TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 278 2e-074
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 254 4e-067
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 239 1e-062
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 239 1e-062
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 239 1e-062
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 239 1e-062
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 237 7e-062
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 236 1e-061
gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA li... 207 5e-053
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 198 4e-050
gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa... 186 1e-046
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 172 1e-042
gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA li... 171 3e-042
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 153 5e-040
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 164 6e-040
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 152 2e-036
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 140 7e-034
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 138 2e-033
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 140 9e-033
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 140 9e-033
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 138 4e-032
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 138 4e-032
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 133 1e-030
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 122 2e-027
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 118 4e-026
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 115 2e-025
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 109 2e-023
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 103 9e-022
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 102 2e-021
gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA li... 100 6e-021
gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA li... 100 6e-021
gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA li... 100 6e-021
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 100 9e-021
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 278 bits (602), Expect = 2e-074
Identities = 119/153 (77%), Positives = 130/153 (84%)
Frame = +3 / +1
Query: 54 ITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVI 233
ITK +SVLVYC SWVVIF ILLVMK VSVGRR+FSAEFQLVFRL+KGLIFI F + +VI
Sbjct: 7 ITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFIVFISTIVI 186
Query: 234 LIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLL 413
LI IP MT+ DIFVCILAFMPTGWGL A++P I K GLWGSI+ALARGY+I+MGLL
Sbjct: 187 LIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMKVGLWGSIRALARGYQIIMGLL 366
Query: 414 LFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQI 512
LFTPIAFLA FVSEFQTRMLFNQAFS GLQI
Sbjct: 367 LFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 465
Score = 190 bits (410), Expect = 6e-048
Identities = 87/153 (56%), Positives = 99/153 (64%)
Frame = -2 / -3
Query: 511 ICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXXXXALIEPQSPVLWITGR 332
ICRP L AWL SI VWNSDTN AR A+GV A I+P SP I G
Sbjct: 464 ICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMIWYPRARARIDPHSPTFMIAGF 285
Query: 331 IAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNL 152
A +PHPVGMKARMQTNMS VM GI IRIT + +N + I PL +RNTSWNSALN
Sbjct: 284 SA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMKISPLSSRNTSWNSALNF 105
Query: 151 LLPTDTVFITSKITKITTHEKQ*TSTLWLSLVI 53
PTDT FITS + K+TTH+KQ*T TL + LV+
Sbjct: 104 RRPTDTAFITSNMKKMTTHDKQ*TRTLLVCLVM 6
Score = 137 bits (293), Expect = 8e-032
Identities = 61/147 (41%), Positives = 84/147 (57%)
Frame = +2 / +3
Query: 71 ECAGLLLLMGCNFCDFARYEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPW 250
E GLLL+MGC+ A E + ++Q VPA VP QG+D++ ++ H +P DP
Sbjct: 24 ERPGLLLVMGCHLLHIAGDEGCVGWSAEIQRGVPARVPAAQGADLHRVHLHHRDPYRDPP 203
Query: 251 HDGAGHICLHPCFHAHWMGFXXDXXSDPXCDPQDWALGLDQGSCPGLRDPDGTSPVHAHR 430
HD GHI LHPC HA+ MG S D + A+G+D GS + D G + +H R
Sbjct: 204 HDDPGHIRLHPCLHANGMGPAPRGSSTEAGDHEGGAVGVDPGSSSWVPDHHGAAALHPDR 383
Query: 431 LPRLXXVRVGIPDQDAVQPGVQQXSAD 511
+P + VRV +PD DA+QP +Q SAD
Sbjct: 384 VPGVVPVRV*VPDSDALQPSLQPWSAD 464
Score = 103 bits (220), Expect(2) = 4e-025
Identities = 51/118 (43%), Positives = 66/118 (55%)
Frame = -1 / -2
Query: 404 HQDLVAPGKSLDRAPEPSLVDHRXDRXXXXXQTPSSGHESKDANKYVQHRHARDRY*DYH 225
H DLV S DR P+P L D R Q PS HE KDA++YV RH D D+
Sbjct: 357 HDDLVPTS*SPDRPPQPHLHDRRLQCLSHEEQAPSRWHEGKDADEYVLDRHVGDHDKDHD 178
Query: 224 DGCKCYKYQTLDQPEH*LELCTEPSPAH*YGLHNEQNHKNYNP*EAINQHTLVVLSYL 51
G + + Q L+QPEH LEL E P + + LH++Q ++ NP*+AINQ L V Y+
Sbjct: 177 GGDEHDEDQPLEQPEHELELRAEFPPTNRHSLHHQQYEEDDNP*QAINQDALGVFGYV 4
Score = 30.9 bits (61), Expect(2) = 4e-025
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -2
Query: 512 DLQTXAERLVEQHPGL 465
DLQT AE LVE+HP L
Sbjct: 465 DLQTTAEGLVEEHPSL 418
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 254 bits (549), Expect = 4e-067
Identities = 110/153 (71%), Positives = 122/153 (79%)
Frame = +3 / +3
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L ITK +SVLVYC SWVVIF ILLVMK VSVGRR+FSAEFQLVFRL+KGLIFI
Sbjct: 174 YGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFI 353
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARG 389
F + +VILI IP MT+ DIFVCILAFMPTGWGL A++P I + GLWGSI+ALARG
Sbjct: 354 VFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARG 533
Query: 390 YEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQ 488
YEI+MGLLLFTPIAFLA FVSEFQT ML +
Sbjct: 534 YEIIMGLLLFTPIAFLAWFPFVSEFQTXMLLTR 632
Score = 173 bits (372), Expect(2) = 5e-044
Identities = 80/144 (55%), Positives = 93/144 (64%)
Frame = -2 / -3
Query: 484 LNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXXXXALIEPQSPVLWITGRIAXXIXXKP 305
+ SI VWNSDTN AR A+GV A I+P SP L I G A +P
Sbjct: 628 VKSIXVWNSDTNGNHARNAIGVKSSSPMMISYPRARARIDPHSPTLMIAGFSA*ATRSRP 449
Query: 304 HPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTVFI 125
HPVGMKARMQTNMS VM GI IRIT + +N + I PL +RNTSWNSALN PTDT FI
Sbjct: 448 HPVGMKARMQTNMSWIVMWGITIRITMVEMNTMKISPLSSRNTSWNSALNFRRPTDTAFI 269
Query: 124 TSKITKITTHEKQ*TSTLWLSLVI 53
TS + K+TTH+KQ*T TL + LV+
Sbjct: 268 TSNMKKMTTHDKQ*TRTLLVCLVM 197
Score = 125 bits (267), Expect(2) = 1e-031
Identities = 55/137 (40%), Positives = 77/137 (56%)
Frame = +2 / +2
Query: 71 ECAGLLLLMGCNFCDFARYEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPW 250
E GLLL+MGC+ A E + ++Q VPA VP QG+D++ ++ H +P DP
Sbjct: 215 ERPGLLLVMGCHLLHIAGDEGCVGRSAEIQRGVPARVPAAQGADLHRVHLHHRDPYRDPP 394
Query: 251 HDGAGHICLHPCFHAHWMGFXXDXXSDPXCDPQDWALGLDQGSCPGLRDPDGTSPVHAHR 430
HD GHI LHPC HA+ MG D + A+G+D GS +RD G + +H R
Sbjct: 395 HDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDR 574
Query: 431 LPRLXXVRVGIPDQDAV 481
+P + VRV +PD DA+
Sbjct: 575 VPGVVPVRV*VPDSDAL 625
Score = 30.9 bits (61), Expect(2) = 1e-031
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 15 RYGLVYHLNITK 50
+YGLVYHLNITK
Sbjct: 171 QYGLVYHLNITK 206
Score = 24.4 bits (47), Expect(2) = 5e-044
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2 / -1
Query: 511 ICRPLLNAWLNS 476
ICRP L AWL +
Sbjct: 654 ICRPRLKAWLRA 619
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 239 bits (517), Expect = 1e-062
Identities = 101/137 (73%), Positives = 113/137 (82%)
Frame = +3 / -3
Query: 153 RFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAI 332
+FSAEFQLVFRL+KGLIFI F + +VILI IP MT+ DIFVCILAFMPTGWGL A+
Sbjct: 624 KFSAEFQLVFRLLKGLIFIVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQAL 445
Query: 333 RPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQI 512
+P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQI
Sbjct: 444 KPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 265
Query: 513 SRIXXGHKKDXXTXNKE 563
SRI GHKKD +K+
Sbjct: 264 SRILGGHKKDRAARSKD 214
Score = 168 bits (361), Expect = 3e-041
Identities = 77/136 (56%), Positives = 84/136 (61%)
Frame = -2 / +2
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 215 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 394
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N +
Sbjct: 395 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMK 574
Query: 202 IRPLINRNTSWNSALN 155
I PL +RNTSWNSALN
Sbjct: 575 ISPLSSRNTSWNSALN 622
Score = 127 bits (272), Expect = 6e-029
Identities = 57/136 (41%), Positives = 77/136 (56%)
Frame = +2 / -2
Query: 152 KVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSD 331
++Q VPA VP QG+D++ ++ H +P DP HD GHI LHPC HA+ MG
Sbjct: 625 EIQRGVPARVPAAQGADLHRVHLHHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGT 446
Query: 332 PXCDPQDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSAD 511
D + A+G+D GS +RD G + +H R+P + VRV +PD DA+QPG+Q SAD
Sbjct: 445 EAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSAD 266
Query: 512 LPYXXXTQERXXXXEQ 559
L QE EQ
Sbjct: 265 LEDPGWAQEGPGGAEQ 218
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 239 bits (517), Expect = 1e-062
Identities = 101/137 (73%), Positives = 113/137 (82%)
Frame = +3 / -1
Query: 153 RFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAI 332
+FSAEFQLVFRL+KGLIFI F + +VILI IP MT+ DIFVCILAFMPTGWGL A+
Sbjct: 678 KFSAEFQLVFRLLKGLIFIVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQAL 499
Query: 333 RPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQI 512
+P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQI
Sbjct: 498 KPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 319
Query: 513 SRIXXGHKKDXXTXNKE 563
SRI GHKKD +K+
Sbjct: 318 SRILGGHKKDRAARSKD 268
Score = 168 bits (361), Expect = 3e-041
Identities = 77/136 (56%), Positives = 84/136 (61%)
Frame = -2 / +2
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 269 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 448
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N +
Sbjct: 449 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMK 628
Query: 202 IRPLINRNTSWNSALN 155
I PL +RNTSWNSALN
Sbjct: 629 ISPLSSRNTSWNSALN 676
Score = 127 bits (271), Expect = 9e-029
Identities = 57/135 (42%), Positives = 76/135 (56%)
Frame = +2 / -3
Query: 155 VQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSDP 334
+Q VPA VP QG+D++ ++ H +P DP HD GHI LHPC HA+ MG
Sbjct: 676 IQRGVPARVPAAQGADLHRVHLHHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTE 497
Query: 335 XCDPQDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSADL 514
D + A+G+D GS +RD G + +H R+P + VRV +PD DA+QPG+Q SADL
Sbjct: 496 AGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADL 317
Query: 515 PYXXXTQERXXXXEQ 559
QE EQ
Sbjct: 316 EDPGWAQEGPGGAEQ 272
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 239 bits (517), Expect = 1e-062
Identities = 101/137 (73%), Positives = 113/137 (82%)
Frame = +3 / -3
Query: 153 RFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAI 332
+FSAEFQLVFRL+KGLIFI F + +VILI IP MT+ DIFVCILAFMPTGWGL A+
Sbjct: 648 KFSAEFQLVFRLLKGLIFIVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQAL 469
Query: 333 RPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQI 512
+P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQI
Sbjct: 468 KPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 289
Query: 513 SRIXXGHKKDXXTXNKE 563
SRI GHKKD +K+
Sbjct: 288 SRILGGHKKDRAARSKD 238
Score = 168 bits (361), Expect = 3e-041
Identities = 77/136 (56%), Positives = 84/136 (61%)
Frame = -2 / +2
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 239 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 418
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N +
Sbjct: 419 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMK 598
Query: 202 IRPLINRNTSWNSALN 155
I PL +RNTSWNSALN
Sbjct: 599 ISPLSSRNTSWNSALN 646
Score = 127 bits (272), Expect = 6e-029
Identities = 57/136 (41%), Positives = 77/136 (56%)
Frame = +2 / -2
Query: 152 KVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSD 331
++Q VPA VP QG+D++ ++ H +P DP HD GHI LHPC HA+ MG
Sbjct: 649 EIQRGVPARVPAAQGADLHRVHLHHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGT 470
Query: 332 PXCDPQDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSAD 511
D + A+G+D GS +RD G + +H R+P + VRV +PD DA+QPG+Q SAD
Sbjct: 469 EAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSAD 290
Query: 512 LPYXXXTQERXXXXEQ 559
L QE EQ
Sbjct: 289 LEDPGWAQEGPGGAEQ 242
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 239 bits (517), Expect = 1e-062
Identities = 101/137 (73%), Positives = 113/137 (82%)
Frame = +3 / -2
Query: 153 RFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAI 332
+FSAEFQLVFRL+KGLIFI F + +VILI IP MT+ DIFVCILAFMPTGWGL A+
Sbjct: 632 KFSAEFQLVFRLLKGLIFIVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQAL 453
Query: 333 RPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQI 512
+P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQI
Sbjct: 452 KPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 273
Query: 513 SRIXXGHKKDXXTXNKE 563
SRI GHKKD +K+
Sbjct: 272 SRILGGHKKDRAARSKD 222
Score = 168 bits (361), Expect = 3e-041
Identities = 77/136 (56%), Positives = 84/136 (61%)
Frame = -2 / +1
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 223 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 402
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N +
Sbjct: 403 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMK 582
Query: 202 IRPLINRNTSWNSALN 155
I PL +RNTSWNSALN
Sbjct: 583 ISPLSSRNTSWNSALN 630
Score = 127 bits (272), Expect = 6e-029
Identities = 57/136 (41%), Positives = 77/136 (56%)
Frame = +2 / -1
Query: 152 KVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSD 331
++Q VPA VP QG+D++ ++ H +P DP HD GHI LHPC HA+ MG
Sbjct: 633 EIQRGVPARVPAAQGADLHRVHLHHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGT 454
Query: 332 PXCDPQDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSAD 511
D + A+G+D GS +RD G + +H R+P + VRV +PD DA+QPG+Q SAD
Sbjct: 453 EAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSAD 274
Query: 512 LPYXXXTQERXXXXEQ 559
L QE EQ
Sbjct: 273 LEDPGWAQEGPGGAEQ 226
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 237 bits (511), Expect = 7e-062
Identities = 100/136 (73%), Positives = 112/136 (82%)
Frame = +3 / -1
Query: 156 FSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIR 335
FSA+FQLVFRL+KGLIFI F + +VILI IP MT+ DIFVCILAFMPTGWGL A++
Sbjct: 623 FSAKFQLVFRLLKGLIFIVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALK 444
Query: 336 PVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQIS 515
P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQIS
Sbjct: 443 PAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQIS 264
Query: 516 RIXXGHKKDXXTXNKE 563
RI GHKKD +K+
Sbjct: 263 RILGGHKKDRAARSKD 216
Score = 162 bits (349), Expect = 2e-039
Identities = 75/135 (55%), Positives = 82/135 (60%)
Frame = -2 / +1
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 217 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 396
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N +
Sbjct: 397 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMK 576
Query: 202 IRPLINRNTSWNSAL 158
I PL +RNTSWN AL
Sbjct: 577 ISPLSSRNTSWNFAL 621
Score = 126 bits (270), Expect = 1e-028
Identities = 57/134 (42%), Positives = 75/134 (55%)
Frame = +2 / -3
Query: 158 QCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSDPX 337
Q VPA VP QG+D++ ++ H +P DP HD GHI LHPC HA+ MG
Sbjct: 621 QREVPARVPAAQGADLHRVHLHHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEA 442
Query: 338 CDPQDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSADLP 517
D + A+G+D GS +RD G + +H R+P + VRV +PD DA+QPG+Q SADL
Sbjct: 441 GDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLE 262
Query: 518 YXXXTQERXXXXEQ 559
QE EQ
Sbjct: 261 DPGWAQEGPGGAEQ 220
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 236 bits (509), Expect = 1e-061
Identities = 100/136 (73%), Positives = 111/136 (81%)
Frame = +3 / -1
Query: 156 FSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIR 335
FSA FQLVFRL+KGLIFI F + +VILI IP MT+ DIFVCILAFMPTGWGL A++
Sbjct: 623 FSAXFQLVFRLLKGLIFIVFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALK 444
Query: 336 PVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQIS 515
P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQIS
Sbjct: 443 PAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQIS 264
Query: 516 RIXXGHKKDXXTXNKE 563
RI GHKKD +K+
Sbjct: 263 RILGGHKKDRAARSKD 216
Score = 163 bits (351), Expect = 8e-040
Identities = 75/135 (55%), Positives = 82/135 (60%)
Frame = -2 / +1
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 217 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 396
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N +
Sbjct: 397 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMK 576
Query: 202 IRPLINRNTSWNSAL 158
I PL +RNTSWN AL
Sbjct: 577 ISPLSSRNTSWNXAL 621
Score = 125 bits (268), Expect = 2e-028
Identities = 56/131 (42%), Positives = 74/131 (56%)
Frame = +2 / -3
Query: 167 VPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSDPXCDP 346
VPA VP QG+D++ ++ H +P DP HD GHI LHPC HA+ MG D
Sbjct: 612 VPARVPAAQGADLHRVHLHHRDPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDH 433
Query: 347 QDWALGLDQGSCPGLRDPDGTSPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSADLPYXX 526
+ A+G+D GS +RD G + +H R+P + VRV +PD DA+QPG+Q SADL
Sbjct: 432 EGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPG 253
Query: 527 XTQERXXXXEQ 559
QE EQ
Sbjct: 252 WAQEGPGGAEQ 220
>gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 5', mRNA sequence
Length = 495
Score = 207 bits (447), Expect = 5e-053
Identities = 88/124 (70%), Positives = 99/124 (79%)
Frame = +3 / +2
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L ITK +SVLVYC SWVVIF ILLVMK VSVGRR+FSAEFQLVFRL+KGLIFI
Sbjct: 122 YGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFI 301
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARG 389
F + +VILI IP MT+ DIFVCILAFMPTGWGL A++P I + GLWGSI+ALARG
Sbjct: 302 VFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARG 481
Query: 390 YEIL 401
YEI+
Sbjct: 482 YEII 493
Score = 145 bits (312), Expect = 2e-034
Identities = 65/106 (61%), Positives = 76/106 (71%)
Frame = -2 / -1
Query: 370 IEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPL 191
I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N + I PL
Sbjct: 462 IDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMKISPL 283
Query: 190 INRNTSWNSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLVI 53
+RNTSWNSALN PTDT FITS + K+TTH+KQ*T TL + LV+
Sbjct: 282 SSRNTSWNSALNFRRPTDTAFITSNMKKMTTHDKQ*TRTLLVCLVM 145
Score = 100 bits (212), Expect(2) = 4e-024
Identities = 44/109 (40%), Positives = 60/109 (55%)
Frame = +2 / +1
Query: 71 ECAGLLLLMGCNFCDFARYEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPW 250
E GLLL+MGC+ A E + ++Q VPA VP QG+D++ ++ H +P DP
Sbjct: 163 ERPGLLLVMGCHLLHIAGDEGCVGRSAEIQRGVPARVPAAQGADLHRVHLHHRDPYRDPP 342
Query: 251 HDGAGHICLHPCFHAHWMGFXXDXXSDPXCDPQDWALGLDQGSCPGLRD 397
HD GHI LHPC HA+ MG D + A+G+D GS +RD
Sbjct: 343 HDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRD 489
Score = 30.9 bits (61), Expect(2) = 4e-024
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 15 RYGLVYHLNITK 50
+YGLVYHLNITK
Sbjct: 119 QYGLVYHLNITK 154
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 198 bits (426), Expect = 4e-050
Identities = 83/113 (73%), Positives = 92/113 (81%)
Frame = +3 / -1
Query: 225 VVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILM 404
+VILI IP MT+ DIFVCILAFMPTGWGL A++P I + GLWGSI+ALARGYEI+M
Sbjct: 616 IVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIM 437
Query: 405 GLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE 563
GLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQISRI GHKKD +K+
Sbjct: 436 GLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 278
Score = 133 bits (286), Expect = 7e-031
Identities = 63/112 (56%), Positives = 66/112 (58%)
Frame = -2 / +3
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 279 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 458
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRIT 227
A I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT
Sbjct: 459 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRIT 614
Score = 100 bits (214), Expect = 6e-021
Identities = 47/110 (42%), Positives = 60/110 (54%)
Frame = +2 / -3
Query: 230 NPNSDPWHDGAGHICLHPCFHAHWMGFXXDXXSDPXCDPQDWALGLDQGSCPGLRDPDGT 409
+P DP HD GHI LHPC HA+ MG D + A+G+D GS +RD G
Sbjct: 611 DPYRDPPHDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGA 432
Query: 410 SPVHAHRLPRLXXVRVGIPDQDAVQPGVQQXSADLPYXXXTQERXXXXEQ 559
+ +H R+P + VRV +PD DA+QPG+Q SADL QE EQ
Sbjct: 431 AALHPDRVPGVVPVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQ 282
>gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022K21f, mRNA sequence
Length = 507
Score = 186 bits (400), Expect = 1e-046
Identities = 79/113 (69%), Positives = 88/113 (77%)
Frame = +3 / +2
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L ITK +SVLVYC SWVVIF ILLVMK VSVGRR+FSAEFQLVFRL+KGLIFI
Sbjct: 167 YGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFI 346
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGS 368
F + +VILI IP MT+ DIFVCILAFMPTGWGL A++P I + GLWGS
Sbjct: 347 VFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGS 505
Score = 145 bits (312), Expect = 2e-034
Identities = 65/106 (61%), Positives = 76/106 (71%)
Frame = -2 / -1
Query: 370 IEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPL 191
I+P SP L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N + I PL
Sbjct: 507 IDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMKISPL 328
Query: 190 INRNTSWNSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLVI 53
+RNTSWNSALN PTDT FITS + K+TTH+KQ*T TL + LV+
Sbjct: 327 SSRNTSWNSALNFRRPTDTAFITSNMKKMTTHDKQ*TRTLLVCLVM 190
Score = 92.3 bits (195), Expect(2) = 9e-022
Identities = 40/100 (40%), Positives = 55/100 (55%)
Frame = +2 / +1
Query: 71 ECAGLLLLMGCNFCDFARYEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPW 250
E GLLL+MGC+ A E + ++Q VPA VP QG+D++ ++ H +P DP
Sbjct: 208 ERPGLLLVMGCHLLHIAGDEGCVGRSAEIQRGVPARVPAAQGADLHRVHLHHRDPYRDPP 387
Query: 251 HDGAGHICLHPCFHAHWMGFXXDXXSDPXCDPQDWALGLD 370
HD GHI LHPC HA+ MG D + A+G+D
Sbjct: 388 HDDPGHIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVD 507
Score = 30.9 bits (61), Expect(2) = 9e-022
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +2
Query: 15 RYGLVYHLNITK 50
+YGLVYHLNITK
Sbjct: 164 QYGLVYHLNITK 199
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 172 bits (371), Expect = 1e-042
Identities = 72/97 (74%), Positives = 79/97 (81%)
Frame = +3 / -2
Query: 273 VCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXF 452
VCILAFMPTGWGL A++P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA F
Sbjct: 507 VCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPF 328
Query: 453 VSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE 563
VSEFQTRMLFNQAFS GLQISRI GHKKD +K+
Sbjct: 327 VSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 217
Score = 113 bits (242), Expect = 9e-025
Identities = 52/97 (53%), Positives = 55/97 (56%)
Frame = -2 / +2
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SFLCP I EICRP L AWL SI VWNSDTN AR A+GV
Sbjct: 218 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 397
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQT 272
A I+P SP L I G A +PHPVGMKARMQT
Sbjct: 398 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQT 508
>gb|AV926824.1|AV926824 AV926824 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 5', mRNA sequence
Length = 413
Score = 171 bits (369), Expect = 3e-042
Identities = 74/105 (70%), Positives = 82/105 (78%)
Frame = +3 / +3
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L ITK +SVLVYC SWVVIF ILLVMK VSVGRR+FSAEFQLVFRL+KGLIFI
Sbjct: 93 YGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFI 272
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVI 344
F + +VILI IP MT+ DIFVCILAFMPTGWGL A++P I
Sbjct: 273 VFISTIVILIVIPHMTIQDIFVCILAFMPTGWGLLLVAQALKPAI 407
Score = 134 bits (288), Expect = 4e-031
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2 / -2
Query: 349 LWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSW 170
L I G A +PHPVGMKARMQTNMS VM GI IRIT + +N + I PL +RNTSW
Sbjct: 412 LMIAGFSA*ATRSRPHPVGMKARMQTNMSWIVMWGITIRITMVEMNTMKISPLSSRNTSW 233
Query: 169 NSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLVI 53
NSALN PTDT FITS + K+TTH+KQ*T TL + LV+
Sbjct: 232 NSALNFRRPTDTAFITSNMKKMTTHDKQ*TRTLLVCLVM 116
Score = 89.0 bits (188), Expect(2) = 8e-021
Identities = 36/79 (45%), Positives = 48/79 (60%)
Frame = +2 / +2
Query: 71 ECAGLLLLMGCNFCDFARYEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPW 250
E GLLL+MGC+ A E + ++Q VPA VP QG+D++ ++ H +P DP
Sbjct: 134 ERPGLLLVMGCHLLHIAGDEGCVGRSAEIQRGVPARVPAAQGADLHRVHLHHRDPYRDPP 313
Query: 251 HDGAGHICLHPCFHAHWMG 307
HD GHI LHPC HA+ MG
Sbjct: 314 HDDPGHIRLHPCLHANGMG 370
Score = 30.9 bits (61), Expect(2) = 8e-021
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / +3
Query: 15 RYGLVYHLNITK 50
+YGLVYHLNITK
Sbjct: 90 QYGLVYHLNITK 125
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 153 bits (328), Expect(2) = 5e-040
Identities = 68/78 (87%), Positives = 72/78 (92%)
Frame = +3 / +2
Query: 66 NQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAI 245
NQSVLVY FSWVVI V+LLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITF +I++IL AI
Sbjct: 419 NQSVLVYGFSWVVILVMLLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFISILIILTAI 598
Query: 246 PGMTVLDIFVCILAFMPT 299
MTVLDIFVCILAFMPT
Sbjct: 599 AHMTVLDIFVCILAFMPT 652
Score = 145 bits (312), Expect(2) = 8e-036
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = -2 / -1
Query: 301 PVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTVFIT 122
PVGMKARMQT MS TVM IA++I M +NV+NI PLI+R TSWNSALNLLLPTDTVFIT
Sbjct: 654 PVGMKARMQTKMSRTVM*AIAVKIIRMEMNVMNISPLISRKTSWNSALNLLLPTDTVFIT 475
Query: 121 SKITKITTHEKQ*TSTLWLSLVIFF 47
S +T+ITTHEK *TSTLWL ++ F
Sbjct: 474 SSMTRITTHEKP*TSTLWLYCLVIF 400
Score = 115 bits (245), Expect(2) = 8e-027
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = -1 / -3
Query: 299 SGHESKDANKYVQHRHARDRY*DYHDGCKCYKYQTLDQPEH*LELCTEPSPAH*YGLHNE 120
S HES+DA+K V+ H D *DY DG +CY+Y+ LDQPE LEL EP PA *+GLHN+
Sbjct: 652 SRHESEDADKDVEDCHVSDCC*DYKDGDECYEYKPLDQPEDELELRAEPPPAD*HGLHNK 473
Query: 119 QNHKNYNP*EAINQHTLVVL 60
Q+ +N+NP*EA+NQH LV+L
Sbjct: 472 QHDQNHNP*EAVNQHALVIL 413
Score = 104 bits (221), Expect(2) = 5e-023
Identities = 44/78 (56%), Positives = 54/78 (69%)
Frame = +2 / +1
Query: 68 PECAGLLLLMGCNFCDFARYEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDP 247
P+ AGL LLMGC+ A YEDR+S QE+VQ VPA +P DQG+ I+NI+ H N NS+
Sbjct: 421 PKRAGLRLLMGCDSGHAACYEDRVSRQEEVQRGVPARLPADQGAYIHNIHLHPYNLNSNR 600
Query: 248 WHDGAGHICLHPCFHAHW 301
HD H+CLHP FHA W
Sbjct: 601 SHDSPRHLCLHPRFHADW 654
Score = 31.3 bits (62), Expect(2) = 5e-040
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3 / +2
Query: 15 RYGLVYHLNITKK 53
+YGLVYHLNITK+
Sbjct: 377 QYGLVYHLNITKQ 415
Score = 24.9 bits (48), Expect(2) = 8e-027
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / -3
Query: 62 LSYLLRYIQMIHKSV 18
L LL YIQMIHK V
Sbjct: 424 LVILLGYIQMIHKPV 380
Score = 24.4 bits (47), Expect(2) = 8e-036
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2 / -1
Query: 46 VIFR*YTSPY 17
VIF+*YTSPY
Sbjct: 408 VIFK*YTSPY 379
Score = 23.1 bits (44), Expect(2) = 5e-023
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +1
Query: 17 VRTCVSSEYNE 49
VR CVS EYN+
Sbjct: 379 VRACVSFEYNQ 411
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 164 bits (352), Expect = 6e-040
Identities = 72/105 (68%), Positives = 79/105 (75%)
Frame = +3 / +1
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L ITK +SVLVYC SWVVIF ILLVMK VSVGRR+FSAEFQLVFRL+KGLIFI
Sbjct: 292 YGLVYHLNITKHTKSVLVYCLSWVVIFFILLVMKAVSVGRRKFSAEFQLVFRLLKGLIFI 471
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVI 344
F + +VILI IP MT+ DIFV ILAFMPTGWGL + P I
Sbjct: 472 VFISTIVILIVIPHMTIQDIFVWILAFMPTGWGLLLVGSGLEPAI 606
Score = 128 bits (275), Expect = 2e-029
Identities = 58/104 (55%), Positives = 70/104 (67%)
Frame = -2 / -2
Query: 364 PQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLIN 185
P + I G +PHPVGMKAR+ TNMS VM GI IRIT + +N + I PL +
Sbjct: 626 PLASTPMIAGSSPEPTRSRPHPVGMKARIHTNMSWIVMWGITIRITMVEMNTMKISPLSS 447
Query: 184 RNTSWNSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLVI 53
RNTSWNSALN PTDT FITS + K+TTH+KQ*T TL + LV+
Sbjct: 446 RNTSWNSALNFRRPTDTAFITSNMKKMTTHDKQ*TRTLLVCLVM 315
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 152 bits (326), Expect = 2e-036
Identities = 62/103 (60%), Positives = 75/103 (72%)
Frame = +3 / +3
Query: 258 VLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFL 437
+ DI VC LAF+PTGWG+ P+ TGLWGS++ALAR YE++MG+LLFTPI L
Sbjct: 27 IKDILVCFLAFLPTGWGILLIAQPCIPLFRVTGLWGSVRALARAYEVIMGMLLFTPITVL 206
Query: 438 AXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
+ FVSEFQTRMLFNQAFS GLQISRI G KK+ + K+*
Sbjct: 207 SWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKKERASSTKD* 335
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 140 bits (300), Expect(2) = 7e-034
Identities = 55/125 (44%), Positives = 85/125 (68%)
Frame = +3 / +3
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ IAI + V+D+ ILA++PTGWG+ A +P++
Sbjct: 5454 FQLFLRLVKSIALLVVLAGLVVAIAITRLAVVDVLASILAYVPTGWGILSIAVAWKPIVK 5633
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
+ GLW ++++LAR Y+ MG+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 5634 RLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 5813
Query: 528 GHKKD 542
G+ ++
Sbjct: 5814 GNNQN 5828
Score = 23.5 bits (45), Expect(2) = 7e-034
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3 / +3
Query: 51 KITKDNQSVLVYCFSWVVIFVILLVMKTVSV 143
K + ++ ++LVY SW V+ + +++ S+
Sbjct: 5340 KASNESTALLVYWVSWAVLGGLFVLLMVFSL 5432
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 138 bits (297), Expect(2) = 2e-033
Identities = 55/121 (45%), Positives = 82/121 (67%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ IAI + V+D+ ILA++PTGWG+ A +P++
Sbjct: 284 FQLFLRLVKSIALLVVLAGLVVAIAITRLAVVDVLASILAYVPTGWGILSIAVAWKPIVK 463
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
+ GLW ++++LAR Y+ MG+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 464 RLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 643
Query: 528 G 530
G
Sbjct: 644 G 646
Score = 23.5 bits (45), Expect(2) = 2e-033
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3 / +2
Query: 51 KITKDNQSVLVYCFSWVVIFVILLVMKTVSV 143
K + ++ ++LVY SW V+ + +++ S+
Sbjct: 170 KASNESTALLVYWVSWAVLGGLFVLLMVFSL 262
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 140 bits (300), Expect = 9e-033
Identities = 55/125 (44%), Positives = 85/125 (68%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ IAI + V+D+ ILA++PTGWG+ A +P++
Sbjct: 62 FQLFLRLVKSIALLVVLAGLVVAIAITRLAVVDVLASILAYVPTGWGILSIAVAWKPIVK 241
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
+ GLW ++++LAR Y+ MG+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 242 RLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 421
Query: 528 GHKKD 542
G+ ++
Sbjct: 422 GNNQN 436
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 140 bits (300), Expect = 9e-033
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = +3 / -1
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A++P I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GL
Sbjct: 538 ALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGL 359
Query: 507 QISRIXXGHKKDXXTXNKE 563
QISRI GHKKD +K+
Sbjct: 358 QISRILGGHKKDRAARSKD 302
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 138 bits (295), Expect = 4e-032
Identities = 55/125 (44%), Positives = 84/125 (67%)
Frame = +3 / -2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + A +V+ IAI + V+D+ ILA++PTGWG+ A +P++
Sbjct: 598 FQLFLRLVKSNALLVVLAGLVVAIAITRLAVVDVLASILAYVPTGWGILSIAVAWKPIVK 419
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
+ GLW ++++LAR Y+ MG+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 418 RLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 239
Query: 528 GHKKD 542
G+ ++
Sbjct: 238 GNNQN 224
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 138 bits (295), Expect = 4e-032
Identities = 58/79 (73%), Positives = 65/79 (82%)
Frame = +3 / -3
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A++P I + GLWGSI+ALARGYEI+MG LLFTPIAFLA FVSEFQTRMLFNQAFS GL
Sbjct: 353 ALKPAIMRVGLWGSIRALARGYEIIMGXLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGL 174
Query: 507 QISRIXXGHKKDXXTXNKE 563
QISRI GHKKD +K+
Sbjct: 173 QISRILGGHKKDRAARSKD 117
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 133 bits (285), Expect = 1e-030
Identities = 57/74 (77%), Positives = 62/74 (83%)
Frame = +3 / -1
Query: 342 IHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRI 521
I + GLWGSI+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQISRI
Sbjct: 413 IMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI 234
Query: 522 XXGHKKDXXTXNKE 563
GHKKD +K+
Sbjct: 233 LGGHKKDRAARSKD 192
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 122 bits (261), Expect = 2e-027
Identities = 47/102 (46%), Positives = 72/102 (70%)
Frame = +3 / -3
Query: 237 IAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLL 416
IAI + V+D+ ILA++PTGWG+ A +P++ + GLW ++++LAR Y+ MG+++
Sbjct: 616 IAITRLAVVDVLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMII 437
Query: 417 FTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKD 542
F PIA + F+S FQTR+LFNQAFS GL+IS I G+ ++
Sbjct: 436 FVPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNQN 311
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 118 bits (252), Expect = 4e-026
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = +3 / +1
Query: 351 TGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXG 530
TGLWGS++ALAR YE++MG+LLFTPI L+ FVSEFQTRMLFNQAFS GLQISRI G
Sbjct: 13 TGLWGSVRALARAYEVIMGMLLFTPITVLSWFPFVSEFQTRMLFNQAFSRGLQISRILGG 192
Query: 531 HKKDXXTXNKE* 566
KK+ + K+*
Sbjct: 193 QKKERASSTKD* 228
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 115 bits (246), Expect = 2e-025
Identities = 50/64 (78%), Positives = 54/64 (84%)
Frame = +3 / -3
Query: 372 KALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXT 551
+ALARGYEI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQISRI GHKKD
Sbjct: 498 RALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAA 319
Query: 552 XNKE 563
+K+
Sbjct: 318 RSKD 307
>gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cd06, mRNA sequence
Length = 639
Score = 109 bits (232), Expect = 2e-023
Identities = 41/94 (43%), Positives = 65/94 (69%)
Frame = +3 / -1
Query: 261 LDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLA 440
+D+ ILA++PTGWG+ A +P++ + GLW ++++LA Y+ MG+++F PIA +
Sbjct: 630 VDVLASILAYVPTGWGIFSIAVAWKPIVKRLGLWKTVRSLAPLYDAGMGMIIFVPIAICS 451
Query: 441 XXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKD 542
F+S FQTR+LFNQAFS GL+I I G+ ++
Sbjct: 450 WFPFISPFQTRLLFNQAFSRGLEIFFILAGNNQN 349
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 103 bits (220), Expect = 9e-022
Identities = 42/95 (44%), Positives = 61/95 (64%)
Frame = +3 / +3
Query: 252 MTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 431
+T+ D+F LAF+ TGW + + V+ GLW S++ ++R Y+ MG ++F PI
Sbjct: 66 LTIADLFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIV 245
Query: 432 FLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
F + FVS FQ+R+LFNQAFS GL+IS I G+K
Sbjct: 246 FFSWFPFVSTFQSRILFNQAFSRGLEISLILAGNK 350
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 102 bits (218), Expect = 2e-021
Identities = 42/94 (44%), Positives = 60/94 (63%)
Frame = +3 / -1
Query: 255 TVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAF 434
T+ D+F LAF+ TGW + + V+ GLW S++ ++R Y+ MG ++F PI F
Sbjct: 576 TIADLFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVF 397
Query: 435 LAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
+ FVS FQ+R+LFNQAFS GL+IS I G+K
Sbjct: 396 FSWFPFVSTFQSRILFNQAFSRGLEISLILAGNK 295
>gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 3', mRNA sequence
Length = 393
Score = 100 bits (214), Expect = 6e-021
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = +3 / -2
Query: 393 EILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE 563
EI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQISRI GHKKD +K+
Sbjct: 392 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 222
>gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 3', mRNA sequence
Length = 415
Score = 100 bits (214), Expect = 6e-021
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = +3 / -2
Query: 393 EILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE 563
EI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQISRI GHKKD +K+
Sbjct: 414 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 244
>gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 3', mRNA sequence
Length = 414
Score = 100 bits (214), Expect = 6e-021
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = +3 / -2
Query: 393 EILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE 563
EI+MGLLLFTPIAFLA FVSEFQTRMLFNQAFS GLQISRI GHKKD +K+
Sbjct: 413 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 243
>gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02df07, mRNA sequence
Length = 676
Score = 100 bits (213), Expect = 9e-021
Identities = 41/93 (44%), Positives = 59/93 (63%)
Frame = +3 / -2
Query: 258 VLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFL 437
+ D+F LAF+ TGW + + V+ GLW S++ ++R Y+ MG ++F PI F
Sbjct: 666 IADLFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFF 487
Query: 438 AXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
+ FVS FQ+R+LFNQAFS GL+IS I G+K
Sbjct: 486 SWFPFVSTFQSRILFNQAFSRGLEISLILAGNK 388
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 256,289,549
Number of Sequences: 312970
Number of extensions: 3688604
Number of successful extensions: 32797
Number of sequences better than 1.0e-020: 42
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7847091165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)