TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedl... 212 e-111
gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. v... 335 3e-091
gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA li... 183 2e-090
gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Libr... 148 9e-089
gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. v... 174 2e-088
gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. v... 174 2e-076
gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. v... 213 2e-070
gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. v... 174 8e-069
gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA,... 178 8e-065
gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA li... 174 8e-062
gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA li... 209 2e-053
gb|CA000191.1|CA000191 HS09J09u HS Hordeum vulgare subsp. v... 209 3e-053
gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. v... 205 3e-052
gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green... 171 2e-049
gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, dro... 193 2e-048
gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. v... 174 8e-046
gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA li... 183 2e-045
gb|CA013755.1|CA013755 HT09G07r HT Hordeum vulgare subsp. v... 177 1e-043
gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA li... 174 7e-043
gb|AJ462109.1|AJ462109 AJ462109 S00002 Hordeum vulgare subs... 161 7e-039
gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare s... 142 4e-033
gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no... 66 6e-030
gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA li... 68 2e-029
gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA li... 68 2e-029
gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DA... 68 2e-029
gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no... 66 2e-027
gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA li... 68 1e-025
gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. v... 68 4e-024
gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachi... 68 6e-024
gb|CA001439.1|CA001439 HS17O15u HS Hordeum vulgare subsp. v... 111 8e-024
gb|CA010057.1|CA010057 HT11K20u HT Hordeum vulgare subsp. v... 111 8e-024
gb|BJ462342.1|BJ462342 BJ462342 K. Sato unpublished cDNA li... 69 3e-023
gb|BJ466593.1|BJ466593 BJ466593 K. Sato unpublished cDNA li... 69 3e-023
gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, ... 68 4e-023
gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. v... 68 4e-023
gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA li... 107 1e-022
gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA li... 107 1e-022
gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. v... 106 2e-022
gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed D... 106 2e-022
gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA li... 68 3e-022
>gb|BE558753.3|BE558753 HV_CEb0020E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E08f, mRNA sequence
Length = 790
Score = 212 bits (457), Expect(2) = e-111
Identities = 83/97 (85%), Positives = 90/97 (92%)
Frame = +3 / +1
Query: 285 NSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAEREL 464
+S+IGCE YNLGTG+GTSVLEIV AFEKASGKKIPL+ G+RRPGDAEILF+ T KAEREL
Sbjct: 280 SSNIGCEPYNLGTGKGTSVLEIVNAFEKASGKKIPLVVGQRRPGDAEILFAGTGKAEREL 459
Query: 465 NWKAKYGIEEMCRDQWNWASKNPYGYGSPDSIKQNGH 575
NWKAKYGI EMCRDQWNWASKNPYGYGSPDS KQNG+
Sbjct: 460 NWKAKYGITEMCRDQWNWASKNPYGYGSPDSTKQNGN 570
Score = 210 bits (452), Expect(2) = e-111
Identities = 80/95 (84%), Positives = 93/95 (97%)
Frame = +3 / +1
Query: 9 RDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGN 188
RDIYRSD EW+IILLRYFNPVGAHPSGYLGEDPRG+PNNLMP+VQQVAVGRRP++T+ GN
Sbjct: 1 RDIYRSDSEWRIILLRYFNPVGAHPSGYLGEDPRGVPNNLMPFVQQVAVGRRPSVTIFGN 180
Query: 189 DYATRDGTGVRDYIHVVDLADGHIAALQKLFENSS 293
+YAT+DGTGVRDYIHV+DLA+GHIAAL+KLF++SS
Sbjct: 181 NYATKDGTGVRDYIHVLDLAEGHIAALRKLFDSSS 285
Score = 181 bits (390), Expect(2) = 3e-088
Identities = 76/95 (80%), Positives = 80/95 (84%)
Frame = -2 / -3
Query: 571 PFCLIESGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKI 392
PFCL+ESGDP P*GFLLAQFHWS HIS +PYFAFQLSSLSAL V RISASPGR P
Sbjct: 566 PFCLVESGDPYP*GFLLAQFHWSLHISVMPYFAFQLSSLSALPVPAKRISASPGRR*PTT 387
Query: 391 RGIFFPEAFSNALTISSTDVPLPVPRLYASHPMLE 287
GIFFPEAFSNA TIS+TDVP PVPRLY SHPML+
Sbjct: 386 SGIFFPEAFSNAFTISNTDVPFPVPRLYGSHPMLD 282
Score = 165 bits (354), Expect(2) = 3e-088
Identities = 76/93 (81%), Positives = 80/93 (86%)
Frame = -2 / -3
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E SKSF +AAICPSARS+T +*SRTPVPSLVA* FPK V GLLPTATC*T GIRL G P
Sbjct: 281 ELSKSFRSAAICPSARSST*I*SRTPVPSLVA*LFPKIVTDGLLPTATC*TKGIRLFGTP 102
Query: 109 RGSSPRYPLG*APTGLKYLSKMIFHSGSER*IS 11
RGSSPRYPLG*APTGLKYLSKMI HS S+R IS
Sbjct: 101 RGSSPRYPLG*APTGLKYLSKMILHSESDRYIS 3
Score = 128 bits (275), Expect(2) = 5e-057
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -1 / -2
Query: 290 RVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNS 111
R +KKL CSNM +SK+ HM++IS PSP+ CIVIS +C PP N NLLN GHK+V NS
Sbjct: 282 RTIKKLP*CSNMPLSKIKHMNIISYPSPIFSCIVISKDCH*RPPPNSNLLNEGHKVVWNS 103
Query: 110 SWVLAKISTRMSTNWIEVPK*NDLPFRI*TVDI 12
+WV K+ST +S N +E+PK*ND P RI* V I
Sbjct: 102 TWVFTKVSTGVSPNRVEIPK*NDPPLRI*PVYI 4
Score = 113 bits (241), Expect(2) = 5e-057
Identities = 52/96 (54%), Positives = 64/96 (66%)
Frame = -1 / -2
Query: 575 VTILLDRVR*SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTK 396
+ +LL RV * + +RVLA PVPLV AHL + + CFPV+ LCF+S K+NL +T A T
Sbjct: 570 IAVLLGRVG*PVPVRVLASPVPLVPAHLRDAILCFPVEFSLCFTSSCKENLRVTRAALTD 391
Query: 395 NQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYAR 288
+QR FL RSLL+C LQH S SKVV FT Y R
Sbjct: 390 DQRDFLSRSLLECIYYLQH*RPFSSSKVVWFTSYVR 283
Score = 104 bits (222), Expect(2) = 9e-043
Identities = 54/90 (60%), Positives = 60/90 (66%)
Frame = +1 / +2
Query: 13 ISTVQILNGRSFYLGTSIQLVLILVDILARTHEEFPTILCPMFSKLRLVGGQL*QF*EMT 192
I T QIL+G SFYLG S +L L VD L +TH EF T LCP FSKL L GG+ *Q E+T
Sbjct: 5 IYTGQILSGGSFYLGISTRLGLTPVDTLVKTHVEFQTTLCPSFSKLLLGGGRQ*QSLEIT 184
Query: 193 MQQETGLGSEITSMWLTLLTDILLHCRSFL 282
MQ + GLG EI M L LL ILLH SFL
Sbjct: 185 MQLKMGLGYEIIFMCLILLRGILLHYGSFL 274
Score = 101 bits (215), Expect(3) = 5e-024
Identities = 54/90 (60%), Positives = 59/90 (65%)
Frame = -3 / -1
Query: 282 QKASAMQQYVRQQGQPHGCNLGPQSRLLLHSHFLKLSELASYQPQLAEHRA*DCWEFLVG 103
QKAS +QQY QQ Q H NL PQS L LHS+F +LS AS Q QLAE RA* C E VG
Sbjct: 274 QKASVVQQYAPQQDQAHEYNLVPQSHL*LHSYFQRLSLTASSQQQLAERRA*GCLELHVG 95
Query: 102 PRQDIH*DEHQLD*ST*VK*SSIQDLNGRY 13
Q IH E Q *+T*VK*SS Q+L G Y
Sbjct: 94 LHQGIHWGEPQPG*NT*VK*SSTQNLTGIY 5
Score = 90.0 bits (190), Expect(2) = 9e-043
Identities = 47/94 (50%), Positives = 62/94 (65%)
Frame = +2 / +3
Query: 287 L*HRV*SVQPWNRKRYICAGDC*SI*EGFWEENTSDFW*KAPR*CRDSVFRDY*SREGA* 466
+*HR+*++QPWN KR + GD I EGFW+EN + P * DS+ R++*SRE
Sbjct: 282 V*HRM*TIQPWNWKRDVSVGDSKCIREGFWKENPAGRRSAPPW*RGDSLCRNW*SRERTQ 461
Query: 467 LESKIRY*RDVPRPMELGQQEPLWLWIT*LYQAE 568
LESK+ + DV P+ELG QEPL + +T L QAE
Sbjct: 462 LESKVWHHGDVQGPVELG*QEPLRVRVTRLDQAE 563
Score = 86.8 bits (183), Expect(3) = 3e-033
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = +2 / +3
Query: 104 PTRNSQQSYALCSASCGW*EASSDSFRK*LCNKRRDWGPRLHPCG*PC*RTYCCIAEAF* 283
PT +S+Q YAL SASC W EA SD+ K*LCN R DWG RL+ C * C* YCC EAF*
Sbjct: 96 PTWSSKQPYALRSASCCWEEAVSDNLWK*LCN*RWDWGTRLYSCA*SC*GAYCCTTEAF* 275
Score = 63.4 bits (132), Expect(3) = 3e-033
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = +1 / +2
Query: 400 VKGAQVMQRFCFQRLLKQRGSLTGKQNTVLKRCAATNGTGPARTLMAMDHLTLSSR 567
V A V +RF Q L+KQR + TGKQ+ +RCA T+GTG ARTL H T SR
Sbjct: 395 VSAALVTRRFSLQELVKQRENSTGKQSMASRRCAGTSGTGLARTLTGTGHPTRPSR 562
Score = 30.4 bits (60), Expect(3) = 3e-033
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2 / +3
Query: 14 YLPFRS*MEDHFT*VLQ 64
Y+P R *+EDHFT*V Q
Sbjct: 6 YIPVRF*VEDHFT*VFQ 56
Score = 27.2 bits (53), Expect(3) = 5e-024
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3 / -1
Query: 555 SQVIHSHKGSCWPSSIGRGTS 493
S+V + KGSC PSS G TS
Sbjct: 550 SRVTRTRKGSC*PSSTGPCTS 488
Score = 25.4 bits (49), Expect(3) = 5e-024
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2 / -3
Query: 613 PFCLEESADPF 581
PFCL ES DP+
Sbjct: 566 PFCLVESGDPY 534
>gb|CA013080.1|CA013080 HT07F09r HT Hordeum vulgare subsp. vulgare cDNA clone HT07F09
5-PRIME, mRNA sequence
Length = 637
Score = 335 bits (726), Expect = 3e-091
Identities = 129/173 (74%), Positives = 149/173 (86%)
Frame = +3 / +1
Query: 24 SDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATR 203
++PEW+ ILLRYFNP+GAH SG +GEDP+G+PNNL+PY+QQVAVGRRP L V G+DY TR
Sbjct: 28 ANPEWRTILLRYFNPIGAHQSGDIGEDPKGVPNNLLPYIQQVAVGRRPELNVYGHDYRTR 207
Query: 204 DGTGVRDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKK 383
DGT VRDYIHVVDLADGHIAAL+KLF IGC AYNLGTGRGT+VLE+V AFEKA GKK
Sbjct: 208 DGTAVRDYIHVVDLADGHIAALEKLFATPDIGCVAYNLGTGRGTTVLEMVSAFEKAYGKK 387
Query: 384 IPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
IP+ RRPGD+E +++ T KAE+EL W+AKYGIEEMCRDQWNWA KNPYGY
Sbjct: 388 IPVKMCPRRPGDSEQVYASTAKAEQELGWRAKYGIEEMCRDQWNWARKNPYGY 546
Score = 228 bits (493), Expect = 4e-059
Identities = 110/171 (64%), Positives = 120/171 (70%)
Frame = -2 / -3
Query: 541 *P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFS 362
*P GF LAQFHWS HISSIPY A Q SS SAL V S SPG L GIF P AFS
Sbjct: 545 *PYGFFLAQFHWSLHISSIPYLALQPSSCSALAVDAYTCSESPGLLGHIFTGIFLPYAFS 366
Query: 361 NALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFP 182
NALTISST VP PVPRLYA+ PM +KSF +AA+ PSARSTTWM*S T VPS V *S+P
Sbjct: 365 NALTISSTVVPRPVPRLYATQPMSGVAKSFSSAAMWPSARSTTWM*SLTAVPSRVR*SWP 186
Query: 181 KTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKMIFHSG 29
T+ +G PTATC *G RLLG P GSSP PL AP GLK S+++ HSG
Sbjct: 185 *TLSSGRRPTATCWM*GSRLLGTPLGSSPMSPLWWAPMGLK*RSRIVLHSG 33
>gb|BJ463662.1|BJ463662 BJ463662 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 5', mRNA sequence
Length = 540
Score = 183 bits (394), Expect(2) = 2e-090
Identities = 70/83 (84%), Positives = 82/83 (98%)
Frame = +3 / +1
Query: 45 ILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGVRD 224
ILLRYFNPVGAHPSGYLGEDPRG+PNNLMP+VQQVAVGRRP++T+ GN+YAT+DGTGVRD
Sbjct: 61 ILLRYFNPVGAHPSGYLGEDPRGVPNNLMPFVQQVAVGRRPSVTIFGNNYATKDGTGVRD 240
Query: 225 YIHVVDLADGHIAALQKLFENSS 293
YIHV+DLA+GHIAAL+KLF++SS
Sbjct: 241 YIHVLDLAEGHIAALRKLFDSSS 309
Score = 170 bits (366), Expect(2) = 2e-090
Identities = 67/79 (84%), Positives = 73/79 (92%)
Frame = +3 / +1
Query: 285 NSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAEREL 464
+S+IGCE YNLGTG+GTSVLEIV AFEKASGKKIPL+ G+RRPGDAEILF+ T KAEREL
Sbjct: 304 SSNIGCEPYNLGTGKGTSVLEIVNAFEKASGKKIPLVVGQRRPGDAEILFAGTGKAEREL 483
Query: 465 NWKAKYGIEEMCRDQWNWA 521
NWKAKYGI EMCRDQWNWA
Sbjct: 484 NWKAKYGITEMCRDQWNWA 540
Score = 149 bits (321), Expect(2) = 1e-072
Identities = 68/82 (82%), Positives = 72/82 (87%)
Frame = -2 / -2
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E SKSF +AAICPSARS+T +*SRTPVPSLVA* FPK V GLLPTATC*T GIRL G P
Sbjct: 305 ELSKSFRSAAICPSARSST*I*SRTPVPSLVA*LFPKIVTDGLLPTATC*TKGIRLFGTP 126
Query: 109 RGSSPRYPLG*APTGLKYLSKM 44
RGSSPRYPLG*APTGLKYLSK+
Sbjct: 125 RGSSPRYPLG*APTGLKYLSKI 60
Score = 144 bits (309), Expect(2) = 1e-072
Identities = 61/78 (78%), Positives = 64/78 (82%)
Frame = -2 / -2
Query: 520 AQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFSNALTISS 341
AQFHWS HIS +PYFAFQLSSLSAL V RISASPGR P GIFFPEAFSNA TIS+
Sbjct: 539 AQFHWSLHISVMPYFAFQLSSLSALPVPAKRISASPGRR*PTTSGIFFPEAFSNAFTISN 360
Query: 340 TDVPLPVPRLYASHPMLE 287
TDVP PVPRLY SHPML+
Sbjct: 359 TDVPFPVPRLYGSHPMLD 306
Score = 118 bits (252), Expect(2) = 4e-048
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = -1 / -1
Query: 290 RVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNS 111
R +KKL CSNM +SK+ HM++IS PSP+ CIVIS +C PP N NLLN GHK+V NS
Sbjct: 306 RTIKKLP*CSNMPLSKIKHMNIISYPSPIFSCIVISKDCH*RPPPNSNLLNEGHKVVWNS 127
Query: 110 SWVLAKISTRMSTNWIEVPK*NDL 39
+WV K+ST +S N +E+PK*N L
Sbjct: 126 TWVFTKVSTGVSPNRVEIPK*NIL 55
Score = 94.1 bits (199), Expect(2) = 2e-035
Identities = 48/81 (59%), Positives = 53/81 (65%)
Frame = +1 / +2
Query: 40 RSFYLGTSIQLVLILVDILARTHEEFPTILCPMFSKLRLVGGQL*QF*EMTMQQETGLGS 219
R FYLG S +L L VD L +TH EF T LCP FSKL L GG+ *Q E+TMQ + GLG
Sbjct: 56 RIFYLGISTRLGLTPVDTLVKTHVEFQTTLCPSFSKLLLGGGRQ*QSLEITMQLKMGLGY 235
Query: 220 EITSMWLTLLTDILLHCRSFL 282
EI M L LL ILLH SFL
Sbjct: 236 EIIFMCLILLRGILLHYGSFL 298
Score = 94.1 bits (199), Expect(2) = 4e-048
Identities = 43/77 (55%), Positives = 51/77 (66%)
Frame = -1 / -1
Query: 518 PVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTKNQRYFLPRSLLKCFNNLQH 339
PVPLV AHL + + CFPV+ LCF+S K+NL +T A T +QR FL RSLL+C LQH
Sbjct: 537 PVPLVPAHLRDAILCFPVEFSLCFTSSCKENLRVTRAALTDDQRDFLSRSLLECIYYLQH 358
Query: 338 RCTSSGSKVVRFTPYAR 288
S SKVV FT Y R
Sbjct: 357 *RPFSSSKVVWFTSYVR 307
Score = 86.8 bits (183), Expect(2) = 1e-025
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = +2 / +3
Query: 104 PTRNSQQSYALCSASCGW*EASSDSFRK*LCNKRRDWGPRLHPCG*PC*RTYCCIAEAF* 283
PT +S+Q YAL SASC W EA SD+ K*LCN R DWG RL+ C * C* YCC EAF*
Sbjct: 120 PTWSSKQPYALRSASCCWEEAVSDNLWK*LCN*RWDWGTRLYSCA*SC*GAYCCTTEAF* 299
Score = 75.8 bits (159), Expect(2) = 2e-035
Identities = 38/78 (48%), Positives = 51/78 (65%)
Frame = +2 / +3
Query: 287 L*HRV*SVQPWNRKRYICAGDC*SI*EGFWEENTSDFW*KAPR*CRDSVFRDY*SREGA* 466
+*HR+*++QPWN KR + GD I EGFW+EN + P * DS+ R++*SRE
Sbjct: 306 V*HRM*TIQPWNWKRDVSVGDSKCIREGFWKENPAGRRSAPPW*RGDSLCRNW*SRERTQ 485
Query: 467 LESKIRY*RDVPRPMELG 520
LESK+ + DV P+ELG
Sbjct: 486 LESKVWHHGDVQGPVELG 539
Score = 50.6 bits (104), Expect(2) = 1e-025
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +1 / +2
Query: 400 VKGAQVMQRFCFQRLLKQRGSLTGKQNTVLKRCAATNGTG 519
V A V +RF Q L+KQR + TGKQ+ +RCA T+GTG
Sbjct: 419 VSAALVTRRFSLQELVKQRENSTGKQSMASRRCAGTSGTG 538
>gb|BE420919.1|BE420919 HWM003.H08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.H08, mRNA sequence
Length = 1212
Score = 148 bits (317), Expect(3) = 9e-089
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +3 / +2
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T KAE+E
Sbjct: 392 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAATAKAEKE 571
Query: 462 LNWKAKYGIEEMCRDQWNWASKNP 533
L WKAK+ +EEMCRD WN ASKNP
Sbjct: 572 LKWKAKFRLEEMCRDLWNLASKNP 643
Score = 131 bits (281), Expect(3) = 9e-089
Identities = 53/65 (81%), Positives = 59/65 (90%)
Frame = +3 / +2
Query: 96 GEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
G+ P G+PNNLMPYVQQVAVGRRPALTV G Y T+DGTGVRDYIHVVDLADGHIAAL+K
Sbjct: 203 GKTPFGVPNNLMPYVQQVAVGRRPALTVYGTHYNTKDGTGVRDYIHVVDLADGHIAALRK 382
Query: 276 LFENS 290
L+E+S
Sbjct: 383 LYEDS 397
Score = 122 bits (261), Expect(3) = 4e-065
Identities = 56/84 (66%), Positives = 61/84 (72%)
Frame = -2 / -1
Query: 532 GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFSNAL 353
GFLLA+FH S HISS AF LSS SAL V+ +SASP L RGIFFP+AFSNA
Sbjct: 642 GFLLAKFHRSLHISSSRNLAFHLSSFSALAVAAYTVSASPALLPA*TRGIFFPQAFSNAA 463
Query: 352 TISSTDVPLPVPRLYASHPMLEFS 281
TISSTDVP PVPRLY SHP+L S
Sbjct: 462 TISSTDVPFPVPRLYTSHPILSES 391
Score = 99.6 bits (211), Expect(3) = 4e-065
Identities = 48/65 (73%), Positives = 50/65 (76%)
Frame = -2 / -1
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E S SF AA+ PSARSTTWM*SRTPVPSLV * P TV AG LPTATC T*GIRLLG P
Sbjct: 396 ESS*SFLKAAMWPSARSTTWM*SRTPVPSLVL*WVP*TVSAGRLPTATCWT*GIRLLGTP 217
Query: 109 RGSSP 95
+G P
Sbjct: 216 KGVFP 202
Score = 87.7 bits (185), Expect(3) = 9e-089
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = +3 / +1
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIP 119
ICRD+ RSDP+WKIILLRYFNPVGAHPSGY+GEDP P
Sbjct: 109 ICRDLQRSDPDWKIILLRYFNPVGAHPSGYIGEDPLRSP 225
Score = 72.5 bits (152), Expect(3) = 6e-026
Identities = 36/81 (44%), Positives = 50/81 (61%)
Frame = -1 / -3
Query: 533 RVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTKNQRYFLPRSLLKCF 354
RVLA VP V+AHL P++L LCF S +L I+ + + NQR FL SLL+C
Sbjct: 643 RVLACQVPQVSAHLLQPKLGLPLELLLCFGSGSVHSLGISSSSSSINQRDFLSASLLECG 464
Query: 353 NNLQHRCTSSGSKVVRFTPYA 291
N+LQH + S +++V F PY+
Sbjct: 463 NHLQHGRSLSSAQIVHFAPYS 401
Score = 66.1 bits (138), Expect(3) = 4e-065
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = -2 / -2
Query: 118 GIPRGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
G+ RGSSP PLG*APTGLKYLS MIF SGSER SRQ+
Sbjct: 224 GLRRGSSPM*PLG*APTGLKYLSSMIFQSGSERWRSRQM 108
Score = 42.3 bits (86), Expect(3) = 6e-026
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -1 / -1
Query: 134 GHKIVGNSSWVLAKISTRMSTNWIEVPK*NDLPFRI*TVDIPAN 3
G +++G V ++TR+S NW+EVP+ DLP + +++ A+
Sbjct: 240 GIRLLGTPKGVFPDVATRVSANWVEVPQQYDLPVGVRALEVTAD 109
Score = 40.9 bits (83), Expect(3) = 6e-026
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = -3 / -2
Query: 294 C*SSQKASAMQQYVRQQGQPHGCNLGPQSRLLLHSHFLKLSELASYQPQLAEHRA*DCW 118
C + ++AS+ + RQ GQ HGC+ P S K S A+ + +LA HRA CW
Sbjct: 401 CQNLRRASSRLRCGRQPGQQHGCSHVPLFHPWCCSGSRKPSAQAASRQRLAGHRASGCW 225
>gb|CA013313.1|CA013313 HT08A11r HT Hordeum vulgare subsp. vulgare cDNA clone HT08A11
5-PRIME, mRNA sequence
Length = 646
Score = 174 bits (375), Expect(3) = 2e-088
Identities = 65/92 (70%), Positives = 78/92 (84%)
Frame = +3 / +3
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T KAE+E
Sbjct: 279 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAATAKAEKE 458
Query: 462 LNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
L WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 459 LKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 554
Score = 168 bits (361), Expect(3) = 2e-088
Identities = 66/76 (86%), Positives = 72/76 (94%)
Frame = +3 / +3
Query: 63 NPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGVRDYIHVVD 242
NPVGAHPSGY+GEDP G+PNNLMPYVQQVAVGRRPALTV G DY T+DGTGVRDYIHVVD
Sbjct: 57 NPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYIHVVD 236
Query: 243 LADGHIAALQKLFENS 290
LADGHIAAL+KL+E+S
Sbjct: 237 LADGHIAALRKLYEDS 284
Score = 138 bits (297), Expect(2) = 3e-064
Identities = 63/89 (70%), Positives = 67/89 (75%)
Frame = -2 / -1
Query: 547 DP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEA 368
DP*P*GFLLAQFH S HISS P AF LSS SAL V+ +SASP L RGIFFP+A
Sbjct: 544 DP*P*GFLLAQFHRSLHISSTPNLAFHLSSFSALAVAAYTVSASPALLPA*TRGIFFPQA 365
Query: 367 FSNALTISSTDVPLPVPRLYASHPMLEFS 281
FSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 364 FSNAATISSTDVPFPVPRLYTSHPILSES 278
Score = 127 bits (272), Expect(2) = 3e-064
Identities = 61/76 (80%), Positives = 62/76 (81%)
Frame = -2 / -1
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E S SF AA+ PSARSTTWM*SRTPVPSLV *S P TV AG LPTATC T*GIRLLG P
Sbjct: 283 ESS*SFLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSAGRLPTATCWT*GIRLLGTP 104
Query: 109 RGSSPRYPLG*APTGL 62
RGSSP PLG*APTGL
Sbjct: 103 RGSSPM*PLG*APTGL 56
Score = 79.9 bits (168), Expect(2) = 3e-030
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = -1 / -3
Query: 545 SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTKNQRYFLPRSL 366
S+A+ VLA PVP V+AHL + P++L LCF S +L I+ + + NQR FL SL
Sbjct: 542 SVAVGVLACPVPQVSAHLLHPKLGLPLELLLCFGSGSVHSLGISSSSSSINQRDFLSASL 363
Query: 365 LKCFNNLQHRCTSSGSKVVRFTPYA 291
L+C N+LQH + S +++V F PY+
Sbjct: 362 LECGNHLQHGRSLSSAQIVHFAPYS 288
Score = 72.5 bits (152), Expect(2) = 3e-030
Identities = 30/77 (38%), Positives = 52/77 (67%)
Frame = -1 / -3
Query: 290 RVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNS 111
R+ +L Q +++VS+VN+MDV++ P + +V N Q PP + +LL+IGH++VG+S
Sbjct: 284 RIFVELPQGCDVAVSQVNNMDVVTYPCSILGVVVGPVNRQRRPPPDSDLLDIGHQVVGDS 105
Query: 110 SWVLAKISTRMSTNWIE 60
V ++TR+S NW++
Sbjct: 104 KGVFPDVATRVSANWVK 54
Score = 23.5 bits (45), Expect(3) = 2e-088
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 15 IYRSDPEWKI 44
+ RSDP+WKI
Sbjct: 11 LQRSDPDWKI 40
>gb|BU990717.1|BU990717 HF25N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF25N16
5-PRIME, mRNA sequence
Length = 633
Score = 174 bits (375), Expect(2) = 2e-076
Identities = 65/92 (70%), Positives = 78/92 (84%)
Frame = +3 / +3
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T KAE+E
Sbjct: 192 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAATAKAEKE 371
Query: 462 LNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
L WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 372 LKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 467
Score = 138 bits (297), Expect(2) = 7e-057
Identities = 63/89 (70%), Positives = 67/89 (75%)
Frame = -2 / -3
Query: 547 DP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEA 368
DP*P*GFLLAQFH S HISS P AF LSS SAL V+ +SASP L RGIFFP+A
Sbjct: 457 DP*P*GFLLAQFHRSLHISSTPNLAFHLSSFSALAVAAYTVSASPALLPA*TRGIFFPQA 278
Query: 367 FSNALTISSTDVPLPVPRLYASHPMLEFS 281
FSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 277 FSNAATISSTDVPFPVPRLYTSHPILSES 191
Score = 132 bits (283), Expect(2) = 2e-076
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3 / +3
Query: 105 PRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFE 284
P G+PNNLMPYVQQVAVGRRPALTV G DY T+DGTGVRDYIHVVDLADGHIAAL+KL+E
Sbjct: 12 PLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYIHVVDLADGHIAALRKLYE 191
Query: 285 NS 290
+S
Sbjct: 192 DS 197
Score = 102 bits (218), Expect(2) = 7e-057
Identities = 49/62 (79%), Positives = 50/62 (80%)
Frame = -2 / -3
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E S SF AA+ PSARSTTWM*SRTPVPSLV *S P TV AG LPTATC T*GIRLLG P
Sbjct: 196 ESS*SFLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSAGRLPTATCWT*GIRLLGTP 17
Query: 109 RG 104
RG
Sbjct: 16 RG 11
Score = 79.9 bits (168), Expect(2) = 9e-025
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = -1 / -2
Query: 545 SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTKNQRYFLPRSL 366
S+A+ VLA PVP V+AHL + P++L LCF S +L I+ + + NQR FL SL
Sbjct: 455 SVAVGVLACPVPQVSAHLLHPKLGLPLELLLCFGSGSVHSLGISSSSSSINQRDFLSASL 276
Query: 365 LKCFNNLQHRCTSSGSKVVRFTPYA 291
L+C N+LQH + S +++V F PY+
Sbjct: 275 LECGNHLQHGRSLSSAQIVHFAPYS 201
Score = 54.2 bits (112), Expect(2) = 9e-025
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = -1 / -2
Query: 290 RVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNS 111
R+ +L Q +++VS+VN+MDV++ P + +V N Q PP + +LL+IGH++VG+S
Sbjct: 197 RIFVELPQGCDVAVSQVNNMDVVTYPCSILGVVVGPVNRQRRPPPDSDLLDIGHQVVGDS 18
>gb|BU971800.1|BU971800 HB19L11r BC Hordeum vulgare subsp. vulgare cDNA clone HB19L11
5-PRIME, mRNA sequence
Length = 569
Score = 213 bits (460), Expect(2) = 2e-070
Identities = 83/96 (86%), Positives = 91/96 (94%)
Frame = +3 / +1
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
ICRD+ RSDP+WKIILLRYFNPVGAHPSGY+GEDP G+PNNLMPYVQQVAVGRRPALTV
Sbjct: 166 ICRDLQRSDPDWKIILLRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVY 345
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENS 290
G DY T+DGTGVRDYIHVVDLADGHIAAL+KL+E+S
Sbjct: 346 GTDYNTKDGTGVRDYIHVVDLADGHIAALRKLYEDS 453
Score = 158 bits (339), Expect(2) = 3e-054
Identities = 76/96 (79%), Positives = 78/96 (81%)
Frame = -2 / -1
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E S SF AA+ PSARSTTWM*SRTPVPSLV *S P TV AG LPTATC T*GIRLLG P
Sbjct: 452 ESS*SFLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSAGRLPTATCWT*GIRLLGTP 273
Query: 109 RGSSPRYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
RGSSP PLG*APTGLKYLS MIF SGSER SRQ+
Sbjct: 272 RGSSPM*PLG*APTGLKYLSSMIFQSGSERWRSRQM 165
Score = 87.7 bits (185), Expect(2) = 2e-024
Identities = 37/96 (38%), Positives = 64/96 (66%)
Frame = -1 / -3
Query: 290 RVLKKLLQCSNMSVSKVNHMDVISDPSPVSCCIVIS*NCQSWPPTNRNLLNIGHKIVGNS 111
R+ +L Q +++VS+VN+MDV++ P + +V N Q PP + +LL+IGH++VG+S
Sbjct: 453 RIFVELPQGCDVAVSQVNNMDVVTYPCSILGVVVGPVNRQRRPPPDSDLLDIGHQVVGDS 274
Query: 110 SWVLAKISTRMSTNWIEVPK*NDLPFRI*TVDIPAN 3
V ++TR+S NW+EVP+ DLP + +++ A+
Sbjct: 273 KGVFPDVATRVSANWVEVPQQYDLPVGVRALEVTAD 166
Score = 74.8 bits (157), Expect(2) = 3e-054
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -2 / -1
Query: 391 RGIFFPEAFSNALTISSTDVPLPVPRLYASHPMLEFS 281
RGIFFP+AFSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 557 RGIFFPQAFSNAATISSTDVPFPVPRLYTSHPILSES 447
Score = 73.5 bits (154), Expect(2) = 2e-070
Identities = 28/39 (71%), Positives = 34/39 (87%)
Frame = +3 / +1
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIF 398
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++
Sbjct: 448 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVY 564
Score = 45.1 bits (92), Expect(2) = 2e-024
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -1 / -3
Query: 395 NQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPYA 291
NQR FL SLL+C N+LQH + S +++V F PY+
Sbjct: 561 NQRDFLSASLLECGNHLQHGRSLSSAQIVHFAPYS 457
>gb|BU995681.1|BU995681 HM11A08r HM Hordeum vulgare subsp. vulgare cDNA clone HM11A08
5-PRIME, mRNA sequence
Length = 642
Score = 174 bits (375), Expect(3) = 8e-069
Identities = 65/92 (70%), Positives = 78/92 (84%)
Frame = +3 / +3
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T KAE+E
Sbjct: 186 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAATAKAEKE 365
Query: 462 LNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
L WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 366 LKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 461
Score = 138 bits (297), Expect(2) = 3e-050
Identities = 63/89 (70%), Positives = 67/89 (75%)
Frame = -2 / -3
Query: 547 DP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEA 368
DP*P*GFLLAQFH S HISS P AF LSS SAL V+ +SASP L RGIFFP+A
Sbjct: 451 DP*P*GFLLAQFHRSLHISSTPNLAFHLSSFSALAVAAYTVSASPALLPA*TRGIFFPQA 272
Query: 367 FSNALTISSTDVPLPVPRLYASHPMLEFS 281
FSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 271 FSNAATISSTDVPFPVPRLYTSHPILSES 185
Score = 102 bits (218), Expect(3) = 8e-069
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +3 / +3
Query: 144 QVAVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENS 290
QVAVGRRPALTV G DY T+DGTGVRDYIHVVDLADGHIAAL+KL+E+S
Sbjct: 45 QVAVGRRPALTVYGTDYNTKDGTGVRDYIHVVDLADGHIAALRKLYEDS 191
Score = 80.8 bits (170), Expect(2) = 3e-050
Identities = 38/49 (77%), Positives = 39/49 (79%)
Frame = -2 / -3
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC 143
E S SF AA+ PSARSTTWM*SRTPVPSLV *S P TV AG LPTATC
Sbjct: 190 ESS*SFLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSAGRLPTATC 44
Score = 23.1 bits (44), Expect(3) = 8e-069
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3 / +1
Query: 117 PNNLMPYVQQVAVG 158
P+NLMPYV++ G
Sbjct: 19 PHNLMPYVRKSLSG 60
>gb|BM371846.2|BM371846 EBma08_SQ004_C16_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_C16 5', mRNA sequence
Length = 398
Score = 178 bits (383), Expect(2) = 8e-065
Identities = 70/80 (87%), Positives = 76/80 (95%)
Frame = +3 / +1
Query: 51 LRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGVRDYI 230
LRYFNPVGAHPSGY+GEDP G+PNNLMPYVQQVAVGRRPALTV G DY T+DGTGVRDYI
Sbjct: 1 LRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVRDYI 180
Query: 231 HVVDLADGHIAALQKLFENS 290
HVVDLADGHIAAL+KL+E+S
Sbjct: 181 HVVDLADGHIAALRKLYEDS 240
Score = 134 bits (288), Expect(2) = 9e-050
Identities = 64/79 (81%), Positives = 65/79 (82%)
Frame = -2 / -1
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIP 110
E S SF AA+ PSARSTTWM*SRTPVPSLV *S P TV AG LPTATC T*GIRLLG P
Sbjct: 239 ESS*SFLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSAGRLPTATCWT*GIRLLGTP 60
Query: 109 RGSSPRYPLG*APTGLKYL 53
RGSSP PLG*APTGLKYL
Sbjct: 59 RGSSPM*PLG*APTGLKYL 3
Score = 90.0 bits (190), Expect(2) = 8e-065
Identities = 35/54 (64%), Positives = 44/54 (81%)
Frame = +3 / +1
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSET 443
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T
Sbjct: 235 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAAT 396
Score = 83.1 bits (175), Expect(2) = 9e-050
Identities = 36/54 (66%), Positives = 40/54 (74%)
Frame = -2 / -1
Query: 442 VSENRISASPGRLSPKIRGIFFPEAFSNALTISSTDVPLPVPRLYASHPMLEFS 281
V+ +SASP L RGIFFP+AFSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 395 VAAYTVSASPALLPA*TRGIFFPQAFSNAATISSTDVPFPVPRLYTSHPILSES 234
>gb|AV936911.1|AV936911 AV936911 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8e17 3', mRNA sequence
Length = 719
Score = 174 bits (375), Expect(2) = 8e-062
Identities = 65/92 (70%), Positives = 78/92 (84%)
Frame = +3 / -2
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T KAE+E
Sbjct: 601 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAATAKAEKE 422
Query: 462 LNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
L WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 421 LKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 326
Score = 138 bits (297), Expect(2) = 4e-044
Identities = 63/89 (70%), Positives = 67/89 (75%)
Frame = -2 / +3
Query: 547 DP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEA 368
DP*P*GFLLAQFH S HISS P AF LSS SAL V+ +SASP L RGIFFP+A
Sbjct: 336 DP*P*GFLLAQFHRSLHISSTPNLAFHLSSFSALAVAAYTVSASPALLPA*TRGIFFPQA 515
Query: 367 FSNALTISSTDVPLPVPRLYASHPMLEFS 281
FSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 516 FSNAATISSTDVPFPVPRLYTSHPILSES 602
Score = 83.5 bits (176), Expect(2) = 8e-062
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +3 / -2
Query: 168 ALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFENS 290
ALTV G DY T+DGTGVRDYIHVVDLADGHIAAL KL+E+S
Sbjct: 718 ALTVYGTDYNTKDGTGVRDYIHVVDLADGHIAALXKLYEDS 596
Score = 60.2 bits (125), Expect(2) = 4e-044
Identities = 30/41 (73%), Positives = 31/41 (75%)
Frame = -2 / +3
Query: 289 EFSKSFCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRA 167
E S S AA+ PSARSTTWM*SRTPVPSLV *S P TV A
Sbjct: 597 ESS*SXLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSA 719
>gb|BJ449925.1|BJ449925 BJ449925 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 5', mRNA sequence
Length = 588
Score = 209 bits (451), Expect = 2e-053
Identities = 82/94 (87%), Positives = 87/94 (92%)
Frame = +3 / +3
Query: 294 IGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWK 473
IGCE YNLGTG+GTSVLEIV AFEKASGKKIPL+ G+RRPGDAEILF+ T KAERELNWK
Sbjct: 3 IGCEPYNLGTGKGTSVLEIVNAFEKASGKKIPLVVGQRRPGDAEILFAGTGKAERELNWK 182
Query: 474 AKYGIEEMCRDQWNWASKNPYGYGSPDSIKQNGH 575
AKYGI EMCRDQWNWASKNPYGYGSPDS KQNG+
Sbjct: 183 AKYGITEMCRDQWNWASKNPYGYGSPDSTKQNGN 284
Score = 178 bits (384), Expect = 4e-044
Identities = 75/93 (80%), Positives = 78/93 (83%)
Frame = -2 / -3
Query: 571 PFCLIESGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKI 392
PFCL+ESGDP P*GFLLAQFHWS HIS +PYFAFQLSSLSAL V RISASPGR P
Sbjct: 280 PFCLVESGDPYP*GFLLAQFHWSLHISVMPYFAFQLSSLSALPVPAKRISASPGRR*PTT 101
Query: 391 RGIFFPEAFSNALTISSTDVPLPVPRLYASHPM 293
GIFFPEAFSNA TIS+TDVP PVPRLY SHPM
Sbjct: 100 SGIFFPEAFSNAFTISNTDVPFPVPRLYGSHPM 2
Score = 111 bits (236), Expect = 1e-023
Identities = 51/94 (54%), Positives = 63/94 (67%)
Frame = -1 / -2
Query: 575 VTILLDRVR*SIAIRVLAGPVPLVAAHLFNTVFCFPVKLPLCFSSL*KQNLCITWAPFTK 396
+ +LL RV * + +RVLA PVPLV AHL + + CFPV+ LCF+S K+NL +T A T
Sbjct: 284 IAVLLGRVG*PVPVRVLASPVPLVPAHLRDAILCFPVEFSLCFTSSCKENLGVTRAALTD 105
Query: 395 NQRYFLPRSLLKCFNNLQHRCTSSGSKVVRFTPY 294
+QR FL RSLL+C LQH S SKVV FT Y
Sbjct: 104 DQRDFLSRSLLECIYYLQH*RPFSSSKVVWFTSY 3
>gb|CA000191.1|CA000191 HS09J09u HS Hordeum vulgare subsp. vulgare cDNA clone HS09J09
3-PRIME, mRNA sequence
Length = 549
Score = 209 bits (450), Expect = 3e-053
Identities = 82/108 (75%), Positives = 92/108 (85%)
Frame = +3 / -2
Query: 219 RDYIHVVDLADGHIAALQKLFENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIF 398
RDYIHVVDLADGHIAAL+KLF IGC AYNLGTGRGT+VLE+V AFEKA GKKIP+
Sbjct: 548 RDYIHVVDLADGHIAALEKLFATPDIGCVAYNLGTGRGTTVLEMVSAFEKAYGKKIPVKM 369
Query: 399 GERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
RRPGD+E +++ T KAE+EL W+AKYGIEEMCRDQWNWA KNPYGY
Sbjct: 368 CPRRPGDSEQVYASTAKAEQELGWRAKYGIEEMCRDQWNWARKNPYGY 225
Score = 156 bits (335), Expect = 2e-037
Identities = 73/107 (68%), Positives = 77/107 (71%)
Frame = -2 / +1
Query: 541 *P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFS 362
*P GF LAQFHWS HISSIPY A Q SS SAL V S SPG L GIF P AFS
Sbjct: 226 *PYGFFLAQFHWSLHISSIPYLALQPSSCSALAVDAYTCSESPGLLGHIFTGIFLPYAFS 405
Query: 361 NALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*S 221
NALTISST VP PVPRLYA+ PM +KSF +AA+ PSARSTTWM*S
Sbjct: 406 NALTISSTVVPRPVPRLYATQPMSGVAKSFSSAAMWPSARSTTWM*S 546
>gb|BU975384.1|BU975384 HB31F04r BC Hordeum vulgare subsp. vulgare cDNA clone HB31F04
5-PRIME, mRNA sequence
Length = 501
Score = 205 bits (443), Expect = 3e-052
Identities = 80/91 (87%), Positives = 86/91 (94%)
Frame = +3 / +1
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
ICRD+ RSDP+WKIILLRYFNPVGAHPSGY+GEDP G+PNNLMPYVQQVAVGRRPALTV
Sbjct: 229 ICRDLQRSDPDWKIILLRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVY 408
Query: 183 GNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
G DY T+DGTGVRDYIHVVDLADGHIAAL+K
Sbjct: 409 GTDYNTKDGTGVRDYIHVVDLADGHIAALRK 501
Score = 155 bits (332), Expect = 6e-037
Identities = 73/91 (80%), Positives = 75/91 (82%)
Frame = -2 / -2
Query: 274 FCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSP 95
F AA+ PSARSTTWM*SRTPVPSLV *S P TV AG LPTATC T*GIRLLG PRGSSP
Sbjct: 500 FLKAAMWPSARSTTWM*SRTPVPSLVL*SVP*TVSAGRLPTATCWT*GIRLLGTPRGSSP 321
Query: 94 RYPLG*APTGLKYLSKMIFHSGSER*ISRQI 2
PLG*APTGLKYLS MIF SGSER SRQ+
Sbjct: 320 M*PLG*APTGLKYLSSMIFQSGSERWRSRQM 228
>gb|BI952869.1|BI952869 HVSMEm0008B04f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008B04f, mRNA sequence
Length = 744
Score = 171 bits (368), Expect(3) = 2e-049
Identities = 68/82 (82%), Positives = 75/82 (91%)
Frame = +3 / +1
Query: 45 ILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGNDYATRDGTGVRD 224
IL+R FNPVGAHPSGY+GEDP G+PNNLMPYVQQVAVGRRPALTV G DY T+DGTGV D
Sbjct: 7 ILVRDFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPALTVYGTDYNTKDGTGVPD 186
Query: 225 YIHVVDLADGHIAALQKLFENS 290
YIHVVDL DGHIAAL+KL++NS
Sbjct: 187 YIHVVDLPDGHIAALRKLYQNS 252
Score = 152 bits (327), Expect = 3e-036
Identities = 75/118 (63%), Positives = 81/118 (68%)
Frame = -2 / -2
Query: 397 KIRGIFFPEAFSNALTISSTDVPLPVPRLYASHPMLEFSKSFCNAAICPSARSTTWM*SR 218
K +GIFFP+ N T S T VP P + + EF SF AA+ PS RSTTWM*S
Sbjct: 359 KTQGIFFPQPLLNGATFSRTXVPFQGPDCPFAPILSEFW*SFLKAAMWPSGRSTTWM*SG 180
Query: 217 TPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSPRYPLG*APTGLKYLSKM 44
TPVPSLV *S P TV AG LPTATC T*GIRLLG PRGSSP PLG*APTGLK L+ M
Sbjct: 179 TPVPSLVL*SVP*TVSAGRLPTATCWT*GIRLLGTPRGSSPM*PLG*APTGLKSLTSM 6
Score = 38.6 bits (78), Expect(3) = 2e-049
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3 / +1
Query: 318 GTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGD 419
G +GT VLE V F K GKKIP +F ++ G+
Sbjct: 280 GPWKGTXVLEKVAPFNKGCGKKIPWVFPGKKTGN 381
Score = 24.9 bits (48), Expect(3) = 2e-049
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 510 WNWASKNPYGYG 545
W WA+KNP +G
Sbjct: 464 WKWANKNPSVWG 499
>gb|BQ766274.1|BQ766274 EBro08_SQ005_C17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_C17 5', mRNA sequence
Length = 639
Score = 193 bits (415), Expect = 2e-048
Identities = 76/87 (87%), Positives = 81/87 (93%)
Frame = +3 / +1
Query: 315 LGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEE 494
LGTG+GTSVLEIV AFEKASGKKIPL+ G+RRPGDAEILF+ T KAERELNWKAKYGI E
Sbjct: 1 LGTGKGTSVLEIVNAFEKASGKKIPLVVGQRRPGDAEILFAGTGKAERELNWKAKYGITE 180
Query: 495 MCRDQWNWASKNPYGYGSPDSIKQNGH 575
MCRDQWNWASKNPYGYGSPDS KQNG+
Sbjct: 181 MCRDQWNWASKNPYGYGSPDSTKQNGN 261
Score = 160 bits (344), Expect = 1e-038
Identities = 68/85 (80%), Positives = 71/85 (83%)
Frame = -2 / -2
Query: 571 PFCLIESGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKI 392
PFCL+ESGDP P*GFLLAQFHWS HIS +PYFAFQLSSLSAL V RISASPGR P
Sbjct: 257 PFCLVESGDPYP*GFLLAQFHWSLHISVMPYFAFQLSSLSALPVPAKRISASPGRR*PTT 78
Query: 391 RGIFFPEAFSNALTISSTDVPLPVP 317
GIFFPEAFSNA TIS+TDVP PVP
Sbjct: 77 SGIFFPEAFSNAFTISNTDVPFPVP 3
>gb|CA021085.1|CA021085 HZ39B01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39B01
5-PRIME, mRNA sequence
Length = 539
Score = 174 bits (375), Expect(2) = 8e-046
Identities = 65/92 (70%), Positives = 78/92 (84%)
Frame = +3 / +1
Query: 282 ENSSIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERE 461
++ IGCE YNLGTG+GTSVLE+V AFEKA GKKIPL++ RR GDAE +++ T KAE+E
Sbjct: 37 DSDRIGCEVYNLGTGKGTSVLEMVAAFEKACGKKIPLVYAGRRAGDAETVYAATAKAEKE 216
Query: 462 LNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
L WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 217 LKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 312
Score = 138 bits (297), Expect = 4e-032
Identities = 63/89 (70%), Positives = 67/89 (75%)
Frame = -2 / -1
Query: 547 DP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEA 368
DP*P*GFLLAQFH S HISS P AF LSS SAL V+ +SASP L RGIFFP+A
Sbjct: 302 DP*P*GFLLAQFHRSLHISSTPNLAFHLSSFSALAVAAYTVSASPALLPA*TRGIFFPQA 123
Query: 367 FSNALTISSTDVPLPVPRLYASHPMLEFS 281
FSNA TISSTDVP PVPRLY SHP+L S
Sbjct: 122 FSNAATISSTDVPFPVPRLYTSHPILSES 36
Score = 29.9 bits (59), Expect(2) = 8e-046
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +3 / +1
Query: 249 DGHIAALQKLFENS 290
DGHIAAL+KL+E+S
Sbjct: 1 DGHIAALRKLYEDS 42
>gb|BJ466608.1|BJ466608 BJ466608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32p11 3', mRNA sequence
Length = 667
Score = 183 bits (394), Expect = 2e-045
Identities = 72/83 (86%), Positives = 77/83 (92%)
Frame = +3 / -3
Query: 327 RGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRD 506
+GTSVLEIV AFEKASGKKIPL+ G+RRPGDAEILF+ T KAERELNWKAKYGI EMCRD
Sbjct: 665 KGTSVLEIVNAFEKASGKKIPLVVGQRRPGDAEILFAGTGKAERELNWKAKYGITEMCRD 486
Query: 507 QWNWASKNPYGYGSPDSIKQNGH 575
QWNWASKNPYGYGSPDS KQNG+
Sbjct: 485 QWNWASKNPYGYGSPDSTKQNGN 417
Score = 152 bits (326), Expect = 4e-036
Identities = 65/81 (80%), Positives = 68/81 (83%)
Frame = -2 / +1
Query: 571 PFCLIESGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKI 392
PFCL+ESGDP P*GFLLAQFHWS HIS +PYFAFQLSSLSAL V RISASPGR P
Sbjct: 421 PFCLVESGDPYP*GFLLAQFHWSLHISVMPYFAFQLSSLSALPVPAKRISASPGRR*PTT 600
Query: 391 RGIFFPEAFSNALTISSTDVP 329
GIFFPEAFSNA TIS+TDVP
Sbjct: 601 SGIFFPEAFSNAFTISNTDVP 663
>gb|CA013755.1|CA013755 HT09G07r HT Hordeum vulgare subsp. vulgare cDNA clone HT09G07
5-PRIME, mRNA sequence
Length = 530
Score = 177 bits (380), Expect = 1e-043
Identities = 67/89 (75%), Positives = 78/89 (87%)
Frame = +3 / +2
Query: 9 RDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVLGN 188
RD ++PEW+ ILLRYFNP+GAH SG +GEDP+G+PNNL+PY+QQVAVGRRP L V G+
Sbjct: 263 RDYQHANPEWRTILLRYFNPIGAHQSGDIGEDPKGVPNNLLPYIQQVAVGRRPELNVYGH 442
Query: 189 DYATRDGTGVRDYIHVVDLADGHIAALQK 275
DY TRDGT VRDYIHVVDLADGHIAAL+K
Sbjct: 443 DYRTRDGTAVRDYIHVVDLADGHIAALEK 529
Score = 106 bits (226), Expect = 3e-022
Identities = 51/82 (62%), Positives = 59/82 (71%)
Frame = -2 / -3
Query: 274 FCNAAICPSARSTTWM*SRTPVPSLVA*SFPKTVRAGLLPTATC*T*GIRLLGIPRGSSP 95
F +AA+ PSARSTTWM*S T VPS V *S+P T+ +G PTATC *G RLLG P GSSP
Sbjct: 528 FSSAAMWPSARSTTWM*SLTAVPSRVR*SWP*TLSSGRRPTATCWM*GSRLLGTPLGSSP 349
Query: 94 RYPLG*APTGLKYLSKMIFHSG 29
PL AP GLK S+++ HSG
Sbjct: 348 MSPLWWAPMGLK*RSRIVLHSG 283
>gb|BJ457343.1|BJ457343 BJ457343 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak27e10 3', mRNA sequence
Length = 579
Score = 174 bits (375), Expect = 7e-043
Identities = 69/80 (86%), Positives = 73/80 (91%)
Frame = +3 / -2
Query: 336 SVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWN 515
SVL IV AFEKASGKKIPL+ G+RRPGDAEILF+ T KAERELNWKAKYGI EMCRDQWN
Sbjct: 578 SVLXIVNAFEKASGKKIPLVVGQRRPGDAEILFAGTGKAERELNWKAKYGITEMCRDQWN 399
Query: 516 WASKNPYGYGSPDSIKQNGH 575
WASKNPYGYGSPDS KQNG+
Sbjct: 398 WASKNPYGYGSPDSTKQNGN 339
Score = 145 bits (311), Expect = 5e-034
Identities = 62/79 (78%), Positives = 65/79 (82%)
Frame = -2 / +1
Query: 571 PFCLIESGDP*P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKI 392
PFCL+ESGDP P*GFLLAQFHWS HIS +PYFAFQLSSLSAL V RISASPGR P
Sbjct: 343 PFCLVESGDPYP*GFLLAQFHWSLHISVMPYFAFQLSSLSALPVPAKRISASPGRR*PTT 522
Query: 391 RGIFFPEAFSNALTISSTD 335
GIFFPEAFSNA TI +TD
Sbjct: 523 SGIFFPEAFSNAFTIXNTD 579
>gb|AJ462109.1|AJ462109 AJ462109 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070B09F1, mRNA sequence
Length = 360
Score = 161 bits (346), Expect = 7e-039
Identities = 62/84 (73%), Positives = 71/84 (84%)
Frame = +3 / +1
Query: 291 SIGCEAYNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNW 470
S GC AYNLGTGRGT+VLE+V AFEKA GKKIP+ RRPGD+E +++ T KAE+EL W
Sbjct: 7 SAGCVAYNLGTGRGTTVLEMVSAFEKAYGKKIPVKMCPRRPGDSEQVYASTAKAEQELGW 186
Query: 471 KAKYGIEEMCRDQWNWASKNPYGY 542
+AKYGIEEMCRDQWNWA KNPYGY
Sbjct: 187 RAKYGIEEMCRDQWNWARKNPYGY 258
Score = 122 bits (262), Expect = 3e-027
Identities = 57/82 (69%), Positives = 58/82 (70%)
Frame = -2 / -2
Query: 541 *P*GFLLAQFHWSRHISSIPYFAFQLSSLSALVVSENRISASPGRLSPKIRGIFFPEAFS 362
*P*GF LAQFHWS HISSIPY A Q SS SAL V S SPG L GIF P AFS
Sbjct: 257 *P*GFFLAQFHWSLHISSIPYLALQPSSCSALAVDAYTCSESPGLLGHIFTGIFLPYAFS 78
Query: 361 NALTISSTDVPLPVPRLYASHP 296
NALTISST VP PVPRLYA+ P
Sbjct: 77 NALTISSTVVPRPVPRLYATQP 12
>gb|BM816328.1|BM816328 HC108D12_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108D12_SK.ab1 similar to UDP-glucose
4-epimerase,Aldose 1-epimerase,, mRNA sequence
Length = 860
Score = 142 bits (304), Expect = 4e-033
Identities = 53/64 (82%), Positives = 59/64 (92%)
Frame = +3 / +3
Query: 3 ICRDIYRSDPEWKIILLRYFNPVGAHPSGYLGEDPRGIPNNLMPYVQQVAVGRRPALTVL 182
ICRD+ RSDP+W+IILLRYFNPVGAHPSGY+GEDP G+PNNLMPYVQQVAVG+ PALTV
Sbjct: 669 ICRDLQRSDPDWEIILLRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGKXPALTVY 848
Query: 183 GNDY 194
G DY
Sbjct: 849 GTDY 860
>gb|BQ759822.1|BQ759822 EBpi05_SQ004_B16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_B16 5', mRNA sequence
Length = 646
Score = 66.1 bits (138), Expect(4) = 6e-030
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +3 / +1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTG+G SV E V+A +KA+G I + + +RRPGD ++S +K ELNW A++
Sbjct: 388 YNVGTGKGRSVKEFVEACKKATGATIKVDYLDRRPGDYAEVYSNPSKIRDELNWTAQH 561
Score = 56.5 bits (117), Expect(4) = 6e-030
Identities = 26/46 (56%), Positives = 27/46 (58%)
Frame = +3 / +1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFEN 287
A G P L V G DY T DGT VRDYI V DL D H+ AL K N
Sbjct: 238 ASGIIPGLKVRGTDYPTADGTCVRDYIDVTDLVDAHVKALGKAEPN 375
Score = 38.2 bits (77), Expect(4) = 6e-030
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 42 IILLRYFNPVGAHPSGYLGEDPR 110
+++LRYFN +G+ P G LGE PR
Sbjct: 121 VMILRYFNVIGSDPEGRLGEAPR 189
Score = 25.8 bits (50), Expect(4) = 6e-030
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +3 / +1
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
+ E W W +P GYGS
Sbjct: 568 LRESLATAWKWQKAHPGGYGS 630
>gb|AV928242.1|AV928242 AV928242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i15 3', mRNA sequence
Length = 678
Score = 67.5 bits (141), Expect(4) = 2e-029
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / -1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 360 YNVGTGRGRSVKEFVEACKKATGVDIKVHYFPRRPGDYAEVYSNPARINRELNWTAQH 187
Score = 57.9 bits (120), Expect(4) = 2e-029
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3 / -1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 510 ALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 385
Score = 36.3 bits (73), Expect(4) = 2e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3 / -1
Query: 33 EWKIILLRYFNPVGAHPSGYLGEDP 107
+ +++LRYFN +G+ P G LGE P
Sbjct: 636 DMSVMILRYFNVIGSDPEGRLGEAP 562
Score = 23.1 bits (44), Expect(4) = 2e-029
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3 / -1
Query: 486 IEEMCRDQWNWASKNPYGY 542
++E R W W K+ GY
Sbjct: 180 LQESLRVAWTWQKKHRSGY 124
>gb|BJ467826.1|BJ467826 BJ467826 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p06 3', mRNA sequence
Length = 658
Score = 67.5 bits (141), Expect(4) = 2e-029
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / -2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 363 YNVGTGRGRSVKEFVEACKKATGVDIKVHYFPRRPGDYAEVYSNPARINRELNWTAQH 190
Score = 57.9 bits (120), Expect(4) = 2e-029
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3 / -2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 513 ALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 388
Score = 36.3 bits (73), Expect(4) = 2e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3 / -2
Query: 33 EWKIILLRYFNPVGAHPSGYLGEDP 107
+ +++LRYFN +G+ P G LGE P
Sbjct: 639 DMSVMILRYFNVIGSDPEGRLGEAP 565
Score = 23.1 bits (44), Expect(4) = 2e-029
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3 / -2
Query: 486 IEEMCRDQWNWASKNPYGY 542
++E R W W K+ GY
Sbjct: 183 LQESLRVAWTWQKKHRSGY 127
>gb|BG368552.1|BG368552 HVSMEi0019L05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019L05f, mRNA sequence
Length = 618
Score = 67.5 bits (141), Expect(4) = 2e-029
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / +2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 335 YNVGTGRGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSNPARINRELNWTAQH 508
Score = 57.9 bits (120), Expect(4) = 2e-029
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3 / +2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 185 ALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 310
Score = 35.9 bits (72), Expect(4) = 2e-029
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3 / +2
Query: 42 IILLRYFNPVGAHPSGYLGEDP 107
+++LRYFN +G+ P G LGE P
Sbjct: 68 VMILRYFNVIGSDPEGRLGEAP 133
Score = 23.5 bits (45), Expect(4) = 2e-029
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +3 / +2
Query: 486 IEEMCRDQWNWASKNPYGYGSPDSI 560
+ E R +W W + GY + SI
Sbjct: 515 LPESLRGRWTWQKNHRNGYATLGSI 589
>gb|BQ759816.1|BQ759816 EBpi05_SQ004_A16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_A16 5', mRNA sequence
Length = 587
Score = 66.1 bits (138), Expect(3) = 2e-027
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +3 / +1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTG+G SV E V+A +KA+G I + + +RRPGD ++S +K ELNW A++
Sbjct: 388 YNVGTGKGRSVKEFVEACKKATGATIKVDYLDRRPGDYAEVYSNPSKIRDELNWTAQH 561
Score = 56.5 bits (117), Expect(3) = 2e-027
Identities = 26/46 (56%), Positives = 27/46 (58%)
Frame = +3 / +1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQKLFEN 287
A G P L V G DY T DGT VRDYI V DL D H+ AL K N
Sbjct: 238 ASGIIPGLKVRGTDYPTADGTCVRDYIDVTDLVDAHVKALGKAEPN 375
Score = 38.2 bits (77), Expect(3) = 2e-027
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 42 IILLRYFNPVGAHPSGYLGEDPR 110
+++LRYFN +G+ P G LGE PR
Sbjct: 121 VMILRYFNVIGSDPEGRLGEAPR 189
>gb|AV927421.1|AV927421 AV927421 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2a02 3', mRNA sequence
Length = 691
Score = 67.5 bits (141), Expect(4) = 1e-025
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / -1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 361 YNVGTGRGRSVKEFVEACKKATGVDIKVHYFPRRPGDYAEVYSNPARINRELNWTAQH 188
Score = 57.9 bits (120), Expect(4) = 1e-025
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3 / -1
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 511 ALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 386
Score = 23.1 bits (44), Expect(4) = 1e-025
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3 / -1
Query: 486 IEEMCRDQWNWASKNPYGY 542
++E R W W K+ GY
Sbjct: 181 LQESLRVAWTWQKKHRSGY 125
Score = 23.1 bits (44), Expect(4) = 1e-025
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 63 NPVGAHPSGYLGEDP 107
N +G+ P G LGE P
Sbjct: 607 NVIGSDPEGRLGEAP 563
>gb|CA022047.1|CA022047 HZ42A04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42A04
5-PRIME, mRNA sequence
Length = 533
Score = 67.5 bits (141), Expect(3) = 4e-024
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / +1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 163 YNVGTGRGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSNPARINRELNWTAQH 336
Score = 58.8 bits (122), Expect(3) = 4e-024
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = +3 / +1
Query: 144 QVAVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
+ A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 7 EAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 138
Score = 23.1 bits (44), Expect(3) = 4e-024
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3 / +1
Query: 486 IEEMCRDQWNWASKNPYGY 542
++E R W W K+ GY
Sbjct: 343 LQESLRVAWTWQKKHRSGY 399
>gb|BI956767.1|BI956767 HVSMEn0005D24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005D24f, mRNA sequence
Length = 1150
Score = 67.5 bits (141), Expect(3) = 6e-024
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / +1
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG S+ E V+A +KA+G I + + RRPGD +FS + RELNW A++
Sbjct: 250 YNVGTGRGRSMKEFVEACKKATGVDIKVDYFPRRPGDYAEVFSNPARINRELNWTAQH 423
Score = 55.6 bits (115), Expect(3) = 6e-024
Identities = 24/41 (58%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 153 VGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 103 LGIIPRLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 225
Score = 25.8 bits (50), Expect(3) = 6e-024
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 60 FNPVGAHPSGYLGEDP 107
FN +G+ P G LGE P
Sbjct: 1 FNVIGSDPXGRLGEAP 48
>gb|CA001439.1|CA001439 HS17O15u HS Hordeum vulgare subsp. vulgare cDNA clone HS17O15
3-PRIME, mRNA sequence
Length = 550
Score = 111 bits (237), Expect = 8e-024
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +3 / -2
Query: 369 ASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
A GKKIP+ RRPGD+E +++ T KAE+EL W+AKYGIEEMCRDQWNWA KNPYGY
Sbjct: 549 AYGKKIPVKMCPRRPGDSEQVYASTAKAEQELGWRAKYGIEEMCRDQWNWARKNPYGY 376
>gb|CA010057.1|CA010057 HT11K20u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K20
3-PRIME, mRNA sequence
Length = 356
Score = 111 bits (237), Expect = 8e-024
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +3 / -1
Query: 369 ASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGY 542
A GKKIP+ RRPGD+E +++ T KAE+EL W+AKYGIEEMCRDQWNWA KNPYGY
Sbjct: 356 AYGKKIPVKMCPRRPGDSEQVYASTAKAEQELGWRAKYGIEEMCRDQWNWARKNPYGY 183
>gb|BJ462342.1|BJ462342 BJ462342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n03 3', mRNA sequence
Length = 699
Score = 68.9 bits (144), Expect(3) = 3e-023
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +3 / -2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V A ++A+G I + + RRPGD +FS+ TK ELNW A++
Sbjct: 506 YNVGTGRGRSVKEFVDACKQATGVDIKIEYLSRRPGDYAEVFSDPTKINNELNWTAQH 333
Score = 52.8 bits (109), Expect(3) = 3e-023
Identities = 23/42 (54%), Positives = 26/42 (61%)
Frame = +3 / -2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 656 ALGVISGLKVKGIDYPTADGTCIRDYIDVTDLVDAHVKALNK 531
Score = 24.9 bits (48), Expect(3) = 3e-023
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +3 / -2
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
++E W W +P GYG+
Sbjct: 326 LKESLSVAWRWQKSHPRGYGA 264
>gb|BJ466593.1|BJ466593 BJ466593 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32o13 3', mRNA sequence
Length = 678
Score = 68.9 bits (144), Expect(3) = 3e-023
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +3 / -2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V A ++A+G I + + RRPGD +FS+ TK ELNW A++
Sbjct: 509 YNVGTGRGRSVKEFVDACKQATGVDIKIEYLSRRPGDYAEVFSDPTKINNELNWTAQH 336
Score = 52.8 bits (109), Expect(3) = 3e-023
Identities = 23/42 (54%), Positives = 26/42 (61%)
Frame = +3 / -2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G L V G DY T DGT +RDYI V DL D H+ AL K
Sbjct: 659 ALGVISGLKVKGIDYPTADGTCIRDYIDVTDLVDAHVKALNK 534
Score = 24.9 bits (48), Expect(3) = 3e-023
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +3 / -2
Query: 486 IEEMCRDQWNWASKNPYGYGS 548
++E W W +P GYG+
Sbjct: 329 LKESLSVAWRWQKSHPRGYGA 267
>gb|BM374192.2|BM374192 EBma03_SQ003_O16_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_O16 5', mRNA sequence
Length = 526
Score = 67.5 bits (141), Expect(3) = 4e-023
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / +2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 137 YNVGTGRGRSVKEFVEACKKATGVDIKVHYFPRRPGDYAEVYSNPARINRELNWTAQH 310
Score = 55.6 bits (115), Expect(3) = 4e-023
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = +3 / +2
Query: 165 PALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 2 PGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 112
Score = 23.1 bits (44), Expect(3) = 4e-023
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3 / +2
Query: 486 IEEMCRDQWNWASKNPYGY 542
++E R W W K+ GY
Sbjct: 317 LQESLRVAWTWQKKHRSGY 373
>gb|BQ665583.1|BQ665583 HX04E07u HX Hordeum vulgare subsp. vulgare cDNA clone HX04E07
3-PRIME, mRNA sequence
Length = 516
Score = 67.5 bits (141), Expect(3) = 4e-023
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / -2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 371 YNVGTGRGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSNPARINRELNWTAQH 198
Score = 55.6 bits (115), Expect(3) = 4e-023
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = +3 / -2
Query: 165 PALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 506 PGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 396
Score = 23.1 bits (44), Expect(3) = 4e-023
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3 / -2
Query: 486 IEEMCRDQWNWASKNPYGY 542
++E R W W K+ GY
Sbjct: 191 LQESLRVAWTWQKKHRSGY 135
>gb|AV911022.1|AV911022 AV911022 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l22 3', mRNA sequence
Length = 468
Score = 107 bits (228), Expect = 1e-022
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +3 / -1
Query: 450 AERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDSIKQNGH 575
AERELNWKAKYGI EMCRDQWNWASKNPYGYGSPDS KQNG+
Sbjct: 468 AERELNWKAKYGITEMCRDQWNWASKNPYGYGSPDSTKQNGN 343
>gb|BJ459872.1|BJ459872 BJ459872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38j12 3', mRNA sequence
Length = 469
Score = 107 bits (228), Expect = 1e-022
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +3 / -1
Query: 450 AERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDSIKQNGH 575
AERELNWKAKYGI EMCRDQWNWASKNPYGYGSPDS KQNG+
Sbjct: 469 AERELNWKAKYGITEMCRDQWNWASKNPYGYGSPDSTKQNGN 344
>gb|CA011362.1|CA011362 HT06C10u HT Hordeum vulgare subsp. vulgare cDNA clone HT06C10
3-PRIME, mRNA sequence
Length = 503
Score = 106 bits (227), Expect = 2e-022
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3 / -1
Query: 393 IFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
++ RR GDAE +++ T KAE+EL WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 503 VYAGRRAGDAETVYAATAKAEKELKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 339
>gb|CD662907.1|CD662907 UCRHV18_03cd03_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_03cd03, mRNA sequence
Length = 525
Score = 106 bits (227), Expect = 2e-022
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3 / -2
Query: 393 IFGERRPGDAEILFSETTKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPDS 557
++ RR GDAE +++ T KAE+EL WKAK+G+EEMCRD WNWASKNPYGYGS D+
Sbjct: 518 VYAGRRAGDAETVYAATAKAEKELKWKAKFGVEEMCRDLWNWASKNPYGYGSSDN 354
>gb|AV927437.1|AV927437 AV927437 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2b02 3', mRNA sequence
Length = 532
Score = 67.5 bits (141), Expect(2) = 3e-022
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3 / -2
Query: 309 YNLGTGRGTSVLEIVKAFEKASGKKIPLIFGERRPGDAEILFSETTKAERELNWKAKY 482
YN+GTGRG SV E V+A +KA+G I + + RRPGD ++S + RELNW A++
Sbjct: 291 YNVGTGRGRSVKEFVEACKKATGVDIKVHYFPRRPGDYAEVYSNPARINRELNWTAQH 118
Score = 57.9 bits (120), Expect(2) = 3e-022
Identities = 25/42 (59%), Positives = 27/42 (64%)
Frame = +3 / -2
Query: 150 AVGRRPALTVLGNDYATRDGTGVRDYIHVVDLADGHIAALQK 275
A+G P L V G DY T DGT VRDYI V DL D H+ AL K
Sbjct: 441 ALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNK 316
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 570,002,370
Number of Sequences: 312970
Number of extensions: 9703466
Number of successful extensions: 53399
Number of sequences better than 1.0e-020: 54
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 14125279922
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)