TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.21
(693 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE194623.2|BE194623 HVSMEh0086E10f Hordeum vulgare 5-45 ... 208 2e-053
gb|BQ464194.1|BQ464194 HF01J17T HF Hordeum vulgare subsp. v... 151 5e-053
gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA li... 119 2e-052
gb|BU984656.1|BU984656 HF04J11r HF Hordeum vulgare subsp. v... 151 3e-050
gb|BQ472678.1|BQ472678 HB01N04r BC Hordeum vulgare subsp. v... 104 6e-050
gb|BI952746.1|BI952746 HVSMEm0007J23f Hordeum vulgare green... 140 9e-050
gb|BI947961.1|BI947961 HVSMEl0007J23f Hordeum vulgare spike... 139 1e-049
gb|BF630973.2|BF630973 HVSMEb0014J12f Hordeum vulgare seedl... 192 2e-048
gb|BU976210.1|BU976210 HA03F10r HA Hordeum vulgare subsp. v... 106 4e-048
gb|AV924652.1|AV924652 AV924652 K. Sato unpublished cDNA li... 116 4e-047
gb|BQ468641.1|BQ468641 HM01N16T HM Hordeum vulgare subsp. v... 118 2e-046
gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedl... 109 1e-045
gb|BU998469.1|BU998469 HI11C15r HI Hordeum vulgare subsp. v... 110 3e-045
gb|BQ472621.1|BQ472621 HB01P17r BC Hordeum vulgare subsp. v... 104 3e-042
gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA li... 120 8e-042
gb|BG301295.1|BG301295 HVSMEb0020I16f Hordeum vulgare seedl... 113 1e-041
gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA li... 104 3e-040
gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. v... 105 1e-039
gb|BJ547606.1|BJ547606 BJ547606 K. Sato unpublished cDNA li... 81 3e-039
gb|BF621404.2|BF621404 HVSMEa0006M24f Hordeum vulgare seedl... 139 8e-039
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 120 1e-038
gb|AV932210.1|AV932210 AV932210 K. Sato unpublished cDNA li... 81 3e-038
gb|BJ547617.1|BJ547617 BJ547617 K. Sato unpublished cDNA li... 81 3e-038
gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. v... 96 1e-037
gb|AV912902.1|AV912902 AV912902 K. Sato unpublished cDNA li... 105 4e-037
gb|BU970797.1|BU970797 HB15L12r BC Hordeum vulgare subsp. v... 123 4e-037
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 120 9e-037
gb|AV913514.1|AV913514 AV913514 K. Sato unpublished cDNA li... 151 4e-036
gb|CA002958.1|CA002958 HS09A03r HS Hordeum vulgare subsp. v... 151 4e-036
gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA li... 100 1e-035
gb|BJ451325.1|BJ451325 BJ451325 K. Sato unpublished cDNA li... 149 1e-035
gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA li... 120 2e-035
gb|CK122213.1|CK122213 BES1824102g20 BES1824 Hordeum vulgar... 116 4e-035
gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA li... 104 1e-034
gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. v... 103 1e-034
gb|BQ471321.1|BQ471321 HV02B13r HV Hordeum vulgare subsp. v... 143 9e-034
gb|BI951286.1|BI951286 HVSMEl0025F23f Hordeum vulgare spike... 143 1e-033
gb|BI947104.1|BI947104 HVSMEl0003L04f Hordeum vulgare spike... 107 2e-032
gb|BU995874.1|BU995874 HM11K09r HM Hordeum vulgare subsp. v... 107 2e-032
gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA li... 106 4e-032
gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA li... 106 5e-032
gb|CA003210.1|CA003210 HS09M01r HS Hordeum vulgare subsp. v... 137 8e-032
gb|BF263416.3|BF263416 HV_CEa0006L01f Hordeum vulgare seedl... 105 2e-031
gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. v... 105 4e-031
gb|BJ547686.1|BJ547686 BJ547686 K. Sato unpublished cDNA li... 81 6e-031
gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgar... 106 2e-030
gb|BE601754.2|BE601754 HVSMEh0099G19f Hordeum vulgare 5-45 ... 115 2e-030
gb|AV833484.1|AV833484 AV833484 K. Sato unpublished cDNA li... 113 3e-030
gb|BU990132.1|BU990132 HF24C23r HF Hordeum vulgare subsp. v... 113 1e-029
gb|CA008162.1|CA008162 HU10B07r HU Hordeum vulgare subsp. v... 98 2e-029
gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA li... 106 1e-028
gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA li... 106 1e-028
gb|BF624761.3|BF624761 HVSMEa0017K20f Hordeum vulgare seedl... 113 2e-028
gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. v... 105 4e-028
gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike... 123 8e-028
gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. v... 123 8e-028
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 120 7e-027
gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA li... 120 7e-027
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 120 7e-027
gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DA... 119 1e-026
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 119 2e-026
gb|AV910207.1|AV910207 AV910207 K. Sato unpublished cDNA li... 105 3e-026
gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA,... 98 4e-026
gb|CA026718.1|CA026718 HZ56L20r HZ Hordeum vulgare subsp. v... 103 8e-026
gb|AV914877.1|AV914877 AV914877 K. Sato unpublished cDNA li... 83 1e-025
gb|BG365496.1|BG365496 HVSMEi0002O19f Hordeum vulgare 20 DA... 75 2e-025
gb|CA014891.1|CA014891 HT12K07r HT Hordeum vulgare subsp. v... 98 2e-025
gb|CA023296.1|CA023296 HZ45M20r HZ Hordeum vulgare subsp. v... 115 3e-025
gb|BI955975.1|BI955975 HVSMEm0025E04f Hordeum vulgare green... 53 4e-025
gb|BQ466003.1|BQ466003 HT01E20T HT Hordeum vulgare subsp. v... 107 5e-025
gb|AV933093.1|AV933093 AV933093 K. Sato unpublished cDNA li... 113 8e-025
gb|BI952657.1|BI952657 HVSMEm0007E17f Hordeum vulgare green... 113 1e-024
gb|BG417583.2|BG417583 HVSMEk0018E23f Hordeum vulgare testa... 81 2e-024
gb|BQ766937.1|BQ766937 EBro08_SQ007_D17_R root, 3 week, dro... 81 2e-024
gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA li... 106 3e-024
gb|BJ465335.1|BJ465335 BJ465335 K. Sato unpublished cDNA li... 77 1e-023
gb|BF257057.2|BF257057 HVSMEf0011L21f Hordeum vulgare seedl... 109 1e-023
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 109 2e-023
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 79 2e-023
gb|AV915416.1|AV915416 AV915416 K. Sato unpublished cDNA li... 98 2e-023
gb|BU986367.1|BU986367 HF11J16r HF Hordeum vulgare subsp. v... 77 3e-023
gb|BU997000.1|BU997000 HI06J05r HI Hordeum vulgare subsp. v... 108 4e-023
gb|BQ763070.1|BQ763070 EBro02_SQ007_H01_R root, 3 week, hyd... 107 5e-023
gb|BJ452216.1|BJ452216 BJ452216 K. Sato unpublished cDNA li... 77 5e-023
gb|AL503319.1|AL503319 AL503319 Hordeum vulgare Barke roots... 107 7e-023
gb|AL508422.1|AL508422 AL508422 Hordeum vulgare Barke devel... 105 2e-022
gb|BJ462547.1|BJ462547 BJ462547 K. Sato unpublished cDNA li... 105 2e-022
gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. v... 105 2e-022
gb|BI778494.2|BI778494 EBro07_SQ003_H09_R root, 3 week, red... 105 3e-022
gb|BQ763048.1|BQ763048 EBro02_SQ007_C02_R root, 3 week, hyd... 74 1e-021
gb|BF253874.2|BF253874 HVSMEf0002F19f Hordeum vulgare seedl... 78 3e-021
gb|AV914656.1|AV914656 AV914656 K. Sato unpublished cDNA li... 81 6e-021
>gb|BE194623.2|BE194623 HVSMEh0086E10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086E10f, mRNA sequence
Length = 819
Score = 208 bits (449), Expect = 2e-053
Identities = 83/169 (49%), Positives = 107/169 (63%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN + G++PYVTL HWDTP L D YGGFL ++IVKDY DF VC+ FGD VK
Sbjct: 42 YNSLINDVIAKGLKPYVTLHHWDTPLGLEDKYGGFLSEKIVKDYVDFTDVCYNEFGDRVK 221
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
+W TFNEP T+S++ Y TG+FAPGRCSP G+S EPYIV HN+L HA TV
Sbjct: 222 HWTTFNEPWTYSTYGYSTGVFAPGRCSPHVSAFCGAGDSAREPYIVTHNILLGHAATVAL 401
Query: 363 YNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSIDYNLGWFMEP 509
Y + Y+ + ++GI +PY N A++R +++ LGWF P
Sbjct: 402 YRRKYQKAQAGEVGITLGCHWYLPYRNFTGYKDARKRPVEFMLGWFNGP 548
>gb|BQ464194.1|BQ464194 HF01J17T HF Hordeum vulgare subsp. vulgare cDNA clone HF01J17
5-PRIME, mRNA sequence
Length = 700
Score = 151 bits (324), Expect(2) = 5e-053
Identities = 64/135 (47%), Positives = 81/135 (60%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK
Sbjct: 12 YNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADVCFKNFGDRVK 191
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
W T NEP Y G F P RCS + GNS TEPYIV H+LL AHA V
Sbjct: 192 YWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNSTTEPYIVTHHLLLAHASAVSL 371
Query: 363 YNKHYRGNKDAQIGI 407
Y + Y+ + +IG+
Sbjct: 372 YKEKYQDKQGGKIGL 416
Score = 76.7 bits (161), Expect(2) = 5e-053
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +3 / +3
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A R D+++GW+M P+V GDYP MR + RLP FT +E ++++GS+D +G N+Y
Sbjct: 462 DIAAAARMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTAEELKRVLGSFDXVGFNHY 641
Query: 633 TSRFSK 650
+ + K
Sbjct: 642 AASYVK 659
>gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 5', mRNA sequence
Length = 640
Score = 119 bits (254), Expect(2) = 2e-052
Identities = 49/116 (42%), Positives = 71/116 (61%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 290 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 469
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTS 638
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS D +GIN YT+
Sbjct: 470 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGINQYTA 637
Score = 106 bits (227), Expect(2) = 2e-052
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY+ L+H+D P AL YGG+L+ + V + D+A CF FGD VK
Sbjct: 14 YNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVK 193
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+WFTFNEP+ + Y G P RCS
Sbjct: 194 HWFTFNEPRIVALLGYDVGSNPPQRCS 274
>gb|BU984656.1|BU984656 HF04J11r HF Hordeum vulgare subsp. vulgare cDNA clone HF04J11
5-PRIME, mRNA sequence
Length = 634
Score = 151 bits (324), Expect(2) = 3e-050
Identities = 64/135 (47%), Positives = 81/135 (60%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK
Sbjct: 15 YNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADVCFKNFGDRVK 194
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
W T NEP Y G F P RCS + GNS TEPYIV H+LL AHA V
Sbjct: 195 YWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNSTTEPYIVTHHLLLAHASAVSL 374
Query: 363 YNKHYRGNKDAQIGI 407
Y + Y+ + +IG+
Sbjct: 375 YKEKYQDKQGGKIGL 419
Score = 67.5 bits (141), Expect(2) = 3e-050
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +3 / +3
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMG 620
D A R D+++GW+M P+V GDYP MR + RLP FT +E ++++GS+D +G
Sbjct: 465 DIAAAARMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTAEELKRVLGSFDFVG 632
>gb|BQ472678.1|BQ472678 HB01N04r BC Hordeum vulgare subsp. vulgare cDNA clone HB01N04
5-PRIME, mRNA sequence
Length = 700
Score = 104 bits (222), Expect(3) = 6e-050
Identities = 43/84 (51%), Positives = 54/84 (64%)
Frame = +3 / +2
Query: 12 LINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWF 191
LI+ L +GI+P+VT++H+D PQAL D Y G L + V DYT +A+VCF +FGD VK W
Sbjct: 20 LIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEVCFKNFGDRVKYWS 199
Query: 192 TFNEPQTFSSFSYGTGIFAPGRCS 263
T NEP Y GI P RCS
Sbjct: 200 TVNEPNIEPIGGYDQGILPPRRCS 271
Score = 80.3 bits (169), Expect(3) = 6e-050
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3 / +2
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A ER D+++GW+M P+V GDYP MR + RLP FTD+E + ++GS+D +G N+Y
Sbjct: 464 DIAAAERMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTDEELKTVLGSFDXVGFNHY 643
Query: 633 TSRFSK 650
+ + K
Sbjct: 644 IAVYVK 661
Score = 51.0 bits (105), Expect(3) = 6e-050
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 302 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 418
>gb|BI952746.1|BI952746 HVSMEm0007J23f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007J23f, mRNA sequence
Length = 634
Score = 140 bits (300), Expect(2) = 9e-050
Identities = 58/125 (46%), Positives = 75/125 (60%)
Frame = +3 / +1
Query: 33 NGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQT 212
+GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK W T NEP
Sbjct: 7 HGIQPHVTIYHFDFPQALQDEYHGMLSRKFIDDYTAYADVCFKNFGDRVKYWSTLNEPNI 186
Query: 213 FSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKD 392
Y G P RCS + GNS TEPYIVAH+LL AHA Y + Y+ +
Sbjct: 187 EPIGGYDVGFLPPRRCSSPFGISCDNGNSTTEPYIVAHHLLLAHASAASLYKEKYQAMQG 366
Query: 393 AQIGI 407
+IG+
Sbjct: 367 GKIGL 381
Score = 76.7 bits (161), Expect(2) = 9e-050
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +3 / +1
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A R D+++GW+M P+V GDYP MR + RLP FT +E ++++GS+D +G N+Y
Sbjct: 427 DIAAAARMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTAEELKRVLGSFDFVGFNHY 606
Query: 633 TSRFSK 650
+ + K
Sbjct: 607 GAAYMK 624
>gb|BI947961.1|BI947961 HVSMEl0007J23f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0007J23f, mRNA sequence
Length = 841
Score = 139 bits (299), Expect(2) = 1e-049
Identities = 58/124 (46%), Positives = 74/124 (59%)
Frame = +3 / +1
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK W T NEP
Sbjct: 10 GIQPHVTIYHFDFPQALQDEYHGMLSRKFIDDYTAYADVCFKNFGDRVKYWSTLNEPNIE 189
Query: 216 SSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDA 395
Y G P RCS + GNS TEPYIVAH+LL AHA Y + Y+ +
Sbjct: 190 PIGGYDVGFLPPRRCSSPFGISCDNGNSTTEPYIVAHHLLLAHASAASLYKEKYQAMQGG 369
Query: 396 QIGI 407
+IG+
Sbjct: 370 KIGL 381
Score = 76.7 bits (161), Expect(2) = 1e-049
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +3 / +1
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A R D+++GW+M P+V GDYP MR + RLP FT +E ++++GS+D +G N+Y
Sbjct: 427 DIAAAARMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTAEELKRVLGSFDFVGFNHY 606
Query: 633 TSRFSK 650
+ + K
Sbjct: 607 GAAYMK 624
>gb|BF630973.2|BF630973 HVSMEb0014J12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014J12f, mRNA sequence
Length = 792
Score = 192 bits (414), Expect = 2e-048
Identities = 80/146 (54%), Positives = 96/146 (65%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ + G+ P+VT+FH+DTPQAL D YG FL D IVKDY ++A++CF FGD VK
Sbjct: 88 YNSLIDEVLARGLMPFVTMFHFDTPQALEDKYGSFLSDNIVKDYVEYAELCFKLFGDRVK 267
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
W TFNEP F +F YGTG APGRCSP A G+S TEPYI HNLL AHAE VH
Sbjct: 268 FWTTFNEPMVFCAFGYGTGTLAPGRCSPYVSKACGAGDSSTEPYIAGHNLLIAHAEAVHL 447
Query: 363 YNKHYRGNKDAQIGIEKNVMGRVPYD 440
Y Y+ + QIGI + +PYD
Sbjct: 448 YRTRYQPAQRGQIGIVQISHWFIPYD 525
Score = 113 bits (242), Expect = 8e-025
Identities = 61/121 (50%), Positives = 68/121 (56%)
Frame = -3 / -2
Query: 364 YSWTVSA*ARRRLWATMYGSVSEFPVGLAHFCPGEHRPGAKIPVP*EKEENVCGSLKVNQ 185
Y T SA A RRLW M GSV E P A GE RPGAK+PVP* K +N GSLKV Q
Sbjct: 449 YRCTASAWAMRRLWPAM*GSVEESPAPQALETYGEQRPGAKVPVP*PKAQNTMGSLKVVQ 270
Query: 184 FFTTSPKCTKHTLAKSV*SFTIXXXXXXXXXSTSA*GVSQWKSVTYGSMPFSFNKLMSLL 5
FT SP KH+ A S *SFT+ S+ A GVS+W VT G P + M LL
Sbjct: 269 NFTRSPNSLKHSSAYST*SFTMLSLKKLPYLSSRAWGVSKWNIVTKGISPLAKTSSMRLL 90
Query: 4 * 2
*
Sbjct: 89 * 87
>gb|BU976210.1|BU976210 HA03F10r HA Hordeum vulgare subsp. vulgare cDNA clone HA03F10
5-PRIME, mRNA sequence
Length = 571
Score = 106 bits (226), Expect(2) = 4e-048
Identities = 40/78 (51%), Positives = 51/78 (65%)
Frame = +3 / +2
Query: 30 ENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQ 209
+ GI PY L+H+D P AL Y G+L +IV + D+A+ CF FGD VKNWFTFNEP+
Sbjct: 5 QQGITPYANLYHYDLPLALHQQYLGWLSPKIVGAFADYAEFCFKVFGDRVKNWFTFNEPR 184
Query: 210 TFSSFSYGTGIFAPGRCS 263
++ Y G APGRCS
Sbjct: 185 VVAALGYDNGFHAPGRCS 238
Score = 105 bits (223), Expect(2) = 4e-048
Identities = 40/105 (38%), Positives = 66/105 (62%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
G+S TEPYIV HN++ +HA V Y + Y+ ++ +IGI + + P+ + D A +
Sbjct: 254 GDSRTEPYIVTHNIILSHAAAVQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQ 433
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGS 605
R+ D+++GWF++P+ G YP SM ++ +RLP F+ DE + GS
Sbjct: 434 RARDFHIGWFLDPITNGRYPSSMLKIVGNRLPGFSADESRMVKGS 568
>gb|AV924652.1|AV924652 AV924652 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16g11 5', mRNA sequence
Length = 639
Score = 116 bits (247), Expect(2) = 4e-047
Identities = 47/118 (39%), Positives = 68/118 (57%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS EPYI AHN++ AHA T Y + YR + +GI P N +D +A +
Sbjct: 273 GNSTVEPYIAAHNMILAHAATTRLYREKYRDAQKGGVGINVYSSWSYPMTNSDVDIEAAK 452
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRF 644
R +D+ GW +EP+V GDYP M+ + RLP FT + + + G+ D +GIN+Y S +
Sbjct: 453 RYLDFVFGWILEPLVSGDYPDVMKKNVGSRLPSFTKSQSQVVKGAVDFIGINHYYSMY 626
Score = 92.3 bits (195), Expect(2) = 4e-047
Identities = 38/76 (50%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
GI+ +V L H PQ L D Y G+L +IV+D+T FA VCF FGD V W T +EP
Sbjct: 15 GIQVHVMLSHLXFPQVLDDEYAGWLSPKIVEDFTAFADVCFREFGDRVSYWTTIDEPNVS 194
Query: 216 SSFSYGTGIFAPGRCS 263
+ SY +FAPGRCS
Sbjct: 195 ALGSYDNALFAPGRCS 242
>gb|BQ468641.1|BQ468641 HM01N16T HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
5-PRIME, mRNA sequence
Length = 632
Score = 118 bits (252), Expect(2) = 2e-046
Identities = 44/87 (50%), Positives = 57/87 (65%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y RLI+ + N I PYV L+H+D P+ L + Y G+L R+V D+ FA CF +GD VK
Sbjct: 72 YHRLIDYMLANNITPYVVLYHYDLPEVLNNQYNGWLSPRVVPDFAAFADFCFKTYGDRVK 251
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
NWFT NEP+ + YG G FAPGRC+
Sbjct: 252 NWFTINEPRMMAWHGYGDGFFAPGRCT 332
Score = 87.2 bits (184), Expect(2) = 2e-046
Identities = 38/95 (40%), Positives = 53/95 (55%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYI H+L+ AHA V Y Y+ + IGI + + P D+ A
Sbjct: 348 GNSATEPYIAGHHLILAHAAAVKVYRDKYQPAQKGTIGILLDFVWYEPLTYTEEDEYAAH 527
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFT 575
R+ ++ LGW+M P+ G YP +M+ L+ RLP FT
Sbjct: 528 RAREFTLGWYMHPLTFGHYPETMQKLVGTRLPNFT 632
>gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017P19f, mRNA sequence
Length = 888
Score = 109 bits (232), Expect(2) = 1e-045
Identities = 47/87 (54%), Positives = 53/87 (60%)
Frame = +3 / +2
Query: 180 KNWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVH 359
K W TFNEP F +F YGTG APGRCSP A G+S TEPYI HNLL AHAE VH
Sbjct: 2 KFWTTFNEPMVFCAFGYGTGTLAPGRCSPYVSKACGAGDSSTEPYIAGHNLLIAHAEAVH 181
Query: 360 EYNKHYRGNKDAQIGIEKNVMGRVPYD 440
Y Y+ + QIGI + +PYD
Sbjct: 182 LYRTRYQPAQRGQIGIVQISHWFIPYD 262
Score = 94.1 bits (199), Expect(2) = 1e-045
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +3 / +2
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A +RS+D+ LGWFM PV G+YP +MR L+ RLP FT ++ E L GSYD +G+NYY
Sbjct: 278 DRHAVKRSLDFMLGWFMHPVAFGEYPATMRRLVGRRLPEFTKEQSEMLKGSYDFLGLNYY 457
Query: 633 TSRFSK 650
TS +++
Sbjct: 458 TSNYAQ 475
>gb|BU998469.1|BU998469 HI11C15r HI Hordeum vulgare subsp. vulgare cDNA clone HI11C15
5-PRIME, mRNA sequence
Length = 650
Score = 110 bits (235), Expect(2) = 3e-045
Identities = 42/117 (35%), Positives = 67/117 (57%)
Frame = +3 / +3
Query: 288 TGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQ 467
+G+S EPY+ AHN++ +HA V Y ++Y+ + IGI + P N D A
Sbjct: 300 SGDSRREPYVAAHNMIMSHAAAVDNYKRNYQATQGGSIGIVIAMKWYEPLTNSTEDILAA 479
Query: 468 ERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTS 638
R++ + + WF++P+ GDYP MR ++ LP FT +EK L D +G+N+YT+
Sbjct: 480 RRALAFEVDWFLDPIFFGDYPREMREMLSSNLPTFTSEEKRLLQSKADFIGVNHYTA 650
Score = 91.3 bits (193), Expect(2) = 3e-045
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +3 / +3
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
GIEP+VTL H+D P L +GG+L I +++ +A VCF FGD VK W T NEP F
Sbjct: 51 GIEPFVTLHHFDLPHELETRHGGWLGAGIREEFGYYADVCFKAFGDRVKFWTTLNEPNLF 230
Query: 216 SSFSYGTGIFAPGRCSP 266
+ F+Y G + P CSP
Sbjct: 231 TKFAYMLGQYPPKHCSP 281
>gb|BQ472621.1|BQ472621 HB01P17r BC Hordeum vulgare subsp. vulgare cDNA clone HB01P17
5-PRIME, mRNA sequence
Length = 585
Score = 104 bits (222), Expect(3) = 3e-042
Identities = 43/84 (51%), Positives = 54/84 (64%)
Frame = +3 / +3
Query: 12 LINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWF 191
LI+ L +GI+P+VT++H+D PQAL D Y G L + V DYT +A+VCF +FGD VK W
Sbjct: 18 LIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEVCFKNFGDRVKYWS 197
Query: 192 TFNEPQTFSSFSYGTGIFAPGRCS 263
T NEP Y GI P RCS
Sbjct: 198 TVNEPNIEPIGGYDQGILPPRRCS 269
Score = 54.7 bits (113), Expect(3) = 3e-042
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +3 / +3
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFT 575
D A ER D+++GW+M P+V GDYP MR + RLP FT
Sbjct: 462 DIAAAERMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFT 584
Score = 51.0 bits (105), Expect(3) = 3e-042
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 300 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 416
>gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 5', mRNA sequence
Length = 661
Score = 120 bits (257), Expect(2) = 8e-042
Identities = 50/120 (41%), Positives = 72/120 (60%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 197 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 376
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS D +GIN YT+ K
Sbjct: 377 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGINQYTASLMK 556
Score = 69.8 bits (146), Expect(2) = 8e-042
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = +3 / +2
Query: 84 LVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
L YGG+L+ + V + D+A CF FGD VK+WFTFNEP+ + Y G P RCS
Sbjct: 2 LEKKYGGWLNAKTVGLFADYADFCFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCS 181
>gb|BG301295.1|BG301295 HVSMEb0020I16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020I16f, mRNA sequence
Length = 902
Score = 113 bits (241), Expect(3) = 1e-041
Identities = 45/117 (38%), Positives = 75/117 (64%)
Frame = +3 / +3
Query: 303 TEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSID 482
TEPY+VA+N+L AHA H Y +H++ I I + P ++ + +A R++D
Sbjct: 282 TEPYVVAYNILLAHAGVDHAYKQHFKKEHGRLIRIALDSNWYEPLSDVD*NMKAAARAMD 461
Query: 483 YNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSKH 653
+ LGWF++P + G YP SM+ L+ DRLP ++DE + + GS D +GIN+YT+ ++++
Sbjct: 462 FELGWFLDPSMVGHYPASMQKLVSDRLPQLSNDESQLVSGSLDSVGINHYTTVYARN 632
Score = 55.6 bits (115), Expect(3) = 1e-041
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3 / +2
Query: 30 ENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFG 170
+ GI PY+TL H D PQ+L D YG L+ ++ +D+ +A CF FG
Sbjct: 8 DKGIPPYITL*HSDLPQSLNDQYGCLLN*QVHEDFVHYASTCFNEFG 148
Score = 39.1 bits (79), Expect(3) = 1e-041
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3 / +3
Query: 180 KNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
K+W T NEP F+ Y GI AP RCS
Sbjct: 159 KHWITINEPHNFTIDGYYFGIHAPVRCS 242
>gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 5', mRNA sequence
Length = 535
Score = 104 bits (222), Expect(2) = 3e-040
Identities = 43/105 (40%), Positives = 63/105 (60%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 218 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 397
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGS 605
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS
Sbjct: 398 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGS 532
Score = 80.8 bits (170), Expect(2) = 3e-040
Identities = 32/67 (47%), Positives = 41/67 (61%)
Frame = +3 / +2
Query: 63 HWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGI 242
H+D P AL YGG+L+ + V + D+A CF FGD VK+WFTFNEP+ + Y G
Sbjct: 2 HYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVKHWFTFNEPRIVALLGYDVGS 181
Query: 243 FAPGRCS 263
P RCS
Sbjct: 182 NPPQRCS 202
>gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
5-PRIME, mRNA sequence
Length = 632
Score = 105 bits (223), Expect(3) = 1e-039
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ + + G+ PYV L H+D P AL Y GFL +IV + D+A+ CF +GD +K
Sbjct: 90 YNNLIDYVIKQGLTPYVNLNHYDIPLALQKKYDGFLSPKIVNIFADYAEFCFKTYGDRIK 269
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
NWFTFNEP+ ++ + TG P RC+
Sbjct: 270 NWFTFNEPRIVAALGFDTGTNPPNRCT 350
Score = 49.6 bits (102), Expect(3) = 1e-039
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPY V HN+L HA V Y Y+ ++ ++GI
Sbjct: 366 GNSATEPYTVVHNILLCHATAVARYRNKYQASQKGKVGI 482
Score = 46.4 bits (95), Expect(3) = 1e-039
Identities = 13/35 (37%), Positives = 27/35 (77%)
Frame = +3 / +3
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKD 557
D A +R+ D+++GWF++P++ G YP +M+ ++K+
Sbjct: 528 DKAAAQRARDFHVGWFLDPLLNGQYPKTMQDIVKE 632
>gb|BJ547606.1|BJ547606 BJ547606 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32o19 5', mRNA sequence
Length = 642
Score = 80.8 bits (170), Expect(3) = 3e-039
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3 / +2
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A ER D+++GW+M P+V GDYP MR + RLP FTD+E + ++GS+D +G N+Y
Sbjct: 362 DIAAAERMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTDEELKTVLGSFDFVGFNHY 541
Query: 633 TSRFSK 650
+ + K
Sbjct: 542 IAVYVK 559
Score = 68.0 bits (142), Expect(3) = 3e-039
Identities = 28/56 (50%), Positives = 32/56 (57%)
Frame = +3 / +2
Query: 96 YGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
Y G L + V DYT +A+VCF +FGD VK W T NEP Y GI P RCS
Sbjct: 2 YNGMLSRKFVDDYTAYAEVCFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCS 169
Score = 51.0 bits (105), Expect(3) = 3e-039
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 200 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 316
>gb|BF621404.2|BF621404 HVSMEa0006M24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006M24f, mRNA sequence
Length = 821
Score = 139 bits (299), Expect(2) = 8e-039
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ + G+ P+VT+FH+DTPQAL D YG FL D IVKDY ++A++CF FGD VK
Sbjct: 429 YNSLIDEVLARGLMPFVTMFHFDTPQALEDKYGSFLSDNIVKDYVEYAELCFKLFGDRVK 608
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSP 266
W TFNEP F +F YGTG APGRCSP
Sbjct: 609 FWTTFNEPMVFCAFGYGTGTLAPGRCSP 692
Score = 40.5 bits (82), Expect(2) = 8e-039
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYR 380
G+S TEPY HNLL HAE VH Y+
Sbjct: 718 GDSSTEPYXXGHNLLIXHAEAVHLVRTRYQ 807
>gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_E07 5', mRNA sequence
Length = 715
Score = 120 bits (257), Expect(2) = 1e-038
Identities = 50/120 (41%), Positives = 72/120 (60%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 148 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 327
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS D +GIN YT+ K
Sbjct: 328 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGINQYTASLMK 507
Score = 59.3 bits (123), Expect(2) = 1e-038
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +3 / +1
Query: 132 YTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+ D+A CF FGD VK+WFTFNEP+ + Y G P RCS
Sbjct: 1 FADYADFCFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCS 132
>gb|AV932210.1|AV932210 AV932210 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2l09 5', mRNA sequence
Length = 655
Score = 80.8 bits (170), Expect(3) = 3e-038
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3 / +1
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A ER D+++GW+M P+V GDYP MR + RLP FTD+E + ++GS+D +G N+Y
Sbjct: 373 DIAAAERMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTDEELKTVLGSFDFVGFNHY 552
Query: 633 TSRFSK 650
+ + K
Sbjct: 553 IAVYVK 570
Score = 64.8 bits (135), Expect(3) = 3e-038
Identities = 27/54 (50%), Positives = 31/54 (57%)
Frame = +3 / +1
Query: 102 GFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
G L + V DYT +A+VCF +FGD VK W T NEP Y GI P RCS
Sbjct: 19 GMLSRKFVDDYTAYAEVCFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCS 180
Score = 51.0 bits (105), Expect(3) = 3e-038
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 211 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 327
>gb|BJ547617.1|BJ547617 BJ547617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal33e03 5', mRNA sequence
Length = 649
Score = 80.8 bits (170), Expect(3) = 3e-038
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3 / +3
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A ER D+++GW+M P+V GDYP MR + RLP FTD+E + ++GS+D +G N+Y
Sbjct: 363 DIAAAERMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTDEELKTVLGSFDFVGFNHY 542
Query: 633 TSRFSK 650
+ + K
Sbjct: 543 IAVYVK 560
Score = 64.8 bits (135), Expect(3) = 3e-038
Identities = 27/54 (50%), Positives = 31/54 (57%)
Frame = +3 / +3
Query: 102 GFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
G L + V DYT +A+VCF +FGD VK W T NEP Y GI P RCS
Sbjct: 9 GMLSRKFVDDYTAYAEVCFKNFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCS 170
Score = 51.0 bits (105), Expect(3) = 3e-038
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 201 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 317
>gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18C11
5-PRIME, mRNA sequence
Length = 636
Score = 95.9 bits (203), Expect(2) = 1e-037
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +3 / +1
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
GI PY+ L+H+D P AL YGG+L+ + V + D+A CF FGD VK+WFTFNEP+
Sbjct: 145 GITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVKHWFTFNEPRIV 324
Query: 216 SSFSYGTGIFAPGRCS 263
+ Y G P RCS
Sbjct: 325 ALLGYDVGSNPPQRCS 372
Score = 80.3 bits (169), Expect(2) = 1e-037
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 388 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 567
Query: 471 RSIDYNLGWFMEPVVRGDYP 530
R+ D+++GWF++P++ G YP
Sbjct: 568 RARDFHVGWFVDPLINGHYP 627
>gb|AV912902.1|AV912902 AV912902 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10o07 5', mRNA sequence
Length = 645
Score = 105 bits (224), Expect(2) = 4e-037
Identities = 46/102 (45%), Positives = 57/102 (55%)
Frame = +3 / +1
Query: 102 GFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCA 281
G L + + DYT +A VCF +FGD VK W T NEP Y G F P RCS +
Sbjct: 7 GMLSRKFIDDYTVYADVCFKNFGDRVKYWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGIS 186
Query: 282 NPTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIV H+LL AHA V Y + Y+ + +IG+
Sbjct: 187 CNNGNSTTEPYIVTHHLLLAHASAVSLYKEKYQDKQGGKIGL 312
Score = 69.3 bits (145), Expect(2) = 4e-037
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = +3 / +2
Query: 492 GWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
GW+M P+V GDYP MR + RLP FT +E ++++GS+D +G N+Y + + K
Sbjct: 398 GWYMHPLVHGDYPPVMRKNVGSRLPSFTAEELKRVLGSFDFVGFNHYAASYVK 556
>gb|BU970797.1|BU970797 HB15L12r BC Hordeum vulgare subsp. vulgare cDNA clone HB15L12
5-PRIME, mRNA sequence
Length = 587
Score = 123 bits (264), Expect(2) = 4e-037
Identities = 48/120 (40%), Positives = 76/120 (63%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
G+S TEPYIV HN++ +HA V Y + Y+ ++ +IGI + + P+ + D A +
Sbjct: 111 GDSRTEPYIVTHNIILSHAAAVQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQ 290
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+++GWF++P+ G YP SM ++ +RLP F+ DE + GS D +GIN YTS + K
Sbjct: 291 RARDFHIGWFLDPITNGRYPSSMLKIVGNRLPGFSADESRMVKGSIDYVGINQYTSYYMK 470
Score = 51.0 bits (105), Expect(2) = 4e-037
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3 / +3
Query: 180 KNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
KNWFTFNEP+ ++ Y G APGRCS
Sbjct: 12 KNWFTFNEPRVVAALGYDNGFHAPGRCS 95
>gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 5', mRNA sequence
Length = 649
Score = 120 bits (257), Expect(2) = 9e-037
Identities = 50/120 (41%), Positives = 72/120 (60%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 135 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 314
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS D +GIN YT+ K
Sbjct: 315 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGINQYTASLMK 494
Score = 52.8 bits (109), Expect(2) = 9e-037
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3 / +3
Query: 153 CFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
CF FGD VK+WFTFNEP+ + Y G P RCS
Sbjct: 9 CFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCS 119
>gb|AV913514.1|AV913514 AV913514 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22f16 5', mRNA sequence
Length = 647
Score = 151 bits (324), Expect = 4e-036
Identities = 64/135 (47%), Positives = 81/135 (60%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK
Sbjct: 164 YNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADVCFKNFGDRVK 343
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
W T NEP Y G F P RCS + GNS TEPYIV H+LL AHA V
Sbjct: 344 YWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNSTTEPYIVTHHLLLAHASAVSL 523
Query: 363 YNKHYRGNKDAQIGI 407
Y + Y+ + +IG+
Sbjct: 524 YKEKYQDKQGGKIGL 568
>gb|CA002958.1|CA002958 HS09A03r HS Hordeum vulgare subsp. vulgare cDNA clone HS09A03
5-PRIME, mRNA sequence
Length = 447
Score = 151 bits (324), Expect = 4e-036
Identities = 64/135 (47%), Positives = 81/135 (60%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK
Sbjct: 35 YNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADVCFKNFGDRVK 214
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
W T NEP Y G F P RCS + GNS TEPYIV H+LL AHA V
Sbjct: 215 YWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNSTTEPYIVTHHLLLAHASAVSL 394
Query: 363 YNKHYRGNKDAQIGI 407
Y + Y+ + +IG+
Sbjct: 395 YKEKYQDKQGGKIGL 439
>gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 5', mRNA sequence
Length = 496
Score = 99.6 bits (211), Expect(2) = 1e-035
Identities = 41/98 (41%), Positives = 58/98 (59%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 202 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 381
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDE 584
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E
Sbjct: 382 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAE 495
Score = 70.3 bits (147), Expect(2) = 1e-035
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +3 / +1
Query: 78 QALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGR 257
+ L YGG+L+ + V + D+A CF FGD VK+WFTFNEP+ + Y G P R
Sbjct: 1 RGLEKKYGGWLNAKTVGLFADYADFCFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQR 180
Query: 258 CS 263
CS
Sbjct: 181 CS 186
>gb|BJ451325.1|BJ451325 BJ451325 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak33i24 5', mRNA sequence
Length = 636
Score = 149 bits (320), Expect = 1e-035
Identities = 63/135 (46%), Positives = 80/135 (59%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK
Sbjct: 117 YNNLINELLSHGIQPHVTIYHFDFPQALQDEYHGMLSRKFIDDYTAYADVCFKNFGDRVK 296
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHE 362
W T NEP Y G P RCS + GNS TEPYIVAH+LL AHA
Sbjct: 297 YWSTLNEPNIEPIGGYDVGFLPPRRCSSPFGISCDNGNSTTEPYIVAHHLLLAHASAASL 476
Query: 363 YNKHYRGNKDAQIGI 407
Y + Y+ + +IG+
Sbjct: 477 YKEKYQAMQGGKIGL 521
>gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 5', mRNA sequence
Length = 597
Score = 120 bits (257), Expect(2) = 2e-035
Identities = 50/120 (41%), Positives = 72/120 (60%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 149 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 328
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTSRFSK 650
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS D +GIN YT+ K
Sbjct: 329 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGINQYTASLMK 508
Score = 48.7 bits (100), Expect(2) = 2e-035
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +3 / +2
Query: 156 FVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
F FGD VK+WFTFNEP+ + Y G P RCS
Sbjct: 26 FKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCS 133
>gb|CK122213.1|CK122213 BES1824102g20 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G202 5-PRIME, mRNA sequence
Length = 827
Score = 116 bits (249), Expect(2) = 4e-035
Identities = 45/85 (52%), Positives = 54/85 (63%)
Frame = +3 / +2
Query: 126 KDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLT 305
KDY DF VC FGD VK+W TFNEP T+S++ Y TG+FAPGRCSP + G+S
Sbjct: 11 KDYVDFTDVCXXXFGDRVKHWTTFNEPWTYSTYGYSTGVFAPGRCSPHVSASCGAGDSXR 190
Query: 306 EPYIVAHNLLRAHAETVHEYNKHYR 380
EPYIV HN+L HA Y Y+
Sbjct: 191 EPYIVTHNILLXHAAIFXLYRXKYQ 265
Score = 51.0 bits (105), Expect(2) = 4e-035
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3 / +1
Query: 465 QERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVG 602
+ + +++ LGWFM+P+V GDYP SMR + R FT K + G
Sbjct: 352 KXKRVEFMLGWFMDPIVXGDYPXSMRXWXRARXXXFTPXXKGEXRG 489
>gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 5', mRNA sequence
Length = 493
Score = 104 bits (222), Expect(2) = 1e-034
Identities = 43/105 (40%), Positives = 63/105 (60%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 179 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 358
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGS 605
R+ D+++GWF++P++ G YP M+ L+K+RLP FT E + ++GS
Sbjct: 359 RARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGS 493
Score = 62.0 bits (129), Expect(2) = 1e-034
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +3 / +2
Query: 102 GFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
G+L+ V + D+A CF FGD VK+WFTFNEP+ + Y G P RCS
Sbjct: 2 GWLNAXTVGLFADYADFCFKTFGDRVKHWFTFNEPRIVALLGYDVGSNPPQRCS 163
>gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57H22
5-PRIME, mRNA sequence
Length = 491
Score = 103 bits (220), Expect(2) = 1e-034
Identities = 41/84 (48%), Positives = 53/84 (63%)
Frame = +3 / +3
Query: 12 LINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWF 191
LIN L + GI PY+ L+H+D P AL YGG+L+ + V + D+A CF FGD VK+WF
Sbjct: 18 LINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVKHWF 197
Query: 192 TFNEPQTFSSFSYGTGIFAPGRCS 263
TFNEP+ + Y G P RCS
Sbjct: 198 TFNEPRIVALLGYDVGSNPPQRCS 269
Score = 62.5 bits (130), Expect(2) = 1e-034
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 285 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 464
Query: 471 RSIDYNLGW 497
R+ D+++GW
Sbjct: 465 RARDFHVGW 491
>gb|BQ471321.1|BQ471321 HV02B13r HV Hordeum vulgare subsp. vulgare cDNA clone HV02B13
5-PRIME, mRNA sequence
Length = 641
Score = 143 bits (307), Expect = 9e-034
Identities = 59/157 (37%), Positives = 87/157 (55%)
Frame = +3 / +3
Query: 168 GDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHA 347
GD V++W T +EP + +Y +G F P RCS TG+S EPY VAH+ + AHA
Sbjct: 9 GDRVRHWTTMDEPNVIAIAAYDSGAFPPCRCSAPYGVNCTTGDSTVEPYTVAHHSILAHA 188
Query: 348 ETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSIDYNLGWFMEPVVRGDY 527
V Y Y+ + +GI P+ + D A +RS+D+ +GW ++P+V+GDY
Sbjct: 189 SAVRLYRDKYQATQGGLVGINIYTFWNYPFSHSPADVAATQRSLDFMVGWILDPLVKGDY 368
Query: 528 PFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYYTS 638
P M+ R+P FT + E + G D +GIN+YTS
Sbjct: 369 PEIMKKKAGPRIPSFTKQQSELIRGCIDFVGINHYTS 479
>gb|BI951286.1|BI951286 HVSMEl0025F23f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025F23f, mRNA sequence
Length = 570
Score = 143 bits (306), Expect = 1e-033
Identities = 60/165 (36%), Positives = 90/165 (54%)
Frame = +3 / +3
Query: 48 YVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTFSSFS 227
+VTL+H D PQ L D Y G+L R+V D+T FA CF FGD V++W T +EP + +
Sbjct: 6 HVTLYHLDFPQILEDEYHGWLSPRVVDDFTAFADACFREFGDRVRHWTTMDEPNVIAIAA 185
Query: 228 YGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
Y +G F P RCS TG+S EPY VAH+ + AHA V Y Y+ + +GI
Sbjct: 186 YDSGAFPPCRCSAPYGVNCTTGDSTVEPYTVAHHSILAHAFGVRVYRDKYQATQGGLVGI 365
Query: 408 EKNVMGRVPYDNMFLDDQAQERSIDYNLGWFMEPVVRGDYPFSMR 542
P+ + D ++++D+ GW ++P D+P+ ++
Sbjct: 366 NIYTFWNYPFFHSPGDVXGTQKALDFMGGWILDPFGERDFPWIIK 500
>gb|BI947104.1|BI947104 HVSMEl0003L04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003L04f, mRNA sequence
Length = 1046
Score = 107 bits (229), Expect(2) = 2e-032
Identities = 44/87 (50%), Positives = 55/87 (63%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +GI+P+VT++H+D PQAL D Y G L + V DYT +A+VCF +FGD VK
Sbjct: 71 YNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEVCFKNFGDRVK 250
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP Y GI P RCS
Sbjct: 251 YWSTVNEPNIEPIGGYDQGILPPRRCS 331
Score = 51.0 bits (105), Expect(2) = 2e-032
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 362 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 478
>gb|BU995874.1|BU995874 HM11K09r HM Hordeum vulgare subsp. vulgare cDNA clone HM11K09
5-PRIME, mRNA sequence
Length = 620
Score = 107 bits (229), Expect(2) = 2e-032
Identities = 44/87 (50%), Positives = 55/87 (63%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ L +GI+P+VT++H+D PQAL D Y G L + V DYT +A+VCF +FGD VK
Sbjct: 116 YNNLIDELLAHGIQPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEVCFKNFGDRVK 295
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T NEP Y GI P RCS
Sbjct: 296 YWSTVNEPNIEPIGGYDQGILPPRRCS 376
Score = 51.0 bits (105), Expect(2) = 2e-032
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 407 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 523
>gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 5', mRNA sequence
Length = 630
Score = 106 bits (227), Expect(2) = 4e-032
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY+ L+H+D P AL YGG+L+ + V + D+A CF FGD VK
Sbjct: 169 YNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVK 348
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+WFTFNEP+ + Y G P RCS
Sbjct: 349 HWFTFNEPRIVALLGYDVGSNPPQRCS 429
Score = 51.0 bits (105), Expect(2) = 4e-032
Identities = 24/62 (38%), Positives = 31/62 (50%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
GNS TEPYIVAHN L AH V Y Y+ + ++GI + N D A +
Sbjct: 445 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQ 624
Query: 471 RS 476
R+
Sbjct: 625 RA 630
>gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 5', mRNA sequence
Length = 608
Score = 106 bits (227), Expect(2) = 5e-032
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY+ L+H+D P AL YGG+L+ + V + D+A CF FGD VK
Sbjct: 152 YNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVK 331
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+WFTFNEP+ + Y G P RCS
Sbjct: 332 HWFTFNEPRIVALLGYDVGSNPPQRCS 412
Score = 50.6 bits (104), Expect(2) = 5e-032
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAHN L AH V Y Y+ + ++GI
Sbjct: 428 GNSATEPYIVAHNFLLAHGYAVARYRTKYQAAQKGKVGI 544
>gb|CA003210.1|CA003210 HS09M01r HS Hordeum vulgare subsp. vulgare cDNA clone HS09M01
5-PRIME, mRNA sequence
Length = 379
Score = 137 bits (293), Expect = 8e-032
Identities = 58/114 (50%), Positives = 70/114 (61%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L +GI+P+VT++H+D PQAL D Y G L + + DYT +A VCF +FGD VK
Sbjct: 36 YNNLINELLRHGIQPHVTVYHFDLPQALQDEYNGMLSRKFIDDYTVYADVCFKNFGDRVK 215
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCSPGQKCANPTGNSLTEPYIVAHNLLRAH 344
W T NEP Y G F P RCS + GNS TEPYIV H+LL AH
Sbjct: 216 YWSTLNEPNIEPIGGYDQGFFPPQRCSLPFGISCNNGNSTTEPYIVTHHLLLAH 377
>gb|BF263416.3|BF263416 HV_CEa0006L01f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006L01f, mRNA sequence
Length = 841
Score = 105 bits (225), Expect(2) = 2e-031
Identities = 42/112 (37%), Positives = 65/112 (58%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQE 470
G+S EPYI AHN+L AHA Y + Y+ + +G+ + P N D +A +
Sbjct: 150 GDSTVEPYIAAHNMLLAHASAARLYREKYQAVQKGFVGLSIYSLWPYPVTNSTADLEATK 329
Query: 471 RSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGIN 626
R +D+ LGW +EP++ GDYP M+ ++ RLP FT + + ++ S D +GIN
Sbjct: 330 RCLDFFLGWILEPLMSGDYPERMKKIVGTRLPSFTRIQSQAIIASADFIGIN 485
Score = 49.6 bits (102), Expect(2) = 2e-031
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = +3 / +3
Query: 150 VCFVHFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
VCF FGD V W T +EP + SY G+ APG CS
Sbjct: 6 VCFREFGDRVSYWTTIDEPNVGAMGSYDIGVIAPGHCS 119
>gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A09
5-PRIME, mRNA sequence
Length = 637
Score = 105 bits (223), Expect(2) = 4e-031
Identities = 39/87 (44%), Positives = 55/87 (63%)
Frame = +3 / +3
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ + + G+ PYV L H+D P AL Y GFL +IV + D+A+ CF +GD +K
Sbjct: 186 YNNLIDYVIKQGLTPYVNLNHYDIPLALQKKYDGFLSPKIVNIFADYAEFCFKTYGDRIK 365
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
NWFTFNEP+ ++ + TG P RC+
Sbjct: 366 NWFTFNEPRIVAALGFDTGTNPPNRCT 446
Score = 49.6 bits (102), Expect(2) = 4e-031
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +3 / +3
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPY V HN+L HA V Y Y+ ++ ++GI
Sbjct: 462 GNSATEPYTVVHNILLCHATAVARYRNKYQASQKGKVGI 578
>gb|BJ547686.1|BJ547686 BJ547686 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34n12 5', mRNA sequence
Length = 647
Score = 80.8 bits (170), Expect(3) = 6e-031
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3 / +2
Query: 453 DDQAQERSIDYNLGWFMEPVVRGDYPFSMRSLIKDRLPYFTDDEKEKLVGSYDIMGINYY 632
D A ER D+++GW+M P+V GDYP MR + RLP FTD+E + ++GS+D +G N+Y
Sbjct: 359 DIAAAERMNDFHIGWYMHPLVHGDYPPVMRKNVGSRLPSFTDEELKTVLGSFDFVGFNHY 538
Query: 633 TSRFSK 650
+ + K
Sbjct: 539 IAVYVK 556
Score = 51.0 bits (105), Expect(3) = 6e-031
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 197 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 313
Score = 40.0 bits (81), Expect(3) = 6e-031
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +3 / +2
Query: 162 HFGDVVKNWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+FGD VK W T NEP Y GI P RCS
Sbjct: 65 NFGDRVKYWSTVNEPNIEPIGGYDQGILPPRRCS 166
>gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P022 5-PRIME, mRNA sequence
Length = 750
Score = 106 bits (227), Expect(2) = 2e-030
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LIN L + GI PY+ L+H+D P AL YGG+L+ + V + D+A CF FGD VK
Sbjct: 235 YNNLINYLLQKGITPYINLYHYDLPLALEKKYGGWLNAKTVGLFADYADFCFKTFGDRVK 414
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
+WFTFNEP+ + Y G P RCS
Sbjct: 415 HWFTFNEPRIVALLGYDVGSNPPQRCS 495
Score = 45.5 bits (93), Expect(2) = 2e-030
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQ 398
GNS TEPYIVAHN L AH V Y G+ + +
Sbjct: 511 GNSATEPYIVAHNFLLAHGYAVARYRDQVSGSSERE 618
>gb|BE601754.2|BE601754 HVSMEh0099G19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099G19f, mRNA sequence
Length = 505
Score = 115 bits (246), Expect(2) = 2e-030
Identities = 44/87 (50%), Positives = 57/87 (65%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y RLI+ + + GI PY L+H+D P AL Y G+L +IV + D+A+ CF FGD VK
Sbjct: 116 YNRLIDYMLQQGITPYANLYHYDLPLALHQQYLGWLSPKIVGAFADYAEFCFKVFGDRVK 295
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
NWFTFNEP+ ++ Y G APGRCS
Sbjct: 296 NWFTFNEPRVVAALGYDNGFHAPGRCS 376
Score = 36.3 bits (73), Expect(2) = 2e-030
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETV 356
G+S TEPYIV HN++ +HA V
Sbjct: 392 GDSRTEPYIVTHNIILSHAAAV 457
>gb|AV833484.1|AV833484 AV833484 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags13e14, mRNA sequence
Length = 595
Score = 113 bits (242), Expect(2) = 3e-030
Identities = 44/87 (50%), Positives = 56/87 (64%)
Frame = +3 / +1
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y +IN L + GI+P+VT+FH+D P L + YGG+L I KD+ FAKVCF FGD VK
Sbjct: 229 YNAIINALLQKGIQPFVTIFHYDIPHELEERYGGWLSPEIQKDFGYFAKVCFKLFGDRVK 408
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRCS 263
W T N+P + F+Y G F PG CS
Sbjct: 409 FWVTMNQPNLLAKFAYMDGWFPPGHCS 489
Score = 37.7 bits (76), Expect(2) = 3e-030
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3 / +1
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEY 365
GNS EPYIV HN++ +HA V Y
Sbjct: 514 GNSSIEPYIVGHNMILSHANAVSIY 588
>gb|BU990132.1|BU990132 HF24C23r HF Hordeum vulgare subsp. vulgare cDNA clone HF24C23
5-PRIME, mRNA sequence
Length = 661
Score = 113 bits (241), Expect(2) = 1e-029
Identities = 43/86 (50%), Positives = 57/86 (66%)
Frame = +3 / +2
Query: 3 YKRLINLLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVK 182
Y LI+ + E GI+PY TL+HWD P L + GG+L D+IV+ + +A+ CF +FGD VK
Sbjct: 215 YNNLIDFMIEKGIQPYATLYHWDLPHNLQRTMGGWLSDKIVEYFALYAEACFANFGDRVK 394
Query: 183 NWFTFNEPQTFSSFSYGTGIFAPGRC 260
+W T NEP +YG GIFAPG C
Sbjct: 395 HWITINEPIQTCINAYGIGIFAPGLC 472
Score = 36.3 bits (73), Expect(2) = 1e-029
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3 / +2
Query: 306 EPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGIEKNVMGRVPYDNMFLDDQAQERSI 479
EP++ H+ + AHA V Y + ++ + Q+G + P + D A R I
Sbjct: 488 EPFLAGHHQILAHAAAVDVYRRKFKAKQGGQVGFVIDCEWAEPMSDKMEDQAAAARRI 661
>gb|CA008162.1|CA008162 HU10B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU10B07
5-PRIME, mRNA sequence
Length = 494
Score = 97.7 bits (207), Expect(2) = 2e-029
Identities = 39/76 (51%), Positives = 47/76 (61%)
Frame = +3 / +2
Query: 36 GIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFNEPQTF 215
G P+VT++H+D PQAL D Y G L + V DYT +A+VCF +FGD VK W T NEP
Sbjct: 2 GTRPHVTIYHFDFPQALQDEYNGMLSRKFVDDYTAYAEVCFKNFGDRVKYWSTVNEPNIE 181
Query: 216 SSFSYGTGIFAPGRCS 263
Y GI P RCS
Sbjct: 182 PIGGYDQGILPPRRCS 229
Score = 51.0 bits (105), Expect(2) = 2e-029
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3 / +2
Query: 291 GNSLTEPYIVAHNLLRAHAETVHEYNKHYRGNKDAQIGI 407
GNS TEPYIVAH+LL AHA Y + Y+ + IG+
Sbjct: 260 GNSTTEPYIVAHHLLLAHASAASLYKEKYQAKQGGNIGL 376
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 375,281,124
Number of Sequences: 312970
Number of extensions: 6887812
Number of successful extensions: 77990
Number of sequences better than 1.0e-020: 126
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7592590911
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)