TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 271 2e-083
gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA li... 271 6e-080
gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-a... 271 7e-080
gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa... 271 3e-077
gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 ... 267 7e-071
gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA li... 221 8e-070
gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA li... 221 8e-070
gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA li... 221 2e-069
gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, red... 241 4e-063
gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-a... 237 6e-062
gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthe... 197 1e-055
gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA li... 166 4e-055
gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA li... 202 3e-051
gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, n... 127 3e-050
gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. v... 127 3e-046
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 182 6e-046
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 179 2e-044
gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA li... 177 1e-043
gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. v... 175 3e-043
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 160 1e-041
gb|AV930114.1|AV930114 AV930114 K. Sato unpublished cDNA li... 124 5e-041
gb|AV930104.1|AV930104 AV930104 K. Sato unpublished cDNA li... 120 8e-040
gb|AV930113.1|AV930113 AV930113 K. Sato unpublished cDNA li... 119 1e-039
gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachi... 116 2e-025
gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subs... 106 2e-025
gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. v... 103 3e-023
gb|BJ467008.1|BJ467008 BJ467008 K. Sato unpublished cDNA li... 64 2e-022
gb|BU985192.1|BU985192 HF06G12r HF Hordeum vulgare subsp. v... 64 2e-022
gb|AL509770.1|AL509770 AL509770 Hordeum vulgare Barke devel... 57 3e-022
gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 ... 103 1e-021
gb|BF256953.2|BF256953 HVSMEf0011H11f Hordeum vulgare seedl... 61 4e-021
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 271 bits (586), Expect(3) = 2e-083
Identities = 108/141 (76%), Positives = 118/141 (83%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 1579 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 1758
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALI
Sbjct: 1759 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALI 1938
Query: 472 SISDIKTGRFGIDKNTIFSAI 410
S++DI TGR+ IDKNTIFSA+
Sbjct: 1939 SLADIDTGRYSIDKNTIFSAV 2001
Score = 182 bits (393), Expect(3) = 6e-053
Identities = 85/167 (50%), Positives = 108/167 (64%)
Frame = -1 / +3
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 1605 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 1784
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRT 447
ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++
Sbjct: 1785 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQ 1964
Query: 446 VRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPKHQHREV 306
+ + EHHLL NV DT A+S+ET++ Q E+ K + +++
Sbjct: 1965 IFN**EHHLLSSSPNVPDTPTTAVSLETLKNQIPEHFISIKWREQQM 2105
Score = 145 bits (311), Expect(3) = 2e-039
Identities = 65/135 (48%), Positives = 82/135 (60%)
Frame = +2 / -1
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 1992 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 1813
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXX 778
RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL
Sbjct: 1812 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LC 1633
Query: 779 XLAXDXYGVXXRXXV 823
LA D G+ R +
Sbjct: 1632 KLAEDICGIEIRSTI 1588
Score = 122 bits (261), Expect(4) = 2e-047
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / -2
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 2072 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 1893
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 1892 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 1791
Score = 120 bits (256), Expect = 1e-026
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = -3 / +2
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 1610 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 1789
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLISKPDGS 442
+ R+QTL S EQW L LT + TQSL L+Q L WLQH*FL L S
Sbjct: 1790 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWLQH*FL*LTSILADI 1969
Query: 441 ASTRTPSSLRSLQC 400
RTPSS + QC
Sbjct: 1970 QLIRTPSSQQFPQC 2011
Score = 57.9 bits (120), Expect(4) = 2e-047
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / -3
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 1789 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 1610
Score = 44.1 bits (90), Expect(4) = 2e-047
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / -3
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 2380 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 2258
Score = 43.2 bits (88), Expect(3) = 2e-083
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / +3
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 2247 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 2393
Score = 41.4 bits (84), Expect(3) = 2e-083
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / +2
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 2180 SKDHKQKADNISLQSFYFCIGMTDHYK 2260
Score = 39.1 bits (79), Expect(3) = 2e-039
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +2 / -2
Query: 68 NNL*RYNFYKK*LHT*AGMPTATRPQKLAFTRCTQLLVYV*QRI 199
N+L RY+FYKK G+ TR K +FT TQL V+ *Q I
Sbjct: 2390 NDLQRYHFYKKNFTRELGI*RTTRTSKFSFTNRTQLPVHG*QMI 2259
Score = 32.7 bits (65), Expect(3) = 6e-053
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / +1
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 2197 ESRQHKLTEFLLLYRYDGSL* 2259
Score = 30.9 bits (61), Expect(3) = 6e-053
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / +1
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 2260 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 2361
Score = 30.9 bits (61), Expect(4) = 2e-047
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / -3
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 2260 FIMIRHTDTEVETL*AYVVCF 2198
Score = 24.0 bits (46), Expect(3) = 2e-039
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / -1
Query: 206 *SVIMVQK*KLYKLM 250
*SVI +QK*KL KLM
Sbjct: 2253 *SVIPIQK*KLCKLM 2209
>gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 3', mRNA sequence
Length = 684
Score = 271 bits (586), Expect(2) = 6e-080
Identities = 108/141 (76%), Positives = 118/141 (83%)
Frame = -2 / -3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 652 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 473
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALI
Sbjct: 472 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALI 293
Query: 472 SISDIKTGRFGIDKNTIFSAI 410
S++DI TGR+ IDKNTIFSA+
Sbjct: 292 SLADIDTGRYSIDKNTIFSAV 230
Score = 182 bits (393), Expect(2) = 3e-051
Identities = 85/167 (50%), Positives = 108/167 (64%)
Frame = -1 / -2
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 626 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 447
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRT 447
ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++
Sbjct: 446 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQ 267
Query: 446 VRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPKHQHREV 306
+ + EHHLL NV DT A+S+ET++ Q E+ K + +++
Sbjct: 266 IFN**EHHLLSSSPNVPDTPTTAVSLETLKNQIPEHFISIKWREQQM 126
Score = 145 bits (311), Expect(2) = 3e-036
Identities = 65/135 (48%), Positives = 82/135 (60%)
Frame = +2 / +2
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 239 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 418
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXX 778
RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL
Sbjct: 419 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LC 598
Query: 779 XLAXDXYGVXXRXXV 823
LA D G+ R +
Sbjct: 599 KLAEDICGIEIRSTI 643
Score = 122 bits (261), Expect(3) = 6e-044
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / +3
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 159 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 338
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 339 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 440
Score = 120 bits (256), Expect = 1e-026
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = -3 / -1
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 621 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 442
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLISKPDGS 442
+ R+QTL S EQW L LT + TQSL L+Q L WLQH*FL L S
Sbjct: 441 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWLQH*FL*LTSILADI 262
Query: 441 ASTRTPSSLRSLQC 400
RTPSS + QC
Sbjct: 261 QLIRTPSSQQFPQC 220
Score = 57.9 bits (120), Expect(3) = 6e-044
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / +1
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 442 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 621
Score = 49.2 bits (101), Expect(2) = 6e-080
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -3 / -1
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYKILCHT*TRSC 169
+K +KAD+ISL SFYFC MTD YK C T SC
Sbjct: 111 SKDHKQKADNISLQSFYFCIGMTDHYKSXCQPWTGSC 1
Score = 39.6 bits (80), Expect(2) = 3e-051
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -2 / -3
Query: 262 ESGQHKLIELLFLYHYDRSV*NPLSYIDQKL 170
ES QHKL E L LY YD S+* LS +D KL
Sbjct: 94 ESRQHKLTEFLLLYRYDGSL*IXLSTMDWKL 2
Score = 35.9 bits (72), Expect(3) = 6e-044
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1 / +1
Query: 169 TTSGLCMTEDFILICHNGTEIEAL*AYAVRF 261
TTS +T FI+I H TE+E L*AY V F
Sbjct: 1 TTSSPWLTX*FIMIRHTDTEVETL*AYVVCF 93
Score = 29.0 bits (57), Expect(2) = 3e-036
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +2 / +2
Query: 170 QLLVYV*QRILY*SVIMVQK*KLYKLM 250
QL V+ *Q L *SVI +QK*KL KLM
Sbjct: 2 QLPVHG*QXDL**SVIPIQK*KLCKLM 82
>gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002G13f, mRNA sequence
Length = 850
Score = 271 bits (586), Expect(2) = 7e-080
Identities = 108/141 (76%), Positives = 118/141 (83%)
Frame = -2 / +3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 75 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 254
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALI
Sbjct: 255 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALI 434
Query: 472 SISDIKTGRFGIDKNTIFSAI 410
S++DI TGR+ IDKNTIFSA+
Sbjct: 435 SLADIDTGRYSIDKNTIFSAV 497
Score = 174 bits (374), Expect(2) = 4e-046
Identities = 81/154 (52%), Positives = 100/154 (64%)
Frame = -1 / +2
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 101 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 280
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRT 447
ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++
Sbjct: 281 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQ 460
Query: 446 VRHRQEHHLLCDPSNVSDTAAAAISMETIERQTS 345
+ + EHHLL NV DT + +ET+++ S
Sbjct: 461 IFN**EHHLLSSSPNVPDTPTNGVRLETLKKSNS 562
Score = 145 bits (311), Expect = 3e-034
Identities = 65/135 (48%), Positives = 82/135 (60%)
Frame = +2 / -3
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 488 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 309
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXX 778
RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL
Sbjct: 308 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LC 129
Query: 779 XLAXDXYGVXXRXXV 823
LA D G+ R +
Sbjct: 128 KLAEDICGIEIRSTI 84
Score = 120 bits (256), Expect(2) = 1e-029
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = -3 / +1
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 106 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 285
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLISKPDGS 442
+ R+QTL S EQW L LT + TQSL L+Q L WLQH*FL L S
Sbjct: 286 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWLQH*FL*LTSILADI 465
Query: 441 ASTRTPSSLRSLQC 400
RTPSS + QC
Sbjct: 466 QLIRTPSSQQFPQC 507
Score = 109 bits (233), Expect(3) = 3e-042
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +3 / -1
Query: 414 AEKMVFLSMPNRPVLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTR 593
AEKMVFLS+ PV +S EI+AATRPAFAARVGSV*L*FVR SL PS LSGPATIAPTR
Sbjct: 493 AEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGSV*L*FVRISLKPSCLSGPATIAPTR 314
Query: 594 MLGFAFFVS 620
+LGFAF S
Sbjct: 313 ILGFAFLDS 287
Score = 57.9 bits (120), Expect(3) = 3e-042
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / -2
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 285 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 106
Score = 49.2 bits (101), Expect(2) = 7e-080
Identities = 26/52 (50%), Positives = 29/52 (55%)
Frame = -3 / +1
Query: 282 TAKARNRKADSISL*SFYFCTIMTDQYKILCHT*TRSCVHRVKANFWGLVAV 127
TAK NRK D+ISL FYFC MTD YK + S V VK F LV +
Sbjct: 616 TAKTLNRKPDTISLQKFYFCFGMTDHYKKSVNHGLGSWVRIVKLKFEALVGL 771
Score = 46.9 bits (96), Expect(3) = 3e-042
Identities = 24/51 (47%), Positives = 28/51 (54%)
Frame = +1 / -2
Query: 130 SNKTPKISFHAMHTTSGLCMTEDFILICHNGTEIEAL*AYAVRFPVPGLCC 282
+NK K FH H TS + FI+I H TE+E L*A V V GLCC
Sbjct: 768 TNKGLKF*FHNSHPTSQSMVDRFFIMIGHPETEVELL*ANGVWLSV*GLCC 616
Score = 30.9 bits (61), Expect(2) = 4e-046
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2 / +3
Query: 283 YSKGQEQESGQHKLIELLFLYHYDRSV*NPLSYIDQKLCASRES*FLGSC 134
YSK +Q++ H L ++L L+ DRS+* KL A+ E+ G C
Sbjct: 615 YSKDPKQKARHH*LTKVLLLFRDDRSL*KICQPWTGKLGANCETKI*GPC 764
Score = 29.9 bits (59), Expect(2) = 1e-029
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1 / +2
Query: 284 VQQRPGTGKRTA*AYRASISVPL*QISIKSSVIHRPEVVC 165
+QQRP T +T AY++S SV * I IK+ EV C
Sbjct: 614 IQQRP*TESQTPLAYKSSTSVSG*PIIIKNLSTMDWEVGC 733
>gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023G06f, mRNA sequence
Length = 815
Score = 271 bits (586), Expect(3) = 3e-077
Identities = 108/141 (76%), Positives = 118/141 (83%)
Frame = -2 / +3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 99 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 278
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALI
Sbjct: 279 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALI 458
Query: 472 SISDIKTGRFGIDKNTIFSAI 410
S++DI TGR+ IDKNTIFSA+
Sbjct: 459 SLADIDTGRYSIDKNTIFSAV 521
Score = 182 bits (393), Expect = 2e-045
Identities = 85/167 (50%), Positives = 108/167 (64%)
Frame = -1 / +2
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 125 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 304
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRT 447
ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++
Sbjct: 305 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQ 484
Query: 446 VRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPKHQHREV 306
+ + EHHLL NV DT A+S+ET++ Q E+ K + +++
Sbjct: 485 IFN**EHHLLSSSPNVPDTPTTAVSLETLKNQIPEHFISIKWREQQM 625
Score = 145 bits (311), Expect(2) = 2e-036
Identities = 65/135 (48%), Positives = 82/135 (60%)
Frame = +2 / -1
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 512 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 333
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXX 778
RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL
Sbjct: 332 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LC 153
Query: 779 XLAXDXYGVXXRXXV 823
LA D G+ R +
Sbjct: 152 KLAEDICGIEIRSTI 108
Score = 122 bits (261), Expect(4) = 4e-045
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / -2
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 592 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 413
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 412 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 311
Score = 120 bits (256), Expect = 1e-026
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = -3 / +1
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 130 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 309
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLISKPDGS 442
+ R+QTL S EQW L LT + TQSL L+Q L WLQH*FL L S
Sbjct: 310 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWLQH*FL*LTSILADI 489
Query: 441 ASTRTPSSLRSLQC 400
RTPSS + QC
Sbjct: 490 QLIRTPSSQQFPQC 531
Score = 57.9 bits (120), Expect(4) = 4e-045
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / -3
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 309 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 130
Score = 36.3 bits (73), Expect(3) = 3e-077
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -3 / +1
Query: 264 RKADSISL*SFYFCTIMTDQYK 199
++AD+ISL SFYFC +TD YK
Sbjct: 655 QEADNISLQSFYFCIGLTDHYK 720
Score = 30.4 bits (60), Expect(4) = 4e-045
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3 / -3
Query: 105 FTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
FT E Q P+N + + AHNF SM DR F
Sbjct: 813 FTRELGI*DHQGPQNLVLQLAHNFQSMVDR*F 718
Score = 29.9 bits (59), Expect(2) = 2e-036
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1 / -1
Query: 103 TSHMSRNANSNKTPKISFHAMHTTSGLCMTED 198
TSH++ + K KI F+ HTTS +T+D
Sbjct: 815 TSHVNLGYKTTKDLKI*FYNWHTTSSPWLTDD 720
Score = 27.2 bits (53), Expect(4) = 4e-045
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1 / -3
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I TE+E L*AY V F
Sbjct: 720 FIMIRQTDTEVETL*AYVVCF 658
Score = 24.4 bits (47), Expect(3) = 3e-077
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3 / +3
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*S 103
I+C T SCV V+ NF L + HV*S
Sbjct: 720 IICQPWTGSCVPIVELNFEVLGGLISQVHV*S 815
>gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M02f, mRNA sequence
Length = 641
Score = 267 bits (577), Expect = 7e-071
Identities = 107/141 (75%), Positives = 117/141 (82%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 130 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 309
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALI
Sbjct: 310 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALI 489
Query: 472 SISDIKTGRFGIDKNTIFSAI 410
S++DI TGR+ I KNTIFSA+
Sbjct: 490 SLADIDTGRYSIYKNTIFSAV 552
Score = 182 bits (392), Expect = 2e-045
Identities = 85/161 (52%), Positives = 104/161 (64%)
Frame = -1 / +3
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 156 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 335
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRT 447
ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++
Sbjct: 336 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQ 515
Query: 446 VRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPK 324
+ + EHHLL NV DT A+S+ET++ Q E+ K
Sbjct: 516 IFNL*EHHLLSSSPNVPDTPTTAVSLETLKNQIPEHFISIK 638
Score = 145 bits (311), Expect = 3e-034
Identities = 65/135 (48%), Positives = 82/135 (60%)
Frame = +2 / -3
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 543 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 364
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXX 778
RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL
Sbjct: 363 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LC 184
Query: 779 XLAXDXYGVXXRXXV 823
LA D G+ R +
Sbjct: 183 KLAEDICGIEIRSTI 139
Score = 120 bits (256), Expect = 1e-026
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = -3 / +2
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 161 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 340
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLISKPDGS 442
+ R+QTL S EQW L LT + TQSL L+Q L WLQH*FL L S
Sbjct: 341 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWLQH*FL*LTSILADI 520
Query: 441 ASTRTPSSLRSLQC 400
RTPSS + QC
Sbjct: 521 QFIRTPSSQQFPQC 562
Score = 118 bits (253), Expect(2) = 1e-037
Identities = 61/94 (64%), Positives = 66/94 (70%)
Frame = +3 / -1
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFL + PV +S EI+AATRPAFAARVGS
Sbjct: 623 MFRNLILQGFQADGGGGGVRNIGGTAEKMVFL*IEYLPVSMSAKEINAATRPAFAARVGS 444
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 443 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 342
Score = 57.9 bits (120), Expect(2) = 1e-037
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / -2
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 340 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 161
>gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 3', mRNA sequence
Length = 663
Score = 221 bits (478), Expect(3) = 8e-070
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -2 / -3
Query: 706 KYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNY 527
KYPKR HHRGASIPHNGVKYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNY
Sbjct: 661 KYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNY 482
Query: 526 NYTEPTLAANAGLVAALISISDIKTGRFGIDKNTIFSAI 410
NYTEPTLAANAGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 481 NYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAV 365
Score = 147 bits (315), Expect(3) = 2e-042
Identities = 67/134 (50%), Positives = 88/134 (65%)
Frame = -1 / -2
Query: 707 QVPEAPSPQRCLDTS*RRQVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHEL 528
+VP+A S QR ++ S*R Q+WMQRR ME E KP*+P SNG W *QA* LQR PH+L
Sbjct: 662 EVPQACSSQRGINPS*RCQIWMQRRF*MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKL 483
Query: 527 QLHRAYPCGKRWSGCSTDFYI*YQNRTVRHRQEHHLLCDPSNVSDTAAAAISMETIERQT 348
QLHRAY C K W GCS DF+ *++ + + EHHLL NV DT A+S+ET++ Q
Sbjct: 482 QLHRAYSCSKCWPGCSIDFFS*HRYWQIFN**EHHLLSSSPNVPDTPTTAVSLETLKNQI 303
Query: 347 SEYIFPPKHQHREV 306
E+ K + +++
Sbjct: 302 PEHFISIKWREQQM 261
Score = 122 bits (261), Expect(4) = 3e-044
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / +3
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 294 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 473
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 474 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 575
Score = 108 bits (230), Expect(3) = 9e-030
Identities = 48/96 (50%), Positives = 59/96 (61%)
Frame = +2 / +2
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 374 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 553
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVL 706
RVC LR+ PF TSFASI D VMR SV+ L VL
Sbjct: 554 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVL 661
Score = 44.1 bits (90), Expect(4) = 3e-044
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 46 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 168
Score = 43.2 bits (88), Expect(3) = 8e-070
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / -2
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 179 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 33
Score = 41.4 bits (84), Expect(3) = 8e-070
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -1
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 246 SKDHKQKADNISLQSFYFCIGMTDHYK 166
Score = 39.1 bits (79), Expect(3) = 9e-030
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 68 NNL*RYNFYKK*LHT*AGMPTATRPQKLAFTRCTQLLVYV*QRI 199
N+L RY+FYKK G+ TR K +FT TQL V+ *Q I
Sbjct: 36 NDLQRYHFYKKNFTRELGI*RTTRTSKFSFTNRTQLPVHG*QMI 167
Score = 37.3 bits (75), Expect(4) = 3e-044
Identities = 18/28 (64%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGT 705
SI NLLCIH * RYE LC E A GT
Sbjct: 577 SI*NLLCIHI*HRYEGLMPLCDEHAWGT 660
Score = 32.7 bits (65), Expect(3) = 2e-042
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / -3
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 229 ESRQHKLTEFLLLYRYDGSL* 167
Score = 30.9 bits (61), Expect(3) = 2e-042
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / -3
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 166 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 65
Score = 30.9 bits (61), Expect(4) = 3e-044
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +1
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 166 FIMIRHTDTEVETL*AYVVCF 228
Score = 24.0 bits (46), Expect(3) = 9e-030
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / +2
Query: 206 *SVIMVQK*KLYKLM 250
*SVI +QK*KL KLM
Sbjct: 173 *SVIPIQK*KLCKLM 217
>gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 3', mRNA sequence
Length = 663
Score = 221 bits (478), Expect(3) = 8e-070
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -2 / -2
Query: 706 KYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNY 527
KYPKR HHRGASIPHNGVKYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNY
Sbjct: 662 KYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNY 483
Query: 526 NYTEPTLAANAGLVAALISISDIKTGRFGIDKNTIFSAI 410
NYTEPTLAANAGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 482 NYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAV 366
Score = 147 bits (315), Expect(3) = 2e-042
Identities = 67/134 (50%), Positives = 88/134 (65%)
Frame = -1 / -1
Query: 707 QVPEAPSPQRCLDTS*RRQVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHEL 528
+VP+A S QR ++ S*R Q+WMQRR ME E KP*+P SNG W *QA* LQR PH+L
Sbjct: 663 EVPQACSSQRGINPS*RCQIWMQRRF*MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKL 484
Query: 527 QLHRAYPCGKRWSGCSTDFYI*YQNRTVRHRQEHHLLCDPSNVSDTAAAAISMETIERQT 348
QLHRAY C K W GCS DF+ *++ + + EHHLL NV DT A+S+ET++ Q
Sbjct: 483 QLHRAYSCSKCWPGCSIDFFS*HRYWQIFN**EHHLLSSSPNVPDTPTTAVSLETLKNQI 304
Query: 347 SEYIFPPKHQHREV 306
E+ K + +++
Sbjct: 303 PEHFISIKWREQQM 262
Score = 122 bits (261), Expect(4) = 3e-044
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / +1
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 295 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 474
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 475 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 576
Score = 108 bits (230), Expect(3) = 9e-030
Identities = 48/96 (50%), Positives = 59/96 (61%)
Frame = +2 / +3
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 375 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 554
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVL 706
RVC LR+ PF TSFASI D VMR SV+ L VL
Sbjct: 555 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVL 662
Score = 44.1 bits (90), Expect(4) = 3e-044
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 47 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 169
Score = 43.2 bits (88), Expect(3) = 8e-070
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / -1
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 180 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 34
Score = 41.4 bits (84), Expect(3) = 8e-070
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -3
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 247 SKDHKQKADNISLQSFYFCIGMTDHYK 167
Score = 39.1 bits (79), Expect(3) = 9e-030
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +2 / +1
Query: 68 NNL*RYNFYKK*LHT*AGMPTATRPQKLAFTRCTQLLVYV*QRI 199
N+L RY+FYKK G+ TR K +FT TQL V+ *Q I
Sbjct: 37 NDLQRYHFYKKNFTRELGI*RTTRTSKFSFTNRTQLPVHG*QMI 168
Score = 37.3 bits (75), Expect(4) = 3e-044
Identities = 18/28 (64%), Positives = 18/28 (64%)
Frame = +1 / +2
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGT 705
SI NLLCIH * RYE LC E A GT
Sbjct: 578 SI*NLLCIHI*HRYEGLMPLCDEHAWGT 661
Score = 32.7 bits (65), Expect(3) = 2e-042
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / -2
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 230 ESRQHKLTEFLLLYRYDGSL* 168
Score = 30.9 bits (61), Expect(3) = 2e-042
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / -2
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 167 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 66
Score = 30.9 bits (61), Expect(4) = 3e-044
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +2
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 167 FIMIRHTDTEVETL*AYVVCF 229
Score = 24.0 bits (46), Expect(3) = 9e-030
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / +3
Query: 206 *SVIMVQK*KLYKLM 250
*SVI +QK*KL KLM
Sbjct: 174 *SVIPIQK*KLCKLM 218
>gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9a10 3', mRNA sequence
Length = 664
Score = 221 bits (478), Expect(3) = 2e-069
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -2 / -1
Query: 706 KYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNY 527
KYPKR HHRGASIPHNGVKYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNY
Sbjct: 661 KYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNY 482
Query: 526 NYTEPTLAANAGLVAALISISDIKTGRFGIDKNTIFSAI 410
NYTEPTLAANAGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 481 NYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAV 365
Score = 147 bits (315), Expect(3) = 2e-042
Identities = 67/134 (50%), Positives = 88/134 (65%)
Frame = -1 / -3
Query: 707 QVPEAPSPQRCLDTS*RRQVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHEL 528
+VP+A S QR ++ S*R Q+WMQRR ME E KP*+P SNG W *QA* LQR PH+L
Sbjct: 662 EVPQACSSQRGINPS*RCQIWMQRRF*MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKL 483
Query: 527 QLHRAYPCGKRWSGCSTDFYI*YQNRTVRHRQEHHLLCDPSNVSDTAAAAISMETIERQT 348
QLHRAY C K W GCS DF+ *++ + + EHHLL NV DT A+S+ET++ Q
Sbjct: 482 QLHRAYSCSKCWPGCSIDFFS*HRYWQIFN**EHHLLSSSPNVPDTPTTAVSLETLKNQI 303
Query: 347 SEYIFPPKHQHREV 306
E+ K + +++
Sbjct: 302 PEHFISIKWREQQM 261
Score = 122 bits (261), Expect(4) = 3e-044
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / +3
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 294 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 473
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 474 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 575
Score = 108 bits (231), Expect(3) = 7e-030
Identities = 48/97 (49%), Positives = 60/97 (61%)
Frame = +2 / +2
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 374 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 553
Query: 599 RVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLV 709
RVC LR+ PF TSFASI D VMR SV+ L VL+
Sbjct: 554 RVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLL 664
Score = 44.1 bits (90), Expect(4) = 3e-044
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 46 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 168
Score = 42.3 bits (86), Expect(3) = 2e-069
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = -2 / -3
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIV 68
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL ++
Sbjct: 179 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VI 36
Score = 41.4 bits (84), Expect(3) = 2e-069
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -2
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 246 SKDHKQKADNISLQSFYFCIGMTDHYK 166
Score = 39.1 bits (79), Expect(3) = 7e-030
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 68 NNL*RYNFYKK*LHT*AGMPTATRPQKLAFTRCTQLLVYV*QRI 199
N+L RY+FYKK G+ TR K +FT TQL V+ *Q I
Sbjct: 36 NDLQRYHFYKKNFTRELGI*RTTRTSKFSFTNRTQLPVHG*QMI 167
Score = 37.3 bits (75), Expect(4) = 3e-044
Identities = 18/28 (64%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGT 705
SI NLLCIH * RYE LC E A GT
Sbjct: 577 SI*NLLCIHI*HRYEGLMPLCDEHAWGT 660
Score = 32.7 bits (65), Expect(3) = 2e-042
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / -1
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 229 ESRQHKLTEFLLLYRYDGSL* 167
Score = 30.9 bits (61), Expect(3) = 2e-042
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / -1
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 166 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 65
Score = 30.9 bits (61), Expect(4) = 3e-044
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +1
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 166 FIMIRHTDTEVETL*AYVVCF 228
Score = 24.0 bits (46), Expect(3) = 7e-030
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / +2
Query: 206 *SVIMVQK*KLYKLM 250
*SVI +QK*KL KLM
Sbjct: 173 *SVIPIQK*KLCKLM 217
>gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_F03 5', mRNA sequence
Length = 499
Score = 241 bits (521), Expect = 4e-063
Identities = 96/125 (76%), Positives = 104/125 (83%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 124 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 303
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALI
Sbjct: 304 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALI 483
Query: 472 SISDI 458
S++DI
Sbjct: 484 SLADI 498
Score = 149 bits (320), Expect = 2e-035
Identities = 69/116 (59%), Positives = 80/116 (68%)
Frame = -1 / +3
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 150 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 329
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*Y 459
ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *+
Sbjct: 330 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*H 497
Score = 135 bits (289), Expect = 4e-031
Identities = 60/122 (49%), Positives = 74/122 (60%)
Frame = +2 / -2
Query: 458 DIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDVRVCLLRVPPFVTS 637
D+ RNQCCNQ S+C K RLC VR S+HCS++D+RVC LR+ PF TS
Sbjct: 498 DVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDIRVCFLRLSPFKTS 319
Query: 638 FASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXXXLAXDXYGVXXRX 817
FASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL LA D G+ R
Sbjct: 318 FASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LCKLAEDICGIEIRS 139
Query: 818 XV 823
+
Sbjct: 138 TI 133
Score = 111 bits (238), Expect = 4e-024
Identities = 60/115 (52%), Positives = 66/115 (57%)
Frame = -3 / +2
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 155 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 334
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLIS 457
+ R+QTL S EQW L LT + TQSL L+Q L WLQH*FL L S
Sbjct: 335 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWLQH*FL*LTS 499
Score = 90.4 bits (191), Expect(2) = 4e-029
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +3 / -3
Query: 471 EISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
EI+AATRPAFAARVGSV*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 485 EINAATRPAFAARVGSV*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 336
Score = 57.9 bits (120), Expect(2) = 4e-029
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / -1
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 334 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 155
>gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004M14f, mRNA sequence
Length = 562
Score = 237 bits (512), Expect = 6e-062
Identities = 95/129 (73%), Positives = 104/129 (80%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 175 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 354
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYT+PTLAANAGL A LI
Sbjct: 355 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTKPTLAANAGLGATLI 534
Query: 472 SISDIKTGR 446
S++DI T R
Sbjct: 535 SLADIDTCR 561
Score = 147 bits (315), Expect = 9e-035
Identities = 67/117 (57%), Positives = 81/117 (69%)
Frame = -1 / +3
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 201 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 380
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQ 456
ME E KP*+P SNG W *QA* LQR PH+LQLH+AY C K W GC+ DF+ *++
Sbjct: 381 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHKAYSCSKCWPGCNIDFFS*HR 551
Score = 133 bits (284), Expect = 2e-030
Identities = 59/125 (47%), Positives = 74/125 (59%)
Frame = +2 / -2
Query: 449 SGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDVRVCLLRVPPF 628
+ D+ RNQCC Q S+C K RLC VR S+HCS++D+RVC LR+ PF
Sbjct: 558 ASIDVS*RNQCCTQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDIRVCFLRLSPF 379
Query: 629 VTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQWVLXXDVVKLXXXXLAXDXYGVX 808
TSFASI D VMR SV+ L VL+ +TH VAHL WVL +V+KL LA D G+
Sbjct: 378 KTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLWVLA*NVIKL*LCKLAEDICGIE 199
Query: 809 XRXXV 823
R +
Sbjct: 198 IRSTI 184
Score = 110 bits (235), Expect = 1e-023
Identities = 59/115 (51%), Positives = 66/115 (57%)
Frame = -3 / +2
Query: 801 P*XSXASXXXXSLTTSXXRTH*R*ATXWVSXTSTRSALTTEVPRYLITASSMDAKEVTNG 622
P S AS SL T RTH R*AT WV ST S TE + LIT S+MDAKEV NG
Sbjct: 206 PQMSSASLQSHSLITF*ARTHKR*ATSWVLERSTPSVFITEGHQSLITVSNMDAKEVLNG 385
Query: 621 GTRRRQTLTSLLEQWWLALTGVXXXXXXXXXXXTQSLPLRQTLVWLQH*FLYLIS 457
+ R+QTL S EQW L LT + TQSL L+Q L W+QH*FL L S
Sbjct: 386 ESLRKQTLISSSEQWLLGLTSMMASKISAQITITQSLLLQQMLAWVQH*FL*LTS 550
Score = 84.0 bits (177), Expect(2) = 3e-027
Identities = 42/56 (75%), Positives = 45/56 (80%)
Frame = +3 / -3
Query: 453 VLISDIEISAATRPAFAARVGSV*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V +S EI+ A RPAFAARVG V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 554 VSMSAKEINVAPRPAFAARVGFV*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 387
Score = 57.9 bits (120), Expect(2) = 3e-027
Identities = 28/60 (46%), Positives = 29/60 (48%)
Frame = +1 / -1
Query: 622 SICNLLCIHT*RRYEVSRHLCGEGASGTCXRNPXRXXXXXXXXXXXXQAXXXXTCXGXLW 801
SI NLLCIH * RYE LC E A GT +NP R QA TC G LW
Sbjct: 385 SI*NLLCIHI*HRYEGLMPLCDEHAWGTSFQNPRRSSSFVGSCLECNQAVTLQTCGGHLW 206
>gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I10 5', mRNA sequence
Length = 512
Score = 197 bits (424), Expect(2) = 1e-055
Identities = 76/89 (85%), Positives = 86/89 (96%)
Frame = -2 / +1
Query: 676 ASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAAN 497
ASIPHNGVKYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAAN
Sbjct: 1 ASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAAN 180
Query: 496 AGLVAALISISDIKTGRFGIDKNTIFSAI 410
AGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 181 AGLVAALISLADIDTGRYSIDKNTIFSAV 267
Score = 135 bits (289), Expect(2) = 5e-035
Identities = 61/123 (49%), Positives = 80/123 (65%)
Frame = -1 / +3
Query: 674 LDTS*RRQVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKR 495
++ S*R Q+WMQRR ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K
Sbjct: 3 INPS*RCQIWMQRRF*MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKC 182
Query: 494 WSGCSTDFYI*YQNRTVRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPKHQH 315
W GCS DF+ *++ + + EHHLL NV DT A+S+ET++ Q E+ K +
Sbjct: 183 WPGCSIDFFS*HRYWQIFN**EHHLLSSSPNVPDTPTTAVSLETLKNQIPEHFISIKWRE 362
Query: 314 REV 306
+++
Sbjct: 363 QQM 371
Score = 122 bits (261), Expect(4) = 2e-035
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +3 / -1
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 338 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 159
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+LGFAF S
Sbjct: 158 V*L*FVRISLKPSCLSGPATIAPTRILGFAFLDS 57
Score = 104 bits (222), Expect(2) = 9e-023
Identities = 43/83 (51%), Positives = 53/83 (63%)
Frame = +2 / -3
Query: 419 EDGVLVDAEPSGFDIRYRNQCCNQTSVCRKGRLCXXXXXXXXXXXXTPVRASHHCSNKDV 598
EDGVL++ + D+ RNQCCNQ S+C K RLC VR S+HCS++D+
Sbjct: 258 EDGVLIN*ISASIDVS*RNQCCNQASICCKSRLCVIVICADIFEAIMLVRPSNHCSDEDI 79
Query: 599 RVCLLRVPPFVTSFASILDAVMR 667
RVC LR+ PF TSFASI D VMR
Sbjct: 78 RVCFLRLSPFKTSFASIFDTVMR 10
Score = 41.4 bits (84), Expect(2) = 1e-055
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / +2
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 386 SKDHKQKADNISLQSFYFCIGMTDHYK 466
Score = 32.7 bits (65), Expect(2) = 5e-035
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / +1
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 403 ESRQHKLTEFLLLYRYDGSL* 465
Score = 30.9 bits (61), Expect(4) = 2e-035
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / -2
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 466 FIMIRHTDTEVETL*AYVVCF 404
Score = 28.6 bits (56), Expect(4) = 2e-035
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1 / -2
Query: 622 SICNLLCIHT*RRYE 666
SI NLLCIH * RYE
Sbjct: 55 SI*NLLCIHI*HRYE 11
Score = 24.0 bits (46), Expect(2) = 9e-023
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2 / -3
Query: 206 *SVIMVQK*KLYKLM 250
*SVI +QK*KL KLM
Sbjct: 459 *SVIPIQK*KLCKLM 415
Score = 23.1 bits (44), Expect(4) = 2e-035
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / -3
Query: 154 FHAMHTTSGLCMTED 198
FH HTTS +T+D
Sbjct: 510 FHKSHTTSSPWLTDD 466
>gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 3', mRNA sequence
Length = 569
Score = 166 bits (357), Expect(3) = 4e-055
Identities = 65/81 (80%), Positives = 75/81 (92%)
Frame = -2 / -1
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KYG KGG+KWR++KKAN NILVGAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLV ALI
Sbjct: 512 KYGXKGGFKWRESKKANXNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVXALI 333
Query: 472 SISDIKTGRFGIDKNTIFSAI 410
S++DI TGR+ IDKNTIFSA+
Sbjct: 332 SLADIDTGRYSIDKNTIFSAV 270
Score = 123 bits (263), Expect(2) = 6e-031
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = -1 / -3
Query: 653 QVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTD 474
Q+W QRR ME E KP*+P SNG W *QA* LQR PH+LQLHRAY C K W G S D
Sbjct: 513 QIWXQRRF*MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGXSID 334
Query: 473 FYI*YQNRTVRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPKHQHRE 309
F+ *++ + + EHHLL NV DT A+S+ET++ Q E+ K + ++
Sbjct: 333 FFS*HRYWQIFN**EHHLLSSSPNVPDTPTXAVSLETLKNQIXEHFISIKWREQQ 169
Score = 114 bits (244), Expect(2) = 8e-031
Identities = 59/94 (62%), Positives = 64/94 (68%)
Frame = +3 / +1
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+F L L GF AD AEKMVFLS+ PV +S EI+A TRPAFAARVGS
Sbjct: 199 MFXNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAXTRPAFAARVGS 378
Query: 519 V*L*FVRTSL*PSRLSGPATIAPTRMLGFAFFVS 620
V*L*FVR SL PS LSGPATIAPTR+L FAF S
Sbjct: 379 V*L*FVRISLKPSCLSGPATIAPTRILXFAFLDS 480
Score = 45.5 bits (93), Expect(3) = 4e-055
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -2 / -3
Query: 706 KYPKRPHHRGASIPHNG 656
KYPKR HHRGASIPHNG
Sbjct: 567 KYPKRVHHRGASIPHNG 517
Score = 44.6 bits (91), Expect(3) = 4e-055
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = -3 / -3
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYKILCHT*TRSCVHRVKANF 145
+K +KA +ISL SF FC MTD YK + SCV VK NF
Sbjct: 150 SKDHKQKAXNISLQSFXFCIGMTDHYKSSVNHGLASCVRFVKLNF 16
Score = 39.1 bits (79), Expect(2) = 8e-031
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1 / +1
Query: 145 KISFHAMHTTSGLCMTEDFILICHNGTEIEAL*AY 249
KI FH HTT + FI+I H TE+E L*AY
Sbjct: 16 KI*FHKSHTTCQSMVDR*FIMIRHTDTEVETL*AY 120
Score = 30.9 bits (61), Expect(2) = 6e-031
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2 / -2
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E LY YD S+*
Sbjct: 133 ESXQHKLTEFXLLYRYDGSL* 71
>gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 5', mRNA sequence
Length = 607
Score = 202 bits (435), Expect = 3e-051
Identities = 78/105 (74%), Positives = 84/105 (80%)
Frame = -2 / +3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 291 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 470
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYT 518
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+KD+RTNYNYT
Sbjct: 471 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYT 605
Score = 119 bits (255), Expect = 2e-026
Identities = 58/97 (59%), Positives = 67/97 (69%)
Frame = -1 / +2
Query: 806 LHHXXPXQVXXXXA*LHPXXEPIEDELRCGFRKQVPEAPSPQRCLDTS*RRQVWMQRRLQ 627
L+H P QV A*LH EP +DELR GF K+VP+A S QR ++ S*R Q+WMQRR
Sbjct: 317 LYHRCPPQVCKVTA*LHSRQEPTKDELRRGFWKEVPQACSSQRGINPS*RCQIWMQRRF* 496
Query: 626 MEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHR 516
ME E KP*+P SNG W *QA* LQR PH+LQLHR
Sbjct: 497 MERV*ESKP*YPRRSNGCWA*QA*WLQRYPHKLQLHR 607
Score = 103 bits (219), Expect = 2e-021
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +2 / -3
Query: 563 VRASHHCSNKDVRVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQW 742
VR S+HCS++D+RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL W
Sbjct: 560 VRPSNHCSDEDIRVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLW 381
Query: 743 VLXXDVVKLXXXXLAXDXYGVXXRXXV 823
VL +V+KL LA D G+ R +
Sbjct: 380 VLA*NVIKL*LCKLAEDICGIEIRSTI 300
>gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_L24 5', mRNA sequence
Length = 620
Score = 127 bits (271), Expect(3) = 3e-050
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = -2 / +1
Query: 658 GVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAA 479
G+ GCKGG+ WRDTKK NP+I+VGAMVAGPDR DG+KD+R N NYTEPTLA NAGLVAA
Sbjct: 190 GIHPGCKGGWTWRDTKKPNPHIIVGAMVAGPDRHDGFKDIRKNRNYTEPTLAGNAGLVAA 369
Query: 478 LISIS 464
L+++S
Sbjct: 370 LVALS 384
Score = 90.4 bits (191), Expect(3) = 8e-022
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = -1 / +3
Query: 659 RRQVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCS 480
R W+QR + +EGH+E +P H CWS GGWP* *R+QR P E QLHR P G+ WS C
Sbjct: 189 RYSPWLQRGVDVEGHQEAQPSHHCWSYGGWP*SP*RVQRHPKEPQLHRTNPSGQCWSSCC 368
Query: 479 TDFYI 465
+I
Sbjct: 369 VGSFI 383
Score = 78.0 bits (164), Expect(3) = 3e-050
Identities = 32/56 (57%), Positives = 35/56 (62%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
P Y P Y+I VL Q++YI KNPLKMSY VG YPKR HHRGASIP
Sbjct: 13 PGWYCGPHFYSIEVLRSFARTQMEYILGKNPLKMSYVVGHGKHYPKRVHHRGASIP 180
Score = 32.2 bits (64), Expect(3) = 3e-050
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1 / +3
Query: 434 QEHHLLCDPSNVSDTAAAAISMETI 360
QEHH+LC +NV AA+ +ME I
Sbjct: 405 QEHHVLCCAANVPFAPAASSTMEAI 479
Score = 25.4 bits (49), Expect(3) = 8e-022
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
G+DKNT+FSA+
Sbjct: 397 GVDKNTMFSAV 429
Score = 25.4 bits (49), Expect(3) = 8e-022
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1 / +3
Query: 761 LHPXXEPIEDELRCGFRKQVPEAPSPQRCLD 669
+H + EDEL RK +P+A S C+D
Sbjct: 84 VHLGQKSFEDELCGRARKALPQACSSPWCVD 176
>gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
3-PRIME, mRNA sequence
Length = 620
Score = 127 bits (271), Expect(3) = 3e-046
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = -2 / -3
Query: 658 GVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAA 479
G+ GCKGG+ WRDTKK NP+I+VGAMVAGPDR DG+KD+R N NYTEPTLA NAGLVAA
Sbjct: 489 GIHPGCKGGWTWRDTKKPNPHIIVGAMVAGPDRHDGFKDIRKNRNYTEPTLAGNAGLVAA 310
Query: 478 LISIS 464
L+++S
Sbjct: 309 LVALS 295
Score = 90.4 bits (191), Expect(3) = 8e-022
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = -1 / -2
Query: 659 RRQVWMQRRLQMEGHEEGKP*HPCWSNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCS 480
R W+QR + +EGH+E +P H CWS GGWP* *R+QR P E QLHR P G+ WS C
Sbjct: 490 RYSPWLQRGVDVEGHQEAQPSHHCWSYGGWP*SP*RVQRHPKEPQLHRTNPSGQCWSSCC 311
Query: 479 TDFYI 465
+I
Sbjct: 310 VGSFI 296
Score = 64.8 bits (135), Expect(3) = 3e-046
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -2 / -3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q++YI KNPLKMSY VG YPKR HHRGASIP
Sbjct: 603 QMEYILGKNPLKMSYVVGHGKHYPKRVHHRGASIP 499
Score = 32.2 bits (64), Expect(3) = 3e-046
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1 / -2
Query: 434 QEHHLLCDPSNVSDTAAAAISMETI 360
QEHH+LC +NV AA+ +ME I
Sbjct: 274 QEHHVLCCAANVPFAPAASSTMEAI 200
Score = 25.4 bits (49), Expect(3) = 8e-022
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 442 GIDKNTIFSAI 410
G+DKNT+FSA+
Sbjct: 282 GVDKNTMFSAV 250
Score = 25.4 bits (49), Expect(3) = 8e-022
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1 / -2
Query: 761 LHPXXEPIEDELRCGFRKQVPEAPSPQRCLD 669
+H + EDEL RK +P+A S C+D
Sbjct: 595 VHLGQKSFEDELCGRARKALPQACSSPWCVD 503
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 182 bits (391), Expect(2) = 6e-046
Identities = 72/129 (55%), Positives = 88/129 (68%)
Frame = -2 / +2
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P T+ L QL+YI NP+KMSY VG+ KYPKR HHRGAS P NG+
Sbjct: 86 PGWYCGPNFMTVDDLRSFAKSQLNYILGDNPMKMSYVVGYGKKYPKRLHHRGASTPKNGI 265
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KY C GG KWRD+KKA+P++L GAMV GPD+ D +KD R +Y EPTL NAGLVAAL+
Sbjct: 266 KYSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAGLVAALV 445
Query: 472 SISDIKTGR 446
+I++ GR
Sbjct: 446 AITNSGRGR 472
Score = 22.6 bits (43), Expect(2) = 6e-046
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 439 IDKNTIFSAI 410
+DKNT+FSA+
Sbjct: 485 VDKNTMFSAV 514
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 179 bits (385), Expect = 2e-044
Identities = 70/124 (56%), Positives = 86/124 (69%)
Frame = -2 / +3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P T+ L QL+YI NP+KMSY VG+ KYPKR HHRGAS P NG+
Sbjct: 36 PGWYCGPNFMTVDDLRSFAKSQLNYILGDNPMKMSYVVGYGKKYPKRLHHRGASTPKNGI 215
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KY C GG KWRD+KKA+P++L GAMV GPD+ D +KD R +Y EPTL NAGLVAAL+
Sbjct: 216 KYSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAGLVAALV 395
Query: 472 SISD 461
+I++
Sbjct: 396 AITN 407
>gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 5', mRNA sequence
Length = 507
Score = 177 bits (380), Expect = 1e-043
Identities = 69/95 (72%), Positives = 74/95 (77%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 223 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 402
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGY 548
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG+
Sbjct: 403 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGF 507
Score = 103 bits (219), Expect = 2e-021
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +2 / -1
Query: 563 VRASHHCSNKDVRVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQW 742
VR S+HCS++D+RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL W
Sbjct: 492 VRPSNHCSDEDIRVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLW 313
Query: 743 VLXXDVVKLXXXXLAXDXYGVXXRXXV 823
VL +V+KL LA D G+ R +
Sbjct: 312 VLA*NVIKL*LCKLAEDICGIEIRSTI 232
>gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E02
5-PRIME, mRNA sequence
Length = 583
Score = 175 bits (377), Expect = 3e-043
Identities = 69/94 (73%), Positives = 73/94 (77%)
Frame = -2 / +3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNGV
Sbjct: 300 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGV 479
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDG 551
KYGCKGG+KWR++KKANPNILVGAMVAGPD+ DG
Sbjct: 480 KYGCKGGFKWRESKKANPNILVGAMVAGPDKHDG 581
Score = 103 bits (219), Expect = 2e-021
Identities = 46/87 (52%), Positives = 58/87 (66%)
Frame = +2 / -3
Query: 563 VRASHHCSNKDVRVCLLRVPPFVTSFASILDAVMRYRGTSVVRALRVLVXETHXVAHLQW 742
VR S+HCS++D+RVC LR+ PF TSFASI D VMR SV+ L VL+ +TH VAHL W
Sbjct: 569 VRPSNHCSDEDIRVCFLRLSPFKTSFASIFDTVMRD*CPSVMNTLGVLLSKTHDVAHLLW 390
Query: 743 VLXXDVVKLXXXXLAXDXYGVXXRXXV 823
VL +V+KL LA D G+ R +
Sbjct: 389 VLA*NVIKL*LCKLAEDICGIEIRSTI 309
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 160 bits (345), Expect(2) = 1e-041
Identities = 61/98 (62%), Positives = 75/98 (76%)
Frame = -2 / -2
Query: 742 PLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPD 563
P+KMSY VG+ KYPKR HHRGAS P NG+KY C GG KWRD+KKA+P++L GAMV GPD
Sbjct: 648 PMKMSYVVGYGKKYPKRLHHRGASTPKNGIKYSCTGGNKWRDSKKADPHVLTGAMVGGPD 469
Query: 562 RRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
+ D +KD R +Y EPTL NAGLVAAL++I++ G
Sbjct: 468 KNDKFKDARISYAQNEPTLVGNAGLVAALVAITNSGRG 355
Score = 29.5 bits (58), Expect(2) = 1e-041
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / -1
Query: 443 RHRQEHHLLCDPSNVSDTAAAAISMETIER 354
R RQEHH+L ++V AAA +E + R
Sbjct: 343 RRRQEHHVLRRAAHVPGRPAAAGHVEAVRR 254
>gb|AV930114.1|AV930114 AV930114 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p12 3', mRNA sequence
Length = 539
Score = 124 bits (265), Expect(3) = 5e-041
Identities = 49/59 (83%), Positives = 56/59 (94%)
Frame = -2 / -1
Query: 586 GAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTGRFGIDKNTIFSAI 410
GAMVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 539 GAMVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAV 363
Score = 105 bits (223), Expect(3) = 7e-030
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -1 / -3
Query: 584 SNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRTVRHRQEHHLLCDPS 405
SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++ + + EHHLL
Sbjct: 537 SNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQIFN**EHHLLSSSP 358
Query: 404 NVSDTAAAAISMETIERQTSEYIFPPKHQHREV 306
NV DT A+S+ET++ Q E+ K + +++
Sbjct: 357 NVPDTPTTAVSLETLKNQIPEHFISIKWREQQM 259
Score = 101 bits (216), Expect(3) = 2e-032
Identities = 53/82 (64%), Positives = 57/82 (69%)
Frame = +3 / +1
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 292 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 471
Query: 519 V*L*FVRTSL*PSRLSGPATIA 584
V*L*FVR SL PS LSGPATIA
Sbjct: 472 V*L*FVRISLKPSCLSGPATIA 537
Score = 44.1 bits (90), Expect(3) = 2e-032
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 44 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 166
Score = 43.2 bits (88), Expect(3) = 5e-041
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / -3
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 177 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 31
Score = 41.4 bits (84), Expect(3) = 5e-041
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -2
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 244 SKDHKQKADNISLQSFYFCIGMTDHYK 164
Score = 32.7 bits (65), Expect(3) = 7e-030
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / -1
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 227 ESRQHKLTEFLLLYRYDGSL* 165
Score = 30.9 bits (61), Expect(3) = 7e-030
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / -1
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 164 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 63
Score = 30.9 bits (61), Expect(3) = 2e-032
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +2
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 164 FIMIRHTDTEVETL*AYVVCF 226
>gb|AV930104.1|AV930104 AV930104 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17o24 3', mRNA sequence
Length = 540
Score = 120 bits (256), Expect(3) = 8e-040
Identities = 48/59 (81%), Positives = 55/59 (93%)
Frame = -2 / -1
Query: 586 GAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTGRFGIDKNTIFSAI 410
GAMVAG D+ DG+KD+RTNYNYTEPTLAANAGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 540 GAMVAGXDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAV 364
Score = 105 bits (223), Expect(3) = 7e-030
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -1 / -3
Query: 584 SNGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRTVRHRQEHHLLCDPS 405
SNG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++ + + EHHLL
Sbjct: 538 SNGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQIFN**EHHLLSSSP 359
Query: 404 NVSDTAAAAISMETIERQTSEYIFPPKHQHREV 306
NV DT A+S+ET++ Q E+ K + +++
Sbjct: 358 NVPDTPTTAVSLETLKNQIPEHFISIKWREQQM 260
Score = 98.7 bits (209), Expect(3) = 2e-031
Identities = 52/82 (63%), Positives = 56/82 (68%)
Frame = +3 / +2
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 293 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 472
Query: 519 V*L*FVRTSL*PSRLSGPATIA 584
V*L*FVR SL PS LS PATIA
Sbjct: 473 V*L*FVRISLKPSCLSXPATIA 538
Score = 44.1 bits (90), Expect(3) = 2e-031
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +3
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 45 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 167
Score = 43.2 bits (88), Expect(3) = 8e-040
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / -3
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 178 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 32
Score = 41.4 bits (84), Expect(3) = 8e-040
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -2
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 245 SKDHKQKADNISLQSFYFCIGMTDHYK 165
Score = 32.7 bits (65), Expect(3) = 7e-030
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / -1
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 228 ESRQHKLTEFLLLYRYDGSL* 166
Score = 30.9 bits (61), Expect(3) = 7e-030
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / -1
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 165 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 64
Score = 30.9 bits (61), Expect(3) = 2e-031
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +3
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 165 FIMIRHTDTEVETL*AYVVCF 227
>gb|AV930113.1|AV930113 AV930113 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17p11 3', mRNA sequence
Length = 522
Score = 119 bits (255), Expect(3) = 1e-039
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2 / -2
Query: 580 MVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTGRFGIDKNTIFSAI 410
MVAGPD+ DG+KD+RTNYNYTEPTLAANAGLVAALIS++DI TGR+ IDKNTIFSA+
Sbjct: 521 MVAGPDKHDGFKDIRTNYNYTEPTLAANAGLVAALISLADIDTGRYSIDKNTIFSAV 351
Score = 103 bits (219), Expect(3) = 2e-029
Identities = 44/92 (47%), Positives = 59/92 (64%)
Frame = -1 / -1
Query: 581 NGGWP*QA*RLQRCPHELQLHRAYPCGKRWSGCSTDFYI*YQNRTVRHRQEHHLLCDPSN 402
NG W *QA* LQR PH+LQLHRAY C K W GCS DF+ *++ + + EHHLL N
Sbjct: 522 NGCWA*QA*WLQRYPHKLQLHRAYSCSKCWPGCSIDFFS*HRYWQIFN**EHHLLSSSPN 343
Query: 401 VSDTAAAAISMETIERQTSEYIFPPKHQHREV 306
V DT A+S+ET++ Q E+ K + +++
Sbjct: 342 VPDTPTTAVSLETLKNQIPEHFISIKWREQQM 247
Score = 100 bits (212), Expect(3) = 9e-032
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = +3 / +1
Query: 339 IFRGLSLYGFHADXXXXXXXXXXXXAEKMVFLSMPNRPVLISDIEISAATRPAFAARVGS 518
+FR L L GF AD AEKMVFLS+ PV +S EI+AATRPAFAARVGS
Sbjct: 280 MFRNLILQGFQADGGGGGVGNIGGTAEKMVFLSIEYLPVSMSAKEINAATRPAFAARVGS 459
Query: 519 V*L*FVRTSL*PSRLSGPATI 581
V*L*FVR SL PS LSGPATI
Sbjct: 460 V*L*FVRISLKPSCLSGPATI 522
Score = 44.1 bits (90), Expect(3) = 9e-032
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +2
Query: 78 KGTISTKNNFTHEQECQQQQDPKN*LSRDAHNFWSMYDRGF 200
KGTISTK ++QQ P+N +S+ AHNF SM DR F
Sbjct: 32 KGTISTKRTSHVNLGYEEQQGPQNLVSQIAHNFQSMVDR*F 154
Score = 43.2 bits (88), Expect(3) = 1e-039
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / -1
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 165 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 19
Score = 41.4 bits (84), Expect(3) = 1e-039
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -3
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 232 SKDHKQKADNISLQSFYFCIGMTDHYK 152
Score = 32.7 bits (65), Expect(3) = 2e-029
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2 / -2
Query: 262 ESGQHKLIELLFLYHYDRSV* 200
ES QHKL E L LY YD S+*
Sbjct: 215 ESRQHKLTEFLLLYRYDGSL* 153
Score = 30.9 bits (61), Expect(3) = 2e-029
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3 / -2
Query: 198 ILCHT*TRSCVHRVKANFWGLVAVGIPAHV*SYF 97
I+C T SCV VK NF LV + IP+ +F
Sbjct: 152 IICQPWTGSCVRFVKLNFEVLVVLHIPSSRVKFF 51
Score = 30.9 bits (61), Expect(3) = 9e-032
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / +2
Query: 199 FILICHNGTEIEAL*AYAVRF 261
FI+I H TE+E L*AY V F
Sbjct: 152 FIMIRHTDTEVETL*AYVVCF 214
>gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002L24f, mRNA sequence
Length = 831
Score = 116 bits (248), Expect = 2e-025
Identities = 47/78 (60%), Positives = 49/78 (62%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT L K QLDYI KNP KMSY VGF KYPKR HHRGASIPHNG
Sbjct: 133 PGWYCGPNFYTTGGLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGG 312
Query: 652 KYGCKGGYKWRDTKKANP 599
KYGCKGG+ W + P
Sbjct: 313 KYGCKGGFGWERGCQCTP 366
>gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012H05F1, mRNA sequence
Length = 477
Score = 106 bits (226), Expect(2) = 2e-025
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -2 / +2
Query: 655 VKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAAL 476
+KY C GG KWRD+KKA+P++L GAMV GPD+ D +KD R +Y EPTL NAGLVAAL
Sbjct: 5 IKYSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAGLVAAL 184
Query: 475 ISISDIKTG 449
++I++ G
Sbjct: 185 VAITNSGRG 211
Score = 29.5 bits (58), Expect(2) = 2e-025
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +1
Query: 443 RHRQEHHLLCDPSNVSDTAAAAISMETIER 354
R RQEHH+L ++V AAA +E + R
Sbjct: 223 RRRQEHHVLRRAAHVPGRPAAAGHVEAVRR 312
>gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K09
5-PRIME, mRNA sequence
Length = 509
Score = 103 bits (220), Expect(2) = 3e-023
Identities = 40/70 (57%), Positives = 51/70 (72%)
Frame = -2 / +1
Query: 658 GVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAA 479
G+K C GG KWRD+KKA+P++L GAMV GPD+ D +KD R +Y EPTL NAGLVAA
Sbjct: 13 GIKSSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAGLVAA 192
Query: 478 LISISDIKTG 449
L+ I++ G
Sbjct: 193 LVFITNSGRG 222
Score = 24.9 bits (48), Expect(2) = 3e-023
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1 / +2
Query: 434 QEHHLLCDPSNVSDTAAAAISMETIER 354
QEHH+L ++V AAA +E + R
Sbjct: 242 QEHHVLRRAAHVPGRPAAAGHVEAVRR 322
>gb|BJ467008.1|BJ467008 BJ467008 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35i04 3', mRNA sequence
Length = 786
Score = 64.3 bits (134), Expect(2) = 2e-022
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = -2 / -3
Query: 673 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
SI + + CK G + D+ NPN LVGA+V GP D Y D R +Y +EPT NA
Sbjct: 616 SIKDHPERMACKDGTPYYDSSSPNPNPLVGAIVGGPGEDDSYGDDRADYRKSEPTTYINA 437
Query: 493 GLVAAL 476
LV L
Sbjct: 436 PLVGVL 419
Score = 61.1 bits (127), Expect(2) = 2e-022
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = -2 / -3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q+DY+ NP+KMSY VG+ ++YP+R HHRG+S+P
Sbjct: 721 QIDYLLGDNPMKMSYMVGYGDRYPQRIHHRGSSLP 617
>gb|BU985192.1|BU985192 HF06G12r HF Hordeum vulgare subsp. vulgare cDNA clone HF06G12
5-PRIME, mRNA sequence
Length = 615
Score = 64.3 bits (134), Expect(2) = 2e-022
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = -2 / +3
Query: 673 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
SI + + CK G + D+ NPN LVGA+V GP D Y D R +Y +EPT NA
Sbjct: 240 SIKDHPERMACKDGTPYYDSSSPNPNPLVGAIVGGPGEDDSYGDDRADYRKSEPTTYINA 419
Query: 493 GLVAAL 476
LV L
Sbjct: 420 PLVGVL 437
Score = 61.1 bits (127), Expect(2) = 2e-022
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q+DY+ NP+KMSY VG+ ++YP+R HHRG+S+P
Sbjct: 135 QIDYLLGDNPMKMSYMVGYGDRYPQRIHHRGSSLP 239
>gb|AL509770.1|AL509770 AL509770 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02N05u 3',
mRNA sequence
Length = 625
Score = 56.5 bits (117), Expect(4) = 3e-022
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = -1 / -3
Query: 494 WSGCSTDFYI*YQNRTVRHRQEHHLLCDPSNVSDTAAAAISMETIERQTSEYIFPPKHQH 315
W GCS DF+ *++ + + EHHLL NV DT A+S+ET++ Q E+ K +
Sbjct: 482 WPGCSIDFFS*HRYWQIFN**EHHLLSSSPNVPDTPTTAVSLETLKNQIPEHFISIKWRE 303
Query: 314 REV 306
+++
Sbjct: 302 QQM 294
Score = 43.2 bits (88), Expect(4) = 3e-022
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -2 / -3
Query: 211 RSV*NPLSYIDQKLCASRES*FLGSCCCWHSCSCVKLFFVEIVPLQIVI 65
R + N LS +D KLCA E+ F G CC + ++ FVE+VPL +++
Sbjct: 212 RIIINHLSTMDWKLCAICETKF*GPCCSSYPKFTCEVLFVEMVPL*VIL 66
Score = 41.4 bits (84), Expect(4) = 3e-022
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -3 / -2
Query: 279 AKARNRKADSISL*SFYFCTIMTDQYK 199
+K +KAD+ISL SFYFC MTD YK
Sbjct: 279 SKDHKQKADNISLQSFYFCIGMTDHYK 199
Score = 21.7 bits (41), Expect(4) = 3e-022
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / -3
Query: 538 RTNYNYT 518
RTNYNYT
Sbjct: 530 RTNYNYT 510
>gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102H23f, mRNA sequence
Length = 726
Score = 103 bits (220), Expect = 1e-021
Identities = 44/78 (56%), Positives = 49/78 (62%)
Frame = -2 / +1
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P YT VL K QLDYI KNP KM+Y VGF K PKR H+R ASIP+NGV
Sbjct: 454 PGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMNYVVGFGKK*PKRVHYRRASIPYNGV 633
Query: 652 KYGCKGGYKWRDTKKANP 599
KYGCKGG+ K+ P
Sbjct: 634 KYGCKGGF*MERA*KSKP 687
>gb|BF256953.2|BF256953 HVSMEf0011H11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011H11f, mRNA sequence
Length = 819
Score = 61.1 bits (127), Expect(2) = 4e-021
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = -2 / +3
Query: 619 DTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
++K A+PN+LV A+V GPDR DG+ D R +Y EPTLAA A
Sbjct: 417 NSKGADPNVLVSALVGGPDRHDGFGDDRCSYQRAEPTLAAGA 542
Score = 60.2 bits (125), Expect(2) = 4e-021
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q+DY+ KNPL MSY VG +K+P HHRGASIP
Sbjct: 255 QVDYVLGKNPLSMSYMVGHSDKFPTHVHHRGASIP 359
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 327,456,515
Number of Sequences: 312970
Number of extensions: 4872823
Number of successful extensions: 45381
Number of sequences better than 1.0e-020: 45
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 9641756231
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)