TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.2
(1076 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 406 e-115
gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. v... 369 e-101
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 311 2e-091
gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. v... 327 8e-089
gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. v... 303 2e-081
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 295 2e-079
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 267 1e-078
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 293 1e-078
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 258 2e-077
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 258 2e-077
gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA li... 288 3e-077
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 252 1e-075
gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-a... 226 2e-073
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 266 1e-070
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 232 1e-069
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 230 5e-069
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 227 4e-068
gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. v... 215 1e-064
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 215 2e-064
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 215 2e-064
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 215 2e-064
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 204 2e-061
gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. v... 219 2e-056
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 178 2e-053
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 166 6e-050
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 134 7e-049
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 131 8e-043
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 137 8e-043
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 112 1e-040
gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA li... 134 2e-040
gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedl... 101 3e-040
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 131 4e-040
gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. v... 128 1e-038
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 118 4e-036
gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. v... 118 1e-035
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 131 9e-032
gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. v... 108 4e-031
gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 ... 66 7e-030
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 129 2e-029
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 129 2e-029
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 127 1e-028
gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA li... 76 7e-028
gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. v... 95 4e-027
gb|BE196054.2|BE196054 HVSMEh0091D21f Hordeum vulgare 5-45 ... 76 1e-025
gb|BG415324.2|BG415324 HVSMEk0006A22f Hordeum vulgare testa... 115 6e-025
gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. v... 110 1e-024
gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA li... 111 5e-024
gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. v... 109 3e-023
gb|CB859263.1|CB859263 HI09O13w HI Hordeum vulgare subsp. v... 108 3e-023
gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. v... 107 1e-022
gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed D... 78 7e-021
emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragme... 52 8e-021
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 406 bits (880), Expect(2) = e-115
Identities = 161/204 (78%), Positives = 182/204 (89%)
Frame = -1 / +2
Query: 1013 ISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIFRDGVS 834
ISKYRA+V TQSPK EM+ SLFKPR T+DDGLIRE LIDFYTSSGKRKPD VIIFRDGVS
Sbjct: 5 ISKYRATVHTQSPKQEMMASLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVIIFRDGVS 184
Query: 833 ESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAGTVVDN 654
SQF QV+NIEL+QIIEACK LD+KW PKFT+I+AQKNHHT+FF P+NVP GTVVD
Sbjct: 185 *SQFTQVINIELEQIIEACKCLDDKWEPKFTVIVAQKNHHTRFFQTNSPENVPPGTVVDK 364
Query: 653 KVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAIS 474
+VCHP+NFDFYMC+HAGMIGT+RPTHYH+LHDEIGF+ D+LQE VHSLSYVYQRSTTAIS
Sbjct: 365 QVCHPKNFDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAIS 544
Query: 473 VVAPICYAHLAAAQVGQFIKFDEM 402
V API YAH+AAA VG F+KF++M
Sbjct: 545 VAAPIAYAHMAAAHVGTFMKFEDM 616
Score = 272 bits (589), Expect(2) = 6e-080
Identities = 132/213 (61%), Positives = 143/213 (67%)
Frame = +1 / -2
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLDEVSD+SSNFM PT AAA A +GA T++AVVLLWY LKPI
Sbjct: 642 PPWLDEVSDMSSNFMKVPTCAAAICAYAIGAATEIAVVLLWYT*ESECTNSWSSSALKPI 463
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAM 735
SSCR * VGL VPIIPAC HM*KSKFLG T LSTTVP GT SG KNLV FF A
Sbjct: 462 SSCRTW*CVGLDVPIIPACAHM*KSKFLGWHTCLSTTVPGGTFSGEFVWKNLV*WFF*AT 283
Query: 736 INVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLKMMTWSGFLFPELV*KXXXXXX 915
+ VNLG H SSR+L ASMIC +SMF TW+N L LTPSLKM+TWSGF FPELV*K
Sbjct: 282 MTVNLGSHLSSRHLHASMICSSSMFITWVNWL*LTPSLKMITWSGFRFPELV*KSISDSR 103
Query: 916 XXXXXXXXXGLNNESIISIFGDWVRTDALYFEI 1014
GLNNE+IIS GD V T ALY E+
Sbjct: 102 MRPSSSVPRGLNNEAIISCLGD*VCTVALYLEM 4
Score = 205 bits (443), Expect(3) = 8e-059
Identities = 86/175 (49%), Positives = 119/175 (68%)
Frame = +3 / -1
Query: 489 APLVHVRERVHQLLQVIRIEAYLVMQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNS 668
APLVH+R+RVH+LL+++R EA L+MQ++++ WP NH SM THVE++V M +++
Sbjct: 529 APLVHIRKRVHKLLELVRAEANLIMQNMVMRWPRRANHPSMRTHVEVKVLGMAHLFIHHR 350
Query: 669 ASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTVP 848
NI W EK V++LL N+ CELG+P ++K A L+DLL+LNV HL KL +++P
Sbjct: 349 TRRNIFWRICLEKSGVMVLLSNNDCELGLPLVVKALACLDDLLKLNVYHLGKLALADSIP 170
Query: 849 EDDDLVRLSLP*TGVEVNQTLPNQTIVISFPWLKQRVNHFHFW*LGADRCSVFRD 1013
EDD++V L LP T VEVN+ N+ I+ S PW KQ +H F *L CSVFRD
Sbjct: 169 EDDNVVWLPLPRTSVEVNK*FANEAIIFSSPWFKQ*GHHLLFG*LSVHCCSVFRD 5
Score = 146 bits (313), Expect(2) = 9e-038
Identities = 95/220 (43%), Positives = 112/220 (50%)
Frame = -2 / +3
Query: 1012 SRNTEHLSAPNHQKWK*LTRCLSHGKLMTMV*FGSV*LTSTPVQGRESLTKSSSSGTVLV 833
S NTE +H +* CL+HG+L M F + LTST V G S T SSSG
Sbjct: 6 SLNTEQQCTLSHPNRR*WPHCLNHGELKMMASFANHLLTSTLVLGSGSQTTLSSSGMESA 185
Query: 832 KVSLTRC*TLSCNKSLRLANFLMRNGIPSSH*SLPRRITTLNFSFLESQIMFQLALLLTT 653
K SL R *TLS ++S R A+ L +G PSS L RR T +FS Q MF L
Sbjct: 186 KASLPR**TLSLSRSSRHASALTTSGSPSSQSLLLRRTITPDFSRQIRQKMFLLVRWWIN 365
Query: 652 KSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLTCTKGAQQPYQ 473
K I T STCV ML *L GQ CM R AS + RS CTR L CT+GA++ +Q
Sbjct: 366 KCAIPRTLTSTCVRMLG*LARRGQRITMFCMMRLASARTSSRSLCTRFLMCTRGARRRFQ 545
Query: 472 LLLPSATPTLQPPRLGSS*SSTRCRRLHLAMGGIPRRAAS 353
LL T + S*S CR L AM G RR A+
Sbjct: 546 *LLQ*RTRIWRRRTWAPS*SLRTCRTLRRAMEGATRRWAA 665
Score = 145 bits (312), Expect = 3e-034
Identities = 92/211 (43%), Positives = 105/211 (49%)
Frame = +2 / -3
Query: 380 HG*MKSPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSR 559
HG K PT +T * R+ EQ L CS GT K+ASA P *S S
Sbjct: 638 HGSTKCPTCPQTS*RCPRAPPPYARTLLEQLLKSPSCSSGTHKKASAQTPGARPR*SQSH 459
Query: 560 HAGCDSELAW*SQSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSGQ*S 739
HA + LA QS QH +TCR++SS D L EH+LA KI C SS Q
Sbjct: 458 HAEHGNALASTCQSSQHAHTCRSQSSWDGTLVYPPPYQEEHFLANLSGKIWCDGSSEQQ* 279
Query: 740 M*TWDSISHQEICKPQ*FVATQCSAPG*TDFH*HRP*R**LGQAFSSLNWCRSQSDTPES 919
+*TW Q C P+* QC +PG*T F * P*R** G A +S N CRSQ E
Sbjct: 278 L*TWAPTCRQGTCMPR*SAQAQCLSPG*TGFS*LHP*R**RGLASASQN*CRSQ*VIRE* 99
Query: 920 DHRHQFPVA*TTSQSFPFLVIGCGQMLCISR 1012
H QFPV *T S P V C +LCI R
Sbjct: 98 GHHLQFPVV*TMRPSSPVWVTECALLLCI*R 6
Score = 90.4 bits (191), Expect(3) = 1e-025
Identities = 50/110 (45%), Positives = 66/110 (60%)
Frame = -3 / +1
Query: 1014 YLEIQSICPHPITKNGND*LVV*ATGN**RWSDSGVSD*LLHQFREEKA*PSHHLQGRC* 835
+L IQS H +T+ G+D L+V* TGN* W S ++ *LLH F E +A P +HLQG
Sbjct: 4 HL*IQSNSAHSVTQTGDDGLIV*TTGN*R*WPHSRITY*LLH*FWEAEARPRYHLQGWSQ 183
Query: 834 *KSV*PGAEH*VATNH*GLQIS**EMESQVHIDHCPEESPH*IFHSWKAR 685
K V PG +H* +H G+Q+ * ++ +QVH C EE H IF AR
Sbjct: 184 LKPVYPGDKH*A*ADHRGMQVP*RQVGAQVHSHCCSEEPSHQIFPDKFAR 333
Score = 46.0 bits (94), Expect(2) = 6e-080
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 295 QQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
QQKNM+L+TFSC SS T LP +V PP
Sbjct: 726 QQKNMKLITFSCSEASSGTEALPTDVWPP 640
Score = 40.0 bits (81), Expect(3) = 1e-025
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -3 / +1
Query: 639 KELRFLHVFTCWNDWDYQANSLSHPA*RDRLQ 544
+EL LHV CW+DW +AN+L A* D LQ
Sbjct: 379 QEL*LLHVCACWDDWHVEANALPCSA**DWLQ 474
Score = 32.2 bits (64), Expect(3) = 8e-059
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3 / -1
Query: 297 AEEHGAPHFLMQTGQLLDRDAARRGMPP 380
AEEH A HF MQ G L AA R + P
Sbjct: 724 AEEHEAHHFFMQRGXLRH*GAAHRRVAP 641
Score = 31.8 bits (63), Expect(2) = e-115
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1 / +2
Query: 350 VQELPRLHEKVRSSMFFC 297
V EL LHEKV S MFFC
Sbjct: 671 VPELASLHEKVMSFMFFC 724
Score = 31.3 bits (62), Expect(2) = 9e-038
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / +3
Query: 379 GGIPRRAASLSRSCPVCMRK*GAPCSSA 296
G R AA RS P CM+K* A CSSA
Sbjct: 642 GATRRWAAPQCRSXPRCMKK**ASCSSA 725
Score = 28.6 bits (56), Expect(3) = 8e-059
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3 / -1
Query: 357 AARRGMPPMAR*SLRHLVELYE 422
A RR P MAR S+RH+++L+E
Sbjct: 661 AHRRVAPSMARRSVRHVLKLHE 596
Score = 24.0 bits (46), Expect(3) = 1e-025
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3 / +1
Query: 501 VPKEHNSHISCCSHLLR 451
VP+EH+ S CS+ +R
Sbjct: 517 VPEEHDGDFSSCSNSVR 567
>gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42F08
5-PRIME, mRNA sequence
Length = 520
Score = 369 bits (801), Expect = e-101
Identities = 142/159 (89%), Positives = 153/159 (96%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIF 849
REWPL+SKYRASVR+QSPK+EMIDSLFKP+ T+DDGL+RECLIDFYTSSGKRKPDQ+IIF
Sbjct: 43 REWPLVSKYRASVRSQSPKLEMIDSLFKPQGTEDDGLVRECLIDFYTSSGKRKPDQIIIF 222
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAG 669
RDGVSESQFNQVLNIEL QIIEACKFLDE WNPKFTLI+AQKNHHTKFF+PG PDNVP G
Sbjct: 223 RDGVSESQFNQVLNIELDQIIEACKFLDENWNPKFTLIVAQKNHHTKFFMPGSPDNVPPG 402
Query: 668 TVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEI 552
TVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI
Sbjct: 403 TVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEI 519
Score = 250 bits (541), Expect = 8e-066
Identities = 123/170 (72%), Positives = 128/170 (75%)
Frame = +1 / -3
Query: 553 ISSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWA 732
ISSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMKN VW*FF A
Sbjct: 518 ISSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMKNFVW*FF*A 339
Query: 733 MINVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLKMMTWSGFLFPELV*KXXXXX 912
I+VNLGF FSS+NLQAS+I NSMFST LN LSLTPSLKMM SGFLFPELV*K
Sbjct: 338 TISVNLGFQFSSKNLQASII*SNSMFST*LNWLSLTPSLKMMI*SGFLFPELV*KSMRHS 159
Query: 913 XXXXXXXXXXGLNNESIISIFGDWVRTDALYFEIRGHSRELTTAATDXTS 1062
GLNNESIIS FGD RT+ALYFE RGHSRE TTAA D S
Sbjct: 158 RTRPSSSVPCGLNNESIISSFGDCERTEALYFETRGHSREPTTAAMDGIS 9
Score = 232 bits (502), Expect = 2e-060
Identities = 93/170 (54%), Positives = 124/170 (72%)
Frame = +3 / -2
Query: 552 YLVMQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLG 731
YL+MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+EK VVILL
Sbjct: 519 YLIMQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHEKLCVVILLS 340
Query: 732 NDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTVPEDDDLVRLSLP*TGVEVNQTL 911
N+QCELG+P I++ A LN+L+ +VQHL+KL NT+PEDDDL+ SL TGVEVN+TL
Sbjct: 339 NNQCELGVPIFIQELAGLNNLI*FDVQHLIKLALANTIPEDDDLIWFSLSRTGVEVNETL 160
Query: 912 PNQTIVISFPWLKQRVNHFHFW*LGADRCSVFRDKRPFTRTNHSSNRXYL 1061
PN+ I+ S WL+Q + HF W*L A +FRDK PF+RTN+ N Y+
Sbjct: 159 PNKAIIFSSLWLEQ*IYHF*LW*LRAH*SPIFRDKGPFSRTNNCCNGWYI 10
Score = 149 bits (320), Expect = 3e-035
Identities = 82/161 (50%), Positives = 91/161 (56%)
Frame = +2 / -1
Query: 551 LSRHAGCDSELAW*SQSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSG 730
+S HAG + LA SQSFQH TC++ +SLD R H Q *K CGDSS
Sbjct: 520 VSHHAGYGNVLALLSQSFQHERTCKSHNSLDGRQHYQQQCQEGHCQEIQA*KTLCGDSSE 341
Query: 731 Q*SM*TWDSISHQEICKPQ*FVATQCSAPG*TDFH*HRP*R**LGQAFSSLNWCRSQSDT 910
Q S+*TW S H C+PQ*F +CSAP *T *H P*R** FS NWCRSQ DT
Sbjct: 340 QQSV*TWGSNFHPRTCRPQ*FDLIRCSAPD*TGSR*HHP*R**SDLVFSFQNWCRSQ*DT 161
Query: 911 PESDHRHQFPVA*TTSQSFPFLVIGCGQMLCISR*EAIHEN 1033
PE H QF VA*T + SF LV ISR AI EN
Sbjct: 160 PEQGHHLQFLVA*TMNLSFLALVTASALKPYISRQGAILEN 38
Score = 143 bits (306), Expect = 2e-033
Identities = 82/153 (53%), Positives = 92/153 (60%)
Frame = -2 / +2
Query: 1012 SRNTEHLSAPNHQKWK*LTRCLSHGKLMTMV*FGSV*LTSTPVQGRESLTKSSSSGTVLV 833
SRN A +HQ K* C SH +L M FGSV LTSTPV RE+ +SSSSG VL
Sbjct: 59 SRNIGLQCARSHQS*K**IHCSSHKELKMMALFGSVSLTSTPVLERENQIRSSSSGMVLA 238
Query: 832 KVSLTRC*TLSCNKSLRLANFLMRNGIPSSH*SLPRRITTLNFSFLESQIMFQLALLLTT 653
+ SL RC*T + K LR A+ M+ G PSSH* L RRITT +FS L+ M LALLL
Sbjct: 239 RASLIRC*TSN*IKLLRPASSWMKIGTPSSH*LLLRRITTQSFSCLDLLTMSLLALLLIM 418
Query: 652 KSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR 554
S IQG TC MLE*LG GQ SCM R
Sbjct: 419 LSAIQGIMTFTCALMLE*LGQQGQHITISCMMR 517
Score = 124 bits (266), Expect(2) = 8e-037
Identities = 62/113 (54%), Positives = 74/113 (65%)
Frame = -3 / +3
Query: 1032 FS*MASYLEIQSICPHPITKNGND*LVV*ATGN**RWSDSGVSD*LLHQFREEKA*PSHH 853
FS MA LEI +TK ND +V AT N* W SGVS *LLHQF +EK HH
Sbjct: 39 FSRMAPCLEI*GFSALAVTKARNDRFIVQATRN*R*WPCSGVSH*LLHQFWKEKTRSDHH 218
Query: 852 LQGRC**KSV*PGAEH*VATNH*GLQIS**EMESQVHIDHCPEESPH*IFHSW 694
LQG C* + V* GAEH + +N+*GLQ+ *++E QVH D C EESPH +FH+W
Sbjct: 219 LQGWC*REPV*SGAEHRIRSNY*GLQVLG*KLEPQVHTDCCSEESPHKVFHAW 377
Score = 49.6 bits (102), Expect(2) = 8e-037
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -3 / +3
Query: 639 KELRFLHVFTCWNDWDYQANSLSHPA*RD 553
KEL LHV +CWNDWD +AN+L +PA* D
Sbjct: 432 KEL*LLHVRSCWNDWDNKANTLPYPA**D 518
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 311 bits (674), Expect(2) = 2e-091
Identities = 120/151 (79%), Positives = 137/151 (90%)
Frame = -1 / +1
Query: 854 IFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVP 675
IFRDGVSESQF QV+NIEL+QIIEACK LD+KW PKFT+I+AQKNHHT+FF P+NVP
Sbjct: 1 IFRDGVSESQFTQVINIELEQIIEACKCLDDKWEPKFTVIVAQKNHHTRFFQTNSPENVP 180
Query: 674 AGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQ 495
GTVVD +VCHP+NFDFYMC+HAGMIGT+RPTHYH+LHDEIGF+ D+LQE VHSLSYVYQ
Sbjct: 181 PGTVVDKQVCHPKNFDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQ 360
Query: 494 RSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
RSTTAISV API YAHLAAAQVG F+KF++M
Sbjct: 361 RSTTAISVAAPIAYAHLAAAQVGTFMKFEDM 453
Score = 221 bits (477), Expect(2) = 1e-067
Identities = 105/159 (66%), Positives = 113/159 (71%)
Frame = +1 / -3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLDEVSD+SSNFM PT AAAR A +GA T++AVVLLWY LKPI
Sbjct: 479 PPWLDEVSDMSSNFMKVPTCAAARCAYAIGAATEIAVVLLWYT*ESEWTNSWSSSALKPI 300
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAM 735
SSCR * VGL VPIIPAC HM*KSKFLG T LSTTVP GT SG KNLV FF A
Sbjct: 299 SSCRTW*CVGLDVPIIPACAHM*KSKFLGWHTCLSTTVPGGTFSGEFVWKNLV*WFF*AT 120
Query: 736 INVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLK 852
+ VNLG H SSR+L ASMIC +SMF TW+N LSLTPSLK
Sbjct: 119 MTVNLGSHLSSRHLHASMICSSSMFITWVNWLSLTPSLK 3
Score = 163 bits (351), Expect(2) = 2e-047
Identities = 73/166 (43%), Positives = 111/166 (66%)
Frame = +3 / -2
Query: 357 AARRGMPPMAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQV 536
A RR P +AR S+RH+++L+E +L ++ V S+ * APLVH+R+RV +LL++
Sbjct: 498 AHRRVAPSLARRSVRHVLKLHEGAHLRRRQMRVRYWSSY*NRRRAPLVHIRKRVDKLLEL 319
Query: 537 IRIEAYLVMQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSV 716
+R EA L+MQ++++ WP NH SM THVE++V M +++ NI W EK V
Sbjct: 318 VRAEANLIMQNMVMRWPRRANHPSMRTHVEVKVLGMAHLFIHHRTRRNIFWRICLEKSGV 139
Query: 717 VILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTVPED 854
++LL N+ CELG+P ++K A L+DLL+L+V HL KL F +++PED
Sbjct: 138 MVLLSNNDCELGLPLVVKALACLDDLLKLDVYHLGKLAFADSIPED 1
Score = 102 bits (217), Expect(2) = 1e-028
Identities = 70/167 (41%), Positives = 83/167 (49%)
Frame = -2 / +2
Query: 853 SSGTVLVKVSLTRC*TLSCNKSLRLANFLMRNGIPSSH*SLPRRITTLNFSFLESQIMFQ 674
SSG K SL R *T S ++S R A+ L +G PSS L RR T +FS Q MF
Sbjct: 2 SSGMESAKASLPR**TSSLSRSSRHASALTTSGSPSSQSLLLRRTITPDFSRQIRQKMFL 181
Query: 673 LALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLTCTK 494
L K I T STCV ML *L GQ CM R AS + RS TR L CT+
Sbjct: 182 LVRWWINKCAIPRTLTSTCVRMLG*LARRGQRITMFCMMRLASARTSSRSLSTRFLMCTR 361
Query: 493 GAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRRLHLAMGGIPRRAAS 353
GA++ +Q LL T + + S*S CR L A G RR A+
Sbjct: 362 GARRRFQ*LLQ*RTRIWRRRKWAPS*SLRTCRTLRRAREGATRRWAA 502
Score = 99.1 bits (210), Expect(2) = 3e-021
Identities = 63/157 (40%), Positives = 75/157 (47%)
Frame = +2 / -1
Query: 383 G*MKSPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRH 562
G K PT +T * R+ EQ L CS GT K+AS P *S S H
Sbjct: 472 GSTKCPTCPQTS*RCPLAPPPDARTLLEQLLKSPSCSSGTHKKASGQTPGARPR*SQSHH 293
Query: 563 AGCDSELAW*SQSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSGQ*SM 742
A + LA QS QH +TCR++SS D L EH+LA KI C SS Q +
Sbjct: 292 AEHGNALASTCQSSQHAHTCRSQSSWDGTLVYPPPYQEEHFLANLSGKIWCDGSSEQQ*L 113
Query: 743 *TWDSISHQEICKPQ*FVATQCSAPG*TDFH*HRP*R 853
*TW Q C P+* +C +PG*T F * P*R
Sbjct: 112 *TWAPTCRQGTCMPR*SAQARCLSPG*TGFR*LHP*R 2
Score = 56.1 bits (116), Expect(2) = 1e-067
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +1 / -3
Query: 277 DTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
DT A QQKNMEL TFSC RGSS T LP +V PP
Sbjct: 581 DTSRAHQQKNMELFTFSCSRGSSGTEALPTDVWPP 477
Score = 46.0 bits (94), Expect(2) = 2e-047
Identities = 21/34 (61%), Positives = 22/34 (64%)
Frame = +3 / -2
Query: 279 HIPCCSAEEHGAPHFLMQTGQLLDRDAARRGMPP 380
H P SAEEHGA HFLMQ QL R AA R + P
Sbjct: 579 HKPSPSAEEHGALHFLMQPRQLRHRGAAHRRVAP 478
Score = 45.5 bits (93), Expect(2) = 2e-091
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / +2
Query: 379 GGIPRRAASLSRSCPVCMRK*GAPCSSAEQQGMCPL 272
G R AA RSC CMRK* APCSSA+ G+C L
Sbjct: 479 GATRRWAAPRCRSCLGCMRK*RAPCSSADGLGLCRL 586
Score = 44.6 bits (91), Expect(2) = 1e-028
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / +1
Query: 350 VQELPRLHEKVRSSMFFC*AAGNVS 276
V ELPRLHEKV+SSMFFC* A VS
Sbjct: 508 VPELPRLHEKVKSSMFFC*WARLVS 582
Score = 23.1 bits (44), Expect(2) = 3e-021
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2 / -1
Query: 338 AAPGQGRCPPRYAP 379
AAP RCPP P
Sbjct: 520 AAPAPRRCPPTCGP 479
>gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB12C12
5-PRIME, mRNA sequence
Length = 471
Score = 327 bits (708), Expect = 8e-089
Identities = 128/155 (82%), Positives = 142/155 (91%)
Frame = -1 / +2
Query: 935 TDDDGLIRECLIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKW 756
T DDGLIRE LIDFYTSSGKRKPDQVIIFRDGVSESQF QV+NIEL+QIIEACK LD+KW
Sbjct: 5 TRDDGLIRESLIDFYTSSGKRKPDQVIIFRDGVSESQFTQVINIELEQIIEACKCLDDKW 184
Query: 755 NPKFTLIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTH 576
PKFT+I+AQKNHHT+FF P+NVP GTVVD +VCHP+NFDFYMC+HAGMIGT+RPTH
Sbjct: 185 EPKFTVIVAQKNHHTRFFQTNSPENVPPGTVVDKQVCHPKNFDFYMCAHAGMIGTSRPTH 364
Query: 575 YHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISV 471
YH+LHDEIGF+ D+LQE VHSLSYVYQRSTTAISV
Sbjct: 365 YHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISV 469
Score = 200 bits (431), Expect = 1e-050
Identities = 95/142 (66%), Positives = 102/142 (71%)
Frame = +1 / -1
Query: 472 TDMAVVLLWYXXXXXXXXXXXXXGLKPISSCRM***VGLVVPIIPACEHM*KSKFLG*QT 651
T++AVVLLWY LKPISSCR * VGL VPIIPAC HM*KSKFLG T
Sbjct: 468 TEIAVVLLWYT*ESEWTNSWSSSALKPISSCRTW*CVGLDVPIIPACAHM*KSKFLGWHT 289
Query: 652 LLSTTVPAGTLSGFPGMKNLVW*FFWAMINVNLGFHFSSRNLQASMICCNSMFSTWLN*L 831
LSTTVP GT SG KNLV FF A + VNLG H SSR+L ASMIC +SMF TW+N L
Sbjct: 288 CLSTTVPGGTFSGEFVWKNLV*WFF*ATMTVNLGSHLSSRHLHASMICSSSMFITWVNWL 109
Query: 832 SLTPSLKMMTWSGFLFPELV*K 897
SLTPSLKM+TWSGF FPELV*K
Sbjct: 108 SLTPSLKMITWSGFRFPELV*K 43
Score = 173 bits (372), Expect = 2e-042
Identities = 72/147 (48%), Positives = 103/147 (70%)
Frame = +3 / -3
Query: 489 APLVHVRERVHQLLQVIRIEAYLVMQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNS 668
APLVH+R+RV +LL+++R EA L+MQ++++ WP NH SM THVE++V M +++
Sbjct: 451 APLVHIRKRVDKLLELVRAEANLIMQNMVMRWPRRANHPSMRTHVEVKVLGMAHLFIHHR 272
Query: 669 ASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTVP 848
NI W EK V++LL N+ CELG+P ++K A L+DLL+L+V HL KL F +++P
Sbjct: 271 TRRNIFWRICLEKSGVMVLLSNNDCELGLPLVVKALACLDDLLKLDVYHLGKLAFADSIP 92
Query: 849 EDDDLVRLSLP*TGVEVNQTLPNQTIV 929
EDD+LV L LP T VEVN+ PN I+
Sbjct: 91 EDDNLVWLPLPRTSVEVNK*FPN*AII 11
Score = 113 bits (242), Expect = 1e-024
Identities = 66/146 (45%), Positives = 77/146 (52%)
Frame = +2 / -2
Query: 488 CSFGTRKRASAPAPAGHQD*SLSRHAGCDSELAW*SQSFQHVNTCRNRSSLDDRLXXXXX 667
CS GT K+AS P *S S HA + LA QS QH +TCR++SS D L
Sbjct: 452 CSSGTHKKASGQTPGARPR*SQSHHAEHGNALASTCQSSQHAHTCRSQSSWDGTLVYPPP 273
Query: 668 XXLEHYLAFQE*KI*CGDSSGQ*SM*TWDSISHQEICKPQ*FVATQCSAPG*TDFH*HRP 847
EH+LA KI C SS Q +*TW Q C P+* +C +PG*T F * P
Sbjct: 272 YQEEHFLANLSGKIWCDGSSEQQ*L*TWAPTCRQGTCMPR*SAQARCLSPG*TGFR*LHP 93
Query: 848 *R**LGQAFSSLNWCRSQSDTPESDH 925
*R** G A +S N CRSQ PE H
Sbjct: 92 *R**PGLASASQN*CRSQ*VIPELGH 15
Score = 107 bits (229), Expect = 9e-023
Identities = 69/151 (45%), Positives = 81/151 (53%)
Frame = -2 / +3
Query: 925 MV*FGSV*LTSTPVQGRESLTKSSSSGTVLVKVSLTRC*TLSCNKSLRLANFLMRNGIPS 746
M *FG+ LTST V G S T+ SSSG K SL R *T S ++S R A+ L +G PS
Sbjct: 15 MA*FGNHLLTSTLVLGSGSQTRLSSSGMESAKASLPR**TSSLSRSSRHASALTTSGSPS 194
Query: 745 SH*SLPRRITTLNFSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITS 566
S L RR T +FS Q MF L K I T STCV ML *L GQ
Sbjct: 195 SQSLLLRRTITPDFSRQIRQKMFLLVRWWINKCAIPRTLTSTCVRMLG*LARRGQRITMF 374
Query: 565 CMTR*ASILMTCRSWCTRSLTCTKGAQQPYQ 473
CM R AS + RS TR L CT+GA++ +Q
Sbjct: 375 CMMRLASARTSSRSLSTRFLMCTRGARRRFQ 467
>gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF13F11
5-PRIME, mRNA sequence
Length = 664
Score = 303 bits (655), Expect = 2e-081
Identities = 119/146 (81%), Positives = 132/146 (90%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIF 849
REWPLISKYRA+V TQSPK EM+ SLFKPR T+DDGLIRE LIDFYTSSGKRKPDQVIIF
Sbjct: 226 REWPLISKYRATVHTQSPKQEMMASLFKPRGTEDDGLIRESLIDFYTSSGKRKPDQVIIF 405
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAG 669
RDGVSESQF QV+NIEL+QIIEACK LD+KW PKFT+I+AQKNHHT+FF P+NVP G
Sbjct: 406 RDGVSESQFTQVINIELEQIIEACKCLDDKWEPKFTVIVAQKNHHTRFFQTNSPENVPPG 585
Query: 668 TVVDNKVCHPRNFDFYMCSHAGMIGT 591
TVVD +VCHP+NFDFYMC+HAGMIGT
Sbjct: 586 TVVDKQVCHPKNFDFYMCAHAGMIGT 663
Score = 217 bits (469), Expect = 7e-056
Identities = 103/157 (65%), Positives = 111/157 (70%)
Frame = +1 / -3
Query: 592 VPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAMINVNLGFHFSSR 771
VPIIPAC HM*KSKFLG T LSTTVP GT SG KNLV FF A + VNLG H SSR
Sbjct: 662 VPIIPACAHM*KSKFLGWHTCLSTTVPGGTFSGEFVWKNLV*WFF*ATMTVNLGSHLSSR 483
Query: 772 NLQASMICCNSMFSTWLN*LSLTPSLKMMTWSGFLFPELV*KXXXXXXXXXXXXXXXGLN 951
+L ASMIC +SMF TW+N LSLTPSLKM+TWSGF FPELV*K GLN
Sbjct: 482 HLHASMICSSSMFITWVNWLSLTPSLKMITWSGFRFPELV*KSISDSRMRPSSSVPRGLN 303
Query: 952 NESIISIFGDWVRTDALYFEIRGHSRELTTAATDXTS 1062
NE+IIS GD V T ALY E+RGHSRELTTAA + S
Sbjct: 302 NEAIISCLGD*VCTVALYLEMRGHSRELTTAAMEGLS 192
Score = 179 bits (386), Expect = 2e-044
Identities = 77/151 (50%), Positives = 101/151 (66%)
Frame = +3 / -2
Query: 597 NHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKF 776
NH SM THVE++V M +++ NI W EK V++LL N+ CELG+P ++K
Sbjct: 657 NHPSMRTHVEVKVLGMAHLFIHHRTRRNIFWRICLEKSGVMVLLSNNDCELGLPLVVKAL 478
Query: 777 ASLNDLLQLNVQHLVKLTFTNTVPEDDDLVRLSLP*TGVEVNQTLPNQTIVISFPWLKQR 956
A L+DLL+L+V HL KL F +++PEDD+LV L LP T VEVN+ PN+ I+ S PW KQ
Sbjct: 477 ACLDDLLKLDVYHLGKLAFADSIPEDDNLVWLPLPRTSVEVNK*FPNEAIIFSSPWFKQ* 298
Query: 957 VNHFHFW*LGADRCSVFRDKRPFTRTNHSSN 1049
+H F *L CSVFRD+RP TRT+H SN
Sbjct: 297 GHHLLFG*LSVHCCSVFRDERPLTRTHHRSN 205
Score = 132 bits (283), Expect = 3e-030
Identities = 74/151 (49%), Positives = 84/151 (55%)
Frame = +2 / -1
Query: 596 QSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSGQ*SM*TWDSISHQEI 775
QS QH +TCR++SS D L EH+LA KI C SS Q +*TW Q
Sbjct: 658 QSSQHAHTCRSQSSWDGTLVYPPPYQEEHFLANLSGKIWCDGSSEQQ*L*TWAPTCRQGT 479
Query: 776 CKPQ*FVATQCSAPG*TDFH*HRP*R**LGQAFSSLNWCRSQSDTPESDHRHQFPVA*TT 955
C P+* +C +PG*T F * P*R** G A +S N CRSQ PE H QFPV *T
Sbjct: 478 CMPR*SAQARCLSPG*TGFR*LHP*R**PGLASASQN*CRSQ*VIPE*GHHLQFPVV*TM 299
Query: 956 SQSFPFLVIGCGQMLCISR*EAIHEN*PQQQ 1048
S P V C +LCI R*EA HEN P QQ
Sbjct: 298 RPSSPVWVTECALLLCI*R*EATHENSPPQQ 206
Score = 109 bits (232), Expect(2) = 4e-026
Identities = 58/121 (47%), Positives = 75/121 (61%)
Frame = -3 / +3
Query: 1047 CCCG*FS*MASYLEIQSICPHPITKNGND*LVV*ATGN**RWSDSGVSD*LLHQFREEKA 868
CC G FS*+AS+L IQS H +T+ G+D L+V* TGN* W SG++ *LLH F E +A
Sbjct: 207 CCGGEFS*VASHL*IQSNSAHSVTQTGDDGLIV*TTGN*R*WPHSGITY*LLH*FWEAEA 386
Query: 867 *PSHHLQGRC**KSV*PGAEH*VATNH*GLQIS**EMESQVHIDHCPEESPH*IFHSWKA 688
P +HLQG K V PG +H +H G+Q+ * ++ +QVH C EE H IF A
Sbjct: 387 RPGYHLQGWSQRKPVYPGDKHRA*ADHRGMQVP*RQVGAQVHSHCCSEEPSHQIFPDKFA 566
Query: 687 R 685
R
Sbjct: 567 R 569
Score = 29.5 bits (58), Expect(2) = 4e-026
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 639 KELRFLHVFTCWNDW 595
+EL LHV CW+DW
Sbjct: 615 QEL*LLHVCACWDDW 659
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 295 bits (639), Expect = 2e-079
Identities = 113/144 (78%), Positives = 130/144 (90%)
Frame = -1 / +1
Query: 833 ESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAGTVVDN 654
ESQF QV+NIEL+QIIEACK LD+KW PKFT+I+AQKNHHT+FF P+NVP GTVVD
Sbjct: 13 ESQFTQVINIELEQIIEACKCLDDKWEPKFTVIVAQKNHHTRFFQTNSPENVPPGTVVDK 192
Query: 653 KVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAIS 474
+VCHP+NFDFYMC+HAGMIGT+RPTHYH+LHDEIGF+ D+LQE VHSLSYVYQRSTTAIS
Sbjct: 193 QVCHPKNFDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAIS 372
Query: 473 VVAPICYAHLAAAQVGQFIKFDEM 402
V API YAHLAAAQVG F+KF++M
Sbjct: 373 VAAPIAYAHLAAAQVGTFMKFEDM 444
Score = 196 bits (423), Expect = 2e-049
Identities = 96/150 (64%), Positives = 104/150 (69%)
Frame = +1 / -1
Query: 385 LDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPISSC 564
LDEVSD+SSNFM PT AAAR A +GA T++AVVLLWY LKPISSC
Sbjct: 461 LDEVSDMSSNFMKVPTCAAARCAYAIGAATEIAVVLLWYT*ESEWTNSWSSSALKPISSC 282
Query: 565 RM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAMINV 744
R * VGL VPIIPAC HM*KSKFLG T LSTTVP GT SG KNLV FF A + V
Sbjct: 281 RTW*CVGLDVPIIPACAHM*KSKFLGWHTCLSTTVPGGTFSGEFVWKNLV*WFF*ATMTV 102
Query: 745 NLGFHFSSRNLQASMICCNSMFSTWLN*LS 834
NLG H SSR+L ASMIC +SMF TW+N LS
Sbjct: 101 NLGSHLSSRHLHASMICSSSMFITWVNWLS 12
Score = 144 bits (308), Expect = 1e-033
Identities = 65/149 (43%), Positives = 99/149 (66%)
Frame = +3 / -3
Query: 387 R*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLVMQ 566
R S+RH+++L+E +L ++ V S+ * APLVH+R+RV +LL+++R EA L+MQ
Sbjct: 459 RRSVRHVLKLHEGAHLRRRQMRVRYWSSY*NRRRAPLVHIRKRVDKLLELVRAEANLIMQ 280
Query: 567 DVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLGNDQCE 746
++++ WP NH SM THVE++V M +++ NI W EK V++LL N+ CE
Sbjct: 279 NMVMRWPRRANHPSMRTHVEVKVLGMAHLFIHHRTRRNIFWRICLEKSGVMVLLSNNDCE 100
Query: 747 LGIPFLIKKFASLNDLLQLNVQHLVKLTF 833
LG+P ++K A L+DLL+L+V HL KL F
Sbjct: 99 LGLPLVVKALACLDDLLKLDVYHLGKLAF 13
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 267 bits (578), Expect(2) = 1e-078
Identities = 101/129 (78%), Positives = 116/129 (89%)
Frame = -1 / +2
Query: 788 IEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSH 609
IEACK LD+KW PKFT+I+AQKNHHT+FF P+NVP GTVVD +VCHP+NFDFYMC+H
Sbjct: 11 IEACKCLDDKWEPKFTVIVAQKNHHTRFFQTNSPENVPPGTVVDKQVCHPKNFDFYMCAH 190
Query: 608 AGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQV 429
AGMIGT+RPTHYH+LHDEIGF+ D+LQE VHSLSYVYQRSTTAISV API YAHLAAAQV
Sbjct: 191 AGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAYAHLAAAQV 370
Query: 428 GQFIKFDEM 402
G F+KF++M
Sbjct: 371 GTFMKFEDM 397
Score = 182 bits (393), Expect(2) = 6e-056
Identities = 88/139 (63%), Positives = 96/139 (69%)
Frame = +1 / -3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLDEVSD+SSNFM PT AAAR A +GA T++AVVLLWY LKPI
Sbjct: 423 PPWLDEVSDMSSNFMKVPTCAAARCAYAIGAATEIAVVLLWYT*ESEWTNSWSSSALKPI 244
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAM 735
SSCR * VGL VPIIPAC HM*KSKFLG T LSTTVP GT SG KNLV FF A
Sbjct: 243 SSCRTW*CVGLDVPIIPACAHM*KSKFLGWHTCLSTTVPGGTFSGEFVWKNLV*WFF*AT 64
Query: 736 INVNLGFHFSSRNLQASMI 792
+ VNLG H SSR+L AS++
Sbjct: 63 MTVNLGSHLSSRHLHASIL 7
Score = 131 bits (281), Expect(2) = 2e-038
Identities = 60/144 (41%), Positives = 93/144 (64%)
Frame = +3 / -2
Query: 357 AARRGMPPMAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQV 536
A RR P +AR S+RH+++L+E +L ++ V S+ * APLVH+R+RV +LL++
Sbjct: 442 AHRRVAPSLARRSVRHVLKLHEGAHLRRRQMRVRYWSSY*NRRRAPLVHIRKRVDKLLEL 263
Query: 537 IRIEAYLVMQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSV 716
+R EA L+MQ++++ WP NH SM THVE++V M +++ NI W EK V
Sbjct: 262 VRAEANLIMQNMVMRWPRRANHPSMRTHVEVKVLGMAHLFIHHRTRRNIFWRICLEKSGV 83
Query: 717 VILLGNDQCELGIPFLIKKFASLN 788
++LL N+ CELG+P ++K A L+
Sbjct: 82 MVLLSNNDCELGLPLVVKALACLD 11
Score = 88.1 bits (186), Expect(2) = 2e-024
Identities = 60/144 (41%), Positives = 70/144 (48%)
Frame = -2 / +3
Query: 784 RLANFLMRNGIPSSH*SLPRRITTLNFSFLESQIMFQLALLLTTKSVIQGTSISTCVHML 605
R A+ L +G PSS L RR T +FS Q MF L K I T STCV ML
Sbjct: 15 RHASALTTSGSPSSQSLLLRRTITPDFSRQIRQKMFLLVRWWINKCAIPRTLTSTCVRML 194
Query: 604 E*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLG 425
*L GQ CM R AS + RS TR L CT+GA++ +Q LL T + R
Sbjct: 195 G*LARRGQRITMFCMMRLASARTSSRSLSTRFLMCTRGARRRFQ*LLQ*RTRIWRRRRWA 374
Query: 424 SS*SSTRCRRLHLAMGGIPRRAAS 353
S*S CR L A G RR A+
Sbjct: 375 PS*SLRTCRTLRRAREGATRRWAA 446
Score = 55.6 bits (115), Expect(2) = 6e-056
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +1 / -3
Query: 277 DTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
D A QQKNMELLTFSC RGSS T LP +V PP
Sbjct: 525 DNSRAHQQKNMELLTFSCSRGSSGTEALPTDVWPP 421
Score = 48.3 bits (99), Expect(2) = 2e-038
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = +3 / -2
Query: 285 PCCSAEEHGAPHFLMQTGQLLDRDAARRGMPP 380
P SAEEHGAPHFLMQ QL R AA R + P
Sbjct: 517 PSPSAEEHGAPHFLMQPRQLRHRGAAHRRVAP 422
Score = 46.9 bits (96), Expect(2) = 1e-078
Identities = 21/34 (61%), Positives = 22/34 (64%)
Frame = -2 / +3
Query: 379 GGIPRRAASLSRSCPVCMRK*GAPCSSAEQQGMC 278
G R AA RSC CMRK*GAPCSSA+ G C
Sbjct: 423 GATRRWAAPRCRSCLGCMRK*GAPCSSADGLGCC 524
Score = 44.6 bits (91), Expect(2) = 2e-024
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -1 / +2
Query: 350 VQELPRLHEKVRSSMFFC*AA 288
V ELPRLHEKVRSSMFFC* A
Sbjct: 452 VPELPRLHEKVRSSMFFC*WA 514
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 293 bits (634), Expect = 1e-078
Identities = 112/143 (78%), Positives = 129/143 (90%)
Frame = -1 / +1
Query: 830 SQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAGTVVDNK 651
SQF QV+NIEL+QIIEACK LD+KW PKFT+I+AQKNHHT+FF P+NVP GTVVD +
Sbjct: 1 SQFTQVINIELEQIIEACKCLDDKWEPKFTVIVAQKNHHTRFFQTNSPENVPPGTVVDKQ 180
Query: 650 VCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISV 471
VCHP+NFDFYMC+HAGMIGT+RPTHYH+LHDEIGF+ D+LQE VHSLSYVYQRSTTAISV
Sbjct: 181 VCHPKNFDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADELQEFVHSLSYVYQRSTTAISV 360
Query: 470 VAPICYAHLAAAQVGQFIKFDEM 402
API YAHLAAAQVG F+KF++M
Sbjct: 361 AAPIAYAHLAAAQVGTFMKFEDM 429
Score = 206 bits (444), Expect = 2e-052
Identities = 97/150 (64%), Positives = 105/150 (70%)
Frame = +1 / -3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLDEVSD+SSNFM PT AAAR A +GA T++AVVLLWY LKPI
Sbjct: 455 PPWLDEVSDMSSNFMKVPTCAAARCAYAIGAATEIAVVLLWYT*ESEWTNSWSSSALKPI 276
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAM 735
SSCR * VGL VPIIPAC HM*KSKFLG T LSTTVP GT SG KNLV FF A
Sbjct: 275 SSCRTW*CVGLDVPIIPACAHM*KSKFLGWHTCLSTTVPGGTFSGEFVWKNLV*WFF*AT 96
Query: 736 INVNLGFHFSSRNLQASMICCNSMFSTWLN 825
+ VNLG H SSR+L ASMIC +SMF TW+N
Sbjct: 95 MTVNLGSHLSSRHLHASMICSSSMFITWVN 6
Score = 150 bits (322), Expect = 1e-035
Identities = 69/157 (43%), Positives = 104/157 (66%)
Frame = +3 / -2
Query: 357 AARRGMPPMAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQV 536
A RR P +AR S+RH+++L+E +L ++ V S+ * APLVH+R+RV +LL++
Sbjct: 474 AHRRVAPSLARRSVRHVLKLHEGAHLRRRQMRVRYWSSY*NRRRAPLVHIRKRVDKLLEL 295
Query: 537 IRIEAYLVMQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSV 716
+R EA L+MQ++++ WP NH SM THVE++V M +++ NI W EK V
Sbjct: 294 VRAEANLIMQNMVMRWPRRANHPSMRTHVEVKVLGMAHLFIHHRTRRNIFWRICLEKSGV 115
Query: 717 VILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKL 827
++LL N+ CELG+P ++K A L+DLL+L+V HL KL
Sbjct: 114 MVLLSNNDCELGLPLVVKALACLDDLLKLDVYHLGKL 4
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 258 bits (558), Expect(2) = 2e-077
Identities = 101/114 (88%), Positives = 107/114 (93%)
Frame = -1 / +1
Query: 743 TLIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHIL 564
TLI+AQKNHHTKFF+PG PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHIL
Sbjct: 40 TLIVAQKNHHTKFFMPGSPDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHIL 219
Query: 563 HDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
HDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 220 HDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 381
Score = 182 bits (392), Expect(2) = 9e-054
Identities = 72/127 (56%), Positives = 96/127 (75%)
Frame = +3 / -3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 402 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 223
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLGNDQ 740
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+EK VVILL N+Q
Sbjct: 222 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHEKLCVVILLSNNQ 43
Query: 741 CELGIPF 761
C G F
Sbjct: 42 CNWGSNF 22
Score = 181 bits (389), Expect(2) = 2e-050
Identities = 86/123 (69%), Positives = 91/123 (73%)
Frame = +1 / -1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 407 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 228
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAM 735
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMKN VW*FF A
Sbjct: 227 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMKNFVW*FF*AT 48
Query: 736 INV 744
I+V
Sbjct: 47 ISV 39
Score = 120 bits (257), Expect(2) = 1e-030
Identities = 67/119 (56%), Positives = 69/119 (57%)
Frame = -2 / +2
Query: 751 PSSH*SLPRRITTLNFSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTI 572
P H* L RRITT +FS L+ M LALLL S IQG TC MLE*LG GQ
Sbjct: 32 PQLH*LLLRRITTQSFSCLDLLTMSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHIT 211
Query: 571 TSCMTR*ASILMTCRSWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
SCM R MTCR C RSL CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 212 ISCMMRYTLPRMTCRILCIRSLMCTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 388
Score = 119 bits (255), Expect = 2e-026
Identities = 63/117 (53%), Positives = 73/117 (62%)
Frame = +2 / -2
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 388 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 209
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSGQ*SM* 745
+ LA SQSFQH TC++ +SLD R H Q *K CGDSS Q S+*
Sbjct: 208 NVLALLSQSFQHERTCKSHNSLDGRQHYQQQCQEGHCQEIQA*KTLCGDSSEQQSV* 38
Score = 98.2 bits (208), Expect(2) = 5e-024
Identities = 48/86 (55%), Positives = 55/86 (63%)
Frame = -3 / +3
Query: 639 KELRFLHVFTCWNDWDYQANSLSHPA*RDRLQS**PXXXXXXXXLRVPKEHNSHISCCSH 460
KEL LHV +CWNDWD +AN+L +PA* D L *P L VPKEHNS+ISC S+
Sbjct: 144 KEL*LLHVRSCWNDWDNKANTLPYPA**DTLCRG*PAGSCAFALLCVPKEHNSNISCFSN 323
Query: 459 LLRPPCSRPGWAVHKVRRDVGDFI*P 382
LL CS G AVHKV DV D + P
Sbjct: 324 LLCTSCSCSGGAVHKV**DVRDVVEP 401
Score = 51.9 bits (107), Expect(2) = 2e-077
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / +1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 433 PVQELPRLHEKVRSSMFFC*A 495
Score = 48.7 bits (100), Expect(2) = 9e-054
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / -1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 512 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 405
Score = 38.6 bits (78), Expect(2) = 2e-050
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / -3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 492 SAEEHAAADFLMETRQLLHRAAGSRGV 412
Score = 33.1 bits (66), Expect(2) = 1e-030
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 386 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 496
Score = 33.1 bits (66), Expect(2) = 5e-024
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 744 HIDHCPEESPH*IFHSW 694
+ D C EESPH +FH+W
Sbjct: 39 YTDCCSEESPHKVFHAW 89
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 258 bits (558), Expect(2) = 2e-077
Identities = 101/114 (88%), Positives = 107/114 (93%)
Frame = -1 / -2
Query: 743 TLIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHIL 564
TLI+AQKNHHTKFF+PG PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHIL
Sbjct: 640 TLIVAQKNHHTKFFMPGSPDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHIL 461
Query: 563 HDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
HDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 460 HDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 299
Score = 181 bits (389), Expect(2) = 2e-053
Identities = 86/123 (69%), Positives = 91/123 (73%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 273 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 452
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FFWAM 735
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMKN VW*FF A
Sbjct: 453 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMKNFVW*FF*AT 632
Query: 736 INV 744
I+V
Sbjct: 633 ISV 641
Score = 179 bits (386), Expect(2) = 6e-050
Identities = 70/121 (57%), Positives = 94/121 (77%)
Frame = +3 / +2
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 278 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 457
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLGNDQ 740
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+EK VVILL N+Q
Sbjct: 458 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHEKLCVVILLSNNQ 637
Query: 741 C 743
C
Sbjct: 638 C 640
Score = 119 bits (254), Expect = 3e-026
Identities = 62/116 (53%), Positives = 72/116 (62%)
Frame = +2 / +1
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 292 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 471
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSGQ*SM 742
+ LA SQSFQH TC++ +SLD R H Q *K CGDSS Q S+
Sbjct: 472 NVLALLSQSFQHERTCKSHNSLDGRQHYQQQCQEGHCQEIQA*KTLCGDSSEQQSV 639
Score = 118 bits (252), Expect(2) = 5e-030
Identities = 66/116 (56%), Positives = 68/116 (58%)
Frame = -2 / -3
Query: 742 H*SLPRRITTLNFSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSC 563
H* L RRITT +FS L+ M LALLL S IQG TC MLE*LG GQ SC
Sbjct: 639 H*LLLRRITTQSFSCLDLLTMSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISC 460
Query: 562 MTR*ASILMTCRSWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
M R MTCR C RSL CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 459 MMRYTLPRMTCRILCIRSLMCTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 292
Score = 98.2 bits (208), Expect(2) = 8e-025
Identities = 48/86 (55%), Positives = 55/86 (63%)
Frame = -3 / -1
Query: 639 KELRFLHVFTCWNDWDYQANSLSHPA*RDRLQS**PXXXXXXXXLRVPKEHNSHISCCSH 460
KEL LHV +CWNDWD +AN+L +PA* D L *P L VPKEHNS+ISC S+
Sbjct: 536 KEL*LLHVRSCWNDWDNKANTLPYPA**DTLCRG*PAGSCAFALLCVPKEHNSNISCFSN 357
Query: 459 LLRPPCSRPGWAVHKVRRDVGDFI*P 382
LL CS G AVHKV DV D + P
Sbjct: 356 LLCTSCSCSGGAVHKV**DVRDVVEP 279
Score = 51.9 bits (107), Expect(2) = 2e-077
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -2
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 247 PVQELPRLHEKVRSSMFFC*A 185
Score = 48.7 bits (100), Expect(2) = 2e-053
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 168 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 275
Score = 38.6 bits (78), Expect(2) = 6e-050
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 188 SAEEHAAADFLMETRQLLHRAAGSRGV 268
Score = 35.9 bits (72), Expect(2) = 8e-025
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3 / -1
Query: 744 HIDHCPEESPH*IFHSW 694
H D C EESPH +FH+W
Sbjct: 641 HTDCCSEESPHKVFHAW 591
Score = 33.1 bits (66), Expect(2) = 5e-030
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -3
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 294 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 184
>gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 5', mRNA sequence
Length = 593
Score = 288 bits (624), Expect = 3e-077
Identities = 113/128 (88%), Positives = 122/128 (95%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIF 849
REWPL+SKYRASVR+QSPK+EMIDSLFKP+ T+DDGL+RECLIDFYTSSGKRKPDQ+IIF
Sbjct: 208 REWPLVSKYRASVRSQSPKLEMIDSLFKPQGTEDDGLVRECLIDFYTSSGKRKPDQIIIF 387
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAG 669
RDGVSESQFNQVLNIEL QIIEACKFLDE WNPKFTLI+AQKNHHTKFF+PG PDNVP G
Sbjct: 388 RDGVSESQFNQVLNIELDQIIEACKFLDENWNPKFTLIVAQKNHHTKFFMPGSPDNVPPG 567
Query: 668 TVVDNKVC 645
TVVDN VC
Sbjct: 568 TVVDNAVC 591
Score = 207 bits (447), Expect = 8e-053
Identities = 99/139 (71%), Positives = 103/139 (74%)
Frame = +1 / -1
Query: 646 QTLLSTTVPAGTLSGFPGMKNLVW*FFWAMINVNLGFHFSSRNLQASMICCNSMFSTWLN 825
QT LSTTVP GTLSG PGMKN VW*FF A I+VNLGF FSS+NLQAS+I NSMFST LN
Sbjct: 590 QTALSTTVPGGTLSGDPGMKNFVW*FF*ATISVNLGFQFSSKNLQASII*SNSMFST*LN 411
Query: 826 *LSLTPSLKMMTWSGFLFPELV*KXXXXXXXXXXXXXXXGLNNESIISIFGDWVRTDALY 1005
LSLTPSLKMM SGFLFPELV*K GLNNESIIS FGD RT+ALY
Sbjct: 410 WLSLTPSLKMMI*SGFLFPELV*KSMRHSRTRPSSSVPCGLNNESIISSFGDCERTEALY 231
Query: 1006 FEIRGHSRELTTAATDXTS 1062
FE RGHSRE TTAA D S
Sbjct: 230 FETRGHSREPTTAAMDGIS 174
Score = 179 bits (385), Expect = 3e-044
Identities = 75/138 (54%), Positives = 99/138 (71%)
Frame = +3 / -3
Query: 648 DFVVNNSASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKL 827
D ++NNSA +I+ SR+EK VVILL N+QCELG+P I++ A LN+L+ +VQHL+KL
Sbjct: 588 DSIINNSARRDIVRRSRHEKLCVVILLSNNQCELGVPIFIQELAGLNNLI*FDVQHLIKL 409
Query: 828 TFTNTVPEDDDLVRLSLP*TGVEVNQTLPNQTIVISFPWLKQRVNHFHFW*LGADRCSVF 1007
NT+PEDDDL+ SL TGVEVN+TLPN+ I+ S WL+Q + HF W*L A +F
Sbjct: 408 ALANTIPEDDDLIWFSLSRTGVEVNETLPNKAIIFSSLWLEQ*IYHF*LW*LRAH*SPIF 229
Query: 1008 RDKRPFTRTNHSSNRXYL 1061
RDK PF+RTN+ N Y+
Sbjct: 228 RDKGPFSRTNNCCNGWYI 175
Score = 124 bits (266), Expect = 7e-028
Identities = 62/113 (54%), Positives = 74/113 (65%)
Frame = -3 / +3
Query: 1032 FS*MASYLEIQSICPHPITKNGND*LVV*ATGN**RWSDSGVSD*LLHQFREEKA*PSHH 853
FS MA LEI +TK ND +V AT N* W SGVS *LLHQF +EK HH
Sbjct: 204 FSRMAPCLEI*GFSALAVTKARNDRFIVQATRN*R*WPCSGVSH*LLHQFWKEKTRSDHH 383
Query: 852 LQGRC**KSV*PGAEH*VATNH*GLQIS**EMESQVHIDHCPEESPH*IFHSW 694
LQG C* + V* GAEH + +N+*GLQ+ *++E QVH D C EESPH +FH+W
Sbjct: 384 LQGWC*REPV*SGAEHRIRSNY*GLQVLG*KLEPQVHTDCCSEESPHKVFHAW 542
Score = 116 bits (248), Expect = 2e-025
Identities = 64/118 (54%), Positives = 68/118 (57%)
Frame = +2 / -2
Query: 680 HYLAFQE*KI*CGDSSGQ*SM*TWDSISHQEICKPQ*FVATQCSAPG*TDFH*HRP*R** 859
H Q *K CGDSS Q S+*TW S H C+PQ*F +CSAP *T *H P*R**
Sbjct: 556 HCQEIQA*KTLCGDSSEQQSV*TWGSNFHPRTCRPQ*FDLIRCSAPD*TGSR*HHP*R** 377
Query: 860 LGQAFSSLNWCRSQSDTPESDHRHQFPVA*TTSQSFPFLVIGCGQMLCISR*EAIHEN 1033
FS NWCRSQ DTPE H QF VA*T + SF LV ISR AI EN
Sbjct: 376 SDLVFSFQNWCRSQ*DTPEQGHHLQFLVA*TMNLSFLALVTASALKPYISRQGAILEN 203
Score = 111 bits (236), Expect = 1e-023
Identities = 64/118 (54%), Positives = 74/118 (62%)
Frame = -2 / +2
Query: 1012 SRNTEHLSAPNHQKWK*LTRCLSHGKLMTMV*FGSV*LTSTPVQGRESLTKSSSSGTVLV 833
SRN A +HQ K* C SH +L M FGSV LTSTPV RE+ +SSSSG VL
Sbjct: 224 SRNIGLQCARSHQS*K**IHCSSHKELKMMALFGSVSLTSTPVLERENQIRSSSSGMVLA 403
Query: 832 KVSLTRC*TLSCNKSLRLANFLMRNGIPSSH*SLPRRITTLNFSFLESQIMFQLALLL 659
+ SL RC*T + K LR A+ M+ G PSSH* L RRITT +FS L+ M LALLL
Sbjct: 404 RASLIRC*TSN*IKLLRPASSWMKIGTPSSH*LLLRRITTQSFSCLDLLTMSLLALLL 577
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 252 bits (545), Expect(2) = 1e-075
Identities = 98/111 (88%), Positives = 104/111 (93%)
Frame = -1 / +3
Query: 734 IAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDE 555
+AQKNHHTKFF+PG PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDE
Sbjct: 12 VAQKNHHTKFFMPGSPDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDE 191
Query: 554 IGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
I F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 192 IHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 344
Score = 177 bits (381), Expect(2) = 3e-052
Identities = 83/117 (70%), Positives = 87/117 (74%)
Frame = +1 / -2
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 370 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 191
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW*FF 726
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMKN VW*FF
Sbjct: 190 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMKNFVW*FF 20
Score = 176 bits (379), Expect(2) = 6e-049
Identities = 69/121 (57%), Positives = 92/121 (76%)
Frame = +3 / -1
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 365 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 186
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLGNDQ 740
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+EK VVILL N
Sbjct: 185 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHEKLCVVILLSNTS 6
Query: 741 C 743
C
Sbjct: 5 C 3
Score = 118 bits (253), Expect = 4e-026
Identities = 61/113 (53%), Positives = 70/113 (61%)
Frame = +2 / -3
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 351 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 172
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDRLXXXXXXXLEHYLAFQE*KI*CGDSSGQ 733
+ LA SQSFQH TC++ +SLD R H Q *K CGDSS Q
Sbjct: 171 NVLALLSQSFQHERTCKSHNSLDGRQHYQQQCQEGHCQEIQA*KTLCGDSSEQ 13
Score = 116 bits (247), Expect(2) = 3e-029
Identities = 65/116 (56%), Positives = 67/116 (57%)
Frame = -2 / +1
Query: 742 H*SLPRRITTLNFSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSC 563
H L RRITT +FS L+ M LALLL S IQG TC MLE*LG GQ SC
Sbjct: 4 HEVLLRRITTQSFSCLDLLTMSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISC 183
Query: 562 MTR*ASILMTCRSWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
M R MTCR C RSL CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 184 MMRYTLPRMTCRILCIRSLMCTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 351
Score = 98.2 bits (208), Expect(2) = 2e-023
Identities = 48/86 (55%), Positives = 55/86 (63%)
Frame = -3 / +2
Query: 639 KELRFLHVFTCWNDWDYQANSLSHPA*RDRLQS**PXXXXXXXXLRVPKEHNSHISCCSH 460
KEL LHV +CWNDWD +AN+L +PA* D L *P L VPKEHNS+ISC S+
Sbjct: 107 KEL*LLHVRSCWNDWDNKANTLPYPA**DTLCRG*PAGSCAFALLCVPKEHNSNISCFSN 286
Query: 459 LLRPPCSRPGWAVHKVRRDVGDFI*P 382
LL CS G AVHKV DV D + P
Sbjct: 287 LLCTSCSCSGGAVHKV**DVRDVVEP 364
Score = 51.9 bits (107), Expect(2) = 1e-075
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / +3
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 396 PVQELPRLHEKVRSSMFFC*A 458
Score = 48.7 bits (100), Expect(2) = 3e-052
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / -2
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 475 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 368
Score = 38.6 bits (78), Expect(2) = 6e-049
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / -1
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 455 SAEEHAAADFLMETRQLLHRAAGSRGV 375
Score = 33.1 bits (66), Expect(2) = 3e-029
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / +1
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 349 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 459
Score = 31.3 bits (62), Expect(2) = 2e-023
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / +2
Query: 732 CPEESPH*IFHSW 694
C EESPH +FH+W
Sbjct: 14 CSEESPHKVFHAW 52
>gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G18f, mRNA sequence
Length = 1070
Score = 226 bits (487), Expect(3) = 2e-073
Identities = 91/103 (88%), Positives = 98/103 (95%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIF 849
REWPL+SKYRASVR+QSPK+EMIDSLFKP+ T+DDGL+RECLIDFYTSSGKRKPDQ IIF
Sbjct: 340 REWPLVSKYRASVRSQSPKLEMIDSLFKPQGTEDDGLVRECLIDFYTSSGKRKPDQNIIF 519
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKN 720
RDGVSESQFNQVLNIEL QIIEACK LDE WNPKFTLI+AQKN
Sbjct: 520 RDGVSESQFNQVLNIELDQIIEACKVLDENWNPKFTLIVAQKN 648
Score = 154 bits (331), Expect(4) = 1e-051
Identities = 76/114 (66%), Positives = 81/114 (71%)
Frame = +1 / -1
Query: 721 FFWAMINVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLKMMTWSGFLFPELV*KX 900
FF A I+VNLGF FSS+ LQAS+I NSMFST LN LSLTPSLKM+ SGFLFPELV*K
Sbjct: 647 FF*ATISVNLGFQFSSKTLQASII*SNSMFST*LNWLSLTPSLKMIF*SGFLFPELV*KS 468
Query: 901 XXXXXXXXXXXXXXGLNNESIISIFGDWVRTDALYFEIRGHSRELTTAATDXTS 1062
GLNNESIIS FGD RT+ALYFE RGHSRE TTAA D S
Sbjct: 467 MRHSRTRPSSSVPCGLNNESIISSFGDCERTEALYFETRGHSREPTTAAMDGIS 306
Score = 151 bits (324), Expect = 7e-036
Identities = 63/114 (55%), Positives = 81/114 (71%)
Frame = +3 / -3
Query: 720 ILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTVPEDDDLVRLSLP*TGVEV 899
ILL N+QCELG+P I+ FA LN+L+ +VQHL+KL NT+PEDD L+ SL TGVEV
Sbjct: 648 ILLSNNQCELGVPIFIQDFAGLNNLI*FDVQHLIKLALANTIPEDDILIWFSLSRTGVEV 469
Query: 900 NQTLPNQTIVISFPWLKQRVNHFHFW*LGADRCSVFRDKRPFTRTNHSSNRXYL 1061
N+TLPN+ I+ S WL+Q + HF W*L A +FRDK PF+RTN+ N Y+
Sbjct: 468 NETLPNKAIIFSSLWLEQ*IYHF*LW*LRAH*SPIFRDKGPFSRTNNCCNGWYI 307
Score = 102 bits (217), Expect = 4e-021
Identities = 56/104 (53%), Positives = 61/104 (58%)
Frame = +2 / -2
Query: 722 SSGQ*SM*TWDSISHQEICKPQ*FVATQCSAPG*TDFH*HRP*R**LGQAFSSLNWCRSQ 901
SS Q S+*TW S H +C+PQ*F +CSAP *T *H P*R* FS NWCRSQ
Sbjct: 646 SSEQQSV*TWGSNFHPRLCRPQ*FDLIRCSAPD*TGSR*HHP*R*YSDLVFSFQNWCRSQ 467
Query: 902 SDTPESDHRHQFPVA*TTSQSFPFLVIGCGQMLCISR*EAIHEN 1033
DTPE H QF VA*T + SF LV ISR AI EN
Sbjct: 466 *DTPEQGHHLQFLVA*TMNLSFLALVTASALKPYISRQGAILEN 335
Score = 99.6 bits (211), Expect(3) = 2e-024
Identities = 55/104 (52%), Positives = 65/104 (62%)
Frame = -3 / +3
Query: 1032 FS*MASYLEIQSICPHPITKNGND*LVV*ATGN**RWSDSGVSD*LLHQFREEKA*PSHH 853
FS MA LEI +TK ND +V AT N* W SGVS *LLHQF +EK +H
Sbjct: 336 FSRMAPCLEI*GFSALAVTKARNDRFIVQATRN*R*WPCSGVSH*LLHQFWKEKTRSEYH 515
Query: 852 LQGRC**KSV*PGAEH*VATNH*GLQIS**EMESQVHIDHCPEE 721
LQG C* + V* GAEH + +N+*GLQ *++E QVH D C EE
Sbjct: 516 LQGWC*REPV*SGAEHRIRSNY*GLQSLG*KLEPQVHTDCCSEE 647
Score = 58.3 bits (121), Expect(3) = 2e-073
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = -1 / +1
Query: 587 RPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVA 465
R THYH LHDE DDLQ+L HSLSYVY RS VV+
Sbjct: 778 RATHYHXLHDENTLAADDLQDLGHSLSYVYXRSQQPYQVVS 900
Score = 43.2 bits (88), Expect(4) = 1e-051
Identities = 22/42 (52%), Positives = 23/42 (54%)
Frame = +1 / -2
Query: 592 VPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLVW 717
VPII + F G QT LSTTV GT PGMKN VW
Sbjct: 775 VPIISSMSAHVXVIFPGWQTALSTTVQXGTCQXDPGMKNXVW 650
Score = 39.6 bits (80), Expect(4) = 1e-051
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3 / -3
Query: 489 APLVHVRERVHQLLQVIRIEAYLVMQDVIVSWPGSPN 599
AP VH+RE + ++LQVI + L+MQ +++ P SP+
Sbjct: 876 APXVHIREGMPKILQVIGGKCILIMQXMVMCGPVSPS 766
Score = 31.8 bits (63), Expect(3) = 2e-073
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1 / +2
Query: 638 RNFDFYMCSHAGMIGTTRP 582
R +D YMC+HAG G T P
Sbjct: 728 RKYDXYMCAHAGNDGDTGP 784
Score = 26.3 bits (51), Expect(3) = 2e-024
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3 / +1
Query: 639 KELRFLHVFTCWNDWDYQA 583
+E+ LHV +CW W ++A
Sbjct: 727 QEI*LLHVRSCWK*WGHRA 783
Score = 24.9 bits (48), Expect(3) = 2e-024
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2 / +2
Query: 565 CMTR*ASILMTCRSWCTRSLTCTKGA 488
CM R MTCR SL CT GA
Sbjct: 800 CMMRIHLPPMTCRILGIPSLMCTXGA 877
Score = 23.1 bits (44), Expect(4) = 1e-051
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3 / -3
Query: 360 ARRGMPPMAR*SLRHLVELYELPNLGGCKV 449
AR+ + R +L++LYE+ L CKV
Sbjct: 1002 ARKCVQQPVRXRSGNLLKLYEMRPLNSCKV 913
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 266 bits (576), Expect = 1e-070
Identities = 110/173 (63%), Positives = 131/173 (75%)
Frame = -1 / +1
Query: 812 LNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRN 633
+N+E+ QII+A + + + PK T+IIAQKNHHTK F PDNVPAGTVVD+ + HP+
Sbjct: 10 VNLEVDQIIKAYQNMGQGPPPKITVIIAQKNHHTKLFQADAPDNVPAGTVVDSGIVHPKQ 189
Query: 632 FDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICY 453
+DFYMC+HAG IGT+RPTHYH+L D+IGF PD+LQ+LV SLSYVYQRSTTAISVVAPICY
Sbjct: 190 YDFYMCAHAGPIGTSRPTHYHVLLDQIGFTPDELQKLVLSLSYVYQRSTTAISVVAPICY 369
Query: 452 AHLAAAQVGQFIKFDEMXXXXXXXXXXXXXXSVPVQELPRLHEKVRSSMFFC* 294
AHLAAAQ+ QFIKF+E + V ELPRLH V SSMFFC*
Sbjct: 370 AHLAAAQMSQFIKFEEFADTSSGSGVPSSSTAATVPELPRLHSDVCSSMFFC* 528
Score = 153 bits (329), Expect = 1e-036
Identities = 85/153 (55%), Positives = 93/153 (60%)
Frame = +1 / -2
Query: 295 QQKNMELLTFSCRRGSSWTGTLPAEVCPPWLDEVSDISSNFMNCPTWAAARWA*QMGATT 474
QQKN+EL T C RGSS T + P DEVS SSNFMN AAAR A*Q+GATT
Sbjct: 527 QQKNIELQTSECSRGSSGTVAAVDDEGTPLPDEVSANSSNFMNWLICAAARCA*QIGATT 348
Query: 475 DMAVVLLWYXXXXXXXXXXXXXGLKPISSCRM***VGLVVPIIPACEHM*KSKFLG*QTL 654
D+AVVLLWY G+KPI S + ** VGL VPI PA HM*KS G*
Sbjct: 347 DIAVVLLWYT*ESERTSFWSSSGVKPI*SSKT**WVGLEVPIGPA*AHM*KSYCFG*TIP 168
Query: 655 LSTTVPAGTLSGFPGMKNLVW*FFWAMINVNLG 753
STTVPAGTLSG + VW*FF A+I V G
Sbjct: 167 ESTTVPAGTLSGASAWNSFVW*FF*AIITVIFG 69
Score = 107 bits (228), Expect = 1e-022
Identities = 60/141 (42%), Positives = 79/141 (56%)
Frame = +3 / -1
Query: 387 R*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLVMQ 566
R*S+ L+E YEL +L CKV V D ++ Y APLVH+ +R + L+ I E L+ Q
Sbjct: 435 R*SISKLLEFYELAHLRCCKVRVTDRCHHRYCSGAPLVHIGKRKN*FLEFIWCETNLIKQ 256
Query: 567 DVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEKFSVVILLGNDQCE 746
D+I+ P S M THVEI + M + V+ S SWNIIW E+F VVILL N+ C
Sbjct: 255 DMIMGGP*GAYRSRMSTHVEIILFRMNNTRVHYSPSWNIIWCISLEQFRVVILLSNNNCN 76
Query: 747 LGIPFLIKKFASLNDLLQLNV 809
L L SL L+ L +
Sbjct: 75 LWRWPLTHILVSLYYLINLEI 13
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 232 bits (501), Expect(2) = 1e-069
Identities = 91/103 (88%), Positives = 96/103 (93%)
Frame = -1 / +2
Query: 710 KFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDL 531
KFF+PG PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDL
Sbjct: 11 KFFMPGSPDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDL 190
Query: 530 QELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
Q+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 191 QDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 319
Score = 165 bits (354), Expect(2) = 1e-048
Identities = 78/113 (69%), Positives = 83/113 (73%)
Frame = +1 / -2
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 345 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 166
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKNLV 714
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMKN +
Sbjct: 165 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMKNFL 7
Score = 161 bits (346), Expect(2) = 2e-044
Identities = 62/109 (56%), Positives = 85/109 (77%)
Frame = +3 / -1
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 340 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 161
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEK 707
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+EK
Sbjct: 160 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHEK 14
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / -3
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 326 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 147
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 146 NVLALLSQSFQHERTCKSHNSLDGR 72
Score = 104 bits (222), Expect(2) = 7e-026
Identities = 58/105 (55%), Positives = 60/105 (57%)
Frame = -2 / +3
Query: 709 NFSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTC 530
+FS L+ M LALLL S IQG TC MLE*LG GQ SCM R MTC
Sbjct: 12 SFSCLDLLTMSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTC 191
Query: 529 RSWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
R C RSL CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 192 RILCIRSLMCTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 326
Score = 51.9 bits (107), Expect(2) = 1e-069
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / +2
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 371 PVQELPRLHEKVRSSMFFC*A 433
Score = 48.7 bits (100), Expect(2) = 1e-048
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / -2
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 450 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 343
Score = 38.6 bits (78), Expect(2) = 2e-044
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / -1
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 430 SAEEHAAADFLMETRQLLHRAAGSRGV 350
Score = 33.1 bits (66), Expect(2) = 7e-026
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / +3
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 324 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 434
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 230 bits (496), Expect(2) = 5e-069
Identities = 90/102 (88%), Positives = 95/102 (93%)
Frame = -1 / -2
Query: 707 FFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQ 528
FF+PG PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ
Sbjct: 661 FFMPGSPDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQ 482
Query: 527 ELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 481 DLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 356
Score = 164 bits (353), Expect(2) = 2e-048
Identities = 78/111 (70%), Positives = 82/111 (73%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 330 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 509
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMKN 708
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMKN
Sbjct: 510 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMKN 662
Score = 161 bits (346), Expect(2) = 2e-044
Identities = 62/109 (56%), Positives = 85/109 (77%)
Frame = +3 / +2
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 335 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 514
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNEK 707
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+EK
Sbjct: 515 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHEK 661
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 349 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 528
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 529 NVLALLSQSFQHERTCKSHNSLDGR 603
Score = 104 bits (221), Expect(2) = 9e-026
Identities = 58/104 (55%), Positives = 59/104 (56%)
Frame = -2 / -3
Query: 706 FSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCR 527
FS L+ M LALLL S IQG TC MLE*LG GQ SCM R MTCR
Sbjct: 660 FSCLDLLTMSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTCR 481
Query: 526 SWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
C RSL CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 480 ILCIRSLMCTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 349
Score = 51.9 bits (107), Expect(2) = 5e-069
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -2
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 304 PVQELPRLHEKVRSSMFFC*A 242
Score = 48.7 bits (100), Expect(2) = 2e-048
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 225 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 332
Score = 38.6 bits (78), Expect(2) = 2e-044
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 245 SAEEHAAADFLMETRQLLHRAAGSRGV 325
Score = 33.1 bits (66), Expect(2) = 9e-026
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -3
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 351 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 241
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 227 bits (490), Expect(2) = 4e-068
Identities = 89/101 (88%), Positives = 94/101 (93%)
Frame = -1 / -3
Query: 704 FIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQE 525
F+PG PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ+
Sbjct: 700 FMPGSPDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQD 521
Query: 524 LVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 520 LVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 398
Score = 161 bits (347), Expect(2) = 1e-047
Identities = 77/110 (70%), Positives = 81/110 (73%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 372 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 551
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFPGMK 705
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLSG PGMK
Sbjct: 552 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLSGDPGMK 701
Score = 159 bits (341), Expect(2) = 9e-044
Identities = 61/108 (56%), Positives = 84/108 (77%)
Frame = +3 / +2
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 377 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 556
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNIIWLSRNE 704
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+ SR+E
Sbjct: 557 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIVRRSRHE 700
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 391 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 570
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 571 NVLALLSQSFQHERTCKSHNSLDGR 645
Score = 104 bits (221), Expect(2) = 9e-026
Identities = 58/104 (55%), Positives = 59/104 (56%)
Frame = -2 / -1
Query: 706 FSFLESQIMFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCR 527
FS L+ M LALLL S IQG TC MLE*LG GQ SCM R MTCR
Sbjct: 702 FSCLDLLTMSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTCR 523
Query: 526 SWCTRSLTCTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
C RSL CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 522 ILCIRSLMCTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 391
Score = 51.9 bits (107), Expect(2) = 4e-068
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -3
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 346 PVQELPRLHEKVRSSMFFC*A 284
Score = 48.7 bits (100), Expect(2) = 1e-047
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 267 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 374
Score = 38.6 bits (78), Expect(2) = 9e-044
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 287 SAEEHAAADFLMETRQLLHRAAGSRGV 367
Score = 33.1 bits (66), Expect(2) = 9e-026
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -1
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 393 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 283
>gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. vulgare cDNA clone HX10N18
3-PRIME, mRNA sequence
Length = 676
Score = 215 bits (464), Expect(2) = 1e-064
Identities = 85/96 (88%), Positives = 89/96 (92%)
Frame = -1 / -1
Query: 689 PDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSL 510
PDNVP GTVVDN VCHPRN+DFYMC+HAGMIGTT PTHYHILHDEI F DDLQ+LVHSL
Sbjct: 676 PDNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTXPTHYHILHDEIHFAADDLQDLVHSL 497
Query: 509 SYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
SYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 496 SYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 389
Score = 150 bits (322), Expect(2) = 3e-044
Identities = 57/102 (55%), Positives = 79/102 (77%)
Frame = +3 / +2
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 368 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 547
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNII 686
MQD+++ W PNHSSM HV++ +PWM D ++NNSA +I+
Sbjct: 548 MQDMVMCWXCCPNHSSMSAHVKVIIPWMADSIINNSARRDIV 673
Score = 149 bits (321), Expect(2) = 5e-041
Identities = 72/104 (69%), Positives = 76/104 (73%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 363 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 542
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLS 687
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTLS
Sbjct: 543 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTLS 674
Score = 105 bits (224), Expect = 4e-022
Identities = 50/85 (58%), Positives = 59/85 (69%)
Frame = +2 / +1
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 382 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 561
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ L SQSFQH TC++ +SLD R
Sbjct: 562 NVLXLLSQSFQHERTCKSHNSLDGR 636
Score = 96.8 bits (205), Expect(2) = 1e-023
Identities = 54/96 (56%), Positives = 54/96 (56%)
Frame = -2 / -2
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LALLL S IQG TC MLE*LG Q SCM R MTCR C RSL
Sbjct: 669 MSLLALLLIMLSAIQGIMTFTCALMLE*LGQQXQHITISCMMRYTLPRMTCRILCIRSLM 490
Query: 502 CTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 489 CTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 382
Score = 51.9 bits (107), Expect(2) = 1e-064
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 337 PVQELPRLHEKVRSSMFFC*A 275
Score = 48.7 bits (100), Expect(2) = 3e-044
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 258 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 365
Score = 38.6 bits (78), Expect(2) = 5e-041
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 278 SAEEHAAADFLMETRQLLHRAAGSRGV 358
Score = 33.1 bits (66), Expect(2) = 1e-023
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 384 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 274
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 215 bits (463), Expect(2) = 2e-064
Identities = 85/95 (89%), Positives = 89/95 (93%)
Frame = -1 / -1
Query: 686 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 507
DNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ+LVHSLS
Sbjct: 674 DNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLS 495
Query: 506 YVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
YVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 494 YVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 390
Score = 154 bits (331), Expect(2) = 2e-045
Identities = 58/102 (56%), Positives = 80/102 (78%)
Frame = +3 / +3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 369 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 548
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNII 686
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+
Sbjct: 549 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIV 674
Score = 148 bits (317), Expect(2) = 2e-040
Identities = 71/103 (68%), Positives = 75/103 (72%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 364 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 543
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTL 684
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTL
Sbjct: 544 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTL 672
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +2
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 383 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 562
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 563 NVLALLSQSFQHERTCKSHNSLDGR 637
Score = 100 bits (212), Expect(2) = 2e-024
Identities = 55/96 (57%), Positives = 55/96 (57%)
Frame = -2 / -2
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LALLL S IQG TC MLE*LG GQ SCM R MTCR C RSL
Sbjct: 670 MSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTCRILCIRSLM 491
Query: 502 CTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 490 CTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 383
Score = 51.9 bits (107), Expect(2) = 2e-064
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 338 PVQELPRLHEKVRSSMFFC*A 276
Score = 48.7 bits (100), Expect(2) = 2e-045
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 259 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 366
Score = 38.6 bits (78), Expect(2) = 2e-040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 279 SAEEHAAADFLMETRQLLHRAAGSRGV 359
Score = 33.1 bits (66), Expect(2) = 2e-024
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 385 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 275
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 215 bits (463), Expect(2) = 2e-064
Identities = 85/95 (89%), Positives = 89/95 (93%)
Frame = -1 / -1
Query: 686 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 507
DNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ+LVHSLS
Sbjct: 626 DNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLS 447
Query: 506 YVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
YVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 446 YVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 342
Score = 154 bits (331), Expect(2) = 2e-045
Identities = 58/102 (56%), Positives = 80/102 (78%)
Frame = +3 / +3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 321 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 500
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNII 686
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+
Sbjct: 501 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIV 626
Score = 148 bits (317), Expect(2) = 2e-040
Identities = 71/103 (68%), Positives = 75/103 (72%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 316 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 495
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTL 684
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTL
Sbjct: 496 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTL 624
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +2
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 335 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 514
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 515 NVLALLSQSFQHERTCKSHNSLDGR 589
Score = 100 bits (212), Expect(2) = 2e-024
Identities = 55/96 (57%), Positives = 55/96 (57%)
Frame = -2 / -2
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LALLL S IQG TC MLE*LG GQ SCM R MTCR C RSL
Sbjct: 622 MSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTCRILCIRSLM 443
Query: 502 CTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 442 CTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 335
Score = 51.9 bits (107), Expect(2) = 2e-064
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 290 PVQELPRLHEKVRSSMFFC*A 228
Score = 48.7 bits (100), Expect(2) = 2e-045
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 211 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 318
Score = 38.6 bits (78), Expect(2) = 2e-040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 231 SAEEHAAADFLMETRQLLHRAAGSRGV 311
Score = 33.1 bits (66), Expect(2) = 2e-024
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 337 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 227
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 215 bits (463), Expect(2) = 2e-064
Identities = 85/95 (89%), Positives = 89/95 (93%)
Frame = -1 / -1
Query: 686 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 507
DNVP GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ+LVHSLS
Sbjct: 626 DNVPPGTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLS 447
Query: 506 YVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
YVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 446 YVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 342
Score = 154 bits (331), Expect(2) = 2e-045
Identities = 58/102 (56%), Positives = 80/102 (78%)
Frame = +3 / +3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 321 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 500
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSASWNII 686
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA +I+
Sbjct: 501 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSARRDIV 626
Score = 148 bits (317), Expect(2) = 2e-040
Identities = 71/103 (68%), Positives = 75/103 (72%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 316 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 495
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTL 684
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP GTL
Sbjct: 496 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVPGGTL 624
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +2
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 335 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 514
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 515 NVLALLSQSFQHERTCKSHNSLDGR 589
Score = 100 bits (212), Expect(2) = 2e-024
Identities = 55/96 (57%), Positives = 55/96 (57%)
Frame = -2 / -2
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LALLL S IQG TC MLE*LG GQ SCM R MTCR C RSL
Sbjct: 622 MSLLALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTCRILCIRSLM 443
Query: 502 CTKGAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
CTKGAQQ YQL L SA LQ R SS*S RC R
Sbjct: 442 CTKGAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 335
Score = 51.9 bits (107), Expect(2) = 2e-064
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 290 PVQELPRLHEKVRSSMFFC*A 228
Score = 48.7 bits (100), Expect(2) = 2e-045
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 211 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 318
Score = 38.6 bits (78), Expect(2) = 2e-040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 231 SAEEHAAADFLMETRQLLHRAAGSRGV 311
Score = 33.1 bits (66), Expect(2) = 2e-024
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 337 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 227
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 204 bits (441), Expect(2) = 2e-061
Identities = 81/90 (90%), Positives = 85/90 (94%)
Frame = -1 / -2
Query: 671 GTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQR 492
GTVVDN VCHPRN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ+LVHSLSYVYQR
Sbjct: 649 GTVVDNAVCHPRNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQR 470
Query: 491 STTAISVVAPICYAHLAAAQVGQFIKFDEM 402
STTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 469 STTAISVVSPICYAHLAAAQVAQFIKFDEM 380
Score = 152 bits (327), Expect(2) = 7e-045
Identities = 57/97 (58%), Positives = 77/97 (79%)
Frame = +3 / +2
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 359 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 538
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVPWMTDFVVNNSA 671
MQD+++ WP PNHSSM HV++ +PWM D ++NNSA
Sbjct: 539 MQDMVMCWPCCPNHSSMSAHVKVIIPWMADSIINNSA 649
Score = 141 bits (302), Expect(2) = 2e-038
Identities = 68/99 (68%), Positives = 72/99 (72%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 354 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 533
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVP 672
SSCR+ * VGLVVPIIPA HM*KS FLG QT LSTTVP
Sbjct: 534 SSCRIW*CVGLVVPIIPA*AHM*KS*FLGWQTALSTTVP 650
Score = 107 bits (228), Expect = 1e-022
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 395 SPTSRRTL*TAQPGRLQGGRSRWEQQLIWLLCSFGTRKRASAPAPAGHQD*SLSRHAGCD 574
S TS +TL*TA P +LQ SR E+QLI LLCSFGT KRA+A PAGH S+S HAG
Sbjct: 373 SRTSHQTL*TAPPEQLQDVHSRLEKQLILLLCSFGTHKRANAQDPAGHPRQSVSHHAGYG 552
Query: 575 SELAW*SQSFQHVNTCRNRSSLDDR 649
+ LA SQSFQH TC++ +SLD R
Sbjct: 553 NVLALLSQSFQHERTCKSHNSLDGR 627
Score = 99.6 bits (211), Expect(2) = 2e-024
Identities = 54/93 (58%), Positives = 54/93 (58%)
Frame = -2 / -3
Query: 673 LALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLTCTK 494
LALLL S IQG TC MLE*LG GQ SCM R MTCR C RSL CTK
Sbjct: 651 LALLLIMLSAIQGIMTFTCALMLE*LGQQGQHITISCMMRYTLPRMTCRILCIRSLMCTK 472
Query: 493 GAQQPYQLLLPSATPTLQPPRLGSS*SSTRCRR 395
GAQQ YQL L SA LQ R SS*S RC R
Sbjct: 471 GAQQQYQLFLQSAMHILQLLRWRSS*SLMRCPR 373
Score = 51.9 bits (107), Expect(2) = 2e-061
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -2
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 328 PVQELPRLHEKVRSSMFFC*A 266
Score = 48.7 bits (100), Expect(2) = 7e-045
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 249 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 356
Score = 38.6 bits (78), Expect(2) = 2e-038
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 269 SAEEHAAADFLMETRQLLHRAAGSRGV 349
Score = 33.1 bits (66), Expect(2) = 2e-024
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -3
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 375 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 265
>gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B24
5-PRIME, mRNA sequence
Length = 455
Score = 219 bits (473), Expect = 2e-056
Identities = 87/97 (89%), Positives = 94/97 (96%)
Frame = -1 / +3
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQVIIF 849
REWPL+SKYRASVR+QSPK+EMIDSLFKP+ T+DDGL+RECLIDFYTSSGKRKPDQ+IIF
Sbjct: 165 REWPLVSKYRASVRSQSPKLEMIDSLFKPQGTEDDGLVRECLIDFYTSSGKRKPDQIIIF 344
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTL 738
RDGVSESQFNQVLNIEL QIIEACKFLDE WNPKFTL
Sbjct: 345 RDGVSESQFNQVLNIELDQIIEACKFLDENWNPKFTL 455
Score = 152 bits (327), Expect = 3e-036
Identities = 74/108 (68%), Positives = 78/108 (72%)
Frame = +1 / -2
Query: 739 NVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLKMMTWSGFLFPELV*KXXXXXXX 918
+VNLGF FSS+NLQAS+I NSMFST LN LSLTPSLKMM SGFLFPELV*K
Sbjct: 454 SVNLGFQFSSKNLQASII*SNSMFST*LNWLSLTPSLKMMI*SGFLFPELV*KSMRHSRT 275
Query: 919 XXXXXXXXGLNNESIISIFGDWVRTDALYFEIRGHSRELTTAATDXTS 1062
GLNNESIIS FGD RT+ALYFE RGHSRE TTAA D S
Sbjct: 274 RPSSSVPCGLNNESIISSFGDCERTEALYFETRGHSREPTTAAMDGIS 131
Score = 144 bits (310), Expect = 6e-034
Identities = 59/108 (54%), Positives = 77/108 (71%)
Frame = +3 / -1
Query: 738 QCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTVPEDDDLVRLSLP*TGVEVNQTLPN 917
QCELG+P I++ A LN+L+ +VQHL+KL NT+PEDDDL+ SL TGVEVN+TLPN
Sbjct: 455 QCELGVPIFIQELAGLNNLI*FDVQHLIKLALANTIPEDDDLIWFSLSRTGVEVNETLPN 276
Query: 918 QTIVISFPWLKQRVNHFHFW*LGADRCSVFRDKRPFTRTNHSSNRXYL 1061
+ I+ S WL+Q + HF W*L A +FRDK PF+RTN+ N Y+
Sbjct: 275 KAIIFSSLWLEQ*IYHF*LW*LRAH*SPIFRDKGPFSRTNNCCNGWYI 132
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 178 bits (383), Expect(2) = 2e-053
Identities = 71/79 (89%), Positives = 75/79 (94%)
Frame = -1 / -1
Query: 638 RNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPI 459
RN+DFYMC+HAGMIGTTRPTHYHILHDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PI
Sbjct: 581 RNYDFYMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPI 402
Query: 458 CYAHLAAAQVGQFIKFDEM 402
CYAHLAAAQV QFIKFDEM
Sbjct: 401 CYAHLAAAQVAQFIKFDEM 345
Score = 131 bits (281), Expect(2) = 1e-038
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +3 / +3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 324 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 503
Query: 561 MQDVIVSWPGSPNHSSM*THVEIEVP 638
MQD+++ WP PNHSSM HV++ +P
Sbjct: 504 MQDMVMCWPCCPNHSSMSAHVKVIIP 581
Score = 121 bits (258), Expect(2) = 2e-032
Identities = 58/87 (66%), Positives = 62/87 (71%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 319 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 498
Query: 556 SSCRM***VGLVVPIIPACEHM*KSKF 636
SSCR+ * VGLVVPIIPA HM*KS F
Sbjct: 499 SSCRIW*CVGLVVPIIPA*AHM*KS*F 579
Score = 95.9 bits (203), Expect(2) = 3e-023
Identities = 47/85 (55%), Positives = 54/85 (63%)
Frame = -3 / -3
Query: 636 ELRFLHVFTCWNDWDYQANSLSHPA*RDRLQS**PXXXXXXXXLRVPKEHNSHISCCSHL 457
EL LHV +CWNDWD +AN+L +PA* D L *P L VPKEHNS+ISC S+L
Sbjct: 579 EL*LLHVRSCWNDWDNKANTLPYPA**DTLCRG*PAGSCAFALLCVPKEHNSNISCFSNL 400
Query: 456 LRPPCSRPGWAVHKVRRDVGDFI*P 382
L CS G AVHKV DV D + P
Sbjct: 399 LCTSCSCSGGAVHKV**DVRDVVEP 325
Score = 51.9 bits (107), Expect(2) = 2e-053
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 293 PVQELPRLHEKVRSSMFFC*A 231
Score = 48.7 bits (100), Expect(2) = 1e-038
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 214 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 321
Score = 38.6 bits (78), Expect(2) = 2e-032
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 234 SAEEHAAADFLMETRQLLHRAAGSRGV 314
Score = 33.1 bits (66), Expect(2) = 3e-023
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 340 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 230
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 166 bits (357), Expect(2) = 6e-050
Identities = 67/74 (90%), Positives = 70/74 (94%)
Frame = -1 / -1
Query: 623 YMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHL 444
YMC+HAGMIGTTRPTHYHILHDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHL
Sbjct: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428
Query: 443 AAAQVGQFIKFDEM 402
AAAQV QFIKFDEM
Sbjct: 427 AAAQVAQFIKFDEM 386
Score = 126 bits (270), Expect(2) = 4e-037
Identities = 49/81 (60%), Positives = 64/81 (79%)
Frame = +3 / +2
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 365 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 544
Query: 561 MQDVIVSWPGSPNHSSM*THV 623
MQD+++ WP PNHSSM HV
Sbjct: 545 MQDMVMCWPCCPNHSSMSAHV 607
Score = 115 bits (246), Expect(2) = 8e-031
Identities = 54/82 (65%), Positives = 58/82 (70%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 360 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 539
Query: 556 SSCRM***VGLVVPIIPACEHM 621
SSCR+ * VGLVVPIIPA HM
Sbjct: 540 SSCRIW*CVGLVVPIIPA*AHM 605
Score = 91.8 bits (194), Expect(2) = 4e-022
Identities = 44/80 (55%), Positives = 51/80 (63%)
Frame = -3 / -3
Query: 621 HVFTCWNDWDYQANSLSHPA*RDRLQS**PXXXXXXXXLRVPKEHNSHISCCSHLLRPPC 442
HV +CWNDWD +AN+L +PA* D L *P L VPKEHNS+ISC S+LL C
Sbjct: 605 HVRSCWNDWDNKANTLPYPA**DTLCRG*PAGSCAFALLCVPKEHNSNISCFSNLLCTSC 426
Query: 441 SRPGWAVHKVRRDVGDFI*P 382
S G AVHKV DV D + P
Sbjct: 425 SCSGGAVHKV**DVRDVVEP 366
Score = 51.9 bits (107), Expect(2) = 6e-050
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 334 PVQELPRLHEKVRSSMFFC*A 272
Score = 48.7 bits (100), Expect(2) = 4e-037
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +3
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 255 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 362
Score = 38.6 bits (78), Expect(2) = 8e-031
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 275 SAEEHAAADFLMETRQLLHRAAGSRGV 355
Score = 33.1 bits (66), Expect(2) = 4e-022
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2 / -2
Query: 400 RRLHLAMGGIPRRAASLSRSCPVCMRK*GAPCSSAEQ 290
RR + P A+ RSC V MRK A CSSAE+
Sbjct: 381 RRRRARVVATPLLPAARCRSCLVSMRKSAAACSSAER 271
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 134 bits (288), Expect(3) = 7e-049
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = -1 / +3
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD +CHP FDFY+CSHAG+ GT+RPTHYH+L DE GF D LQ+L ++
Sbjct: 411 KSGNILPGTVVDTNICHPTEFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNN 590
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L Y Y R T ++SVV P YAHLAA
Sbjct: 591 LCYTYARCTRSVSVVPPAYYAHLAA 665
Score = 73.9 bits (155), Expect(3) = 7e-049
Identities = 28/57 (49%), Positives = 37/57 (64%)
Frame = -1 / +3
Query: 872 KPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
KP ++I +RDGVSE QF QVL E+ I +AC L + PK T ++ QK HHT+ F
Sbjct: 213 KPSRIIFYRDGVSEGQFAQVLMYEMDAIRKACASLQADYQPKVTFVVVQKRHHTRLF 383
Score = 24.4 bits (47), Expect(3) = 7e-049
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1 / +3
Query: 923 GLIRECLIDFYTSSG 879
G+IRE L+ FY +G
Sbjct: 165 GMIRELLVSFYKKTG 209
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 131 bits (281), Expect(2) = 8e-043
Identities = 51/105 (48%), Positives = 70/105 (66%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 162 NNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 341
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 408
D+LQ L ++L Y Y R T ++S+V P YAHLAA + +++ D
Sbjct: 342 ADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPD 476
Score = 62.9 bits (131), Expect(2) = 8e-043
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = -1 / +3
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
RDGVSE QF QVL EL I +AC L+ + P T ++ QK HHT+ F
Sbjct: 12 RDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 158
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 137 bits (293), Expect(2) = 8e-043
Identities = 52/105 (49%), Positives = 71/105 (67%)
Frame = -1 / +1
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
NH+ + + K N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 157 NHNDQRSVDRKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFT 336
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 408
D LQ L ++L Y Y R T ++S+V P YAHLAA + +++ D
Sbjct: 337 ADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMELD 471
Score = 57.4 bits (119), Expect(2) = 8e-043
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 842 GVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
GVSE QF QVL EL I +AC L+ + P T ++ QK HHT+ F
Sbjct: 10 GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 150
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 112 bits (239), Expect(2) = 1e-040
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = -1 / +1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD +CHP FDFY+CSHAG+ GT+RPTHYH+L DE GF D LQ+L ++
Sbjct: 262 KSGNILPGTVVDTNICHPTEFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNN 441
Query: 512 LSYVYQRST 486
L Y Y R T
Sbjct: 442 LCYTYARCT 468
Score = 74.8 bits (157), Expect(2) = 1e-040
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = -1 / +1
Query: 929 DDGLIRECLIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNP 750
+DG + L+ + KP ++I +RDGVSE QF QVL E+ I +AC L + P
Sbjct: 7 EDGGMMRELLVSFYKKTGYKPSRIIFYRDGVSEGQFAQVLMYEMDAIRKACASLQADYQP 186
Query: 749 KFTLIIAQKNHHTKFF 702
K T ++ QK HHT+ F
Sbjct: 187 KVTFVVVQKRHHTRLF 234
>gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9a21 3', mRNA sequence
Length = 587
Score = 134 bits (287), Expect(2) = 2e-040
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = -1 / -1
Query: 584 PTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDE 405
PTHYHILHDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDE
Sbjct: 587 PTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDE 408
Query: 404 M 402
M
Sbjct: 407 M 405
Score = 105 bits (225), Expect(2) = 6e-031
Identities = 40/68 (58%), Positives = 55/68 (80%)
Frame = +3 / +3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 384 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 563
Query: 561 MQDVIVSW 584
MQD+++ W
Sbjct: 564 MQDMVMCW 587
Score = 93.2 bits (197), Expect(2) = 4e-024
Identities = 41/65 (63%), Positives = 45/65 (69%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 379 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 558
Query: 556 SSCRM 570
SSCR+
Sbjct: 559 SSCRI 573
Score = 51.9 bits (107), Expect(2) = 2e-040
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -1
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 353 PVQELPRLHEKVRSSMFFC*A 291
Score = 48.7 bits (100), Expect(2) = 6e-031
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 274 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 381
Score = 38.6 bits (78), Expect(2) = 4e-024
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 294 SAEEHAAADFLMETRQLLHRAAGSRGV 374
>gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006I15f, mRNA sequence
Length = 679
Score = 101 bits (215), Expect(3) = 3e-040
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = -1 / +2
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+C+HAG+ GT+RP +YH+L DE F
Sbjct: 338 NNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCNHAGIQGTSRPANYHVLWDENKFT 517
Query: 542 PDDLQELVHSLSYVYQRSTTAI 477
D+LQ L L Y Y + T ++
Sbjct: 518 ADELQTLKKKLCYNYAKGTRSV 583
Score = 72.1 bits (151), Expect(3) = 3e-040
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = -1 / +2
Query: 875 RKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
+KP ++I ++DGVSE QF QVL EL I +AC L+ + P T ++ QK HHT+ F
Sbjct: 161 QKPQRIIFYKDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 334
Score = 30.9 bits (61), Expect(3) = 3e-040
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1 / +2
Query: 1022 WPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQ 861
WP ++KY + Q+ + E+I FK + G + +I S KR Q
Sbjct: 2 WPEVTKYAGLISAQAHRQELIQDPFKVWQDPQRGTVTGGMIKELLISFKRATGQ 163
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 131 bits (281), Expect(2) = 4e-040
Identities = 49/85 (57%), Positives = 63/85 (74%)
Frame = -1 / +1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F+ D++Q L ++
Sbjct: 193 KSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEMQTLTNN 372
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L Y Y R T ++SVV P YAHLAA
Sbjct: 373 LCYTYARCTRSVSVVPPAYYAHLAA 447
Score = 53.8 bits (111), Expect(2) = 4e-040
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -1 / +2
Query: 842 GVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHT 711
GVSE QF QVL EL I +AC L+ + P T ++ QK HHT
Sbjct: 17 GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHT 148
>gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K21
3-PRIME, mRNA sequence
Length = 584
Score = 128 bits (275), Expect(2) = 1e-038
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = -1 / -3
Query: 578 HYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
HYHILHDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 582 HYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 406
Score = 101 bits (215), Expect(2) = 1e-029
Identities = 39/66 (59%), Positives = 54/66 (81%)
Frame = +3 / +1
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 385 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 564
Query: 561 MQDVIV 578
MQD+++
Sbjct: 565 MQDMVM 582
Score = 93.2 bits (197), Expect(2) = 4e-024
Identities = 41/65 (63%), Positives = 45/65 (69%)
Frame = +1 / +2
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 380 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 559
Query: 556 SSCRM 570
SSCR+
Sbjct: 560 SSCRI 574
Score = 51.9 bits (107), Expect(2) = 1e-038
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -3
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 354 PVQELPRLHEKVRSSMFFC*A 292
Score = 48.7 bits (100), Expect(2) = 1e-029
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +2
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 275 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 382
Score = 38.6 bits (78), Expect(2) = 4e-024
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +1
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 295 SAEEHAAADFLMETRQLLHRAAGSRGV 375
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 118 bits (252), Expect(2) = 4e-036
Identities = 43/82 (52%), Positives = 56/82 (68%)
Frame = -1 / +2
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
NV GTVVD ++CHP FDF++CSHAG+ GT+RP HYH+L D+ F+ DDLQ L ++L Y
Sbjct: 278 NVMPGTVVDRQICHPTEFDFFLCSHAGIKGTSRPAHYHVLRDDNNFSADDLQSLTNNLCY 457
Query: 503 VYQRSTTAISVVAPICYAHLAA 438
Y T ++S P YAH A
Sbjct: 458 TYASCTRSVSTAPPAYYAHKLA 523
Score = 53.8 bits (111), Expect(2) = 4e-036
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = -1 / +2
Query: 917 IRECLIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTL 738
I + L+ + K KP Q+I +RDGVSE QF VL E+ +I +A K L P +
Sbjct: 32 IAKKLLLSFEQHSKHKPQQLIFYRDGVSEGQFRMVLENEIPEIEKAWKALYNVKPPITFI 211
Query: 737 IIAQKNHHTKFFIPGK 690
++ +++H F GK
Sbjct: 212 VVQKRHHTRLFPSDGK 259
>gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. vulgare cDNA clone HA10I02
3-PRIME, mRNA sequence
Length = 514
Score = 118 bits (252), Expect(2) = 1e-035
Identities = 50/56 (89%), Positives = 52/56 (92%)
Frame = -1 / -3
Query: 569 ILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
ILHDEI F DDLQ+LVHSLSYVYQRSTTAISVV+PICYAHLAAAQV QFIKFDEM
Sbjct: 512 ILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHLAAAQVAQFIKFDEM 345
Score = 99.1 bits (210), Expect(2) = 7e-029
Identities = 39/63 (61%), Positives = 51/63 (80%)
Frame = +3 / +3
Query: 381 MAR*SLRHLVELYELPNLGGCKVGVADGSNN*YGCCAPLVHVRERVHQLLQVIRIEAYLV 560
+AR L HL++LYEL +L CK+ +AD NN*Y CCAPLVH+RER+H++LQVIR + YL+
Sbjct: 324 LARRRLGHLIKLYELRHLSSCKMCIADWRNN*YCCCAPLVHIRERMHKILQVIRGKVYLI 503
Query: 561 MQD 569
MQD
Sbjct: 504 MQD 512
Score = 93.2 bits (197), Expect(2) = 4e-024
Identities = 41/65 (63%), Positives = 45/65 (69%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLD+VSDISSNFMNC T AAAR A*Q+G TTD+AVVLLWY K I
Sbjct: 319 PPWLDDVSDISSNFMNCAT*AAARCA*QIGETTDIAVVLLWYT*ESECTRSCRSSAAKCI 498
Query: 556 SSCRM 570
SSCR+
Sbjct: 499 SSCRI 513
Score = 51.9 bits (107), Expect(2) = 1e-035
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1 / -3
Query: 353 PVQELPRLHEKVRSSMFFC*A 291
PVQELPRLHEKVRSSMFFC*A
Sbjct: 293 PVQELPRLHEKVRSSMFFC*A 231
Score = 48.7 bits (100), Expect(2) = 7e-029
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1 / +1
Query: 274 RDTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
R + +AQQKNM L TFS RRGSS TG L EV PP
Sbjct: 214 RASATSAQQKNMLLRTFSWRRGSSCTGPLAVEVWPP 321
Score = 38.6 bits (78), Expect(2) = 4e-024
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 294 SAEEHGAPHFLMQTGQLLDRDAARRGM 374
SAEEH A FLM+T QLL R A RG+
Sbjct: 234 SAEEHAAADFLMETRQLLHRAAGSRGV 314
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 131 bits (281), Expect(2) = 9e-032
Identities = 51/105 (48%), Positives = 70/105 (66%)
Frame = -1 / +1
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 49 NNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 228
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 408
D+LQ L ++L Y Y R T ++S+V P YAHLAA + +++ D
Sbjct: 229 ADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPD 363
Score = 25.8 bits (50), Expect(2) = 9e-032
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1 / +1
Query: 743 TLIIAQKNHHTKFF 702
T ++ QK HHT+ F
Sbjct: 4 TFVVVQKRHHTRLF 45
>gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. vulgare cDNA clone HX01H11
3-PRIME, mRNA sequence
Length = 669
Score = 108 bits (230), Expect(2) = 4e-031
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = -1 / -2
Query: 563 HDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
HDEIGF+ D+LQE VHSLSYVYQRSTTAISV API YAHLAAAQVG F+KF++M
Sbjct: 668 HDEIGFSADELQEFVHSLSYVYQRSTTAISVAAPIAYAHLAAAQVGTFMKFEDM 507
Score = 88.1 bits (186), Expect(2) = 1e-027
Identities = 38/63 (60%), Positives = 42/63 (66%)
Frame = +1 / +1
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPI 555
PPWLDEVSD+SSNFM PT AAAR A +GA T++AVVLLWY LKPI
Sbjct: 481 PPWLDEVSDMSSNFMKVPTCAAARCAYAIGAATEIAVVLLWYT*ESEWTNSWSSSALKPI 660
Query: 556 SSC 564
SSC
Sbjct: 661 SSC 669
Score = 55.6 bits (115), Expect(2) = 1e-027
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +1 / +1
Query: 277 DTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
D A QQKNMELLTFSC RGSS T LP +V PP
Sbjct: 379 DNSRAHQQKNMELLTFSCSRGSSGTEALPTDVWPP 483
Score = 46.9 bits (96), Expect(2) = 4e-031
Identities = 21/34 (61%), Positives = 22/34 (64%)
Frame = -2 / -3
Query: 379 GGIPRRAASLSRSCPVCMRK*GAPCSSAEQQGMC 278
G R AA RSC CMRK*GAPCSSA+ G C
Sbjct: 481 GATRRWAAPRCRSCLGCMRK*GAPCSSADGLGCC 380
>gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0086A12f, mRNA sequence
Length = 841
Score = 66.1 bits (138), Expect(3) = 3e-022
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +1 / -1
Query: 943 GLNNESIISIFGDWVRTDALYFEIRGHSRELTTAATDXTS 1062
GLNNE+IIS GD V TDALY E+RGHSRELTTAA + S
Sbjct: 478 GLNNEAIISCLGD*VCTDALYLEMRGHSRELTTAAMEGLS 359
Score = 60.6 bits (126), Expect(4) = 7e-030
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = -1 / +3
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRE 936
REWPLISKYRASV TQSPK EM+ SLF P E
Sbjct: 393 REWPLISKYRASVHTQSPKHEMMASLFNPGE 485
Score = 54.7 bits (113), Expect(4) = 7e-030
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -1 / +3
Query: 881 GKRKPDQVIIFRDGVSESQFNQVLNIEL 798
G RKP+QVIIFRDGVSE+ F QV+NIEL
Sbjct: 540 GSRKPNQVIIFRDGVSENPFTQVINIEL 623
Score = 51.0 bits (105), Expect(3) = 3e-022
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / -1
Query: 793 CCNSMFSTWLN*LSLTPSLKMMTWSGFLFP 882
C +SMF TW+N SLTPSLK++TW GF P
Sbjct: 628 CPSSMFITWVNGFSLTPSLKIITWFGFRLP 539
Score = 44.6 bits (91), Expect(4) = 7e-030
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -1 / +2
Query: 944 PRETDDDGLIRECLIDFYTSSGK 876
PR T+DDGLIRE LIDF T+SGK
Sbjct: 476 PRGTEDDGLIRESLIDFSTTSGK 544
Score = 26.3 bits (51), Expect(4) = 7e-030
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1 / +3
Query: 755 NPKFTLIIAQKNHHTKFFIPGKPDNVPA 672
NP ++A KN KFF P++VP+
Sbjct: 669 NPSSQSLLA*KNPSPKFFHTNFPEHVPS 752
Score = 25.8 bits (50), Expect(3) = 3e-022
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3 / -1
Query: 876 LP*TGVEVNQTLPNQTIVISFPWL 947
LP + EVN+ PN+ I+ S P L
Sbjct: 544 LPRSSGEVNK*FPNEAIIFSSPGL 473
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 129 bits (277), Expect = 2e-029
Identities = 49/92 (53%), Positives = 66/92 (71%)
Frame = -1 / -3
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D+LQ L ++L Y
Sbjct: 559 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 380
Query: 503 VYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 408
Y R T ++S+V P YAHLAA + +++ D
Sbjct: 379 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPD 284
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 129 bits (277), Expect = 2e-029
Identities = 49/92 (53%), Positives = 66/92 (71%)
Frame = -1 / -2
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D+LQ L ++L Y
Sbjct: 608 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCY 429
Query: 503 VYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 408
Y R T ++S+V P YAHLAA + +++ D
Sbjct: 428 TYARCTRSVSIVPPAYYAHLAAFRARFYMEPD 333
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 127 bits (272), Expect = 1e-028
Identities = 48/88 (54%), Positives = 64/88 (72%)
Frame = -1 / -3
Query: 671 GTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQR 492
GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D+LQ L ++L Y Y R
Sbjct: 591 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYAR 412
Query: 491 STTAISVVAPICYAHLAAAQVGQFIKFD 408
T ++S+V P YAHLAA + +++ D
Sbjct: 411 CTRSVSIVPPAYYAHLAAFRARFYMEPD 328
>gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 3', mRNA sequence
Length = 589
Score = 76.2 bits (160), Expect(3) = 7e-028
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = -1 / -2
Query: 596 GTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
GT+RP HYH+L DE F+ D++Q L ++L Y Y R T ++SVV P YAHLAA
Sbjct: 501 GTSRPAHYHVLWDENNFSADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAA 343
Score = 59.7 bits (124), Expect(3) = 7e-028
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -1 / -1
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIG 594
N+ GTVVD+K+CHP FDFY+CSHAG+ G
Sbjct: 589 NILPGTVVDSKICHPTEFDFYLCSHAGIPG 500
Score = 26.3 bits (51), Expect(3) = 7e-028
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1 / -2
Query: 350 VQELPRLHEKVRSSMFFC* 294
V+ LP + EKV+ MF+C*
Sbjct: 261 VKPLPAVKEKVKRVMFYC* 205
>gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
3-PRIME, mRNA sequence
Length = 623
Score = 95.0 bits (201), Expect(2) = 4e-027
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -1 / -2
Query: 548 FNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
F+ D+LQE VHSLSYVYQRSTTAISV API YAHLAAAQVG F+KF++M
Sbjct: 622 FSADELQEFVHSLSYVYQRSTTAISVAAPIAYAHLAAAQVGTFMKFEDM 476
Score = 76.2 bits (160), Expect(2) = 4e-024
Identities = 31/42 (73%), Positives = 35/42 (83%)
Frame = +1 / +3
Query: 376 PPWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWY 501
PPWLDEVSD+SSNFM PT AAAR A +GA T++AVVLLWY
Sbjct: 450 PPWLDEVSDMSSNFMKVPTCAAARCAYAIGAATEIAVVLLWY 575
Score = 55.6 bits (115), Expect(2) = 4e-024
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +1 / +3
Query: 277 DTFPAAQQKNMELLTFSCRRGSSWTGTLPAEVCPP 381
D A QQKNMELLTFSC RGSS T LP +V PP
Sbjct: 348 DNSRAHQQKNMELLTFSCSRGSSGTEALPTDVWPP 452
Score = 46.9 bits (96), Expect(2) = 4e-027
Identities = 21/34 (61%), Positives = 22/34 (64%)
Frame = -2 / -3
Query: 379 GGIPRRAASLSRSCPVCMRK*GAPCSSAEQQGMC 278
G R AA RSC CMRK*GAPCSSA+ G C
Sbjct: 450 GATRRWAAPRCRSCLGCMRK*GAPCSSADGLGCC 349
>gb|BE196054.2|BE196054 HVSMEh0091D21f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091D21f, mRNA sequence
Length = 914
Score = 76.2 bits (160), Expect(3) = 1e-025
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = -1 / +1
Query: 875 RKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
+KP ++I +RDGVSE QF QVL EL I +AC L+ + P T ++ QK HHTK F
Sbjct: 226 QKPQRIIFYRDGVSEGQFYQVLRYELDAIRKACASLEPNYQPPVTFVVVQKRHHTKLF 399
Score = 42.8 bits (87), Expect(3) = 1e-025
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1 / +1
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHA 606
N+H + N+ GT +K+ HP FDFY+CSHA
Sbjct: 403 NNHNDQRTGDRSGNILPGTGGGSKIWHPNEFDFYLCSHA 519
Score = 35.9 bits (72), Expect(3) = 1e-025
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKRKPDQ 861
++WP ++KY V Q+ + E+I LFK + G + +I S KR Q
Sbjct: 61 QDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPQRGTVTGGMIKELLISFKRATGQ 228
>gb|BG415324.2|BG415324 HVSMEk0006A22f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006A22f, mRNA sequence
Length = 639
Score = 115 bits (245), Expect = 6e-025
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = -1 / +2
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K NV GTVVD ++ P +DFY+CSH G+IGT+RPTHY+ L DE G+ DDLQ LV++
Sbjct: 2 KNGNVLPGTVVDTRIVDPVTYDFYLCSHNGLIGTSRPTHYYNLMDEHGYGSDDLQRLVYN 181
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L +V+ R T +S+ P+ YA LAA
Sbjct: 182 LCFVFARCTKPVSLATPVYYADLAA 256
>gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. vulgare cDNA clone HB25M17
5-PRIME, mRNA sequence
Length = 506
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 42/68 (61%), Positives = 51/68 (75%)
Frame = -1 / +1
Query: 641 PRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAP 462
P FDFY+CSHAG+ GT+RPTHYH+L DE GF D LQ+L ++L Y Y R T ++SVV P
Sbjct: 13 PTEFDFYLCSHAGIQGTSRPTHYHVLFDENGFTADGLQQLTNNLCYTYARCTRSVSVVPP 192
Query: 461 ICYAHLAA 438
YAHLAA
Sbjct: 193 AYYAHLAA 216
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 341 LPRLHEKVRSSMFFC* 294
LPR+ + V+ MF+C*
Sbjct: 343 LPRIRDNVKEVMFYC* 390
>gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l05 3', mRNA sequence
Length = 673
Score = 111 bits (238), Expect = 5e-024
Identities = 42/80 (52%), Positives = 56/80 (70%)
Frame = -1 / -3
Query: 647 CHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVV 468
CHP FDFY+CSHAG+ GT+RP HYH+L DE F D+LQ L ++L Y Y R T ++S+V
Sbjct: 671 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIV 492
Query: 467 APICYAHLAAAQVGQFIKFD 408
P YAHLAA + +++ D
Sbjct: 491 PPAYYAHLAAFRARFYMEPD 432
>gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB19G05
5-PRIME, mRNA sequence
Length = 644
Score = 109 bits (233), Expect = 3e-023
Identities = 42/49 (85%), Positives = 48/49 (97%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSS 882
REWPL+SKYRASVR+QSPK+EMIDSLFKP+ T+DDGL+RECLIDFYTSS
Sbjct: 496 REWPLVSKYRASVRSQSPKLEMIDSLFKPQGTEDDGLVRECLIDFYTSS 642
>gb|CB859263.1|CB859263 HI09O13w HI Hordeum vulgare subsp. vulgare cDNA clone HI09O13
3-PRIME, mRNA sequence
Length = 544
Score = 108 bits (231), Expect(2) = 3e-023
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = -1 / -2
Query: 668 TVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRS 489
TVVD ++ P +DFY+CSH G+IGT+RPTHY+ L DE G+ DDLQ LV++L +V+ R
Sbjct: 543 TVVDTRIVDPVTYDFYLCSHNGLIGTSRPTHYYNLMDEHGYGSDDLQRLVYNLCFVFARC 364
Query: 488 TTAISVVAPICYAHLAA 438
T +S+ P+ YA LAA
Sbjct: 363 TKPVSLATPVYYADLAA 313
Score = 22.6 bits (43), Expect(2) = 3e-023
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -3 / -1
Query: 225 VPASGRT*PGCRMLNGRIFKHRCSCAGWHAATIL 124
+P + R G +L+ HRC A W T +
Sbjct: 205 LPDAARGSSGQHVLHLTPASHRCRLASWSGRTYI 104
>gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
5-PRIME, mRNA sequence
Length = 556
Score = 107 bits (228), Expect = 1e-022
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = -1 / +2
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLIDFYTSSGKR 873
REWPLISKYRA+V TQSPK EM+ SLFKPR T+DDGLIRE LIDFYTSSGKR
Sbjct: 401 REWPLISKYRATVHTQSPKQEMMASLFKPRGTEDDGLIRESLIDFYTSSGKR 556
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 549,496,085
Number of Sequences: 312970
Number of extensions: 9602447
Number of successful extensions: 71126
Number of sequences better than 1.0e-020: 67
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12883744134
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)