126 (80%), Positives = 114/126 (90%)
Frame = -1 / -2
Query: 829 SGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEG 650
SGYWCEGCQKN ECSLRYIMVIK+SDPTGEAW+S+FN+ AE+I+GCSAD LDRIRKEEG
Sbjct: 620 SGYWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEG 441
Query: 649 DDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKYLLEEIAKLT 470
DD + LKLKEATWVPHLFRVSV Q+EYM EKRQRITVR E+PVDFAAE++Y LEEIA+LT
Sbjct: 440 DDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLT 261
Query: 469 AC*KTQ 452
+ *K Q
Sbjct: 260 SS*KMQ 243
Score = 175 bits (377), Expect = 5e-043
Identities = 81/126 (64%), Positives = 85/126 (67%)
Frame = +3 / +1
Query: 453 CVF*QAVSFAISSSKYLDSAAKSTGASPLTVILCLFSFMYSCCVTLTRNR*GTQVAXXXX 632
C+F* VS AISSS YL SAAKSTG S LTVILCLFS MYS C TLTRNR GTQVA
Sbjct: 244 CIF*LEVSLAISSSWYLASAAKSTGDSLLTVILCLFSPMYSFCATLTRNRWGTQVASFSL 423
Query: 633 XXXXXXXXXXXXXXXXXXXQPMIFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHP 812
QP I SA SL D+QASPVGSE+LITMMYL+EHS FFWHP
Sbjct: 424 SWNMSSPSSFLIRSRLSALQPTILSAWSLKRDSQASPVGSETLITMMYLNEHSS*FFWHP 603
Query: 813 SHQYPD 830
SHQYPD
Sbjct: 604 SHQYPD 621
Score = 159 bits (341), Expect = 5e-038
Identities = 71/125 (56%), Positives = 87/125 (69%)
Frame = +2 / +3
Query: 452 LRLLASGELRDLFKQVLGLSCEVDRCFTPHGDSLPLLVHVFMLCDADAEQVRNPGGFLEL 631
L LLA GE DL K V S +V+R PHGD LPLL HV +L +AD EQV NPGGFL+L
Sbjct: 243 LHLLAGGEPGDLLKLVPRFSSKVNRRLAPHGDPLPLLAHVLVLRNADTEQVGNPGGFLQL 422
Query: 632 ENVAVVPLLFPDPIKLVGAAANDLLRMLVEHGHPSLTSGIGELDHHDVSQRALRVILLAP 811
E V+ LLF DPIK++ AA++ L +++E G P LT I +LDHHDV QRAL ++LLAP
Sbjct: 423 ELEHVIALLFSDPIKIICTAADNPLCLVIEKGQPGLTCWIRDLDHHDVPQRALLIVLLAP 602
Query: 812 LAPVS 826
PVS
Sbjct: 603 FTPVS 617
Score = 122 bits (262), Expect = 4e-027
Identities = 69/124 (55%), Positives = 81/124 (65%)
Frame = -3 / -1
Query: 824 ILVRGVPKE*L*VLAEIHHGDQALRSHW*GLGVRVQRACGEDHWLQRRRA*SDQERGGGR 645
ILV VP+E VL E+HHGDQ L S+ *GL V Q ED LQ R +*SDQ+RGG
Sbjct: 615 ILV*RVPEEL*GVLVEVHHGDQGL*SNR*GLAVPFQ*PSREDCRLQCR*S*SDQKRGGR* 436
Query: 644 QLRSQAQGSHLGSSPVPRQRHTA*IHEREEAENHREG*STGRLRS*VQVLA*RDREAHRL 465
+ +QA+GSHLGS PVP QR +H REEAE+HRE G L * +V A* DR+AH
Sbjct: 435 HVPAQAEGSHLGSPPVPCQRCAERVHGREEAEDHREERVAG*LCC*SEVPA*GDRQAHLQ 256
Query: 464 LEDA 453
LEDA
Sbjct: 255 LEDA 244
Score = 113 bits (241), Expect = 3e-024
Identities = 60/112 (53%), Positives = 67/112 (59%)
Frame = +1 / +2
Query: 490 QASTWTQLRSRPVLHPSR*FSASSRSCIHAV*R*RGTGEEPRWLP*A*ERSCRPPPLS*S 669
QA T Q +S+P SR* SASSR C + R* GTG EPRWLP A* +C PPL *S
Sbjct: 281 QAGTSLQQQSQPATRSSR*SSASSRPCTRSAQR*HGTGGEPRWLPSA*AGTCHRPPLF*S 460
Query: 670 DQARRRCSQ*SSPHAR*TRTPKPHQWDRRA*SP*CISASTQSHSFGTPRTSI 825
DQ CS+ SS * T +PH D+R *SP*C S ST S GT TSI
Sbjct: 461 DQDYLHCSRQSSLLGH*KGTARPHLLDQRP*SP*CTSTSTPHSSSGTLHTSI 616
Score = 104 bits (222), Expect = 1e-021
Identities = 57/113 (50%), Positives = 64/113 (56%)
Frame = -2 / -3
Query: 825 DTGARGAKRMTLSAR*DTXXXXXSPIPLVRLGCPCSTSMRRRSLAAAPTSLIGSGKRRGT 646
DTG +GA+R SAR* T S I VR GCP S + +R AA LIGS KRR
Sbjct: 616 DTGVKGARRTMRSAR*GTSW*SRSLIQQVRPGCPFSMTKQRGLSAAVQIILIGSEKRRAM 437
Query: 645 TATFSSSRKPPGFLTCSASASHSMNT*TRRGRESP*GVKHRSTSQLSPSTCLK 487
T + SS RKPPGF TCS SA +T RRGR SP*G R T L T L+
Sbjct: 436 TCSSSS*RKPPGFPTCSVSALRRTSTWARRGRGSP*GASRRLTLLLKRGTSLR 278
>gb|AV922058.1|AV922058 AV922058 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j02 3', mRNA sequence
Length = 664
Score = 253 bits (547), Expect = 2e-066
Identities = 101/126 (80%), Positives = 114/126 (90%)
Frame = -1 / -1
Query: 829 SGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEG 650
SGYWCEGCQKN ECSLRYIMVIK+SDPTGEAW+S+FN+ AE+I+GCSAD LDRIRKEEG
Sbjct: 646 SGYWCEGCQKNYEECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEG 467
Query: 649 DDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKYLLEEIAKLT 470
DD + LKLKEATWVPHLFRVSV Q+EYM EKRQRITVR E+PVDFAAE++Y LEEIA+LT
Sbjct: 466 DDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLT 287
Query: 469 AC*KTQ 452
+ *K Q
Sbjct: 286 SS*KMQ 269
Score = 175 bits (377), Expect = 5e-043
Identities = 81/126 (64%), Positives = 85/126 (67%)
Frame = +3 / +3
Query: 453 CVF*QAVSFAISSSKYLDSAAKSTGASPLTVILCLFSFMYSCCVTLTRNR*GTQVAXXXX 632
C+F* VS AISSS YL SAAKSTG S LTVILCLFS MYS C TLTRNR GTQVA
Sbjct: 270 CIF*LEVSLAISSSWYLASAAKSTGDSLLTVILCLFSPMYSFCATLTRNRWGTQVASFSL 449
Query: 633 XXXXXXXXXXXXXXXXXXXQPMIFSACSLNTDTQASPVGSESLITMMYLSEHSESFFWHP 812
QP I SA SL D+QASPVGSE+LITMMYL+EHS FFWHP
Sbjct: 450 SWNMSSPSSFLIRSRLSALQPTILSAWSLKRDSQASPVGSETLITMMYLNEHSS*FFWHP 629
Query: 813 SHQYPD 830
SHQYPD
Sbjct: 630 SHQYPD 647
Score = 159 bits (341), Expect = 5e-038
Identities = 71/125 (56%), Positives = 87/125 (69%)
Frame = +2 / +2
Query: 452 LRLLASGELRDLFKQVLGLSCEVDRCFTPHGDSLPLLVHVFMLCDADAEQVRNPGGFLEL 631
L LLA GE DL K V S +V+R PHGD LPLL HV +L +AD EQV NPGGFL+L
Sbjct: 269 LHLLAGGEPGDLLKLVPRFSSKVNRRLAPHGDPLPLLAHVLVLRNADTEQVGNPGGFLQL 448
Query: 632 ENVAVVPLLFPDPIKLVGAAANDLLRMLVEHGHPSLTSGIGELDHHDVSQRALRVILLAP 811
E V+ LLF DPIK++ AA++ L +++E G P LT I +LDHHDV QRAL ++LLAP
Sbjct: 449 ELEHVIALLFSDPIKIICTAADNPLCLVIEKGQPGLTCWIRDLDHHDVPQRALLIVLLAP 628
Query: 812 LAPVS 826
PVS
Sbjct: 629 FTPVS 643
Score = 122 bits (262), Expect = 4e-027
Identities = 69/124 (55%), Positives = 81/124 (65%)
Frame = -3 / -3
Query: 824 ILVRGVPKE*L*VLAEIHHGDQALRSHW*GLGVRVQRACGEDHWLQRRRA*SDQERGGGR 645
ILV VP+E VL E+HHGDQ L S+ *GL V Q ED LQ R +*SDQ+RGG
Sbjct: 641 ILV*RVPEEL*GVLVEVHHGDQGL*SNR*GLAVPFQ*PSREDCRLQCR*S*SDQKRGGR* 462
Query: 644 QLRSQAQGSHLGSSPVPRQRHTA*IHEREEAENHREG*STGRLRS*VQVLA*RDREAHRL 465
+ +QA+GSHLGS PVP QR +H REEAE+HRE G L * +V A* DR+AH
Sbjct: 461 HVPAQAEGSHLGSPPVPCQRCAERVHGREEAEDHREERVAG*LCC*SEVPA*GDRQAHLQ 282
Query: 464 LEDA 453
LEDA
Sbjct: 281 LEDA 270
Score = 113 bits (241), Expect = 3e-024
Identities = 60/112 (53%), Positives = 67/112 (59%)
Frame = +1 / +1
Query: 490 QASTWTQLRSRPVLHPSR*FSASSRSCIHAV*R*RGTGEEPRWLP*A*ERSCRPPPLS*S 669
QA T Q +S+P SR* SASSR C + R* GTG EPRWLP A* +C PPL *S
Sbjct: 307 QAGTSLQQQSQPATRSSR*SSASSRPCTRSAQR*HGTGGEPRWLPSA*AGTCHRPPLF*S 486
Query: 670 DQARRRCSQ*SSPHAR*TRTPKPHQWDRRA*SP*CISASTQSHSFGTPRTSI 825
DQ CS+ SS * T +PH D+R *SP*C S ST S GT TSI
Sbjct: 487 DQDYLHCSRQSSLLGH*KGTARPHLLDQRP*SP*CTSTSTPHSSSGTLHTSI 642
Score = 104 bits (222), Expect = 1e-021
Identities = 57/113 (50%), Positives = 64/113 (56%)
Frame = -2 / -2
Query: 825 DTGARGAKRMTLSAR*DTXXXXXSPIPLVRLGCPCSTSMRRRSLAAAPTSLIGSGKRRGT 646
DTG +GA+R SAR* T S I VR GCP S + +R AA LIGS KRR
Sbjct: 642 DTGVKGARRTMRSAR*GTSW*SRSLIQQVRPGCPFSMTKQRGLSAAVQIILIGSEKRRAM 463
Query: 645 TATFSSSRKPPGFLTCSASASHSMNT*TRRGRESP*GVKHRSTSQLSPSTCLK 487
T + SS RKPPGF TCS SA +T RRGR SP*G R T L T L+
Sbjct: 462 TCSSSS*RKPPGFPTCSVSALRRTSTWARRGRGSP*GASRRLTLLLKRGTSLR 304
>gb|AV921048.1|AV921048 AV921048 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16l01 3', mRNA sequence
Length = 651
Score = 202 bits (436), Expect(2) = 6e-056
Identities = 82/106 (77%), Positives = 96/106 (90%)
Frame = -1 / -2
Query: 769 MVIKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRV 590
+VIK+SDPTGEAW+S+FN+ AE+I+GCSAD LDRIRKEEGDD + LKLKEATWVPHLFRV
Sbjct: 560 LVIKVSDPTGEAWLSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRV 381
Query: 589 SVTQHEYMNEKRQRITVRGEAPVDFAAESKYLLEEIAKLTAC*KTQ 452
SV Q+EYM EKRQRITVR E+PVDFAAE++Y LEEIA+LT+ *K Q
Sbjct: 380 SVAQNEYMGEKRQRITVRSESPVDFAAEARYQLEEIARLTSS*KMQ 243
Score = 125 bits (268), Expect(2) = 3e-033
Identities = 57/105 (54%), Positives = 71/105 (67%)
Frame = +2 / +3
Query: 452 LRLLASGELRDLFKQVLGLSCEVDRCFTPHGDSLPLLVHVFMLCDADAEQVRNPGGFLEL 631
L LLA GE DL K V S +V+R PHGD LPLL HV +L +AD EQV NPGGFL+L
Sbjct: 243 LHLLAGGEPGDLLKLVPRFSSKVNRRLAPHGDPLPLLAHVLVLRNADTEQVGNPGGFLQL 422
Query: 632 ENVAVVPLLFPDPIKLVGAAANDLLRMLVEHGHPSLTSGIGELDH 766
E V+ LLF DPIK++ AA++ L +++E G P LT I +LDH
Sbjct: 423 ELEHVIALLFSDPIKIICTAADNPLCLVIEKGQPGLTCWIRDLDH 557
Score = 125 bits (267), Expect = 8e-028
Identities = 63/105 (60%), Positives = 66/105 (62%)
Frame = +3 / +1
Query: 453 CVF*QAVSFAISSSKYLDSAAKSTGASPLTVILCLFSFMYSCCVTLTRNR*GTQVAXXXX 632
C+F* VS AISSS YL SAAKSTG S LTVILCLFS MYS C TLTRNR GTQVA
Sbjct: 244 CIF*LEVSLAISSSWYLASAAKSTGDSLLTVILCLFSPMYSFCATLTRNRWGTQVASFSL 423
Query: 633 XXXXXXXXXXXXXXXXXXXQPMIFSACSLNTDTQASPVGSESLIT 767
QP I SA SL D+QASPVGSE+LIT
Sbjct: 424 SWNMSSPSSFLIRSRLSALQPTILSAWSLKRDSQASPVGSETLIT 558
Score = 103 bits (219), Expect(2) = 1e-022
Identities = 58/105 (55%), Positives = 68/105 (64%)
Frame = -3 / -1
Query: 767 GDQALRSHW*GLGVRVQRACGEDHWLQRRRA*SDQERGGGRQLRSQAQGSHLGSSPVPRQ 588
GDQ L S+ *GL V Q ED LQ R +*SDQ+RGG + +QA+GSHLGS PVP Q
Sbjct: 558 GDQGL*SNR*GLAVPFQ*PSREDCRLQCR*S*SDQKRGGR*HVPAQAEGSHLGSPPVPCQ 379
Query: 587 RHTA*IHEREEAENHREG*STGRLRS*VQVLA*RDREAHRLLEDA 453
R +H REEAE+HRE G L * +V A* DR+AH LEDA
Sbjct: 378 RCAERVHGREEAEDHREERVAG*LCC*SEVPA*GDRQAHLQLEDA 244
Score = 37.3 bits (75), Expect(2) = 3e-033
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 798 FFWHPSHQYPD 830
FFWHPSHQYPD
Sbjct: 591 FFWHPSHQYPD 623
Score = 36.3 bits (73), Expect(2) = 6e-056
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1 / -3
Query: 829 SGYWCEGCQKN 797
SGYWCEGCQKN
Sbjct: 622 SGYWCEGCQKN 590
Score = 24.0 bits (46), Expect(2) = 1e-022
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1 / -1
Query: 814 EGCQKNDSECSLRYIM 767
+G ++ ECSLRYI+
Sbjct: 606 KGARRTMKECSLRYII 559
>gb|CK123944.1|CK123944 BES1824106e04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E046 5-PRIME, mRNA sequence
Length = 818
Score = 218 bits (470), Expect = 8e-056
Identities = 90/110 (81%), Positives = 102/110 (92%)
Frame = -1 / +1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ +SKGSLRIANKQFKTV+NDYE++LNENA+VEEAEGE+F+PPVQYN VKID LGPY
Sbjct: 427 GKVYYISKGSLRIANKQFKTVQNDYEMTLNENAVVEEAEGESFIPPVQYNFVKIDMLGPY 606
Query: 1411 VGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISL 1262
VG RELVDI+G VQSVSPTLS+RRKIDNE+IPKRDIVVADDS KTVT+SL
Sbjct: 607 VGSRELVDIIGXVQSVSPTLSIRRKIDNESIPKRDIVVADDSNKTVTVSL 756
Score = 142 bits (305), Expect = 5e-033
Identities = 72/105 (68%), Positives = 74/105 (70%)
Frame = +3 / -1
Query: 1260 QREIVTVLPESSATTMSRFGIVSLSIFLLTLSVGDXXXXXXXXXXXXXXXXYGPS*SILT 1439
+RE VTVL ESSATTMSRFGI SLSIFLL L VGD YGPS SILT
Sbjct: 758 KRETVTVLFESSATTMSRFGIDSLSIFLLILRVGDTL*TXPMISTNSLLPTYGPSISILT 579
Query: 1440 RLYCTGGRKVSPSASSTIAFSFSDNS*SFLTVLNCLLAILRDPFE 1574
+LYCTGG K SPSASST AFSF S*SF TVLNCL AIL DP E
Sbjct: 578 KLYCTGGMKDSPSASSTTAFSFRVIS*SFWTVLNCLFAILSDPLE 444
Score = 132 bits (283), Expect = 5e-030
Identities = 61/105 (58%), Positives = 73/105 (69%)
Frame = +2 / -3
Query: 1262 ERNSNSFARVICYNNVTLRYCLVVNLSPNTECGRYALNHTNNIYKLPATDVWS*LINLDK 1441
+RN + F VIC NNVTL L+V+L +T+ Y LN TN+IY LPAT++W INL+K
Sbjct: 756 KRNCDGFV*VICNNNVTLWN*LIVDLPSDTQSR*YTLNXTNDIY*LPATNIWPQHINLNK 577
Query: 1442 VVLHWWKESLPLCFFNNSILV**QLIVIFDCLELLVGNSKRSF*D 1576
VVLHWW E PL FFNNSIL+ LIVI D LELLV NS+R D
Sbjct: 576 VVLHWWNERFPLSFFNNSILIQGHLIVILDRLELLVCNSQRPLGD 442
Score = 114 bits (243), Expect = 2e-024
Identities = 57/99 (57%), Positives = 66/99 (66%)
Frame = +1 / -2
Query: 1261 REK**QFCQSHLLQQCHASVLSRCQSFS*H*VWEIRSEPHQQYLQAPCHRRMVLADQS*Q 1440
+EK *+FC SHL QQCHA L+ C+S *+ I SE HQ YL PC++ M A QS*Q
Sbjct: 757 KEKL*RFCLSHLQQQCHALELTHCRSSF*YSE*VIHSEXHQ*YLLTPCYQHMAPAYQS*Q 578
Query: 1441 GCIALVEGKSPPLLLQQ*HSRLVTTHSHF*LS*TACWQF 1557
CIALVE K PP LLQQ HS ++HSH S*TAC QF
Sbjct: 577 SCIALVE*KIPPQLLQQQHSHSGSSHSHSGPS*TACLQF 461
>gb|AV922079.1|AV922079 AV922079 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j24 3', mRNA sequence
Length = 534
Score = 173 bits (372), Expect = 3e-042
Identities = 71/93 (76%), Positives = 83/93 (89%)
Frame = -1 / -2
Query: 730 VSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQ 551
+S+FN+ AE+I+GCSAD LDRIRKEEGDD + LKLKEATWVPHLFRVSV Q+EYM EKRQ
Sbjct: 533 LSLFNDQAERIVGCSADNLDRIRKEEGDDMFQLKLKEATWVPHLFRVSVAQNEYMGEKRQ 354
Query: 550 RITVRGEAPVDFAAESKYLLEEIAKLTAC*KTQ 452
RITVR E+PVDFAAE++Y LEEIA+LT+ *K Q
Sbjct: 353 RITVRSESPVDFAAEARYQLEEIARLTSS*KMQ 255
Score = 109 bits (233), Expect = 4e-023
Identities = 50/92 (54%), Positives = 63/92 (68%)
Frame = +2 / +3
Query: 452 LRLLASGELRDLFKQVLGLSCEVDRCFTPHGDSLPLLVHVFMLCDADAEQVRNPGGFLEL 631
L LLA GE DL K V S +V+R PHGD LPLL HV +L +AD EQV NPGGFL+L
Sbjct: 255 LHLLAGGEPGDLLKLVPRFSSKVNRRLAPHGDPLPLLAHVLVLRNADTEQVGNPGGFLQL 434
Query: 632 ENVAVVPLLFPDPIKLVGAAANDLLRMLVEHG 727
E V+ LLF DPIK++ AA++ L +++E G
Sbjct: 435 ELEHVIALLFSDPIKIICTAADNPLCLVIEKG 530
>gb|AJ462078.1|AJ462078 AJ462078 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200004D02F1, mRNA sequence
Length = 300
Score = 123 bits (263), Expect = 3e-027
Identities = 52/70 (74%), Positives = 60/70 (85%)
Frame = -1 / +2
Query: 661 KEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKYLLEEI 482
+EEGDD + KLKEATWVPHLFRVSV Q+EYM EKRQRITVR E+PVDFAAE++ LEEI
Sbjct: 20 EEEGDDMFQFKLKEATWVPHLFRVSVAQNEYMGEKRQRITVRSESPVDFAAEARGQLEEI 199
Query: 481 AKLTAC*KTQ 452
A+LT+ *K Q
Sbjct: 200 ARLTSS*KMQ 229
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 723,873,684
Number of Sequences: 312970
Number of extensions: 12140019
Number of successful extensions: 73128
Number of sequences better than 1.0e-020: 20
length of database: 58,378,179
effective HSP length: 54
effective length of database: 41,477,799
effective search space used: 19867865721
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)