TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.19
(1410 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 293 2e-081
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 288 1e-079
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 107 1e-074
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 264 1e-072
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 175 2e-072
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 189 5e-068
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 177 3e-067
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 177 5e-067
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 198 3e-066
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 228 4e-066
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 177 3e-065
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 178 6e-065
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 233 2e-063
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 233 2e-063
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 198 6e-062
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 177 1e-060
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 198 7e-058
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 178 7e-058
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 108 1e-057
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 198 2e-057
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 200 6e-057
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 108 8e-057
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 198 2e-056
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 198 6e-056
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 198 1e-055
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 198 1e-054
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 177 2e-054
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 198 2e-053
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 108 4e-053
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 108 4e-053
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 108 4e-053
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 198 4e-053
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 107 1e-052
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 112 1e-052
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 177 2e-051
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 203 2e-051
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 108 3e-051
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 182 5e-051
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 118 2e-050
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 82 4e-050
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 173 4e-050
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 100 4e-050
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 198 8e-050
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 198 8e-050
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 197 2e-049
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 177 2e-049
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 196 2e-049
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 138 3e-049
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 189 4e-049
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 195 4e-049
gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow st... 169 1e-048
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 192 4e-048
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 182 9e-048
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 118 2e-047
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 178 8e-047
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 178 8e-047
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 178 8e-047
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 177 3e-046
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 177 3e-046
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 91 4e-046
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 176 4e-046
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 185 4e-046
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 161 6e-046
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 177 9e-046
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 105 2e-045
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 122 3e-045
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 182 5e-045
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 174 6e-045
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 107 8e-045
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 138 1e-044
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 108 3e-044
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 108 3e-044
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 108 3e-044
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 108 3e-044
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 177 3e-044
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 161 7e-044
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 118 2e-043
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 168 4e-043
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 112 5e-043
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 175 6e-043
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 92 3e-042
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 125 9e-042
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 92 1e-041
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 152 2e-041
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 168 5e-041
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 105 1e-040
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 108 5e-040
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 91 6e-039
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 72 1e-038
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 72 1e-038
gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow st... 136 1e-038
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 102 7e-038
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 158 8e-038
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 157 2e-037
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 138 2e-037
gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachi... 147 6e-037
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 88 6e-037
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 96 6e-037
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 91 2e-036
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 113 4e-036
gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow st... 126 1e-035
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 82 2e-035
gb|CB884040.1|CB884040 HM11B07r HM Hordeum vulgare subsp. v... 139 4e-035
gb|BQ469285.1|BQ469285 HM03P13r HM Hordeum vulgare subsp. v... 149 5e-035
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 72 3e-034
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 81 7e-034
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 83 1e-033
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 83 1e-033
gb|BI956518.1|BI956518 HVSMEn0003O09f Hordeum vulgare rachi... 143 3e-033
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 72 3e-033
gb|CA018998.1|CA018998 HV10G08r HV Hordeum vulgare subsp. v... 86 5e-033
gb|CA019796.1|CA019796 HV13D05r HV Hordeum vulgare subsp. v... 134 5e-033
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 88 2e-031
gb|BQ753555.1|BQ753555 EBan01_SQ004_J12_R anther, yellow st... 135 5e-031
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 72 2e-030
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 131 1e-029
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 130 2e-029
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 130 2e-029
gb|BI958795.1|BI958795 HVSMEn0016K11f Hordeum vulgare rachi... 129 4e-029
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 112 1e-028
gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm librar... 82 2e-028
gb|CA004554.1|CA004554 HS17P08r HS Hordeum vulgare subsp. v... 117 2e-028
gb|BQ753440.1|BQ753440 EBan01_SQ004_E11_R anther, yellow st... 102 2e-028
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 100 2e-028
gb|BI957249.1|BI957249 HVSMEn0008G13f Hordeum vulgare rachi... 114 6e-028
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 100 1e-027
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 91 1e-027
gb|BI957226.1|BI957226 HVSMEn0008D17f Hordeum vulgare rachi... 124 1e-027
gb|CB882255.1|CB882255 HL01F14w HL Hordeum vulgare subsp. v... 115 2e-027
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 69 3e-027
gb|BQ753385.1|BQ753385 EBan01_SQ004_C01_R anther, yellow st... 96 1e-026
gb|BI956468.1|BI956468 HVSMEn0003I18f Hordeum vulgare rachi... 119 3e-026
gb|BI954215.1|BI954215 HVSMEm0016K09f Hordeum vulgare green... 117 1e-025
gb|BI958556.1|BI958556 HVSMEn0015J19f Hordeum vulgare rachi... 72 4e-025
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 87 1e-024
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 87 1e-024
gb|BU983370.1|BU983370 HA29H20r HA Hordeum vulgare subsp. v... 74 2e-024
gb|CA004842.1|CA004842 HS18N14r HS Hordeum vulgare subsp. v... 103 2e-024
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 112 5e-024
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 72 5e-024
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 111 1e-023
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 111 1e-023
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 109 3e-023
gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedl... 72 7e-021
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 293 bits (635), Expect(2) = 2e-081
Identities = 113/176 (64%), Positives = 132/176 (75%)
Frame = -3 / +2
Query: 1279 KVPPGPNITTNYNGKWLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPI 1100
KVPPGPNITTNYN W A+ATWY GIK+VNL PY+GM ACGN+PI
Sbjct: 122 KVPPGPNITTNYNMNWTPAKATWYGKATGSGPKDNGGACGIKDVNLAPYNGMIACGNIPI 301
Query: 1099 FKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLND 920
FKDGKGCGSCYEV+C + P CS P+TV+ITD NYEPIAPYH DLSGKAFG++A G
Sbjct: 302 FKDGKGCGSCYEVKCNKPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQ 481
Query: 919 KIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 752
+R G ++++FRRVRCKY G K+ FH+E G NPNYLA+LVK+VADDGDIV MEI
Sbjct: 482 TLRSFGELELQFRRVRCKYAPGTKVTFHVETGSNPNYLAILVKFVADDGDIVQMEI 649
Score = 165 bits (355), Expect(2) = 1e-042
Identities = 76/126 (60%), Positives = 83/126 (65%)
Frame = +3 / -3
Query: 783 ATYFTSTAR*LGLQPFSMWNTIFCPAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALP 962
AT TS AR* G +P S W P YL RTLLN +S P R + P A PKALP
Sbjct: 618 ATNLTSMAR*FGFEPVSTWKVTLVPGAYLQRTLLNCSSSSPNERSVCSFPAVAMAPKALP 439
Query: 963 LKSKW*GAIGS*FMSVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GG 1142
+S W GA+GS*F+SVM TV GL EH G LHLTS* EP PLPSLKMG LP A+MPL*G
Sbjct: 438 DRSMWYGAMGS*FLSVMKTVMGLSEHGGGLLHLTS*QEPHPLPSLKMGMLPQAIMPL*GA 259
Query: 1143 RFTFLI 1160
RFT LI
Sbjct: 258 RFTSLI 241
Score = 118 bits (252), Expect(3) = 8e-034
Identities = 58/136 (42%), Positives = 78/136 (57%)
Frame = -2 / +1
Query: 1160 DQEREPATLQRHDGVRQRPHXXXXXXXXXXXXGEMQGKT*VLGQSSHGVHH*HELRAYRS 981
DQ REP +LQRHD +RQ PH G++Q VL Q+ H +HH ELRA+R+
Sbjct: 241 DQGREPCSLQRHDRLRQHPHLQGRQGMRLLLRGQVQQAAAVLRQAHHRLHHRQELRAHRA 420
Query: 980 LPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQVPRRAEDRVPHREGLQPQLPGR 801
+P RQGLR G R + +R VQ+GA+QV + +P R+ L+P+LPG
Sbjct: 421 VPH*PVRQGLRRHGDGRERADAPLIRGARAAVQEGALQVRAWHQGHLPRRDRLEPKLPGH 600
Query: 800 AGEVCGGRRRHRADGN 753
+V RRRHRADG+
Sbjct: 601 TRQVRRRRRRHRADGD 648
Score = 84.5 bits (178), Expect(2) = 4e-034
Identities = 49/102 (48%), Positives = 58/102 (56%)
Frame = +2 / -2
Query: 752 DFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPGGVLASHPSELDVHDAAVANLVVEP 931
+ H HDVAVV L ++GQVV V A L VE DL VLA+HP EL + A ++ P
Sbjct: 649 NLHLHDVAVVGDELDEYGQVVWVRAGLYVEGDLGARRVLAAHPPELQLELPE*AERLLVP 470
Query: 932 GLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWIARALRFFLA 1057
G GAEGLA QV VV D LVV V D D + A R +A
Sbjct: 469 GRRHGAEGLAGQVNVVRRDGLVVLVGDEDGDGLVGARRRLVA 344
Score = 81.3 bits (171), Expect(2) = 4e-034
Identities = 32/59 (54%), Positives = 34/59 (57%)
Frame = +1 / -1
Query: 1102 WGRCRTPSCRCRVAGSRS*SXXXXXXXXXXXXWADRTRWP*R*ATCRCSWW*CWGRVAP 1278
WG CR SCRCR GSR *S W RTRWP R ++ CSWW*CWG VAP
Sbjct: 299 WGCCRRRSCRCREQGSRP*SRTRRRCLWGRSRWPCRTRWPWRGSSSCCSWW*CWGPVAP 123
Score = 40.9 bits (83), Expect(3) = 8e-034
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 1280 EGATRPQHHHQLQRQVAHR*GHL 1212
+GAT PQHHHQLQ ++ R GHL
Sbjct: 121 QGATGPQHHHQLQHELDPRQGHL 189
Score = 29.9 bits (59), Expect(2) = 2e-081
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 1323 PSLRRSSPAGRAGPR 1279
PS RRSSPA RA PR
Sbjct: 81 PSWRRSSPAARASPR 125
Score = 29.0 bits (57), Expect(2) = 1e-042
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / -2
Query: 1283 GPARPAGDERRKDG 1324
G AR AGDERR+DG
Sbjct: 121 GDARAAGDERRQDG 80
Score = 23.5 bits (45), Expect(3) = 8e-034
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 1200 PTVPALLTTAVRAGS 1156
P PA TTA RAGS
Sbjct: 201 PPAPAPKTTAARAGS 245
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 288 bits (623), Expect(2) = 1e-079
Identities = 110/172 (63%), Positives = 129/172 (75%)
Frame = -3 / +2
Query: 1279 KVPPGPNITTNYNGKWLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPI 1100
KVPPGPNITTNYN W A+ATWY GIK+VNL PY+GM ACGN+PI
Sbjct: 101 KVPPGPNITTNYNMNWTPAKATWYGKATGSGPKDNGGACGIKDVNLAPYNGMIACGNIPI 280
Query: 1099 FKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLND 920
FKDGKGCGSCYEV+C + P CS P+TV+ITD NYEPIAPYH DLSGKAFG++A G
Sbjct: 281 FKDGKGCGSCYEVKCNKPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQ 460
Query: 919 KIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIV 764
+R G ++++FRRVRCKY G K+ FH+E G NPNYLA+LVK+VADDGDIV
Sbjct: 461 TLRSFGELELQFRRVRCKYAPGTKVTFHVETGSNPNYLAILVKFVADDGDIV 616
Score = 165 bits (355), Expect(2) = 1e-042
Identities = 76/126 (60%), Positives = 83/126 (65%)
Frame = +3 / -2
Query: 783 ATYFTSTAR*LGLQPFSMWNTIFCPAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALP 962
AT TS AR* G +P S W P YL RTLLN +S P R + P A PKALP
Sbjct: 597 ATNLTSMAR*FGFEPVSTWKVTLVPGAYLQRTLLNCSSSSPNERSVCSFPAVAMAPKALP 418
Query: 963 LKSKW*GAIGS*FMSVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GG 1142
+S W GA+GS*F+SVM TV GL EH G LHLTS* EP PLPSLKMG LP A+MPL*G
Sbjct: 417 DRSMWYGAMGS*FLSVMKTVMGLSEHGGGLLHLTS*QEPHPLPSLKMGMLPQAIMPL*GA 238
Query: 1143 RFTFLI 1160
RFT LI
Sbjct: 237 RFTSLI 220
Score = 110 bits (235), Expect(3) = 2e-031
Identities = 55/132 (41%), Positives = 74/132 (56%)
Frame = -2 / +1
Query: 1160 DQEREPATLQRHDGVRQRPHXXXXXXXXXXXXGEMQGKT*VLGQSSHGVHH*HELRAYRS 981
DQ REP +LQRHD +RQ PH G++Q VL Q+ H +HH ELRA+R+
Sbjct: 220 DQGREPCSLQRHDRLRQHPHLQGRQGMRLLLRGQVQQAAAVLRQAHHRLHHRQELRAHRA 399
Query: 980 LPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQVPRRAEDRVPHREGLQPQLPGR 801
+P RQGLR G R + +R VQ+GA+QV + +P R+ L+P+LPG
Sbjct: 400 VPH*PVRQGLRRHGDGRERADAPLIRGARAAVQEGALQVRAWHQGHLPRRDRLEPKLPGH 579
Query: 800 AGEVCGGRRRHR 765
+V RRRHR
Sbjct: 580 TRQVRRRRRRHR 615
Score = 85.4 bits (180), Expect(2) = 2e-034
Identities = 49/98 (50%), Positives = 57/98 (58%)
Frame = +2 / -1
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLPGGVLASHPSELDVHDAAVANLVVEPGLCQ 943
HDVAVV L ++GQVV V A LDVE DL VLA+HP EL + A ++ PG
Sbjct: 616 HDVAVVGDELDEYGQVVWVRAGLDVEGDLGARRVLAAHPPELQLELPE*AERLLVPGRRH 437
Query: 944 GAEGLAAQVEVVGSDRLVVHVSDVHRDWIARALRFFLA 1057
GAEGLA QV VV D LVV V D D + A R +A
Sbjct: 436 GAEGLAGQVNVVRRDGLVVLVGDEDGDGLVGARRRLVA 323
Score = 81.3 bits (171), Expect(2) = 2e-034
Identities = 32/59 (54%), Positives = 34/59 (57%)
Frame = +1 / -3
Query: 1102 WGRCRTPSCRCRVAGSRS*SXXXXXXXXXXXXWADRTRWP*R*ATCRCSWW*CWGRVAP 1278
WG CR SCRCR GSR *S W RTRWP R ++ CSWW*CWG VAP
Sbjct: 278 WGCCRRRSCRCREQGSRP*SRTRRRCLWGRSRWPCRTRWPWRGSSSCCSWW*CWGPVAP 102
Score = 40.9 bits (83), Expect(3) = 2e-031
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 1280 EGATRPQHHHQLQRQVAHR*GHL 1212
+GAT PQHHHQLQ ++ R GHL
Sbjct: 100 QGATGPQHHHQLQHELDPRQGHL 168
Score = 29.9 bits (59), Expect(2) = 1e-079
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 1323 PSLRRSSPAGRAGPR 1279
PS RRSSPA RA PR
Sbjct: 60 PSWRRSSPAARASPR 104
Score = 29.0 bits (57), Expect(2) = 1e-042
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / -1
Query: 1283 GPARPAGDERRKDG 1324
G AR AGDERR+DG
Sbjct: 100 GDARAAGDERRQDG 59
Score = 23.5 bits (45), Expect(3) = 2e-031
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 1200 PTVPALLTTAVRAGS 1156
P PA TTA RAGS
Sbjct: 180 PPAPAPKTTAARAGS 224
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 107 bits (228), Expect(5) = 1e-074
Identities = 39/62 (62%), Positives = 51/62 (82%)
Frame = -3 / +2
Query: 1045 PECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCK 866
P CSG P TV ITDMNY P++ +HFDLSG AFG++AK G N+++RH GI+D++FRRV C+
Sbjct: 233 PACSGVPETVIITDMNYYPVSRFHFDLSGTAFGAMAKDGRNEELRHAGIIDMQFRRVPCQ 412
Query: 865 YP 860
YP
Sbjct: 413 YP 418
Score = 92.3 bits (195), Expect(5) = 1e-074
Identities = 31/60 (51%), Positives = 46/60 (76%)
Frame = -3 / +2
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQ 560
+ EW PM SWG+IWRMDT + ++GPFS+R+T+ESGK ++A V P +W P+ +Y+S +Q
Sbjct: 572 TGEWVPMTESWGSIWRMDTRRPMQGPFSLRITNESGKTLVADQVNPGDWEPNEIYSSFIQ 751
Score = 84.9 bits (179), Expect(4) = 6e-044
Identities = 38/63 (60%), Positives = 43/63 (68%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN SMMP R SL P A PKA+PL+SKW G *FMSVM TV+G PEH
Sbjct: 417 GYWHGTLLNCMSMMPACRSSSLRPSLAMAPKAVPLRSKWKRDTG**FMSVMITVSGTPEH 238
Query: 1041 SGF 1049
+G+
Sbjct: 237 AGW 229
Score = 82.2 bits (173), Expect(5) = 1e-074
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 116 KNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRC 217
Score = 65.7 bits (137), Expect(4) = 6e-044
Identities = 31/58 (53%), Positives = 36/58 (62%)
Frame = +3 / -3
Query: 561 WTLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFHS 734
W E+* + G Q G+T A + LPDSLV R EKGP VSI QM PQ+S MG HS
Sbjct: 750 WMKEL*ISLGSQSPGLTWSATSVLPDSLVMRSEKGPCMGRRVSIRQMEPQDSVMGTHS 577
Score = 64.8 bits (135), Expect(4) = 2e-026
Identities = 32/53 (60%), Positives = 34/53 (64%)
Frame = +2 / -2
Query: 863 VLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHR 1021
VLA HPSEL V DA V L V L GAEG AA+VEV R+VVHV D HR
Sbjct: 415 VLARHPSELHVDDAGVPELFVAAVLGHGAEGGAAEVEVEAGHRVVVHVRDDHR 257
Score = 60.2 bits (125), Expect(3) = 6e-021
Identities = 29/60 (48%), Positives = 35/60 (58%)
Frame = -2 / +1
Query: 1040 VLGQSSHGVHH*HELRAYRSLPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQVP 861
VL ++ G HH HEL LPLR +R LR G+ R QR+ RHH VQKGA+ VP
Sbjct: 238 VLRRAGDGDHHGHELLPGVPLPLRPQRHRLRRHGQGRPQRRAPARRHHRHAVQKGAVPVP 417
Score = 51.5 bits (106), Expect(3) = 6e-021
Identities = 24/57 (42%), Positives = 29/57 (50%)
Frame = -2 / +1
Query: 731 VEAHEALLGRHLEDGHCQGAQGPLLHPPHQRVRQEGHRQRRHPGELETRCRLHFQRP 561
V AH+ +LG HL DGH GPLL HQRVRQ+ R+ L + L P
Sbjct: 580 VGAHDRVLGLHLADGHTAPHAGPLLAAHHQRVRQDARRRPGQSRRLGAQRNLQLLHP 750
Score = 48.7 bits (100), Expect(4) = 6e-044
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -3
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
H * EPQPLPSLK G+LP VM GGR TFL
Sbjct: 216 HRIW*QEPQPLPSLKSGSLPQEVMAEKGGRLTFL 115
Score = 48.3 bits (99), Expect(4) = 2e-026
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +2 / -2
Query: 1124 HAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEP 1234
H GWQV VL+PA AVV G +G VPG P EP
Sbjct: 148 HGGEGWQVDVLEPAGAAVVVWPGAIGRAVPGRPGVEP 38
Score = 44.1 bits (90), Expect(5) = 1e-074
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDI 767
G + FH++ G NP YLA+LV+Y DGD+
Sbjct: 419 GLTVTFHVQHGSNPYYLAILVEYENGDGDV 508
Score = 35.4 bits (71), Expect(4) = 6e-044
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2 / -2
Query: 758 HQHDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ GQVVGV +L VE P
Sbjct: 517 HLVHVAVAVLVLHQDGQVVGVGTVLHVERHRQP 419
Score = 33.1 bits (66), Expect(4) = 2e-026
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 685 CPSSRWRPKRASWAST 732
CPS+RW P+ SWA T
Sbjct: 626 CPSARWSPRTRSWAPT 579
Score = 33.1 bits (66), Expect(3) = 6e-021
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2 / +1
Query: 1157 QEREPATLQRHDGVRQR 1107
QER+PATL RHD +RQR
Sbjct: 115 QERQPATLLRHDLLRQR 165
Score = 30.4 bits (60), Expect(5) = 1e-074
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3 / +2
Query: 1255 TTNYNGKWLTARATWY 1208
+TN + WL ARATWY
Sbjct: 17 STNVDAGWLDARATWY 64
Score = 28.6 bits (56), Expect(4) = 2e-026
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1 / -1
Query: 733 QPTTCPGFPSARCRRRPPHTSPARPGSWGCSPSRCGTRSSA 855
+P P RRR T P PGS G + + GT SA
Sbjct: 542 RPAATASCPPGPRRRRRSRTPPGWPGSRGWNRAARGTSPSA 420
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 264 bits (571), Expect(2) = 1e-072
Identities = 100/161 (62%), Positives = 118/161 (73%)
Frame = -3 / +3
Query: 1279 KVPPGPNITTNYNGKWLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPI 1100
KVPPGPNITTNYN W A+ATWY GIK+VNL PY+GM ACGN+PI
Sbjct: 132 KVPPGPNITTNYNMNWTPAKATWYGKATGSGPKDNGGACGIKDVNLAPYNGMIACGNIPI 311
Query: 1099 FKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLND 920
FKDGKGCGSCYEV+C + P CS P+TV+ITD NYEPIAPYH DLSGKAFG++A G
Sbjct: 312 FKDGKGCGSCYEVKCNKPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQ 491
Query: 919 KIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVL 797
+R G ++++FRRVRCKY G K+ FH+E G NPNYLA+L
Sbjct: 492 TLRSFGELELQFRRVRCKYAPGTKVTFHVETGSNPNYLAIL 614
Score = 162 bits (348), Expect(2) = 1e-041
Identities = 74/122 (60%), Positives = 81/122 (66%)
Frame = +3 / -1
Query: 795 TSTAR*LGLQPFSMWNTIFCPAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSK 974
TS AR* G +P S W P YL RTLLN +S P R + P A PKALP +S
Sbjct: 616 TSMAR*FGFEPVSTWKVTLVPGAYLQRTLLNCSSSSPNERSVCSFPAVAMAPKALPDRSM 437
Query: 975 W*GAIGS*FMSVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTF 1154
W GA+GS*F+SVM TV GL EH G LHLTS* EP PLPSLKMG LP A+MPL*G RFT
Sbjct: 436 WYGAMGS*FLSVMKTVMGLSEHGGGLLHLTS*QEPHPLPSLKMGMLPQAIMPL*GARFTS 257
Query: 1155 LI 1160
LI
Sbjct: 256 LI 251
Score = 99.1 bits (210), Expect(3) = 4e-028
Identities = 49/119 (41%), Positives = 67/119 (56%)
Frame = -2 / +2
Query: 1160 DQEREPATLQRHDGVRQRPHXXXXXXXXXXXXGEMQGKT*VLGQSSHGVHH*HELRAYRS 981
DQ REP +LQRHD +RQ PH G++Q VL Q+ H +HH ELRA+R+
Sbjct: 251 DQGREPCSLQRHDRLRQHPHLQGRQGMRLLLRGQVQQAAAVLRQAHHRLHHRQELRAHRA 430
Query: 980 LPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQVPRRAEDRVPHREGLQPQLPG 804
+P RQGLR G R + +R VQ+GA+QV + +P R+ L+P+LPG
Sbjct: 431 VPH*PVRQGLRRHGDGRERADAPLIRGARAAVQEGALQVRAWHQGHLPRRDRLEPKLPG 607
Score = 81.3 bits (171), Expect(2) = 1e-030
Identities = 32/59 (54%), Positives = 34/59 (57%)
Frame = +1 / -2
Query: 1102 WGRCRTPSCRCRVAGSRS*SXXXXXXXXXXXXWADRTRWP*R*ATCRCSWW*CWGRVAP 1278
WG CR SCRCR GSR *S W RTRWP R ++ CSWW*CWG VAP
Sbjct: 309 WGCCRRRSCRCREQGSRP*SRTRRRCLWGRSRWPCRTRWPWRGSSSCCSWW*CWGPVAP 133
Score = 73.0 bits (153), Expect(2) = 1e-030
Identities = 42/87 (48%), Positives = 50/87 (57%)
Frame = +2 / -3
Query: 797 QHGQVVGVAALLDVEHDLLPGGVLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEV 976
++GQVV V A LDVE DL VLA+HP EL + A ++ PG GAEGLA QV V
Sbjct: 614 EYGQVVWVRAGLDVEGDLGARRVLAAHPPELQLELPE*AERLLVPGRRHGAEGLAGQVNV 435
Query: 977 VGSDRLVVHVSDVHRDWIARALRFFLA 1057
V D LVV V D D + A R +A
Sbjct: 434 VRRDGLVVLVGDEDGDGLVGARRRLVA 354
Score = 40.9 bits (83), Expect(3) = 4e-028
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2 / +2
Query: 1280 EGATRPQHHHQLQRQVAHR*GHL 1212
+GAT PQHHHQLQ ++ R GHL
Sbjct: 131 QGATGPQHHHQLQHELDPRQGHL 199
Score = 29.9 bits (59), Expect(2) = 1e-072
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1 / +1
Query: 1323 PSLRRSSPAGRAGPR 1279
PS RRSSPA RA PR
Sbjct: 91 PSWRRSSPAARASPR 135
Score = 29.0 bits (57), Expect(2) = 1e-041
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / -3
Query: 1283 GPARPAGDERRKDG 1324
G AR AGDERR+DG
Sbjct: 131 GDARAAGDERRQDG 90
Score = 23.5 bits (45), Expect(3) = 4e-028
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +1
Query: 1200 PTVPALLTTAVRAGS 1156
P PA TTA RAGS
Sbjct: 211 PPAPAPKTTAARAGS 255
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 175 bits (377), Expect(3) = 2e-072
Identities = 62/92 (67%), Positives = 77/92 (83%)
Frame = -3 / +1
Query: 1135 YSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGK 956
++ MT+CGN P+FKDGKGCGSCY++RC++ CSG TV ITDMNY P+APYHFDLSG
Sbjct: 1 FASMTSCGNQPLFKDGKGCGSCYKIRCRKDQSCSGRTETVIITDMNYYPVAPYHFDLSGT 180
Query: 955 AFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
AFG LAKPGLND++RH GI+D+EF RV C++P
Sbjct: 181 AFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFP 276
Score = 127 bits (272), Expect(3) = 1e-043
Identities = 58/89 (65%), Positives = 63/89 (70%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H T +NS SMMP+WR LSLSPGFA P A+PL+SKW*GA G *FMSVM TV+ LPE
Sbjct: 275 GNSHGTRVNSMSMMPEWRSLSLSPGFASLPNAVPLRSKW*GATG**FMSVMITVSVLPEQ 96
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVM 1127
LHL *HEP PLPSL G LP VM
Sbjct: 95 DWSFLHLIL*HEPHPLPSLNNGWLPQEVM 9
Score = 90.9 bits (192), Expect(3) = 2e-072
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = -3 / +1
Query: 763 LMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPD 584
LME + +W M+ SWG++WR+D+ L+ PFSIR+ +ESGK ++A VIPANWRP+
Sbjct: 379 LMESRGPGGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPN 558
Query: 583 AVYTSNVQF 557
Y S VQ+
Sbjct: 559 TFYRSFVQY 585
Score = 81.7 bits (172), Expect(4) = 7e-024
Identities = 36/52 (69%), Positives = 39/52 (75%)
Frame = +2 / -1
Query: 866 LASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHR 1021
LA HP ELDV DA VA VVEPGLC+ AE AA+VEVVG R+VVHV D HR
Sbjct: 270 LARHPCELDVDDAGVAEPVVEPGLCEPAERCAAEVEVVGRHRVVVHVGDDHR 115
Score = 72.1 bits (151), Expect(3) = 1e-026
Identities = 34/67 (50%), Positives = 41/67 (61%)
Frame = -2 / +3
Query: 1061 EMQGKT*VLGQSSHGVHH*HELRAYRSLPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQ 882
+MQ +L Q G HH HEL +LPLR +R +R KARAQRQ PLRHH RV
Sbjct: 75 QMQEGPILLRQDGDGDHHRHELLPGGALPLRPQRHSVRQARKARAQRQAPPLRHHRHRVH 254
Query: 881 KGAMQVP 861
GA++VP
Sbjct: 255 TGAVRVP 275
Score = 51.5 bits (106), Expect(3) = 1e-026
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = -2 / +3
Query: 731 VEAHEALLGRHLEDGHCQGAQGPLLHPPHQRVRQEGHRQRRHPGELETRCRLHFQRPILL 552
V+ E ++G L G +LHP QRVRQ+ RQ+ HPG+LE + L R + L
Sbjct: 411 VDEDEGVVGLRLAPRLQPPPPGAILHPHPQRVRQDARRQQGHPGQLEAQHLLPLLRAVQL 590
Query: 551 DFEFPS 534
+PS
Sbjct: 591 KSLYPS 608
Score = 46.4 bits (95), Expect(3) = 2e-072
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G KI FH+E+ NP Y AVLV+Y DGD+V +++ +
Sbjct: 277 GLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLME 387
Score = 46.0 bits (94), Expect(3) = 1e-043
Identities = 26/56 (46%), Positives = 29/56 (51%)
Frame = +3 / -2
Query: 564 TLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
T E * GLQ AGMT LA + LPDSL RME G S Q P +S + H
Sbjct: 578 TKER*KVLGLQLAGMTLLATSVLPDSLRMRMENGAWRRWLESRRQTEPHDSLILVH 411
Score = 42.3 bits (86), Expect(3) = 1e-043
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +2 / -1
Query: 752 DFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
+ H H VAV +LHQH +V GV LL VE DL P
Sbjct: 381 EVHLHHVAVAVLVLHQHREVDGVRVLLHVEPDLEP 277
Score = 34.5 bits (69), Expect(3) = 1e-026
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -2 / +3
Query: 854 AEDRVPHREGLQPQLPGRAGEVCGGRRRHRADGNPG 747
A+DRVP L+P+L AG V G RRR A G G
Sbjct: 279 AQDRVPRGGVLEPRLLRGAGGVRGRRRRRGAGGPHG 386
Score = 29.9 bits (59), Expect(4) = 7e-024
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3 / -2
Query: 783 ATYFTSTAR*LGLQPFSMWNTIFCP 857
++Y TSTA+* G + S WN I P
Sbjct: 350 SSYSTSTAK*TGFEYSSTWNPILSP 276
Score = 28.1 bits (55), Expect(4) = 7e-024
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2 / -1
Query: 560 LDVGSVDGIGSPVRRDDV 613
L G+V+G+G PV RDD+
Sbjct: 582 LHEGAVEGVGPPVGRDDL 529
Score = 26.3 bits (51), Expect(4) = 7e-024
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2 / -1
Query: 686 VHPPDGAPRELHGLPLS 736
V PDGAPR H PLS
Sbjct: 456 VEAPDGAPRLPHPRPLS 406
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0005E06f,
mRNA sequence
Length = 796
Score = 189 bits (407), Expect(2) = 5e-068
Identities = 72/125 (57%), Positives = 87/125 (69%)
Frame = -3 / +1
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S M GN PIFKDGKGCGSCY++RC
Sbjct: 67 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMGGGGNXPIFKDGKGCGSCYQIRC 246
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 247 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 426
Query: 874 RCKYP 860
C++P
Sbjct: 427 PCEFP 441
Score = 108 bits (231), Expect(2) = 3e-031
Identities = 55/99 (55%), Positives = 60/99 (60%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 440 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 261
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG LP M G FL
Sbjct: 260 DWSLVHRIW*QEPHPLPSLKMGXLPPPPMEEKGYWLVFL 144
Score = 90.0 bits (190), Expect(2) = 5e-068
Identities = 33/78 (42%), Positives = 51/78 (65%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 677
G K+ FH+E+G NP Y AVLV+Y DGD+V +++ + S W PM+ SWG+I R+D+
Sbjct: 442 GLKVTFHVEQGSNPVYFAVLVEYXDGDGDMVQVDLMEANSCTWTPMRESWGSILRLDSGH 621
Query: 676 ALKGPFSIRLTSESGKKV 623
+ P S L +E G+++
Sbjct: 622 GWRPPLSFALXNEGGREL 675
Score = 64.8 bits (135), Expect(3) = 1e-024
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2 / -2
Query: 866 LASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWIARA 1039
LA H ELDV DA V L+ E GL GAE A QVEVV +R+VVHV D HR +A A
Sbjct: 435 LARHSLELDVDDAGVPELLAEAGLGHGAERGATQVEVVLGNRVVVHVGDDHRLRVAGA 262
Score = 47.3 bits (97), Expect(2) = 3e-031
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2 / -2
Query: 686 VHPPDGAPRELHGLPLSRQLVLDFHQHDVAVVRHILHQHGQVVGVAALLDVEHDL 850
V P D +PR H P + + + H H VAV +LHQHG+V V LL VE L
Sbjct: 612 VQPQD*SPRLAHRRPRTGVGLHEVHLHHVAVAVXVLHQHGEVHRVRPLLHVEGHL 448
Score = 46.9 bits (96), Expect(3) = 1e-024
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = +2 / -2
Query: 1124 HAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPL 1237
H G V VL+PART VV AGT G VPGGP P+
Sbjct: 177 HGGEGVLVGVLEPARTTVVHGAGTRGRAVPGGPGVLPV 64
Score = 40.0 bits (81), Expect(3) = 1e-024
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = +3 / -3
Query: 630 LPDSLVRRMEKGPLSALAVSILQMAPQESFMGFHSADNLXXXXXXXXXXXXATYFTSTAR 809
LP S + +KG L S ++ P +S +G H + ++Y TSTA+
Sbjct: 668 LPPSXLNANDKGGLQPCPESSRKIDPHDSRIGVHVQELASMRSTCTMSPSPSSYSTSTAK 489
Query: 810 *LGLQPFSMWNTIFCP 857
G P S W P
Sbjct: 488 YTGFDPCSTWKVTLRP 441
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 177 bits (381), Expect(4) = 3e-067
Identities = 63/99 (63%), Positives = 79/99 (79%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
KNVN P+ MT+CGN P+FKDGKGCG+CY+++C + CSG TV ITDMNY P+APY
Sbjct: 97 KNVNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMNYYPVAPY 276
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 277 HFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 393
Score = 123 bits (264), Expect(4) = 1e-042
Identities = 59/99 (59%), Positives = 67/99 (67%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 392 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 213
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+ +HL *H PQPLPSL G LP VM + G RFTFL
Sbjct: 212 ALCFVHLIL*HAPQPLPSLNSGWLPQEVMAMNGYRFTFL 96
Score = 65.7 bits (137), Expect(4) = 3e-067
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = -3 / +1
Query: 730 WKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIP 602
W M+ SWG+IWR+D+ L+ PFSIR+ +ESGK ++A++VIP
Sbjct: 535 WTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIP 663
Score = 46.9 bits (96), Expect(4) = 3e-067
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G N Y+A+LV+Y DGD+V +++ +
Sbjct: 394 GLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 504
Score = 43.7 bits (89), Expect(4) = 1e-042
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / -1
Query: 1145 VHVLDPARTAVVRSAGTVGLTVPGGP 1222
VHVL+PA AVV AG VG VPGGP
Sbjct: 108 VHVLEPASAAVVVGAGAVGRAVPGGP 31
Score = 35.4 bits (71), Expect(4) = 1e-042
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3 / -2
Query: 597 FAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
F GMT A + PDSL RME G S QM P +S + H
Sbjct: 668 FXGMTLRATSVXPDSLRMRMENGAWRRWLESRRQMDPHDSRIRVH 534
Score = 27.6 bits (54), Expect(4) = 1e-042
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2 / -1
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ V V LL VE L P
Sbjct: 486 HHVAVAVLVLHQDRHVHRVGPLLHVEPHLQP 394
Score = 23.5 bits (45), Expect(4) = 3e-067
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 1200 PTVPALLTTAVRAGS 1156
PT PA TTA AGS
Sbjct: 53 PTAPAPTTTAALAGS 97
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 177 bits (381), Expect(3) = 5e-067
Identities = 63/99 (63%), Positives = 79/99 (79%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
KNVN P+ MT+CGN P+FKDGKGCG+CY+++C + CSG TV ITDMNY P+APY
Sbjct: 41 KNVNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMNYYPVAPY 220
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 221 HFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 337
Score = 123 bits (264), Expect(4) = 1e-038
Identities = 59/99 (59%), Positives = 67/99 (67%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 336 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 157
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+ +HL *H PQPLPSL G LP VM + G RFTFL
Sbjct: 156 ALCFVHLIL*HAPQPLPSLNSGWLPQEVMAMNGYRFTFL 40
Score = 70.3 bits (147), Expect(3) = 5e-067
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = -3 / +2
Query: 730 WKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSN 566
W M+ SWG IWR+D+ L+ PFSIR+ +ESG+ ++A+ VIP RP+ +Y S+
Sbjct: 479 WTRMRESWGFIWRLDSNHRLQAPFSIRIRNESGQTLVAR*VIPKKGRPNTLYCSS 643
Score = 46.9 bits (96), Expect(3) = 5e-067
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G N Y+A+LV+Y DGD+V +++ +
Sbjct: 338 GLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 448
Score = 38.6 bits (78), Expect(4) = 1e-038
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +3 / -1
Query: 588 GLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
GL F GMT A + PDSL RME G S QM P +S + H
Sbjct: 621 GLPFLGMT*RATSVCPDSLRMRMENGACRRWLESRRQMNPHDSRIRVH 478
Score = 27.6 bits (54), Expect(4) = 1e-038
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2 / -3
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ V V LL VE L P
Sbjct: 430 HHVAVAVLVLHQDRHVHRVGPLLHVEPHLQP 338
Score = 26.3 bits (51), Expect(4) = 1e-038
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / -3
Query: 1145 VHVLDPARTAVVRSAG 1192
VHVL+PA AVV AG
Sbjct: 52 VHVLEPASAAVVVGAG 5
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018F10f,
mRNA sequence
Length = 669
Score = 198 bits (426), Expect(3) = 3e-066
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 84 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 263
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 264 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 443
Query: 874 RCKYP 860
C++P
Sbjct: 444 PCEFP 458
Score = 116 bits (247), Expect(3) = 1e-032
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 457 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 278
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 277 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 161
Score = 64.8 bits (135), Expect(3) = 5e-022
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2 / -2
Query: 866 LASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWIARA 1039
LA H ELDV DA V L+ E GL GAE A QVEVV +R+VVHV D HR +A A
Sbjct: 452 LARHSLELDVDDAGVPELLAEAGLGHGAERGATQVEVVLGNRVVVHVGDDHRLRVAGA 279
Score = 55.6 bits (115), Expect(3) = 3e-066
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEW 728
G K+ FH+E+G NP Y AVLV+Y DGD+V +++ + S W
Sbjct: 459 GLKVTFHVEQGSNPVYFAVLVEYEDGDGDLVQVDLMEANSGTW 587
Score = 47.8 bits (98), Expect(3) = 5e-022
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = +2 / -2
Query: 1118 RRHAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPL 1237
R H G V VL+PART VV AGT G VPGGP P+
Sbjct: 200 RCHGGEGVLVGVLEPARTTVVHGAGTRGRAVPGGPGVLPV 81
Score = 38.6 bits (78), Expect(3) = 3e-066
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -3 / +1
Query: 724 PMKLSWGAIWRMDTAKALKGPFSI 653
PM+ SWG+IWR+++ L+ PFS+
Sbjct: 592 PMRESWGSIWRVESGHRLQAPFSM 663
Score = 38.6 bits (78), Expect(3) = 1e-032
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2 / -2
Query: 722 GLPLSRQLVLDFHQHDVAVVRHILHQHGQVVGVAALLDVEHDL 850
G+P + + + H H VAV +LHQHG+V V LL VE L
Sbjct: 593 GVPRTGVGLHEVHLHQVAVAVLVLHQHGEVHRVRPLLHVEGHL 465
Score = 29.9 bits (59), Expect(3) = 5e-022
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1 / -1
Query: 706 PKRASWASTQPTTCPGFPSARCRRRPPHTSPARPGSWGCSPSRCG 840
P+ A T + P P A RRR P T PAR + G +P+ G
Sbjct: 609 PRFAHRRPTYRSWPP*GPPAPSRRRRPRTPPARRSTPGSTPAPRG 475
Score = 24.0 bits (46), Expect(3) = 1e-032
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2 / -1
Query: 689 HPPDGAPRELHGLPLSR 739
HPPD +PR H P R
Sbjct: 627 HPPD*SPRFAHRRPTYR 577
>gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D03 5', mRNA sequence
Length = 677
Score = 228 bits (492), Expect(2) = 4e-066
Identities = 84/152 (55%), Positives = 114/152 (75%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K V+ P+ GMT+CGNVPIFKD +GCGSC+E++C + CSG P V ITD N EPIA Y
Sbjct: 221 KEVDKAPFFGMTSCGNVPIFKDSRGCGSCFELKCTKPGACSGEPTIVTITDKNEEPIAAY 400
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVL 797
HFDLSG AFG++AK G K+R G ++++FRRV+CKYP G K+ FH+EKG +PNYLA++
Sbjct: 401 HFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKYPEGTKVNFHVEKGSSPNYLALV 580
Query: 796 VKYVADDGDIVLMEIQDKLSAEWKPMKLSWGA 701
+K++ DGD+V ++I+ K +W +K SWGA
Sbjct: 581 IKFLQGDGDVVAVDIKPKGKDKWIELKESWGA 676
Score = 123 bits (264), Expect = 2e-027
Identities = 61/118 (51%), Positives = 70/118 (59%)
Frame = +3 / -3
Query: 804 AR*LGLQPFSMWNTIFCPAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*G 983
AR*LGL+PFS W P+GYLH T N S P R P A PKA P +SKW
Sbjct: 573 AR*LGLEPFSTWKFTLVPSGYLHLTRRNLISTSPASRSFCSWPFLAMVPKAWPDRSKWYA 394
Query: 984 AIGS*FMSVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
A+GS F+SVM T+ G PE + +HL+S EPQP SLKMGTLP VMP G T L
Sbjct: 393 AMGSSFLSVMVTMVGSPEQAPGLVHLSSKQEPQPRLSLKMGTLPQEVMPKKGALSTSL 220
Score = 87.2 bits (184), Expect(3) = 1e-022
Identities = 51/104 (49%), Positives = 59/104 (56%)
Frame = +2 / -2
Query: 701 GAPRELHGLPLSRQLVLDFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPGGVLASHP 880
G+PR L PL L LD H H VAV L G+VVG A L VE L VLA
Sbjct: 676 GSPRLLELDPLVLALGLDVHGHHVAVALEELDHQGEVVGAGAFLHVEVHLGALRVLALDA 497
Query: 881 SELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSD 1012
+ELD+H A VA L++ L GAEG+A QVEVV D L+V V D
Sbjct: 496 AELDLHLAGVAQLLLLALLGHGAEGMAGQVEVVRRDGLLVLVGD 365
Score = 44.6 bits (91), Expect(2) = 4e-066
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -3 / +2
Query: 1288 GPPKVPPGPNITTNYNGKWLTARATWY 1208
G KVP GPNIT NY +W A+ TWY
Sbjct: 89 GIAKVPCGPNITANYVSEWKDAKTTWY 169
Score = 30.4 bits (60), Expect(3) = 1e-022
Identities = 21/61 (34%), Positives = 23/61 (37%)
Frame = +2 / -2
Query: 1124 HAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPLXXXXXXXXXXXWHLRGPARPAG 1303
HA G VH+L PA AVV G L VP PL +L R A
Sbjct: 253 HAEEGGLVHLLVPAGAAVVLGPGARRLAVPRRLGVFPLADVVRRDVGATGNLGDAVRAAH 74
Query: 1304 D 1306
D
Sbjct: 73 D 71
Score = 27.2 bits (53), Expect(3) = 1e-022
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 1102 WGRCRTPSCRCR 1137
WGRCR SCR R
Sbjct: 275 WGRCRRRSCRRR 240
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 177 bits (381), Expect(5) = 3e-065
Identities = 63/99 (63%), Positives = 79/99 (79%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
KNVN P+ MT+CGN P+FKDGKGCG+CY+++C + CSG TV ITDMNY P+APY
Sbjct: 214 KNVNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMNYYPVAPY 393
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 394 HFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 510
Score = 123 bits (264), Expect(4) = 4e-040
Identities = 59/99 (59%), Positives = 67/99 (67%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 509 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 330
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+ +HL *H PQPLPSL G LP VM + G RFTFL
Sbjct: 329 ALCFVHLIL*HAPQPLPSLNSGWLPQEVMAMNGYRFTFL 213
Score = 55.1 bits (114), Expect(5) = 3e-065
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = -3 / +3
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDV 608
+ W M SWG+IW +D+ L+ P SIR+ +ESGKK+ A++V
Sbjct: 645 AGRWTRMPESWGSIWGLDSXNRLQXPXSIRIRNESGKKLXARNV 776
Score = 46.9 bits (96), Expect(5) = 3e-065
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G N Y+A+LV+Y DGD+V +++ +
Sbjct: 511 GLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 621
Score = 43.7 bits (89), Expect(4) = 4e-040
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / -3
Query: 1145 VHVLDPARTAVVRSAGTVGLTVPGGP 1222
VHVL+PA AVV AG VG VPGGP
Sbjct: 225 VHVLEPASAAVVVGAGAVGRAVPGGP 148
Score = 27.6 bits (54), Expect(4) = 4e-040
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2 / -3
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ V V LL VE L P
Sbjct: 603 HHVAVAVLVLHQDRHVHRVGPLLHVEPHLQP 511
Score = 26.7 bits (52), Expect(4) = 4e-040
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3 / -2
Query: 609 TSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
T A +F PDSL RM G S QM P +S H
Sbjct: 775 TLRAXSFXPDSLRMRMXNGXWRRXLESRPQMDPHDSGXRVH 653
Score = 23.5 bits (45), Expect(5) = 3e-065
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 1200 PTVPALLTTAVRAGS 1156
PT PA TTA AGS
Sbjct: 170 PTAPAPTTTAALAGS 214
Score = 22.1 bits (42), Expect(5) = 3e-065
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 1262 QHHHQLQRQVAHR*GHL 1212
Q H ++ R V R GHL
Sbjct: 108 QRHRRVHRAVGRRPGHL 158
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 178 bits (384), Expect(3) = 6e-065
Identities = 66/99 (66%), Positives = 80/99 (80%)
Frame = -3 / +3
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K+VN P+S MT+CGN P+FKDGKGCGSCY++RC CSGN TV ITDMNY P+A Y
Sbjct: 267 KHVNQYPFSSMTSCGNQPLFKDGKGCGSCYQIRCSGDRSCSGNIETVMITDMNYYPVAQY 446
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG+LAK GLN+K+RH GI+D++FRRV C +P
Sbjct: 447 HFDLSGTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFP 563
Score = 117 bits (251), Expect(2) = 7e-036
Identities = 58/99 (58%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G LH TLLN SMMP+WR SL P AR PKA+PL+SKW A G *FMSV+ TV+ LPE
Sbjct: 562 GKLHGTLLNWMSMMPEWRSFSLRPDLARAPKAVPLRSKWYWATG**FMSVIITVSMLPEQ 383
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
LH * EPQPLPSL G LP VM G FT L
Sbjct: 382 ERSPLHRIW*QEPQPLPSLNRGWLPQEVMEEKGYWFTCL 266
Score = 108 bits (231), Expect(2) = 3e-029
Identities = 59/128 (46%), Positives = 67/128 (52%)
Frame = +2 / -2
Query: 851 LPGGVLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWI 1030
L G +A HP ELDV DA VA L+VE L QGAEG AAQV+VV DR+VVHV D HR +
Sbjct: 572 LEAGEVARHPPELDVDDARVAELLVEARLGQGAEGRAAQVKVVLGDRVVVHVGDHHRLDV 393
Query: 1031 ARALRFFLASHXXXXXXXXXXXXXXXXXXRRHAAVGWQVHVLDPARTAVVRSAGTVGLTV 1210
A A AS+ H G VHVL+ A AVV G VG +V
Sbjct: 392 AGAGAVAAASYLVAGAAALAVLEQGLVAAGGHGGEGVLVHVLEAASAAVVVGPGAVGRSV 213
Query: 1211 PGGPSGEP 1234
PG EP
Sbjct: 212 PGRSGREP 189
Score = 79.4 bits (167), Expect(3) = 6e-065
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 677
G KI FH+ +G N YLAVL++Y DGD++ ++++ S W M+ SWG+IWRMD+
Sbjct: 564 GLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKGANSGSWMAMRESWGSIWRMDSNH 743
Query: 676 ALKGP 662
L+GP
Sbjct: 744 RLQGP 758
Score = 53.8 bits (111), Expect(2) = 7e-036
Identities = 31/65 (47%), Positives = 33/65 (50%)
Frame = +2 / -2
Query: 686 VHPPDGAPRELHGLPLSRQLVLDFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPGGV 865
VHPPDG+PR H P R L H VAV +L QH QV V AL VE DL G V
Sbjct: 734 VHPPDGSPRLAHRHPRPRVGSLHVHLDHVAVHVLVLDQHRQVHRVGALHHVEVDLEAGEV 555
Query: 866 LASHP 880
P
Sbjct: 554 ARHPP 540
Score = 40.5 bits (82), Expect(2) = 3e-029
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = +1 / -1
Query: 688 PSSRWRPKRASWASTQPTTCPGFPSARCRRRPPHTSPARPGSWGCSPSRCGTRSSAR 858
PS+RW P + ST P+ P P RR P T A PG+ SP G+ S R
Sbjct: 732 PSARWIPTTRASPSTTPSWLPSCPPGSRRRPCPRTRSAPPGTPRWSPPPRGS*S*GR 562
Score = 29.5 bits (58), Expect(3) = 6e-065
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / +3
Query: 1249 NYNGKWLTARATWY 1208
+Y+ WL ARATWY
Sbjct: 174 SYSSAWLPARATWY 215
>gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H05
5-PRIME, mRNA sequence
Length = 539
Score = 233 bits (504), Expect(2) = 2e-063
Identities = 89/145 (61%), Positives = 105/145 (72%)
Frame = -3 / +2
Query: 1279 KVPPGPNITTNYNGKWLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPI 1100
KVPPGPNITTNYN W A+ATWY GIK+VNL PY+GM ACGN+PI
Sbjct: 101 KVPPGPNITTNYNMNWTPAKATWYGKATGSGPKDNGGACGIKDVNLAPYNGMIACGNIPI 280
Query: 1099 FKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLND 920
FKDGKGCGSCYEV+C + P CS P+TV+ITD NYEPIAPYH DLSGKAFG++A G
Sbjct: 281 FKDGKGCGSCYEVKCNKPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQ 460
Query: 919 KIRHCGIMDVEFRRVRCKYPAGQKI 845
+R G ++++FRRVRCKY G K+
Sbjct: 461 TLRSFGELELQFRRVRCKYAPGTKV 535
Score = 142 bits (304), Expect(2) = 1e-035
Identities = 65/102 (63%), Positives = 71/102 (69%)
Frame = +3 / -3
Query: 855 PAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLP 1034
P YL RTLLN +S P R + P A PKALP +S W GA+GS*F+SVM TV GL
Sbjct: 525 PGAYLQRTLLNCSSSSPNERSVCSFPAVAMAPKALPDRSMWYGAMGS*FLSVMKTVMGLS 346
Query: 1035 EHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFLI 1160
EH G LHLTS* EP PLPSLKMG LP A+MPL*G RFT LI
Sbjct: 345 EHGGGLLHLTS*QEPHPLPSLKMGMLPQAIMPL*GARFTSLI 220
Score = 82.2 bits (173), Expect(3) = 3e-023
Identities = 42/99 (42%), Positives = 55/99 (55%)
Frame = -2 / +1
Query: 1160 DQEREPATLQRHDGVRQRPHXXXXXXXXXXXXGEMQGKT*VLGQSSHGVHH*HELRAYRS 981
DQ REP +LQRHD +RQ PH G++Q VL Q+ H +HH ELRA+R+
Sbjct: 220 DQGREPCSLQRHDRLRQHPHLQGRQGMRLLLRGQVQQAAAVLRQAHHRLHHRQELRAHRA 399
Query: 980 LPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQV 864
+P RQGLR G R + +R VQ+GA+QV
Sbjct: 400 VPH*PVRQGLRRHGDGRERADAPLIRGARAAVQEGALQV 516
Score = 81.3 bits (171), Expect(2) = 4e-025
Identities = 32/59 (54%), Positives = 34/59 (57%)
Frame = +1 / -1
Query: 1102 WGRCRTPSCRCRVAGSRS*SXXXXXXXXXXXXWADRTRWP*R*ATCRCSWW*CWGRVAP 1278
WG CR SCRCR GSR *S W RTRWP R ++ CSWW*CWG VAP
Sbjct: 278 WGCCRRRSCRCREQGSRP*SRTRRRCLWGRSRWPCRTRWPWRGSSSCCSWW*CWGPVAP 102
Score = 54.2 bits (112), Expect(2) = 4e-025
Identities = 32/71 (45%), Positives = 38/71 (53%)
Frame = +2 / -2
Query: 845 DLLPGGVLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRD 1024
DL VLA+HP EL + A ++ PG GAEGLA QV VV D LVV V D D
Sbjct: 535 DLGARRVLAAHPPELQLELPE*AERLLVPGRRHGAEGLAGQVNVVRRDGLVVLVGDEDGD 356
Query: 1025 WIARALRFFLA 1057
+ A R +A
Sbjct: 355 GLVGARRRLVA 323
Score = 40.9 bits (83), Expect(3) = 3e-023
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 1280 EGATRPQHHHQLQRQVAHR*GHL 1212
+GAT PQHHHQLQ ++ R GHL
Sbjct: 100 QGATGPQHHHQLQHELDPRQGHL 168
Score = 29.9 bits (59), Expect(2) = 2e-063
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 1323 PSLRRSSPAGRAGPR 1279
PS RRSSPA RA PR
Sbjct: 60 PSWRRSSPAARASPR 104
Score = 29.0 bits (57), Expect(2) = 1e-035
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / -2
Query: 1283 GPARPAGDERRKDG 1324
G AR AGDERR+DG
Sbjct: 100 GDARAAGDERRQDG 59
Score = 23.5 bits (45), Expect(3) = 3e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 1200 PTVPALLTTAVRAGS 1156
P PA TTA RAGS
Sbjct: 180 PPAPAPKTTAARAGS 224
>gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM12C11
5-PRIME, mRNA sequence
Length = 539
Score = 233 bits (504), Expect(2) = 2e-063
Identities = 89/145 (61%), Positives = 105/145 (72%)
Frame = -3 / +2
Query: 1279 KVPPGPNITTNYNGKWLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPI 1100
KVPPGPNITTNYN W A+ATWY GIK+VNL PY+GM ACGN+PI
Sbjct: 101 KVPPGPNITTNYNMNWTPAKATWYGKATGSGPKDNGGACGIKDVNLAPYNGMIACGNIPI 280
Query: 1099 FKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLND 920
FKDGKGCGSCYEV+C + P CS P+TV+ITD NYEPIAPYH DLSGKAFG++A G
Sbjct: 281 FKDGKGCGSCYEVKCNKPPPCSDKPITVFITDKNYEPIAPYHIDLSGKAFGAMATAGNEQ 460
Query: 919 KIRHCGIMDVEFRRVRCKYPAGQKI 845
+R G ++++FRRVRCKY G K+
Sbjct: 461 TLRSFGELELQFRRVRCKYAPGTKV 535
Score = 142 bits (304), Expect(2) = 1e-035
Identities = 65/102 (63%), Positives = 71/102 (69%)
Frame = +3 / -3
Query: 855 PAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLP 1034
P YL RTLLN +S P R + P A PKALP +S W GA+GS*F+SVM TV GL
Sbjct: 525 PGAYLQRTLLNCSSSSPNERSVCSFPAVAMAPKALPDRSMWYGAMGS*FLSVMKTVMGLS 346
Query: 1035 EHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFLI 1160
EH G LHLTS* EP PLPSLKMG LP A+MPL*G RFT LI
Sbjct: 345 EHGGGLLHLTS*QEPHPLPSLKMGMLPQAIMPL*GARFTSLI 220
Score = 82.2 bits (173), Expect(3) = 3e-023
Identities = 42/99 (42%), Positives = 55/99 (55%)
Frame = -2 / +1
Query: 1160 DQEREPATLQRHDGVRQRPHXXXXXXXXXXXXGEMQGKT*VLGQSSHGVHH*HELRAYRS 981
DQ REP +LQRHD +RQ PH G++Q VL Q+ H +HH ELRA+R+
Sbjct: 220 DQGREPCSLQRHDRLRQHPHLQGRQGMRLLLRGQVQQAAAVLRQAHHRLHHRQELRAHRA 399
Query: 980 LPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQV 864
+P RQGLR G R + +R VQ+GA+QV
Sbjct: 400 VPH*PVRQGLRRHGDGRERADAPLIRGARAAVQEGALQV 516
Score = 81.3 bits (171), Expect(2) = 4e-025
Identities = 32/59 (54%), Positives = 34/59 (57%)
Frame = +1 / -1
Query: 1102 WGRCRTPSCRCRVAGSRS*SXXXXXXXXXXXXWADRTRWP*R*ATCRCSWW*CWGRVAP 1278
WG CR SCRCR GSR *S W RTRWP R ++ CSWW*CWG VAP
Sbjct: 278 WGCCRRRSCRCREQGSRP*SRTRRRCLWGRSRWPCRTRWPWRGSSSCCSWW*CWGPVAP 102
Score = 54.2 bits (112), Expect(2) = 4e-025
Identities = 32/71 (45%), Positives = 38/71 (53%)
Frame = +2 / -2
Query: 845 DLLPGGVLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRD 1024
DL VLA+HP EL + A ++ PG GAEGLA QV VV D LVV V D D
Sbjct: 535 DLGARRVLAAHPPELQLELPE*AERLLVPGRRHGAEGLAGQVNVVRRDGLVVLVGDEDGD 356
Query: 1025 WIARALRFFLA 1057
+ A R +A
Sbjct: 355 GLVGARRRLVA 323
Score = 40.9 bits (83), Expect(3) = 3e-023
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 1280 EGATRPQHHHQLQRQVAHR*GHL 1212
+GAT PQHHHQLQ ++ R GHL
Sbjct: 100 QGATGPQHHHQLQHELDPRQGHL 168
Score = 29.9 bits (59), Expect(2) = 2e-063
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 1323 PSLRRSSPAGRAGPR 1279
PS RRSSPA RA PR
Sbjct: 60 PSWRRSSPAARASPR 104
Score = 29.0 bits (57), Expect(2) = 1e-035
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / -2
Query: 1283 GPARPAGDERRKDG 1324
G AR AGDERR+DG
Sbjct: 100 GDARAAGDERRQDG 59
Score = 23.5 bits (45), Expect(3) = 3e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 1200 PTVPALLTTAVRAGS 1156
P PA TTA RAGS
Sbjct: 180 PPAPAPKTTAARAGS 224
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 198 bits (426), Expect(3) = 6e-062
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +1
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 106 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 285
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 286 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 465
Query: 874 RCKYP 860
C++P
Sbjct: 466 PCEFP 480
Score = 116 bits (247), Expect(2) = 2e-033
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 479 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 300
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 299 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 183
Score = 67.0 bits (140), Expect(3) = 8e-023
Identities = 35/63 (55%), Positives = 39/63 (61%)
Frame = +2 / -2
Query: 851 LPGGVLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWI 1030
L G LA H ELDV DA V L+ E GL GAE A QVEVV +R+VVHV D HR +
Sbjct: 489 LETGELARHSLELDVDDAGVPELLAEAGLGHGAERGATQVEVVLGNRVVVHVGDDHRLRV 310
Query: 1031 ARA 1039
A A
Sbjct: 309 AGA 301
Score = 47.8 bits (98), Expect(3) = 8e-023
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = +2 / -2
Query: 1118 RRHAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPL 1237
R H G V VL+PART VV AGT G VPGGP P+
Sbjct: 222 RCHGGEGVLVGVLEPARTTVVHGAGTRGRAVPGGPGVLPV 103
Score = 47.3 bits (97), Expect(2) = 2e-033
Identities = 25/58 (43%), Positives = 30/58 (51%)
Frame = +2 / -3
Query: 686 VHPPDGAPRELHGLPLSRQLVLDFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPG 859
V PPDG+PR H P + + H VAV +L QHG+V V LL VE L G
Sbjct: 650 VKPPDGSPRLAHRRPRTEVGSIRSPLHHVAVAVFVLPQHGEVHRVRXLLHVEGHLRQG 477
Score = 40.5 bits (82), Expect(3) = 6e-062
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3 / +3
Query: 730 WKPMKLSWGAIWRMDTAKALKGPFS 656
W PM+ SWG+IW +D L+ PFS
Sbjct: 606 WTPMRESWGSIWGLDFGHRLQAPFS 680
Score = 39.1 bits (79), Expect(3) = 6e-062
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 850 KIVFHIEKGCNPNYLAVLVKYVADDGDIV 764
++ FH+E+ NP Y AVL +Y DGD+V
Sbjct: 486 QVTFHVEQXSNPVYFAVLGEYEDGDGDVV 572
Score = 30.4 bits (60), Expect(3) = 8e-023
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1 / -2
Query: 697 RWRPKRASWASTQPTTCPGFPSARCRRRPPHTSPARPGSWGCSPSRCG 840
RW P + AST + P A RRR T PAR + G +P+ G
Sbjct: 639 RWIPTTRASASTYRSWLH*VPLAPRRRRRLRTPPARRSTPGSTPAPRG 496
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 177 bits (381), Expect(4) = 1e-060
Identities = 63/99 (63%), Positives = 79/99 (79%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
KNVN P+ MT+CGN P+FKDGKGCG+CY+++C + CSG TV ITDMNY P+APY
Sbjct: 62 KNVNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMNYYPVAPY 241
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 242 HFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 358
Score = 123 bits (264), Expect(4) = 1e-035
Identities = 59/99 (59%), Positives = 67/99 (67%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 357 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 178
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+ +HL *H PQPLPSL G LP VM + G RFTFL
Sbjct: 177 ALCFVHLIL*HAPQPLPSLNSGWLPQEVMAMNGYRFTFL 61
Score = 46.9 bits (96), Expect(4) = 1e-060
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G N Y+A+LV+Y DGD+V +++ +
Sbjct: 359 GLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 469
Score = 43.2 bits (88), Expect(4) = 1e-060
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = -3 / +3
Query: 697 WRMDTAKALKGPFSIRLTSESGKKVIAKDV 608
WR+D+ L+ PFSIR+ +ESGK ++A++V
Sbjct: 534 WRLDSNHRLQAPFSIRIRNESGKTLVARNV 623
Score = 30.9 bits (61), Expect(4) = 1e-035
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2 / -2
Query: 1145 VHVLDPARTAVVRSAGTVG 1201
VHVL+PA AVV AG VG
Sbjct: 73 VHVLEPASAAVVVGAGAVG 17
Score = 27.6 bits (54), Expect(4) = 1e-035
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2 / -2
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ V V LL VE L P
Sbjct: 451 HHVAVAVLVLHQDRHVHRVGPLLHVEPHLQP 359
Score = 24.0 bits (46), Expect(4) = 1e-035
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3 / -2
Query: 609 TSLAMTFLPDSLVRRMEKG 665
T A + LPDSL RME G
Sbjct: 622 TLRATSVLPDSLRMRMENG 566
Score = 23.5 bits (45), Expect(4) = 1e-060
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 1200 PTVPALLTTAVRAGS 1156
PT PA TTA AGS
Sbjct: 18 PTAPAPTTTAALAGS 62
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016J13f,
mRNA sequence
Length = 656
Score = 198 bits (426), Expect(2) = 7e-058
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 180 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 359
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 360 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 539
Query: 874 RCKYP 860
C++P
Sbjct: 540 PCEFP 554
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 553 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 374
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 373 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 257
Score = 64.8 bits (135), Expect(3) = 1e-021
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2 / -1
Query: 866 LASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWIARA 1039
LA H ELDV DA V L+ E GL GAE A QVEVV +R+VVHV D HR +A A
Sbjct: 548 LARHSLELDVDDAGVPELLAEAGLGHGAERGATQVEVVLGNRVVVHVGDDHRLRVAGA 375
Score = 47.8 bits (98), Expect(3) = 1e-021
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = +2 / -1
Query: 1118 RRHAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPL 1237
R H G V VL+PART VV AGT G VPGGP P+
Sbjct: 296 RCHGGEGVLVGVLEPARTTVVHGAGTRGRAVPGGPGVLPV 177
Score = 47.3 bits (97), Expect(2) = 7e-058
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIV 764
G K+ FH+E+G NP Y AVLV+Y DGD V
Sbjct: 555 GLKVTFHVEQGSNPVYFAVLVEYEDGDGDXV 647
Score = 36.8 bits (74), Expect(2) = 3e-030
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2 / -1
Query: 758 HQHDVAVVRHILHQHGQVVGVAALLDVEHDL 850
H H VAV +LHQHG+V V LL VE L
Sbjct: 653 HXHXVAVAVLVLHQHGEVHRVRPLLHVEGHL 561
Score = 29.0 bits (57), Expect(3) = 1e-021
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1 / -3
Query: 757 PSARCRRRPPHTSPARPGSWGCSPSRCG 840
P A RRR P T PAR + G +P+ G
Sbjct: 654 PXAPXRRRRPRTPPARRSTPGSTPAPRG 571
>gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
5-PRIME, mRNA sequence
Length = 628
Score = 178 bits (383), Expect(3) = 7e-058
Identities = 66/114 (57%), Positives = 84/114 (73%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K V+ P+ GMT+CGNVPIFKDG+GCGSC+E++C + CSG P V ITD N EPIA Y
Sbjct: 217 KEVDKAPFFGMTSCGNVPIFKDGRGCGSCFELKCTKPEACSGEPTIVTITDKNEEPIAAY 396
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNP 815
HFDLSG AFG++AK G K+R G ++++FRRV+CKYP G K+ FH +G P
Sbjct: 397 HFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKYPEGTKVNFHXGEGLQP 558
Score = 113 bits (241), Expect(2) = 2e-028
Identities = 55/114 (48%), Positives = 63/114 (55%)
Frame = +3 / -3
Query: 816 GLQPFSMWNTIFCPAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS 995
G P W P+GYLH T N S P R P A PKA P +SKW A+GS
Sbjct: 557 GWSPSPXWKFTLVPSGYLHLTRRNLISTSPASRSFCSWPFLAMVPKAWPDRSKWYAAMGS 378
Query: 996 *FMSVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
F+SVM T+ G PE + +HL+S EPQP PSLKMGTLP VMP G T L
Sbjct: 377 SFLSVMVTMVGSPEQASGLVHLSSKQEPQPRPSLKMGTLPQEVMPKKGALSTSL 216
Score = 43.7 bits (89), Expect(3) = 7e-058
Identities = 15/28 (53%), Positives = 24/28 (85%)
Frame = -3 / +2
Query: 832 EKGCNPNYLAVLVKYVADDGDIVLMEIQ 749
EKG +PNYLA++VK++ DGD+V ++I+
Sbjct: 542 EKGSSPNYLALVVKFLQGDGDVVAVDIK 625
Score = 41.8 bits (85), Expect(3) = 7e-058
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +1
Query: 1288 GPPKVPPGPNITTNYNGKWLTARATWY 1208
G KVP GPNIT Y +W A+ TWY
Sbjct: 85 GIAKVPCGPNITATYVSEWKDAKTTWY 165
Score = 33.1 bits (66), Expect(2) = 2e-028
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2 / -1
Query: 749 LDFHQHDVAVVRHILHQHGQVVGVAALL 832
LD H H VAV L G+VVG ALL
Sbjct: 625 LDVHGHHVAVALEELDNQGEVVGAGALL 542
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 108 bits (231), Expect(5) = 1e-057
Identities = 39/64 (60%), Positives = 53/64 (82%)
Frame = -3 / +3
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 872
+ P CSG P TV ITDMNY+P++ YHFDLSG AFG++AK G ND++RH GI++++F+RV
Sbjct: 309 DHPACSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVP 488
Query: 871 CKYP 860
C+YP
Sbjct: 489 CQYP 500
Score = 92.3 bits (195), Expect(3) = 6e-029
Identities = 40/64 (62%), Positives = 45/64 (70%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN +MP WR SL P A PKA+PL+SKW* GS*FMSVM TV G PEH
Sbjct: 499 GYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW*RETGS*FMSVMITVLGTPEH 320
Query: 1041 SGFS 1052
+G+S
Sbjct: 319 AGWS 308
Score = 82.2 bits (173), Expect(5) = 1e-057
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +3
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 198 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 299
Score = 48.7 bits (100), Expect(3) = 6e-029
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -3
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 298 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 197
Score = 47.8 bits (98), Expect(5) = 1e-057
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G + FH+E+G NP Y+A+LV+Y DGD+ ++I +
Sbjct: 501 GLTVTFHVEEGSNPFYMAILVEYENGDGDVKQLDIME 611
Score = 33.1 bits (66), Expect(5) = 1e-057
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 739 SAEWKPMKLSWGAIWRM 689
+ +W PMK SW +IWRM
Sbjct: 651 TGQWVPMKESWXSIWRM 701
Score = 30.4 bits (60), Expect(3) = 6e-029
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2 / -2
Query: 689 HPPDGAPRELHGLPL 733
HPPD PR LHG PL
Sbjct: 701 HPPDRPPRLLHGHPL 657
Score = 27.2 bits (53), Expect(5) = 1e-057
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +3
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 111 NSSWLDAKATWY 146
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010F11f,
mRNA sequence
Length = 630
Score = 198 bits (427), Expect(2) = 2e-057
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +1
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 142 WEDARATWYGARTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 321
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 322 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 501
Query: 874 RCKYP 860
C++P
Sbjct: 502 PCEFP 516
Score = 116 bits (247), Expect(2) = 2e-030
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 515 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 336
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 335 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 219
Score = 45.5 bits (93), Expect(2) = 2e-057
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G NP Y VLV+Y DG++V +++ +
Sbjct: 517 GLKVTFHVEQGSNPVYFPVLVEY*DGDGNLVQVDLME 627
Score = 37.3 bits (75), Expect(2) = 2e-030
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2 / -1
Query: 752 DFHQHDVAVVRHILHQHGQVVGVAALLDVEHDL 850
+ H H VAV +LHQHG+V V LL VE L
Sbjct: 621 EVHLHQVAVAVLVLHQHGEVHRVRPLLHVEGHL 523
>gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001I02f, mRNA sequence
Length = 606
Score = 200 bits (431), Expect(2) = 6e-057
Identities = 74/124 (59%), Positives = 97/124 (78%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K V+ P+ GMT+CGNVPIFKDG+GCGSC+E++C + CSG P V ITD N EPIA Y
Sbjct: 196 KEVDKAPFFGMTSCGNVPIFKDGRGCGSCFELKCTKPEACSGEPTIVTITDKNEEPIAAY 375
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVL 797
HFDLSG AFG++AK G K+R G ++++FRRV+CKYP G K+ FH+EKG +PNYLA++
Sbjct: 376 HFDLSGHAFGTMAKEGQ*QKLRDAGEVEIKFRRVKCKYPEGTKVNFHVEKGSSPNYLALV 555
Query: 796 VKYV 785
VK++
Sbjct: 556 VKFL 567
Score = 133 bits (285), Expect = 2e-030
Identities = 63/121 (52%), Positives = 73/121 (60%)
Frame = +3 / -2
Query: 795 TSTAR*LGLQPFSMWNTIFCPAGYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSK 974
T+ AR*LGL+PFS W P+GYLH T N S P R P A PKA P +SK
Sbjct: 557 TTRAR*LGLEPFSTWKFTLVPSGYLHLTRRNLISTSPASRSFCYWPSLAMVPKAWPDRSK 378
Query: 975 W*GAIGS*FMSVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTF 1154
W A+GS F+SVM T+ G PE + +HL+S EPQP PSLKMGTLP VMP G T
Sbjct: 377 WYAAMGSSFLSVMVTMVGSPEQASGLVHLSSKQEPQPRPSLKMGTLPQEVMPKKGALSTS 198
Query: 1155 L 1157
L
Sbjct: 197 L 195
Score = 41.8 bits (85), Expect(2) = 6e-057
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3 / +1
Query: 1288 GPPKVPPGPNITTNYNGKWLTARATWY 1208
G KVP GPNIT Y +W A+ TWY
Sbjct: 64 GIAKVPCGPNITATYVSEWKDAKTTWY 144
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 108 bits (231), Expect(5) = 8e-057
Identities = 39/64 (60%), Positives = 53/64 (82%)
Frame = -3 / +3
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 872
+ P CSG P TV ITDMNY+P++ YHFDLSG AFG++AK G ND++RH GI++++F+RV
Sbjct: 315 DHPACSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVP 494
Query: 871 CKYP 860
C+YP
Sbjct: 495 CQYP 506
Score = 92.3 bits (195), Expect(2) = 1e-026
Identities = 40/64 (62%), Positives = 45/64 (70%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN +MP WR SL P A PKA+PL+SKW* GS*FMSVM TV G PEH
Sbjct: 505 GYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW*RETGS*FMSVMITVLGTPEH 326
Query: 1041 SGFS 1052
+G+S
Sbjct: 325 AGWS 314
Score = 82.2 bits (173), Expect(5) = 8e-057
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +3
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 204 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 305
Score = 48.7 bits (100), Expect(2) = 1e-026
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -2
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 304 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 203
Score = 46.4 bits (95), Expect(5) = 8e-057
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3 / +3
Query: 847 IVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
+ FH+E+G NP Y+A+LV+Y DGD+ ++I +
Sbjct: 516 VTFHVEEGSNPFYMAILVEYENGDGDVKQLDIME 617
Score = 31.8 bits (63), Expect(5) = 8e-057
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +3
Query: 739 SAEWKPMKLSWGAIW 695
+ +W PMK SWG+IW
Sbjct: 657 TGQWVPMKESWGSIW 701
Score = 27.2 bits (53), Expect(5) = 8e-057
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +3
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 117 NSSWLDAKATWY 152
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019F12f,
mRNA sequence
Length = 669
Score = 198 bits (426), Expect(2) = 2e-056
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +2
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 194 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 373
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 374 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 553
Query: 874 RCKYP 860
C++P
Sbjct: 554 PCEFP 568
Score = 116 bits (247), Expect(2) = 1e-031
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 567 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 388
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 387 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 271
Score = 42.8 bits (87), Expect(2) = 2e-056
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = -3 / +1
Query: 850 KIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 755
++ FH+E+G NP Y AVLV+Y DG +V ++
Sbjct: 574 QVTFHVEQGSNPVYFAVLVEYQDGDGHVVQVD 669
Score = 41.4 bits (84), Expect(2) = 1e-031
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +2 / -1
Query: 758 HQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPG 859
H H VAV +LHQHG+V V LL VE L PG
Sbjct: 666 HLHHVAVAVLVLHQHGEVHRVRPLLHVEGHLRPG 565
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024K16f,
mRNA sequence
Length = 677
Score = 198 bits (426), Expect(2) = 6e-056
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +2
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 194 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 373
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 374 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 553
Query: 874 RCKYP 860
C++P
Sbjct: 554 PCEFP 568
Score = 116 bits (247), Expect(2) = 9e-029
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 567 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 388
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 387 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 271
Score = 40.9 bits (83), Expect(2) = 6e-056
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 752
G K+ H+E+G NP Y VLV+Y D D V +++
Sbjct: 569 GLKVTXHVEQGSNPVYFXVLVEYXDGDXDXVQVDL 673
Score = 31.8 bits (63), Expect(2) = 9e-029
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2 / -2
Query: 752 DFHQHDVAVVRHILHQHGQVVGVAALLDV 838
+ H H V V +LHQHG+V V LL V
Sbjct: 673 EVHLHXVPVAVLVLHQHGEVHRVRPLLHV 587
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 198 bits (426), Expect(2) = 1e-055
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +1
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 202 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 381
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 382 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 561
Query: 874 RCKYP 860
C++P
Sbjct: 562 PCEFP 576
Score = 116 bits (247), Expect(2) = 2e-027
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 575 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 396
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 395 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 279
Score = 64.8 bits (135), Expect(3) = 9e-021
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +2 / -3
Query: 866 LASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWIARA 1039
LA H ELDV DA V L+ E GL GAE A QVEVV +R+VVHV D HR +A A
Sbjct: 570 LARHSLELDVDDAGVPELLAEAGLGHGAERGATQVEVVLGNRVVVHVGDDHRLRVAGA 397
Score = 47.8 bits (98), Expect(3) = 9e-021
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = +2 / -3
Query: 1118 RRHAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPL 1237
R H G V VL+PART VV AGT G VPGGP P+
Sbjct: 318 RCHGGEGVLVGVLEPARTTVVHGAGTRGRAVPGGPGVLPV 199
Score = 40.0 bits (81), Expect(2) = 1e-055
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKY 788
G K+ FH+E+G NP Y AVLV+Y
Sbjct: 577 GLKVTFHVEQGSNPVYFAVLVEY 645
Score = 27.6 bits (54), Expect(2) = 2e-027
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2 / -3
Query: 788 ILHQHGQVVGVAALLDVEHDL 850
+LHQHG+V V LL VE L
Sbjct: 645 VLHQHGEVHRVRPLLHVEGHL 583
Score = 25.8 bits (50), Expect(3) = 9e-021
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3 / -1
Query: 783 ATYFTSTAR*LGLQPFSMWNTIFCP 857
++Y TSTA+ G P S W P
Sbjct: 650 SSYSTSTAKYTGFDPCSTWKVTLRP 576
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020N13f,
mRNA sequence
Length = 630
Score = 198 bits (426), Expect(2) = 1e-054
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 189 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 368
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 369 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 548
Query: 874 RCKYP 860
C++P
Sbjct: 549 PCEFP 563
Score = 116 bits (247), Expect(2) = 5e-027
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 562 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 383
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 382 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 266
Score = 36.8 bits (74), Expect(2) = 1e-054
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVK 791
G K+ FH+E+G NP Y AVLV+
Sbjct: 564 GLKVTFHVEQGSNPVYFAVLVE 629
Score = 25.8 bits (50), Expect(2) = 5e-027
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 791 LHQHGQVVGVAALLDVEHDL 850
LHQHG+V V LL VE L
Sbjct: 629 LHQHGKVHRVRPLLHVEGHL 570
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 177 bits (381), Expect(4) = 2e-054
Identities = 63/99 (63%), Positives = 79/99 (79%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
KNVN P+ MT+CGN P+FKDGKGCG+CY+++C + CSG TV ITDMNY P+APY
Sbjct: 145 KNVNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMNYYPVAPY 324
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 325 HFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 441
Score = 123 bits (264), Expect(3) = 2e-037
Identities = 59/99 (59%), Positives = 67/99 (67%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 440 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 261
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+ +HL *H PQPLPSL G LP VM + G RFTFL
Sbjct: 260 ALCFVHLIL*HAPQPLPSLNSGWLPQEVMAMNGYRFTFL 144
Score = 46.9 bits (96), Expect(4) = 2e-054
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G N Y+A+LV+Y DGD+V +++ +
Sbjct: 442 GLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 552
Score = 43.7 bits (89), Expect(3) = 2e-037
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / -2
Query: 1145 VHVLDPARTAVVRSAGTVGLTVPGGP 1222
VHVL+PA AVV AG VG VPGGP
Sbjct: 156 VHVLEPASAAVVVGAGAVGRAVPGGP 79
Score = 27.6 bits (54), Expect(3) = 2e-037
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2 / -2
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ V V LL VE L P
Sbjct: 534 HHVAVAVLVLHQDRHVHRVGPLLHVEPHLQP 442
Score = 23.5 bits (45), Expect(4) = 2e-054
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 1200 PTVPALLTTAVRAGS 1156
PT PA TTA AGS
Sbjct: 101 PTAPAPTTTAALAGS 145
Score = 22.1 bits (42), Expect(4) = 2e-054
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 1262 QHHHQLQRQVAHR*GHL 1212
Q H ++ R V R GHL
Sbjct: 39 QRHRRVHRAVGRRPGHL 89
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0021G03f,
mRNA sequence
Length = 682
Score = 198 bits (426), Expect(2) = 2e-053
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 171 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 350
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 351 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 530
Query: 874 RCKYP 860
C++P
Sbjct: 531 PCEFP 545
Score = 116 bits (247), Expect(2) = 7e-027
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 544 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 365
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 364 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 248
Score = 32.7 bits (65), Expect(2) = 2e-053
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3 / +2
Query: 850 KIVFHIEKGCNPNYLAVL 797
K+ FH+E+G NP Y AVL
Sbjct: 551 KVTFHVEQGSNPVYFAVL 604
Score = 25.4 bits (49), Expect(2) = 7e-027
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / -1
Query: 791 LHQHGQVVGVAALLDVEHDLLPG 859
L QHG+V V LL VE PG
Sbjct: 610 LPQHGEVHRVGPLLHVEGHFRPG 542
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 108 bits (231), Expect(4) = 4e-053
Identities = 39/64 (60%), Positives = 53/64 (82%)
Frame = -3 / +2
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 872
+ P CSG P TV ITDMNY+P++ YHFDLSG AFG++AK G ND++RH GI++++F+RV
Sbjct: 308 DHPACSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVP 487
Query: 871 CKYP 860
C+YP
Sbjct: 488 CQYP 499
Score = 92.3 bits (195), Expect(2) = 1e-026
Identities = 40/64 (62%), Positives = 45/64 (70%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN +MP WR SL P A PKA+PL+SKW* GS*FMSVM TV G PEH
Sbjct: 498 GYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW*RETGS*FMSVMITVLGTPEH 319
Query: 1041 SGFS 1052
+G+S
Sbjct: 318 AGWS 307
Score = 82.2 bits (173), Expect(4) = 4e-053
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 196 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 297
Score = 48.7 bits (100), Expect(2) = 1e-026
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -3
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 296 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 195
Score = 47.8 bits (98), Expect(4) = 4e-053
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G + FH+E+G NP Y+A+LV+Y DGD+ ++I +
Sbjct: 500 GLTVTFHVEEGSNPFYMAILVEYENGDGDVKQLDIME 610
Score = 27.2 bits (53), Expect(4) = 4e-053
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +1
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 109 NSSWLDAKATWY 144
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 108 bits (231), Expect(4) = 4e-053
Identities = 39/64 (60%), Positives = 53/64 (82%)
Frame = -3 / +1
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 872
+ P CSG P TV ITDMNY+P++ YHFDLSG AFG++AK G ND++RH GI++++F+RV
Sbjct: 262 DHPACSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVP 441
Query: 871 CKYP 860
C+YP
Sbjct: 442 CQYP 453
Score = 91.8 bits (194), Expect(2) = 1e-026
Identities = 40/64 (62%), Positives = 45/64 (70%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN +MP WR SL P A PKA+PL+SKW* GS*FMSVM TV G PEH
Sbjct: 452 GYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW*RETGS*FMSVMITVFGTPEH 273
Query: 1041 SGFS 1052
+G+S
Sbjct: 272 AGWS 261
Score = 82.2 bits (173), Expect(4) = 4e-053
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +1
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 151 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 252
Score = 48.7 bits (100), Expect(2) = 1e-026
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -2
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 251 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 150
Score = 47.8 bits (98), Expect(4) = 4e-053
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G + FH+E+G NP Y+A+LV+Y DGD+ ++I +
Sbjct: 454 GLTVTFHVEEGSNPFYMAILVEYENGDGDVKQLDIME 564
Score = 27.2 bits (53), Expect(4) = 4e-053
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +1
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 64 NSSWLDAKATWY 99
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 108 bits (231), Expect(4) = 4e-053
Identities = 39/64 (60%), Positives = 53/64 (82%)
Frame = -3 / +2
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 872
+ P CSG P TV ITDMNY+P++ YHFDLSG AFG++AK G ND++RH GI++++F+RV
Sbjct: 200 DHPACSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVP 379
Query: 871 CKYP 860
C+YP
Sbjct: 380 CQYP 391
Score = 91.8 bits (194), Expect(2) = 1e-026
Identities = 40/64 (62%), Positives = 45/64 (70%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN +MP WR SL P A PKA+PL+SKW* GS*FMSVM TV G PEH
Sbjct: 390 GYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW*RETGS*FMSVMITVFGTPEH 211
Query: 1041 SGFS 1052
+G+S
Sbjct: 210 AGWS 199
Score = 82.2 bits (173), Expect(4) = 4e-053
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 89 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 190
Score = 48.7 bits (100), Expect(2) = 1e-026
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -1
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 189 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 88
Score = 47.8 bits (98), Expect(4) = 4e-053
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G + FH+E+G NP Y+A+LV+Y DGD+ ++I +
Sbjct: 392 GLTVTFHVEEGSNPFYMAILVEYENGDGDVKQLDIME 502
Score = 27.2 bits (53), Expect(4) = 4e-053
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +2
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 2 NSSWLDAKATWY 37
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 198 bits (426), Expect(2) = 4e-053
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 180 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 359
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 360 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 539
Query: 874 RCKYP 860
C++P
Sbjct: 540 PCEFP 554
Score = 116 bits (247), Expect(2) = 3e-031
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 553 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 374
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 373 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 257
Score = 40.0 bits (81), Expect(2) = 3e-031
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2 / -2
Query: 758 HQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPG 859
H H V V +LHQHG+V V LL V+ L PG
Sbjct: 652 HMHQVPVAVLVLHQHGEVHRVVPLLHVQXHLSPG 551
Score = 31.3 bits (62), Expect(2) = 4e-053
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3 / +2
Query: 850 KIVFHIEKGCNPNYLAVLVKYVADDGDIV 764
++ H+E+G NP Y VLV+Y D +V
Sbjct: 560 QVXLHVEQGYNPVYFTVLVEYEDRDRYLV 646
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 107 bits (229), Expect(3) = 1e-052
Identities = 39/100 (39%), Positives = 62/100 (62%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 677
G I F +++G NP Y L+++ DDGD+ + +++ S W M WGA+WR++
Sbjct: 285 GVNIAFKVDQGSNPFYFKTLIEFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGN 464
Query: 676 ALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 557
L+ PFS++LTS+SG+K++ +VI ANW A Y S V +
Sbjct: 465 RLRAPFSLQLTSDSGRKLVINNVILANWNAGATYRSLVNY 584
Score = 71.6 bits (150), Expect(3) = 1e-052
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = -3 / +3
Query: 1132 SGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMN 998
S M A G+ P+F GKGCG+CY+V+C CSG PVTV ITD++
Sbjct: 3 SSMIAAGSSPLFMKGKGCGACYDVKCSSNSACSGKPVTVVITDLS 137
Score = 67.0 bits (140), Expect(3) = 1e-052
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = -3 / +3
Query: 1000 NYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
N P P HFD+SG A G++AKPG+ DK+R G++ ++++RV CKYP
Sbjct: 144 NLYPGEPCHFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYP 284
Score = 57.9 bits (120), Expect(3) = 5e-022
Identities = 26/44 (59%), Positives = 28/44 (63%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIG 992
GYLH TLL M P R LS PGFA PKA+PL SKW G+ G
Sbjct: 283 GYLHGTLLYCILMTPPARSLSAMPGFAMAPKAVPLMSKWHGSPG 152
Score = 56.5 bits (117), Expect(3) = 5e-022
Identities = 24/41 (58%), Positives = 28/41 (68%)
Frame = +3 / -2
Query: 1005 SVMYTVTGLPEHSGFSLHLTS*HEPQPLPSLKMGTLPHAVM 1127
SVM TVTG PE + HLTS*H PQPLP + G LP A++
Sbjct: 130 SVMTTVTGFPEQAELLEHLTS*HAPQPLPFMNRGELPAAII 8
Score = 34.5 bits (69), Expect(3) = 5e-022
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +3 / -2
Query: 561 WTLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQ 710
+T E A Q A MT L +FLP+S V EKG S L + APQ
Sbjct: 580 FTRERYVAPAFQLARMTLLMTSFLPESEVSWSEKGARSRLPLLRRHNAPQ 431
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 112 bits (239), Expect(3) = 1e-052
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = -3 / +1
Query: 1039 CSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
CSG TV ITDMNY P+APYHFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 19 CSGRQETVMITDMNYYPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 198
Score = 87.2 bits (184), Expect(3) = 1e-052
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -3 / +1
Query: 730 WKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 557
W M+ SWG+IWR+D+ L+ PFSIR+ +ESGK ++A++VIP NWRP+ Y S VQ+
Sbjct: 340 WTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQY 513
Score = 79.9 bits (168), Expect(3) = 4e-027
Identities = 37/61 (60%), Positives = 43/61 (70%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 197 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 18
Query: 1041 S 1043
+
Sbjct: 17 A 15
Score = 52.4 bits (108), Expect(3) = 4e-027
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = +3 / -1
Query: 561 WTLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
WT+E * GLQF GMT A + LPDSL RME G S QM P +S + H
Sbjct: 509 WTMER*KVLGLQFLGMTLRATSVLPDSLRMRMENGAWRRWLESRRQMDPHDSRIRVH 339
Score = 46.9 bits (96), Expect(3) = 1e-052
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G K+ FH+E+G N Y+A+LV+Y DGD+V +++ +
Sbjct: 199 GLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 309
Score = 27.6 bits (54), Expect(3) = 4e-027
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2 / -3
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV +LHQ V V LL VE L P
Sbjct: 291 HHVAVAVLVLHQDRHVHRVGPLLHVEPHLQP 199
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 177 bits (381), Expect(4) = 2e-051
Identities = 63/99 (63%), Positives = 79/99 (79%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
KNVN P+ MT+CGN P+FKDGKGCG+CY+++C + CSG TV ITDMNY P+APY
Sbjct: 362 KNVNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMNYYPVAPY 541
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPG ND++RH GI+D++F RV C++P
Sbjct: 542 HFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFP 658
Score = 123 bits (264), Expect(3) = 3e-036
Identities = 59/99 (59%), Positives = 67/99 (67%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TL+N SMMP R SL PG A PKA+PL+SKW*GA G *FMSV+ TV+ PEH
Sbjct: 657 GNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GATG**FMSVIITVSCRPEH 478
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+ +HL *H PQPLPSL G LP VM + G RFTFL
Sbjct: 477 ALCFVHLIL*HAPQPLPSLNSGWLPQEVMAMNGYRFTFL 361
Score = 43.7 bits (89), Expect(3) = 3e-036
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / -1
Query: 1145 VHVLDPARTAVVRSAGTVGLTVPGGP 1222
VHVL+PA AVV AG VG VPGGP
Sbjct: 373 VHVLEPASAAVVVGAGAVGRAVPGGP 296
Score = 37.3 bits (75), Expect(4) = 2e-051
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 755
G K+ FH+E+G N Y+A+ V+ DGD+V ++
Sbjct: 659 GLKVGFHVEEGSNAVYMAIPVEVENRDGDLVQVD 760
Score = 23.5 bits (45), Expect(4) = 2e-051
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 1200 PTVPALLTTAVRAGS 1156
PT PA TTA AGS
Sbjct: 318 PTAPAPTTTAALAGS 362
Score = 23.5 bits (45), Expect(3) = 3e-036
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2 / -1
Query: 764 HDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
H VAV LH++ V V LL VE L P
Sbjct: 751 HQVAVPVLDLHRNRHVHRVGPLLHVEPHLQP 659
Score = 22.1 bits (42), Expect(4) = 2e-051
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2 / +1
Query: 1262 QHHHQLQRQVAHR*GHL 1212
Q H ++ R V R GHL
Sbjct: 256 QRHRRVHRAVGRRPGHL 306
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 203 bits (438), Expect = 2e-051
Identities = 75/138 (54%), Positives = 103/138 (74%)
Frame = -3 / -3
Query: 988 IAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNY 809
IA YHFDLSG AFG++AK G K+R G ++++FRRV+CKYP G K+ FH+EKG +PNY
Sbjct: 678 IAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKYPEGTKVNFHVEKGSSPNY 499
Query: 808 LAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGK 629
LA++VK++ DGD+V ++I+ K +W +K SWGA+WR+DT L GPFS+R T+E G
Sbjct: 498 LALVVKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVWRIDTPDKLIGPFSVRYTTEGGT 319
Query: 628 KVIAKDVIPANWRPDAVY 575
K +A+DVIP W+PD Y
Sbjct: 318 KTVAEDVIPEGWKPDTSY 265
>gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL5B4 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 108 bits (231), Expect(4) = 3e-051
Identities = 39/64 (60%), Positives = 53/64 (82%)
Frame = -3 / +3
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 872
+ P CSG P TV ITDMNY+P++ YHFDLSG AFG++AK G ND++RH GI++++F+RV
Sbjct: 309 DHPACSGVPKTVIITDMNYDPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVP 488
Query: 871 CKYP 860
C+YP
Sbjct: 489 CQYP 500
Score = 92.3 bits (195), Expect(2) = 1e-026
Identities = 40/64 (62%), Positives = 45/64 (70%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
GY H TLLN +MP WR SL P A PKA+PL+SKW* GS*FMSVM TV G PEH
Sbjct: 499 GYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW*RETGS*FMSVMITVLGTPEH 320
Query: 1041 SGFS 1052
+G+S
Sbjct: 319 AGWS 308
Score = 82.2 bits (173), Expect(4) = 3e-051
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +3
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 198 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 299
Score = 48.7 bits (100), Expect(2) = 1e-026
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -1
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 298 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 197
Score = 41.4 bits (84), Expect(4) = 3e-051
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G + FH+E+ NP Y+A+L +Y DGD+ ++I +
Sbjct: 501 GLTVTFHVEEXSNPFYMAILGEYENGDGDVKQLDIME 611
Score = 27.2 bits (53), Expect(4) = 3e-051
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +3
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 111 NSSWLDAKATWY 146
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023C15f,
mRNA sequence
Length = 646
Score = 182 bits (391), Expect(3) = 5e-051
Identities = 65/99 (65%), Positives = 81/99 (81%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K+ N P++ MT+CGN P+FKDGKGCGSCY++RC++ CSG TV ITDMNY P+APY
Sbjct: 290 KHTNQYPFASMTSCGNQPLFKDGKGCGSCYKIRCRKDQSCSGRTETVIITDMNYYPVAPY 469
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG LAKPGLND++RH GI+D+EF RV C++P
Sbjct: 470 HFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFP 586
Score = 127 bits (272), Expect(3) = 5e-035
Identities = 58/89 (65%), Positives = 63/89 (70%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H T +NS SMMP+WR LSLSPGFA P A+PL+SKW*GA G *FMSVM TV+ LPE
Sbjct: 585 GNSHGTRVNSMSMMPEWRSLSLSPGFASLPNAVPLRSKW*GATG**FMSVMITVSVLPEQ 406
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVM 1127
LHL *HEP PLPSL G LP VM
Sbjct: 405 DWSFLHLIL*HEPHPLPSLNNGWLPQEVM 319
Score = 35.0 bits (70), Expect(3) = 5e-035
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2 / -1
Query: 1145 VHVLDPARTAVVRSAGTVGLTVPGGPSGEP 1234
V VL+ A T VV AG +GL +PG P P
Sbjct: 301 VGVLEAAGTTVVVGAGAIGLAIPGRPGRGP 212
Score = 29.5 bits (58), Expect(3) = 5e-051
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVL 797
G KI FH+E+ NP Y AVL
Sbjct: 587 GLKIGFHVEEYSNPVYFAVL 646
Score = 29.5 bits (58), Expect(3) = 5e-051
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / +2
Query: 1252 TNYNGKWLTARATWY 1208
T Y G W ARATWY
Sbjct: 194 TKYWGPWTPARATWY 238
Score = 24.4 bits (47), Expect(3) = 5e-035
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3 / -2
Query: 798 STAR*LGLQPFSMWNTIFCP 857
STA+* G + S WN I P
Sbjct: 645 STAK*TGFEYSSTWNPILSP 586
>gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G06
3-PRIME, mRNA sequence
Length = 588
Score = 118 bits (252), Expect(2) = 2e-050
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = -3 / -1
Query: 733 EWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 557
+W PM LSWGAIWR D A A+K PFSIRLTSESGKK+IA+DVIPANW+PD VY SN+QF
Sbjct: 381 KWIPMTLSWGAIWRWDGANAIKAPFSIRLTSESGKKLIAQDVIPANWKPDTVYQSNIQF 205
Score = 101 bits (216), Expect(2) = 2e-050
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = -3 / -1
Query: 931 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 752
G +R G ++++FRRVRCKY G K+ FH+E G NPNYLA+LVK+VADDGDIV MEI
Sbjct: 582 GNEQTLRSFGELELQFRRVRCKYAPGTKVTFHVETGSNPNYLAILVKFVADDGDIVQMEI 403
Query: 751 QDK 743
Q+K
Sbjct: 402 QEK 394
Score = 89.0 bits (188), Expect(2) = 1e-029
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +3 / +2
Query: 555 *NWTLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
*NW + *T SG Q AGMTS AM+FLPDSLVRRMEKG L ALA S LQMAP + +G H
Sbjct: 203 *NWIFDW*TVSGFQLAGMTSWAMSFLPDSLVRRMEKGALIALAPSHLQMAPHDKVIGIH 379
Score = 86.8 bits (183), Expect(2) = 8e-028
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = -2 / -3
Query: 731 VEAHEALLGRHLEDGHCQGAQGPLLHPPHQRVRQEGHRQRRHPGELETRCRLHFQRPILL 552
V+ + ++GRHLE G Q QGPLLHPPHQRVRQE HR RHP +LE R RL + P+L
Sbjct: 379 VDPDDLVVGRHLEVGRRQCDQGPLLHPPHQRVRQEAHRPGRHPRQLEARHRLPVKYPVLE 200
Query: 551 D 549
D
Sbjct: 199 D 197
Score = 62.0 bits (129), Expect(2) = 1e-029
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +2 / +1
Query: 737 RQLVLDFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLPGGVLASHPSELDVHDAAVAN 916
R+ +L+ H HDVAVV L ++GQVV V A LDVE DL VLA+HP EL + A
Sbjct: 388 RRFLLNLHLHDVAVVGDELDEYGQVVWVRAGLDVEGDLGARRVLAAHPPELQLELPE*AE 567
Query: 917 LVVEPG 934
++ PG
Sbjct: 568 RLLVPG 585
Score = 57.9 bits (120), Expect(2) = 8e-028
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = -2 / -3
Query: 887 VQKGAMQVPRRAEDRVPHREGLQPQLPGRAGEVCGGRRRHRADGNPGQV 741
VQ+GA+QV + +P R+ L+P+LPG +V RRRHRADG+ G++
Sbjct: 538 VQEGALQVRAWHQGHLPRRDRLEPKLPGHTRQVRRRRRRHRADGDSGEI 392
>gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL63c5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 82.2 bits (173), Expect(6) = 4e-050
Identities = 27/34 (79%), Positives = 32/34 (94%)
Frame = -3 / +2
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
KNVNLPP+S MT+CGN P+FKDGKGCGSCY++RC
Sbjct: 140 KNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 241
Score = 58.3 bits (121), Expect(6) = 4e-050
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -3 / +2
Query: 1051 EKPECSGNPVTVYITDMNYEPIAPYHFDLSG 959
+ P CSG P TV ITDMNY+P++ YHFDLSG
Sbjct: 251 DHPACSGVPKTVIITDMNYDPVSRYHFDLSG 343
Score = 53.8 bits (111), Expect(3) = 2e-022
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +3 / -2
Query: 951 KALPLKSKW*GAIGS*FMSVMYTVTGLPEHSGFS 1052
+ +PL+SKW* GS*FMSVM TV G PEH+G+S
Sbjct: 351 RRVPLRSKW*RETGS*FMSVMITVLGTPEHAGWS 250
Score = 53.3 bits (110), Expect(6) = 4e-050
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = -3 / +3
Query: 955 AFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
AFG +AK G ND++RH GI++++F+RV C+YP
Sbjct: 348 AFGGMAKYGRNDELRHAGIINMQFKRVPCQYP 443
Score = 48.7 bits (100), Expect(3) = 2e-022
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +3 / -2
Query: 1056 HLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
HL * EPQPLPSLK G LP VM GG+ TFL
Sbjct: 240 HLIW*QEPQPLPSLKSGWLPQEVMEEKGGKLTFL 139
Score = 44.6 bits (91), Expect(6) = 4e-050
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3 / +3
Query: 847 IVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
+ FH+E+G NP Y+ +LV+Y DGD+ ++I +
Sbjct: 453 VTFHVEEGSNPFYMGILVEYENGDGDVKQLDIME 554
Score = 41.8 bits (85), Expect(3) = 2e-022
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKA 956
GY H TLLN +MP WR SL P A PKA
Sbjct: 442 GYWHGTLLNCMLIMPAWRSSSLRPYLAMPPKA 347
Score = 27.2 bits (53), Expect(6) = 4e-050
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3 / +2
Query: 1243 NGKWLTARATWY 1208
N WL A+ATWY
Sbjct: 53 NSSWLDAKATWY 88
Score = 24.9 bits (48), Expect(6) = 4e-050
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3 / +3
Query: 739 SAEWKPMKLSWGA 701
+ +W PMK SWG+
Sbjct: 594 TGQWVPMKESWGS 632
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 173 bits (373), Expect(3) = 4e-050
Identities = 64/102 (62%), Positives = 78/102 (76%)
Frame = -3 / +3
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K+ N P++ MT+CGN P+FKDGKGCGSCY++RC++ CSG TV ITDMNY P+APY
Sbjct: 222 KHTNQYPFASMTSCGNQPLFKDGKGCGSCYKIRCRKDQSCSGRTETVIITDMNYYPVAPY 401
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQ 851
HFDLSG AFG LAKPGLND++RH GI+D+EF R P Q
Sbjct: 402 HFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRGAVGVPGAQ 527
Score = 122 bits (261), Expect(3) = 2e-036
Identities = 55/82 (67%), Positives = 60/82 (73%)
Frame = +3 / -2
Query: 882 LNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEHSGFSLHL 1061
+NS SMMP+WR LSLSPGFA P A+PL+SKW*GA G *FMSVM TV+ LPE LHL
Sbjct: 496 VNSMSMMPEWRSLSLSPGFASLPNAVPLRSKW*GATG**FMSVMITVSVLPEQDWSFLHL 317
Query: 1062 TS*HEPQPLPSLKMGTLPHAVM 1127
*HEP PLPSL G LP VM
Sbjct: 316 IL*HEPHPLPSLNNGWLPQEVM 251
Score = 35.4 bits (71), Expect(3) = 2e-036
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2 / -1
Query: 1145 VHVLDPARTAVVRSAGTVGLTVPGGPSGEP 1234
V VL+ A T VV AG +GL VPG P P
Sbjct: 233 VGVLEAAGTTVVVGAGAIGLAVPGRPGRGP 144
Score = 34.5 bits (69), Expect(3) = 4e-050
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G KI FH+ + P Y AVLV DGD+V + + +
Sbjct: 520 GLKIGFHVXEYSXPVYFAVLVXXQDGDGDVVQVXLME 630
Score = 33.6 bits (67), Expect(3) = 2e-036
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2 / -3
Query: 752 DFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
+ H H VAV HQH +V G L VE DL P
Sbjct: 624 EVHLHHVAVAVLXXHQHREVDGXRVLXHVEPDLEP 520
Score = 29.5 bits (58), Expect(3) = 4e-050
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / +3
Query: 1252 TNYNGKWLTARATWY 1208
T Y G W ARATWY
Sbjct: 126 TKYWGPWTPARATWY 170
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 100 bits (213), Expect(3) = 4e-050
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = -3 / +2
Query: 1006 DMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
DMNY P+APYHFDLSG AFG LAKPGLND++RH GI+D+EF RV C++P
Sbjct: 2 DMNYYPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFP 148
Score = 90.9 bits (192), Expect(3) = 4e-050
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = -3 / +2
Query: 763 LMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPD 584
LME + +W M+ SWG++WR+D+ L+ PFSIR+ +ESGK ++A VIPANWRP+
Sbjct: 251 LMESRGPGGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPN 430
Query: 583 AVYTSNVQF 557
Y S VQ+
Sbjct: 431 TFYRSFVQY 457
Score = 79.0 bits (166), Expect(3) = 3e-029
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMS 1007
G H T +NS SMMP+WR LSLSPGFA P A+PL+SKW*GA G *FMS
Sbjct: 147 GNSHGTRVNSMSMMPEWRSLSLSPGFASLPNAVPLRSKW*GATG**FMS 1
Score = 73.9 bits (155), Expect(4) = 1e-021
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = +2 / -1
Query: 866 LASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHV 1006
LA HP ELDV DA VA VVEPGLC+ AE AA+VEVVG R+VVHV
Sbjct: 142 LARHPCELDVDDAGVAEPVVEPGLCEPAERRAAEVEVVGRHRVVVHV 2
Score = 63.4 bits (132), Expect(3) = 5e-024
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = -2 / +1
Query: 1004 HELRAYRSLPLRLERQGLRLPGKARAQRQDSPLRHHGRRVQKGAMQVP 861
HEL +LPLR +R G+R KARAQRQ PLRHH RV GA++VP
Sbjct: 4 HELLPGGALPLRPQRHGVRQARKARAQRQAPPLRHHRHRVHTGAVRVP 147
Score = 51.5 bits (106), Expect(3) = 5e-024
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = -2 / +1
Query: 731 VEAHEALLGRHLEDGHCQGAQGPLLHPPHQRVRQEGHRQRRHPGELETRCRLHFQRPILL 552
V+ E ++G L G +LHP QRVRQ+ RQ+ HPG+LE + L R + L
Sbjct: 283 VDEDEGVVGLRLAPRLQPPPPGAILHPHPQRVRQDARRQQGHPGQLEAQHLLPLLRAVQL 462
Query: 551 DFEFPS 534
+PS
Sbjct: 463 KSLYPS 480
Score = 46.4 bits (95), Expect(3) = 4e-050
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G KI FH+E+ NP Y AVLV+Y DGD+V +++ +
Sbjct: 149 GLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLME 259
Score = 46.0 bits (94), Expect(3) = 3e-029
Identities = 26/56 (46%), Positives = 29/56 (51%)
Frame = +3 / -2
Query: 564 TLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFH 731
T E * GLQ AGMT LA + LPDSL RME G S Q P +S + H
Sbjct: 450 TKER*KVLGLQLAGMTLLATSVLPDSLRMRMENGAWRRWLESRRQTEPHDSLILVH 283
Score = 42.3 bits (86), Expect(3) = 3e-029
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +2 / -1
Query: 752 DFHQHDVAVVRHILHQHGQVVGVAALLDVEHDLLP 856
+ H H VAV +LHQH +V GV LL VE DL P
Sbjct: 253 EVHLHHVAVAVLVLHQHREVDGVRVLLHVEPDLEP 149
Score = 34.5 bits (69), Expect(3) = 5e-024
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -2 / +1
Query: 854 AEDRVPHREGLQPQLPGRAGEVCGGRRRHRADGNPG 747
A+DRVP L+P+L AG V G RRR A G G
Sbjct: 151 AQDRVPRGGVLEPRLLRGAGGVRGRRRRRGAGGPHG 258
Score = 29.9 bits (59), Expect(4) = 1e-021
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3 / -2
Query: 783 ATYFTSTAR*LGLQPFSMWNTIFCP 857
++Y TSTA+* G + S WN I P
Sbjct: 222 SSYSTSTAK*TGFEYSSTWNPILSP 148
Score = 28.1 bits (55), Expect(4) = 1e-021
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2 / -1
Query: 560 LDVGSVDGIGSPVRRDDV 613
L G+V+G+G PV RDD+
Sbjct: 454 LHEGAVEGVGPPVGRDDL 401
Score = 26.3 bits (51), Expect(4) = 1e-021
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2 / -1
Query: 686 VHPPDGAPRELHGLPLS 736
V PDGAPR H PLS
Sbjct: 328 VEAPDGAPRLPHPRPLS 278
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 198 bits (426), Expect = 8e-050
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 192 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 371
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 372 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 551
Query: 874 RCKYP 860
C++P
Sbjct: 552 PCEFP 566
Score = 116 bits (247), Expect = 4e-025
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 565 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 386
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 385 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 269
>gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42H09
5-PRIME, mRNA sequence
Length = 567
Score = 198 bits (426), Expect = 8e-050
Identities = 74/125 (59%), Positives = 90/125 (72%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 189 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 368
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 369 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 548
Query: 874 RCKYP 860
C++P
Sbjct: 549 PCEFP 563
Score = 116 bits (247), Expect = 4e-025
Identities = 57/99 (57%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 562 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 383
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 382 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 266
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020K03f,
mRNA sequence
Length = 679
Score = 197 bits (424), Expect = 2e-049
Identities = 74/128 (57%), Positives = 91/128 (71%)
Frame = -3 / +2
Query: 1243 NGKWLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYE 1064
+G W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY+
Sbjct: 179 SGGWEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQ 358
Query: 1063 VRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEF 884
+RC CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+ H GI+D++F
Sbjct: 359 IRCTNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLPHSGIIDIQF 538
Query: 883 RRVRCKYP 860
+RV C++P
Sbjct: 539 KRVPCEFP 562
Score = 112 bits (240), Expect = 4e-024
Identities = 56/99 (56%), Positives = 62/99 (62%)
Frame = +3 / -2
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 561 GNSHGTLLNWMSMMPECGSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 382
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 381 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 265
>gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_H22 5', mRNA sequence
Length = 631
Score = 177 bits (381), Expect(3) = 2e-049
Identities = 65/99 (65%), Positives = 80/99 (80%)
Frame = -3 / +3
Query: 1156 KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPY 977
K+VN P+S MT+CGN P+FKDGKGCGSCY++RC CSGN TV ITDMNY P+A Y
Sbjct: 273 KHVNQYPFSSMTSCGNQPLFKDGKGCGSCYQIRCSGDRSCSGNIETVMITDMNYYPVAQY 452
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG+LAK GLN+K+RH GI+D++F+RV C +P
Sbjct: 453 HFDLSGTAFGALAKSGLNEKLRHSGIIDIQFKRVPCNFP 569
Score = 117 bits (251), Expect(2) = 2e-026
Identities = 58/99 (58%), Positives = 63/99 (63%)
Frame = +3 / -1
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G LH TLLN SMMP+WR SL P AR PKA+PL+SKW A G *FMSV+ TV+ LPE
Sbjct: 568 GKLHGTLLNWMSMMPEWRSFSLRPDLARAPKAVPLRSKWYWATG**FMSVIITVSMLPEQ 389
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
LH * EPQPLPSL G LP VM G FT L
Sbjct: 388 ERSPLHRIW*QEPQPLPSLNRGWLPQEVMEEKGYWFTCL 272
Score = 108 bits (230), Expect = 9e-023
Identities = 59/128 (46%), Positives = 67/128 (52%)
Frame = +2 / -3
Query: 851 LPGGVLASHPSELDVHDAAVANLVVEPGLCQGAEGLAAQVEVVGSDRLVVHVSDVHRDWI 1030
L G +A HP ELDV DA VA L+VE L QGAEG AAQV+VV DR+VVHV D HR +
Sbjct: 578 LEAGEVARHPLELDVDDARVAELLVEARLGQGAEGRAAQVKVVLGDRVVVHVGDHHRLDV 399
Query: 1031 ARALRFFLASHXXXXXXXXXXXXXXXXXXRRHAAVGWQVHVLDPARTAVVRSAGTVGLTV 1210
A A AS+ H G VHVL+ A AVV G VG +V
Sbjct: 398 AGAGAVAAASYLVAGAAALAVLEQGLVAAGGHGGEGVLVHVLEAASAAVVVGPGAVGRSV 219
Query: 1211 PGGPSGEP 1234
PG EP
Sbjct: 218 PGRSGREP 195
Score = 29.5 bits (58), Expect(3) = 2e-049
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / +3
Query: 1249 NYNGKWLTARATWY 1208
+Y+ WL ARATWY
Sbjct: 180 SYSSAWLPARATWY 221
Score = 28.6 bits (56), Expect(3) = 2e-049
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVL 797
G KI FH+ +G N YLAVL
Sbjct: 570 GLKINFHVVEGSNAVYLAVL 629
Score = 22.1 bits (42), Expect(2) = 2e-026
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3 / -1
Query: 798 STAR*LGLQPFSMWNTIFCP 857
STAR L+P + W I P
Sbjct: 628 STARYTALEPSTTWKLILRP 569
>gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L19 5', mRNA sequence
Length = 411
Score = 196 bits (423), Expect = 2e-049
Identities = 72/136 (52%), Positives = 100/136 (73%)
Frame = -3 / +3
Query: 1078 GSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGI 899
GSC+E++C + CSG P V ITD N EPIA YHFDLSG AFG++AK G K+R G
Sbjct: 3 GSCFELKCTKPEACSGEPTIVTITDKNEEPIAAYHFDLSGHAFGTMAKKGQEQKLRDAGE 182
Query: 898 MDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPM 719
++++FRRV+CKYP G K+ FH+EKG +PNYLA+++K++ DGD+V ++I+ K +W +
Sbjct: 183 VEIKFRRVKCKYPEGTKVNFHVEKGSSPNYLALVIKFLQGDGDVVAVDIKPKGKDKWIEL 362
Query: 718 KLSWGAIWRMDTAKAL 671
K SWGA+WR+DT L
Sbjct: 363 KESWGAVWRIDTPDKL 410
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 138 bits (296), Expect(2) = 3e-049
Identities = 51/100 (51%), Positives = 71/100 (71%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 677
G K+ FH+E+G NP Y AVLV+Y DGD+V +++ + S W PM+ SWG+IWR+D+
Sbjct: 122 GLKVTFHVEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGH 301
Query: 676 ALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 557
L+ PFS+R+T+ESGK ++A VIPANW P Y S VQ+
Sbjct: 302 RLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 421
Score = 78.0 bits (164), Expect(2) = 3e-049
Identities = 26/40 (65%), Positives = 37/40 (92%)
Frame = -3 / +2
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV C++P
Sbjct: 2 YHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFP 121
Score = 74.4 bits (156), Expect(2) = 3e-023
Identities = 38/99 (38%), Positives = 47/99 (47%)
Frame = +3 / -3
Query: 561 WTLEV*TASGLQFAGMTSLAMTFLPDSLVRRMEKGPLSALAVSILQMAPQESFMGFHSAD 740
WT+E * G Q AGMT A + LPDSLV RMEKG S Q+ P +S +G H +
Sbjct: 417 WTMER*KVLGAQLAGMTLSATSVLPDSLVMRMEKGAWRRWPESSRQIDPHDSRIGVHVPE 238
Query: 741 NLXXXXXXXXXXXXATYFTSTAR*LGLQPFSMWNTIFCP 857
++Y TSTA+ G P S W P
Sbjct: 237 LASMRSTCTTSPSPSSYSTSTAKYTGFDPCSTWKVTLRP 121
Score = 55.1 bits (114), Expect(2) = 3e-023
Identities = 23/39 (58%), Positives = 26/39 (66%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW 977
G H TLLN SMMP+ R SL PG A P A+PL+SKW
Sbjct: 120 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKW 4
>gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0007P24f,
mRNA sequence
Length = 844
Score = 189 bits (407), Expect(2) = 4e-049
Identities = 71/125 (56%), Positives = 87/125 (69%)
Frame = -3 / +1
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G KN N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 193 WEDARATWYGAPTGAGPMDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 372
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
C NP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH G++D+ F+RV
Sbjct: 373 TNDQSCFRNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGLIDIPFKRV 552
Query: 874 RCKYP 860
C++P
Sbjct: 553 PCEFP 567
Score = 106 bits (227), Expect = 2e-022
Identities = 53/99 (53%), Positives = 61/99 (61%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN S+ P+ R SL PG A P A+PL+SKW A G *FMSVM TV+GL +
Sbjct: 566 GNSHGTLLNGMSIKPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLRKQ 387
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVMPL*GGRFTFL 1157
+H * EP PLPSLKMG+LPH VM G FL
Sbjct: 386 DWSLVHRIW*QEPHPLPSLKMGSLPHDVMEEKGYWLVFL 270
Score = 26.7 bits (52), Expect(2) = 4e-049
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3 / +2
Query: 745 KLSAEWKPMKLSWGAIWRMDTAKALKGPF 659
+L P SWG I +++ L+GPF
Sbjct: 677 QLXVRGPPFTKSWGIILAVESRPRLQGPF 763
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020P05f,
mRNA sequence
Length = 615
Score = 195 bits (421), Expect = 4e-049
Identities = 73/125 (58%), Positives = 89/125 (71%)
Frame = -3 / +3
Query: 1234 WLTARATWYXXXXXXXXXXXXXXXGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
W ARATWY G N N P+S MT+CGN PIFKDGKGCGSCY++RC
Sbjct: 183 WEDARATWYGAPTGAGPMDDGGACGFNNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRC 362
Query: 1054 KEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRV 875
CSGNP TV ITDMNY P+A YHFDLSG AFG++AKPGL++K+RH GI+D++F+RV
Sbjct: 363 TNDQSCSGNPETVVITDMNYYPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRV 542
Query: 874 RCKYP 860
C++P
Sbjct: 543 PCEFP 557
Score = 115 bits (245), Expect(2) = 5e-033
Identities = 54/89 (60%), Positives = 60/89 (67%)
Frame = +3 / -3
Query: 861 GYLHRTLLNSTSMMPQWRILSLSPGFAREPKALPLKSKW*GAIGS*FMSVMYTVTGLPEH 1040
G H TLLN SMMP+ R SL PG A P A+PL+SKW A G *FMSVM TV+GLPE
Sbjct: 556 GNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLATG**FMSVMTTVSGLPEQ 377
Query: 1041 SGFSLHLTS*HEPQPLPSLKMGTLPHAVM 1127
+H * EP PLPSLKMG+LPH VM
Sbjct: 376 DWSLVHRIW*QEPHPLPSLKMGSLPHDVM 290
Score = 46.9 bits (96), Expect(2) = 5e-033
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +2 / -2
Query: 1118 RRHAAVGWQVHVLDPARTAVVRSAGTVGLTVPGGPSGEPL 1237
R H G V V++PART VV AGT G VPGGP P+
Sbjct: 299 RCHGGEGVLVGVIEPARTTVVHGAGTRGRAVPGGPGVLPV 180
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 697,187,851
Number of Sequences: 312970
Number of extensions: 13694982
Number of successful extensions: 191181
Number of sequences better than 1.0e-020: 189
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 17384959904
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)