TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Libr... 318 3e-086
gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgar... 258 3e-075
gb|AV836787.1|AV836787 AV836787 K. Sato unpublished cDNA li... 103 2e-040
gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots... 146 2e-034
gb|BM098175.2|BM098175 EBpi03_SQ002_M05_R pistil, 4 DPA, no... 125 5e-028
>gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.E05, mRNA sequence
Length = 890
Score = 318 bits (689), Expect = 3e-086
Identities = 122/152 (80%), Positives = 134/152 (88%)
Frame = -2 / +2
Query: 1061 SPPDTPLRLADLYDKKDVYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQT 882
SPP TPLRLADLY+KK+VYTLDFP MP DGPPVI +SVINSTYKNF+EIVFQNND+ VQT
Sbjct: 260 SPPATPLRLADLYEKKEVYTLDFPMMPSDGPPVIGSSVINSTYKNFMEIVFQNNDTKVQT 439
Query: 881 YHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVR 702
YHIDGYAFWVVGMDYGEWT++SRGTYNKWDGVSRCTTQVFPGAWT +L LDSP FWNVR
Sbjct: 440 YHIDGYAFWVVGMDYGEWTDSSRGTYNKWDGVSRCTTQVFPGAWTGGLLPLDSPAFWNVR 619
Query: 701 TENLDTWYLGQETYIRVVDPNGGYNVTEMVAP 606
TENL WYL QETY+RVV+P+G +N T P
Sbjct: 620 TENLGPWYLWQETYLRVVEPDGSFNWTGFALP 715
Score = 240 bits (518), Expect = 1e-062
Identities = 116/159 (72%), Positives = 125/159 (78%)
Frame = +1 / -3
Query: 586 PQ*SMLSGATISVTL*PPFGSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGN 765
P+ + G+ V L P GSTTL *VS RY RFSVRTFQN GLSS + VHAPGN
Sbjct: 735 PKRGLCLGSANPVQLKLPSGSTTLR*VSCHRYQGPRFSVRTFQNAGLSSGNRPPVHAPGN 556
Query: 766 T*VVQRETPSHLL*VPRLFSVHSP*SIPTTQNAYPSMW*VWTVESLF*NTISKKFLYVEL 945
T*VVQRETPSHLL VPRL SVHSP*SIPTTQNAYPS+W*V T SLF*NTIS KFLYVEL
Sbjct: 555 T*VVQRETPSHLLYVPRLLSVHSP*SIPTTQNAYPSIW*V*TFVSLF*NTISMKFLYVEL 376
Query: 946 MTDVLITGGPSIGIVGKSSV*TSFLSYRSANLRGVSGGE 1062
MT+ ITGGPS GI+GKSSV*TSF S RSA+L GV+GGE
Sbjct: 375 MTEEPITGGPSDGIIGKSSV*TSFFS*RSASLNGVAGGE 259
Score = 182 bits (391), Expect = 4e-045
Identities = 80/140 (57%), Positives = 100/140 (71%)
Frame = +3 / -2
Query: 621 SNIIASIWIHHPDVSLLTQIPRVQVFCPYIPKSWAVK*QHHSSPCSRKHLSRATRNTIPL 800
S + AS+ HHP VSLL +P QV ++P+ AV+ Q + PCSRKHLS AT N IPL
Sbjct: 700 SPVEASVRFHHPKVSLLP*VPGAQVLRAHVPERRAVERQQAAGPCSRKHLSGATGNAIPL 521
Query: 801 VVSPTAILSPLTIVHSYNPECISINVVGLDS*VIVLKYNFQKVLVCGVNDRCSDHWRSIN 980
VV PTA + PL IVHSYNPE ISI++VGL+ V+VLK+N +VLV V+DR +DH RSI
Sbjct: 520 VVRPTAAVGPLAIVHSYNPERISIDMVGLNLRVVVLKHNLHEVLVRRVDDRRADHRRSIR 341
Query: 981 WHCREVKCVDILLVVQICQP 1040
WH EV+CVD L V+IC+P
Sbjct: 340 WHHWEVECVDFFLFVEICKP 281
Score = 175 bits (376), Expect = 5e-043
Identities = 82/139 (58%), Positives = 90/139 (64%)
Frame = -3 / +3
Query: 1048 LL*GWQICTTRRMSTHLTSLQCQLMDRQ*SEHLSLTPHTRTFWKLYFRTMTQLSRPTTLM 869
L *G QI T R+ STH TS C LMDR+*S LS T TRT W+L FRT T+ RPT M
Sbjct: 273 LH*GLQISTKRKKSTHSTSQ*CHLMDRR*SALLSSTRRTRTSWRLCFRTTTRRFRPTISM 452
Query: 868 DMHSGL*EWTMVSGLRIAVGLTTSGMVFLVARLRCFREHGLL*CCHLTAQDFGMYGQKTW 689
DM SGL*EWTM SG AVG TTSGM F VA LRCF EHG CC TA+ G ++TW
Sbjct: 453 DMRSGL*EWTMASGPTAAVGRTTSGMAFPVAPLRCFLEHGPAACCRSTARRSGTCARRTW 632
Query: 688 TRGIWVRRLTSGWWIQMEA 632
G + RRLT GWW EA
Sbjct: 633 APGTYGRRLTLGWWNLTEA 689
Score = 170 bits (366), Expect = 1e-041
Identities = 75/140 (53%), Positives = 93/140 (66%)
Frame = -1 / +1
Query: 1062 FPTRHSSKVGRSVRQEGCLHT*LPYNAN*WTASDQNICH*LHIQELFGNCISEQ*LNCPD 883
F +S + RS+R+E LHT LP +A *WTA D+ CH L +QEL G+C+SEQ D
Sbjct: 259 FTACYSIEACRSLRKERSLHTRLPNDAI*WTAGDRLFCHQLDVQELHGDCVSEQRHEGSD 438
Query: 882 LPH*WICILGCRNGLW*VD*E*PWDLQQVGWCFSLHDSGVSGSMDCCDAVT*QPRILECT 703
LP+ WIC+LGCRNGLW VD + PWD+QQVGW F LH SGVS SMD QP +LE
Sbjct: 439 LPYRWICVLGCRNGLWRVDRQQPWDVQQVGWRFPLHHSGVSWSMDRRPVAARQPGVLERA 618
Query: 702 DRKPGHVVSGSGDLHQGGGS 643
+PG +V +GDL GGG+
Sbjct: 619 HGEPGPLVPMAGDLP*GGGT 678
Score = 142 bits (305), Expect = 3e-033
Identities = 64/108 (59%), Positives = 72/108 (66%)
Frame = +2 / -1
Query: 710 SKILGCQVTASQQSMLPETPESCNEKHHPTCCKSHGYSQSTHHSPFLQPRMHIHQCGRSG 889
S+ GC+ ++SML ETPE CN K HPTCC SHG +ST HSPFLQPR HIH+ GRS
Sbjct: 611 SRTPGCRAATGRRSMLQETPEWCNGKRHPTCCTSHGCCRSTRHSPFLQPRTHIHRYGRSE 432
Query: 890 QLSHCSEIQFPKSSCMWS**QMF*SLAVHQLAL*GSQVCRHPSCRTDL 1033
CSE Q P SSC S**Q S AVHQ+A GS+VCR S R DL
Sbjct: 431 PSCRCSETQSP*SSCTSS**QKSRSPAVHQMASLGSRVCRLLSFRRDL 288
>gb|CK125352.1|CK125352 BES1824107m07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M077 5-PRIME, mRNA sequence
Length = 930
Score = 258 bits (557), Expect(2) = 3e-075
Identities = 96/142 (67%), Positives = 117/142 (82%)
Frame = -2 / +2
Query: 1061 SPPDTPLRLADLYDKKDVYTLDFPTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQT 882
SPP+TPLRLADL++ VY DFPTMP D PP +SV+N++YK FLE+VFQNN++ VQT
Sbjct: 347 SPPETPLRLADLHNLTGVYGTDFPTMPSDVPPRRASSVLNASYKGFLEMVFQNNETDVQT 526
Query: 881 YHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVR 702
YH+DGY+F+VVGMDYGEWT NSRG+YNKWD +SR TTQVFPG WTAV++SLD+ G WN+R
Sbjct: 527 YHLDGYSFFVVGMDYGEWTPNSRGSYNKWDAISRSTTQVFPGGWTAVLVSLDNVGIWNIR 706
Query: 701 TENLDTWYLGQETYIRVVDPNG 636
E LD WY GQE Y++V DP G
Sbjct: 707 AEKLDNWYNGQEVYVKVADPLG 772
Score = 167 bits (360), Expect(2) = 2e-043
Identities = 86/142 (60%), Positives = 94/142 (66%)
Frame = +1 / -1
Query: 637 PFGSTTLM*VS*PRYHVSRFSVRTFQNPGLSSDSITAVHAPGNT*VVQRETPSHLL*VPR 816
P GS T * S P Y +S FS R FQ P LSSD+ TAVH PGNT VV RE SHLL P
Sbjct: 771 PSGSATFT*TSCPLYQLSSFSARIFQMPTLSSDTRTAVHPPGNTCVVLREMASHLLYEPL 592
Query: 817 LFSVHSP*SIPTTQNAYPSMW*VWTVESLF*NTISKKFLYVELMTDVLITGGPSIGIVGK 996
LF VHSP*SIPTT+N PS W*V T SLF TIS+K L TD + GG S+GIVGK
Sbjct: 591 LFGVHSP*SIPTTKNE*PSRW*V*TSVSLFWKTISRKPL*EAFSTDEALLGGTSLGIVGK 412
Query: 997 SSV*TSFLSYRSANLRGVSGGE 1062
S *T +RSA+L GVSGGE
Sbjct: 411 SVP*TPVRLWRSASLSGVSGGE 346
Score = 105 bits (223), Expect(2) = 7e-024
Identities = 54/142 (38%), Positives = 80/142 (56%)
Frame = +3 / -3
Query: 630 IASIWIHHPDVSLLTQIPRVQVFCPYIPKSWAVK*QHHSSPCSRKHLSRATRNTIPLVVS 809
+ + WI + ++LL +P +Q+ YIP ++ V+ P S +HL R+ IPLVV
Sbjct: 778 VVAQWISNFHINLLPIVPIIQLLGTYIPDAYVVQRYQDCGPPSGEHLCGTARDGIPLVV* 599
Query: 810 PTAILSPLTIVHSYNPECISINVVGLDS*VIVLKYNFQKVLVCGVNDRCSDHWRSINWHC 989
A+ PL IVH E I+I +VGL+ +IVL+ + ++ LV + R S W I WHC
Sbjct: 598 TPAVWRPLAIVHPDYKE*ITIQMVGLNIGLIVLEDHLEEALVRSIQHR*SPPWWHIAWHC 419
Query: 990 REVKCVDILLVVQICQP*RSVG 1055
EV VD VV+I +P S+G
Sbjct: 418 GEVCSVDPCKVVEISKPQWSLG 353
Score = 45.1 bits (92), Expect(2) = 3e-075
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -2 / +2
Query: 635 GYNVTEMVAPDNMLYCGLLKDKQKAQK 555
GYNVTEM+AP LYCGLLK K+ +
Sbjct: 770 GYNVTEMIAPKXTLYCGLLKRHXKSHR 850
Score = 28.6 bits (56), Expect(2) = 2e-043
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1 / -1
Query: 583 RPQ*SMLSGATISVTL*PPFGST 651
RPQ* + GA ISVTL*P +T
Sbjct: 822 RPQ*RVFFGAIISVTL*PSGSAT 754
Score = 25.8 bits (50), Expect(2) = 7e-024
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3 / -3
Query: 579 EEATVEHVVWSHHLSNIIA 635
++ TVE +WS H +++A
Sbjct: 826 QQTTVESXLWSDHFGDVVA 770
>gb|AV836787.1|AV836787 AV836787 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd2p19, mRNA
sequence
Length = 696
Score = 103 bits (219), Expect(4) = 2e-040
Identities = 40/50 (80%), Positives = 46/50 (92%)
Frame = -2 / -2
Query: 674 GQETYIRVVDPNGGYNVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASA 525
GQETYIRVVDP+GGYNVTE V PDN L+CGLLK+KQKAQKPHGS SS+++
Sbjct: 560 GQETYIRVVDPDGGYNVTESVLPDNALFCGLLKEKQKAQKPHGSSSSSAS 411
Score = 73.0 bits (153), Expect(3) = 7e-026
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = +3 / +3
Query: 543 RTMRLLSLLFILEEATVEHVVWSHHLSNIIASIWIHHPDVSLLTQIPRVQVF 698
R MRLLSLLF LEEAT E VVW H S++IAS+ IHHPDV LL + R F
Sbjct: 429 RPMRLLSLLFFLEEATEEGVVW*HRFSHVIASVRIHHPDVRLLARGTRCPDF 584
Score = 63.4 bits (132), Expect(4) = 2e-040
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = -2 / -3
Query: 773 TQVFPGAWTAVMLSLDSPGFWNVRTE 696
++VFPGAWTAV+LSLDSPGFWNVRTE
Sbjct: 661 SRVFPGAWTAVLLSLDSPGFWNVRTE 584
Score = 57.4 bits (119), Expect(3) = 7e-026
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1 / +3
Query: 694 FSVRTFQNPGLSSDSITAVHAPGNT 768
FSVRTFQNPGLSSD+ TAVHAPGNT
Sbjct: 582 FSVRTFQNPGLSSDNRTAVHAPGNT 656
Score = 30.4 bits (60), Expect(4) = 2e-040
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / -1
Query: 800 KWDGVSRCTT 771
KWDGVSRCTT
Sbjct: 690 KWDGVSRCTT 661
Score = 25.4 bits (49), Expect(4) = 2e-040
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2 / -1
Query: 695 NLDTWYLG 672
NLDTWYLG
Sbjct: 582 NLDTWYLG 559
Score = 24.9 bits (48), Expect(3) = 7e-026
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 772 VVQRETPSHLL 804
VVQRETPSH +
Sbjct: 662 VVQRETPSHFV 694
>gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07D06V 5', mRNA sequence
Length = 694
Score = 146 bits (313), Expect = 2e-034
Identities = 55/106 (51%), Positives = 76/106 (71%)
Frame = -2 / +3
Query: 992 PTMPIDGPPVIRTSVINSTYKNFLEIVFQNNDSTVQTYHIDGYAFWVVGMDYGEWTENSR 813
P P GP ++TSV+ S ++++E+VF+N + VQ++HIDGYAFWVVGMD G+WT SR
Sbjct: 18 PDSPSGGPAYLQTSVMASNMRDYVEVVFENAEGYVQSWHIDGYAFWVVGMDGGQWTPASR 197
Query: 812 GTYNKWDGVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYL 675
YN D ++R T QV+PGAWTA+ + LD+ G WNVR+E+ YL
Sbjct: 198 QNYNLRDAIARYTLQVYPGAWTAIYMPLDNVGMWNVRSESWGRQYL 335
>gb|BM098175.2|BM098175 EBpi03_SQ002_M05_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_M05 5', mRNA sequence
Length = 525
Score = 125 bits (267), Expect = 5e-028
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -2 / +2
Query: 698 ENLDTWYLGQETYIRVVDPNGGYNVTEMVAPDNMLYCGLLKDKQKAQKPHGSRSSASA 525
ENLDTWYLGQETYIRVVDP+GGYNVTE V PDN L+CGLLK+KQKAQKPHGS SS+++
Sbjct: 2 ENLDTWYLGQETYIRVVDPDGGYNVTESVLPDNALFCGLLKEKQKAQKPHGSSSSSAS 175
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 552,344,206
Number of Sequences: 312970
Number of extensions: 9288189
Number of successful extensions: 52835
Number of sequences better than 1.0e-020: 9
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12673225439
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)