TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276425.2.1
(753 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ467007.1|BJ467007 BJ467007 K. Sato unpublished cDNA li... 230 9e-060
gb|AV915249.1|AV915249 AV915249 K. Sato unpublished cDNA li... 220 7e-057
gb|AV921857.1|AV921857 AV921857 K. Sato unpublished cDNA li... 208 3e-053
gb|BQ458898.1|BQ458898 HA02O06r HA Hordeum vulgare subsp. v... 158 1e-043
gb|BQ656596.1|BQ656596 HA02O06u HA Hordeum vulgare subsp. v... 158 1e-043
gb|AJ462461.1|AJ462461 AJ462461 S00002 Hordeum vulgare subs... 166 1e-040
gb|CA017134.1|CA017134 HV14M07u HV Hordeum vulgare subsp. v... 142 3e-033
gb|BQ660593.1|BQ660593 HI04G01u HI Hordeum vulgare subsp. v... 114 1e-032
gb|BJ459802.1|BJ459802 BJ459802 K. Sato unpublished cDNA li... 130 1e-029
gb|BI957062.1|BI957062 HVSMEn0007D16f Hordeum vulgare rachi... 94 2e-026
>gb|BJ467007.1|BJ467007 BJ467007 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35i03 3', mRNA sequence
Length = 653
Score = 230 bits (496), Expect = 9e-060
Identities = 79/121 (65%), Positives = 102/121 (84%)
Frame = +2 / -3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q+EKW DK Y+EN YYLHG+W LVD+YEEM+EN+ PGLGD RWP VTHFVGCK
Sbjct: 591 IYLLLSQKEKWMDKVYIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCK 412
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPV+RCLK+M+RAFNF DNQ+L++YGF HK L S ++KRIR++T+ P+ K+
Sbjct: 411 PCGSYGDYPVDRCLKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTTKPINDKEN 232
Query: 362 L 364
L
Sbjct: 231 L 229
Score = 142 bits (304), Expect = 3e-033
Identities = 64/95 (67%), Positives = 68/95 (71%)
Frame = -1 / +2
Query: 288 CVNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSI 109
C PY WLS KLNA SI LRHRSTG*SP LPHGLHPTKCVT+GHR SPSPG FS I
Sbjct: 305 CAKPYRRSTWLSAKLNALSILLRHRSTG*SP*LPHGLHPTKCVTNGHRSSPSPGWWFSII 484
Query: 108 SSYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMY 4
SSYLST Q P +*Y FS LS HFS C ++ Y
Sbjct: 485 SSYLSTNPAQKPCK*YEFSIYTLSIHFSFCESKRY 589
Score = 131 bits (281), Expect = 4e-030
Identities = 55/121 (45%), Positives = 80/121 (66%)
Frame = -3 / +1
Query: 364 KLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHILEASLDRVVSKFAT 185
K++L + W+ GL PDPL A LVCE I LVI KI+C++H LE ++ +++ +
Sbjct: 229 KVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSLHTLETPVNWIITIASA 408
Query: 184 RLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKVSLITPFLALCREDV 5
LAPDKVC +WPP+I +PW+V+L HLLV V Q P ++VV IL + L+ P L L ++V
Sbjct: 409 WLAPDKVCHKWPPLIPKPWMVVLHHLLVLVHQSSPETMQVV*ILYIHLVHPLLLLREQEV 588
Query: 4 H 2
+
Sbjct: 589 Y 591
>gb|AV915249.1|AV915249 AV915249 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13i20 5', mRNA sequence
Length = 579
Score = 220 bits (475), Expect = 7e-057
Identities = 76/114 (66%), Positives = 96/114 (84%)
Frame = +2 / +3
Query: 23 REKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGD 202
+EKW DK Y+EN YYLHG+W LVD+YEEM+EN+ PGLGD RWP VTHFVGCKPCG +GD
Sbjct: 36 KEKWMDKVYIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGSYGD 215
Query: 203 YPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDEL 364
YPV+RCLK+M+RAFNF DNQ+L++YGF HK L S ++KRIR++T+ P+ K+ L
Sbjct: 216 YPVDRCLKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTTKPINDKENL 377
Score = 136 bits (291), Expect = 2e-031
Identities = 62/88 (70%), Positives = 64/88 (72%)
Frame = -1 / -3
Query: 288 CVNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSI 109
C PY WLS KLNA SI LRHRSTG*SP LPHGLHPTKCVT+GHR SPSPG FS I
Sbjct: 301 CAKPYRRSTWLSAKLNALSILLRHRSTG*SP*LPHGLHPTKCVTNGHRSSPSPGWWFSII 122
Query: 108 SSYLSTKIPQ*PWR*YPFSR*ALSPHFS 25
SSYLST Q P +*Y FS LS HFS
Sbjct: 121 SSYLSTNPAQKPCK*YEFSIYTLSIHFS 38
Score = 128 bits (274), Expect = 4e-029
Identities = 54/117 (46%), Positives = 76/117 (64%)
Frame = -3 / -2
Query: 364 KLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHILEASLDRVVSKFAT 185
K++L + W+ GL PDPL A LVCE I LVI KI+C++H LE ++ +++ +
Sbjct: 377 KVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSLHTLETPVNWIITIASA 198
Query: 184 RLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKVSLITPFLALCR 14
LAPDKVC +WPP+I +PW+V+L HLLV V Q P ++VV IL + L+ P L R
Sbjct: 197 WLAPDKVCHKWPPLIPKPWMVVLHHLLVLVHQSSPETMQVV*ILYIHLVHPLLLXAR 27
>gb|AV921857.1|AV921857 AV921857 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13i20 3', mRNA sequence
Length = 664
Score = 208 bits (449), Expect = 3e-053
Identities = 72/108 (66%), Positives = 91/108 (84%)
Frame = +2 / -3
Query: 41 KAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERC 220
K Y+EN YYLHG+W LVD+YEEM+EN+ PGLGD RWP VTHFVGCKPCG +GDYPV+RC
Sbjct: 662 KVYIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHFVGCKPCGSYGDYPVDRC 483
Query: 221 LKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDEL 364
LK+M+RAFNF DNQ+L++YGF HK L S ++KRIR++T+ P+ K+ L
Sbjct: 482 LKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTTKPINDKENL 339
Score = 128 bits (275), Expect = 3e-029
Identities = 57/79 (72%), Positives = 59/79 (74%)
Frame = -1 / +1
Query: 288 CVNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSI 109
C PY WLS KLNA SI LRHRSTG*SP LPHGLHPTKCVT+GHR SPSPG FS I
Sbjct: 415 CAKPYRRSTWLSAKLNALSILLRHRSTG*SP*LPHGLHPTKCVTNGHRSSPSPGWWFSII 594
Query: 108 SSYLSTKIPQ*PWR*YPFS 52
SSYLST Q P +*Y FS
Sbjct: 595 SSYLSTNPAQKPCK*YEFS 651
Score = 121 bits (259), Expect = 4e-027
Identities = 51/108 (47%), Positives = 72/108 (66%)
Frame = -3 / +3
Query: 364 KLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHILEASLDRVVSKFAT 185
K++L + W+ GL PDPL A LVCE I LVI KI+C++H LE ++ +++ +
Sbjct: 339 KVLLVINWLCGLTPDPLDLGAFQPLVCETIQA*HLVIGKIKCSLHTLETPVNWIITIASA 518
Query: 184 RLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKVSL 41
LAPDKVC +WPP+I +PW+V+L HLLV V Q P ++VV IL + L
Sbjct: 519 WLAPDKVCHKWPPLIPKPWMVVLHHLLVLVHQSSPETMQVV*ILYIHL 662
>gb|BQ458898.1|BQ458898 HA02O06r HA Hordeum vulgare subsp. vulgare cDNA clone HA02O06
5-PRIME, mRNA sequence
Length = 443
Score = 158 bits (339), Expect(3) = 1e-043
Identities = 62/72 (86%), Positives = 67/72 (93%)
Frame = +2 / +1
Query: 191 KFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGL 370
KFGDYPVERCLK MDRAFNFGDNQ+L MYGF HKSLASRR+KRIRNETSNPL+ KD+ GL
Sbjct: 16 KFGDYPVERCLKQMDRAFNFGDNQVLHMYGFEHKSLASRRIKRIRNETSNPLDMKDDYGL 195
Query: 371 LHPAFKAVKTST 406
LHPAFKAVKT+T
Sbjct: 196 LHPAFKAVKTAT 231
Score = 107 bits (228), Expect(3) = 1e-029
Identities = 44/71 (61%), Positives = 56/71 (78%)
Frame = -3 / -3
Query: 406 CGSLHSLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHI 227
C SL LECW++QP +IL +K V GL+PDPL PA LV +PIH+QDLV+P+IE TVH+
Sbjct: 231 CSSLDGLECWVEQPVIILHIKRVTGLIPDPLDPPARKRLVLKPIHVQDLVVPEIEGTVHL 52
Query: 226 LEASLDRVVSK 194
LEASL+RV+ K
Sbjct: 51 LEASLNRVIPK 19
Score = 34.5 bits (69), Expect(3) = 1e-029
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2 / -2
Query: 569 NSPNTSHYNKDIHPITPTQTSVVTRFYKKNTL 474
+S N S YN DIHP P +VT +K T+
Sbjct: 403 SSSNISQYNIDIHPAIPKPNFLVTLILQKRTI 308
Score = 33.1 bits (66), Expect(3) = 1e-043
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1 / +3
Query: 478 VFFL*NRVTTEVWVGVMGWISLL*CEVL 561
V F RVT + G+ GWIS+L CE+L
Sbjct: 312 VLFCRIRVTRKFGFGIAGWISMLYCEML 395
Score = 25.8 bits (50), Expect(3) = 1e-029
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 494 FYKKNTLDLDPTGSRTNQENNK 429
+ K+ D DP SRTN++N +
Sbjct: 324 YKKEQL*DFDPRESRTNEQNKR 259
Score = 23.5 bits (45), Expect(3) = 1e-043
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 434 YFLGSF*ILLGLNP 475
YF+ SF*ILL NP
Sbjct: 264 YFVRSF*ILLDQNP 305
>gb|BQ656596.1|BQ656596 HA02O06u HA Hordeum vulgare subsp. vulgare cDNA clone HA02O06
3-PRIME, mRNA sequence
Length = 443
Score = 158 bits (339), Expect(3) = 1e-043
Identities = 62/72 (86%), Positives = 67/72 (93%)
Frame = +2 / -1
Query: 191 KFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGL 370
KFGDYPVERCLK MDRAFNFGDNQ+L MYGF HKSLASRR+KRIRNETSNPL+ KD+ GL
Sbjct: 428 KFGDYPVERCLKQMDRAFNFGDNQVLHMYGFEHKSLASRRIKRIRNETSNPLDMKDDYGL 249
Query: 371 LHPAFKAVKTST 406
LHPAFKAVKT+T
Sbjct: 248 LHPAFKAVKTAT 213
Score = 107 bits (228), Expect(3) = 1e-029
Identities = 44/71 (61%), Positives = 56/71 (78%)
Frame = -3 / +3
Query: 406 CGSLHSLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHI 227
C SL LECW++QP +IL +K V GL+PDPL PA LV +PIH+QDLV+P+IE TVH+
Sbjct: 213 CSSLDGLECWVEQPVIILHIKRVTGLIPDPLDPPARKRLVLKPIHVQDLVVPEIEGTVHL 392
Query: 226 LEASLDRVVSK 194
LEASL+RV+ K
Sbjct: 393 LEASLNRVIPK 425
Score = 34.5 bits (69), Expect(3) = 1e-029
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2 / +2
Query: 569 NSPNTSHYNKDIHPITPTQTSVVTRFYKKNTL 474
+S N S YN DIHP P +VT +K T+
Sbjct: 41 SSSNISQYNIDIHPAIPKPNFLVTLILQKRTI 136
Score = 33.1 bits (66), Expect(3) = 1e-043
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1 / -3
Query: 478 VFFL*NRVTTEVWVGVMGWISLL*CEVL 561
V F RVT + G+ GWIS+L CE+L
Sbjct: 132 VLFCRIRVTRKFGFGIAGWISMLYCEML 49
Score = 25.8 bits (50), Expect(3) = 1e-029
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / +3
Query: 494 FYKKNTLDLDPTGSRTNQENNK 429
+ K+ D DP SRTN++N +
Sbjct: 120 YKKEQL*DFDPRESRTNEQNKR 185
Score = 23.5 bits (45), Expect(3) = 1e-043
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 433 LFSWFVLDPVGSKS 474
LF FVLD +GSKS
Sbjct: 181 LFCSFVLDSLGSKS 140
>gb|AJ462461.1|AJ462461 AJ462461 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200052A08F1, mRNA sequence
Length = 360
Score = 166 bits (357), Expect = 1e-040
Identities = 57/90 (63%), Positives = 75/90 (83%)
Frame = +2 / +2
Query: 89 LVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQIL 268
LVD+YEEM+E + PGLGD RWP +THFVGCKPCG +GDYPVE+CL M+RAFNF DNQ+L
Sbjct: 2 LVDKYEEMMEKHHPGLGDERWPFITHFVGCKPCGSYGDYPVEQCLTGMERAFNFADNQVL 181
Query: 269 QMYGFTHKSLASRRVKRIRNETSNPLETKD 358
++YGF H+SL + +VK + N T++PL+ K+
Sbjct: 182 RLYGFRHRSLTNPKVKPVANRTASPLQNKE 271
Score = 109 bits (232), Expect = 2e-023
Identities = 47/66 (71%), Positives = 50/66 (75%)
Frame = -1 / -1
Query: 288 CVNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSI 109
C+NPY WLS KL ARS+ +RH STG*SP LP GLHPTKCV GHR SPSPG FS I
Sbjct: 201 CLNPYSLSTWLSAKLKARSMPVRHCSTG*SP*LPQGLHPTKCVMKGHRSSPSPGWCFSII 22
Query: 108 SSYLST 91
SSYLST
Sbjct: 21 SSYLST 4
>gb|CA017134.1|CA017134 HV14M07u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M07
3-PRIME, mRNA sequence
Length = 503
Score = 142 bits (304), Expect = 3e-033
Identities = 48/76 (63%), Positives = 63/76 (82%)
Frame = +2 / -1
Query: 131 GLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRR 310
GLGD RWP +THFVGCKPCG +GDYPVE+CL M+RAFNF DNQ+L++YGF H+SL + +
Sbjct: 503 GLGDERWPFITHFVGCKPCGSYGDYPVEQCLTGMERAFNFADNQVLRLYGFRHRSLTNPK 324
Query: 311 VKRIRNETSNPLETKD 358
VK + N T++PL+ K+
Sbjct: 323 VKPVANRTASPLQNKE 276
>gb|BQ660593.1|BQ660593 HI04G01u HI Hordeum vulgare subsp. vulgare cDNA clone HI04G01
3-PRIME, mRNA sequence
Length = 507
Score = 114 bits (244), Expect(4) = 1e-032
Identities = 45/54 (83%), Positives = 50/54 (92%)
Frame = +2 / -2
Query: 245 NFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVKTST 406
NFGDNQ+L MYGF HKSLASRR+KRIRNETSNPL+ KD+ GLLHPAFKAVKT+T
Sbjct: 506 NFGDNQVLHMYGFEHKSLASRRIKRIRNETSNPLDMKDDYGLLHPAFKAVKTAT 345
Score = 80.3 bits (169), Expect(3) = 9e-022
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = -3 / +3
Query: 406 CGSLHSLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKI 245
C SL LECW++QP +IL +K V GL+PDPL PA LV +PIH+QDLV+P+I
Sbjct: 345 CSSLDGLECWVEQPVIILHIKRVTGLIPDPLDPPARKRLVLKPIHVQDLVVPEI 506
Score = 34.5 bits (69), Expect(3) = 9e-022
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2 / +2
Query: 569 NSPNTSHYNKDIHPITPTQTSVVTRFYKKNTL 474
+S N S YN DIHP P +VT +K T+
Sbjct: 173 SSSNISQYNIDIHPAIPKPNFLVTLILQKRTI 268
Score = 33.1 bits (66), Expect(4) = 1e-032
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1 / -1
Query: 478 VFFL*NRVTTEVWVGVMGWISLL*CEVL 561
V F RVT + G+ GWIS+L CE+L
Sbjct: 264 VLFCRIRVTRKFGFGIAGWISMLYCEML 181
Score = 25.8 bits (50), Expect(3) = 9e-022
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / +3
Query: 494 FYKKNTLDLDPTGSRTNQENNK 429
+ K+ D DP SRTN++N +
Sbjct: 252 YKKEQL*DFDPRESRTNEQNKR 317
Score = 23.5 bits (45), Expect(4) = 1e-032
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2 / -2
Query: 587 WHKLCLTLVE 616
WH LCL L+E
Sbjct: 158 WHNLCLPLLE 129
Score = 23.5 bits (45), Expect(4) = 1e-032
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / -3
Query: 433 LFSWFVLDPVGSKS 474
LF FVLD +GSKS
Sbjct: 313 LFCSFVLDSLGSKS 272
>gb|BJ459802.1|BJ459802 BJ459802 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38f08 3', mRNA sequence
Length = 606
Score = 130 bits (278), Expect = 1e-029
Identities = 45/69 (65%), Positives = 59/69 (85%)
Frame = +2 / -1
Query: 158 VTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETS 337
VTHFVGCKPCG +GDYPV+RCLK+M+RAFNF DNQ+L++YGF HK L S ++KRIR++T+
Sbjct: 606 VTHFVGCKPCGSYGDYPVDRCLKSMERAFNFADNQVLRLYGFAHKGLESPKIKRIRSQTT 427
Query: 338 NPLETKDEL 364
P+ K+ L
Sbjct: 426 KPINDKENL 400
>gb|BI957062.1|BI957062 HVSMEn0007D16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007D16f, mRNA sequence
Length = 655
Score = 94.1 bits (199), Expect(2) = 2e-026
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +2 / +3
Query: 50 LENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFG 199
LE+ Y+LHG+W +V RYEEML + PGLGD RWPLVTHFV CKPCG+ G
Sbjct: 3 LESSYHLHGFWEEIVSRYEEMLSRWGPGLGD*RWPLVTHFVWCKPCGEPG 152
Score = 44.6 bits (91), Expect(2) = 2e-026
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2 / +1
Query: 245 NFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKD 358
+F D+QIL +YGF H SL + V+R++N+T L+ D
Sbjct: 202 DFSDDQILGLYGFQH*SLGTMAVRRVKNDTGLSLDAGD 315
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 353,888,263
Number of Sequences: 312970
Number of extensions: 5364564
Number of successful extensions: 35446
Number of sequences better than 1.0e-020: 13
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8440925091
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)