TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subs... 95 2e-034
gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. v... 95 2e-034
gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthe... 95 3e-034
gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke devel... 95 3e-034
gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA li... 95 3e-034
gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. v... 95 3e-034
gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA li... 95 3e-034
gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA li... 95 3e-034
gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, n... 95 3e-034
gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA li... 95 3e-034
gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. v... 95 3e-034
gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. v... 95 3e-034
gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA li... 95 3e-034
gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. v... 95 3e-034
gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA li... 95 3e-034
gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. v... 95 3e-034
gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. v... 95 3e-034
gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, n... 85 9e-032
gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, ... 70 1e-030
gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-a... 77 5e-029
gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. v... 70 4e-027
gb|AJ460964.1|AJ460964 AJ460964 S00002 Hordeum vulgare subs... 72 2e-026
>gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028B08F2, mRNA sequence
Length = 420
Score = 94.5 bits (200), Expect(2) = 2e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 151 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 255
Score = 76.2 bits (160), Expect(2) = 2e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 254 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 153
Score = 69.8 bits (146), Expect(2) = 2e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +3
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 69 ECY*SLERICWHQREMFWMQQDSLSN*EG 155
Score = 67.0 bits (140), Expect(2) = 5e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +3
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 153 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 254
Score = 65.2 bits (136), Expect(2) = 5e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +1
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 67 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 156
Score = 61.1 bits (127), Expect(2) = 2e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 158 VTLSIG*TVLLHPKHFSLVPANALETLIAF 69
>gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60F17
5-PRIME, mRNA sequence
Length = 434
Score = 94.5 bits (200), Expect(2) = 2e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 250 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 354
Score = 76.2 bits (160), Expect(2) = 2e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 353 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 252
Score = 69.8 bits (146), Expect(2) = 2e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +3
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 168 ECY*SLERICWHQREMFWMQQDSLSN*EG 254
Score = 67.0 bits (140), Expect(2) = 6e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +3
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 252 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 353
Score = 65.2 bits (136), Expect(2) = 6e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +1
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 166 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 255
Score = 61.1 bits (127), Expect(2) = 2e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 257 VTLSIG*TVLLHPKHFSLVPANALETLIAF 168
>gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_K11 5', mRNA sequence
Length = 746
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 369 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 473
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 472 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 371
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 287 ECY*SLERICWHQREMFWMQQDSLSN*EG 373
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 371 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 472
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 285 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 374
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 376 VTLSIG*TVLLHPKHFSLVPANALETLIAF 287
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
mRNA sequence
Length = 697
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 411 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 515
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 514 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 413
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 329 ECY*SLERICWHQREMFWMQQDSLSN*EG 415
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 413 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 514
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 327 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 416
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 418 VTLSIG*TVLLHPKHFSLVPANALETLIAF 329
>gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 3', mRNA sequence
Length = 687
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 400 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 296
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +3
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 297 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 398
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / -2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 482 ECY*SLERICWHQREMFWMQQDSLSN*EG 396
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / -2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 398 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 297
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / -3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 484 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 395
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / +3
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 393 VTLSIG*TVLLHPKHFSLVPANALETLIAF 482
>gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
5-PRIME, mRNA sequence
Length = 679
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 470 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 574
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 573 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 472
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 388 ECY*SLERICWHQREMFWMQQDSLSN*EG 474
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 472 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 573
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 386 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 475
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 477 VTLSIG*TVLLHPKHFSLVPANALETLIAF 388
>gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 3', mRNA sequence
Length = 668
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 390 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 286
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 287 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 388
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / -2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 472 ECY*SLERICWHQREMFWMQQDSLSN*EG 386
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / -2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 388 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 287
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / -3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 474 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 385
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / +2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 383 VTLSIG*TVLLHPKHFSLVPANALETLIAF 472
>gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 3', mRNA sequence
Length = 658
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 389 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 285
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 286 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 387
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / -2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 471 ECY*SLERICWHQREMFWMQQDSLSN*EG 385
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / -2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 387 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 286
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / -3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 473 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 384
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / +1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 382 VTLSIG*TVLLHPKHFSLVPANALETLIAF 471
>gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_E02 5', mRNA sequence
Length = 646
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 424 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 528
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -3
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 527 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 426
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +3
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 342 ECY*SLERICWHQREMFWMQQDSLSN*EG 428
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +3
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 426 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 527
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +1
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 340 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 429
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -3
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 431 VTLSIG*TVLLHPKHFSLVPANALETLIAF 342
>gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 5', mRNA sequence
Length = 637
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 260 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 364
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 363 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 262
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 178 ECY*SLERICWHQREMFWMQQDSLSN*EG 264
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 262 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 363
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 176 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 265
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 267 VTLSIG*TVLLHPKHFSLVPANALETLIAF 178
>gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
5-PRIME, mRNA sequence
Length = 635
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 425 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 529
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -3
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 528 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 427
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 343 ECY*SLERICWHQREMFWMQQDSLSN*EG 429
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 427 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 528
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 341 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 430
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -3
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 432 VTLSIG*TVLLHPKHFSLVPANALETLIAF 343
>gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
3-PRIME, mRNA sequence
Length = 636
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / -2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 467 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 363
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 364 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 465
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / -1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 549 ECY*SLERICWHQREMFWMQQDSLSN*EG 463
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / -1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 465 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 364
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / -2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 551 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 462
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / +1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 460 VTLSIG*TVLLHPKHFSLVPANALETLIAF 549
>gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 5', mRNA sequence
Length = 634
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 455 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 559
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 558 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 457
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 373 ECY*SLERICWHQREMFWMQQDSLSN*EG 459
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 457 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 558
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 371 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 460
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 462 VTLSIG*TVLLHPKHFSLVPANALETLIAF 373
>gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
5-PRIME, mRNA sequence
Length = 584
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 408 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 512
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 511 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 410
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 326 ECY*SLERICWHQREMFWMQQDSLSN*EG 412
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 410 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 511
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 324 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 413
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 415 VTLSIG*TVLLHPKHFSLVPANALETLIAF 326
>gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 5', mRNA sequence
Length = 574
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 261 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 365
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -1
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 364 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 263
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 179 ECY*SLERICWHQREMFWMQQDSLSN*EG 265
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 263 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 364
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 177 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 266
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 268 VTLSIG*TVLLHPKHFSLVPANALETLIAF 179
>gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
5-PRIME, mRNA sequence
Length = 572
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 434 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 538
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / -3
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 537 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 436
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 352 ECY*SLERICWHQREMFWMQQDSLSN*EG 438
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 436 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 537
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 350 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 439
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -3
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 441 VTLSIG*TVLLHPKHFSLVPANALETLIAF 352
>gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
3-PRIME, mRNA sequence
Length = 550
Score = 94.5 bits (200), Expect(2) = 3e-034
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -3 / -2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 420 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 316
Score = 76.2 bits (160), Expect(2) = 3e-026
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +3 / +2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S PS AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 317 SLPSWAM*FEGLMVHPPWQHLKQLLWYMVLLTVT 418
Score = 69.8 bits (146), Expect(2) = 3e-034
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / -1
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 502 ECY*SLERICWHQREMFWMQQDSLSN*EG 416
Score = 67.0 bits (140), Expect(2) = 9e-025
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / -1
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWRVHHQPF LH RG+A
Sbjct: 418 GYCQ*HHVPQELLQMLPWRVHHQPFELHRPRGQA 317
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / -2
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 504 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 415
Score = 61.1 bits (127), Expect(2) = 3e-026
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / +2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 413 VTLSIG*TVLLHPKHFSLVPANALETLIAF 502
>gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_L10 5', mRNA sequence
Length = 464
Score = 85.4 bits (180), Expect(2) = 9e-032
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAH 14
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAH
Sbjct: 372 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAH 464
Score = 70.3 bits (147), Expect(2) = 1e-024
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +3 / -2
Query: 18 AM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
AM* EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 460 AM*FEGLMVHPPWQHLKQLLWYMVLLTVT 374
Score = 69.8 bits (146), Expect(2) = 9e-032
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 290 ECY*SLERICWHQREMFWMQQDSLSN*EG 376
Score = 65.2 bits (136), Expect(2) = 3e-023
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 288 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 377
Score = 61.1 bits (127), Expect(2) = 3e-023
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2 / +2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LH 21
G+C H+VPQELLQ+LPWRVHHQPF LH
Sbjct: 374 GYCQ*HHVPQELLQMLPWRVHHQPFELH 457
Score = 61.1 bits (127), Expect(2) = 1e-024
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 379 VTLSIG*TVLLHPKHFSLVPANALETLIAF 290
>gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_B17 5', mRNA sequence
Length = 631
Score = 69.8 bits (146), Expect(3) = 1e-030
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +3
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 345 ECY*SLERICWHQREMFWMQQDSLSN*EG 431
Score = 61.1 bits (127), Expect(3) = 7e-023
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -3
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 434 VTLSIG*TVLLHPKHFSLVPANALETLIAF 345
Score = 54.2 bits (112), Expect(3) = 1e-030
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHG 50
+VTVNNTMYHKSCFKCCHG
Sbjct: 427 RVTVNNTMYHKSCFKCCHG 483
Score = 47.8 bits (98), Expect(3) = 7e-023
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 51 PWQHLKQLLWYIVLLTVT 104
PWQHLKQLLWY+VLLTVT
Sbjct: 482 PWQHLKQLLWYMVLLTVT 429
Score = 46.0 bits (94), Expect(3) = 1e-030
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -3 / +2
Query: 52 GGCTISPSNYIAHEGKL 2
GGCTISPSNYIAHEGKL
Sbjct: 482 GGCTISPSNYIAHEGKL 532
Score = 34.5 bits (69), Expect(3) = 7e-023
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPP 53
S PS AM* EGLMVHPP
Sbjct: 531 SLPSWAM*FEGLMVHPP 481
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
Length = 828
Score = 76.7 bits (161), Expect(2) = 5e-029
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVNNTMYHKSCFKCCHGGCTI PSN +GKL
Sbjct: 535 RVTVNNTMYHKSCFKCCHGGCTIHPSNTSPTKGKL 639
Score = 69.8 bits (146), Expect(2) = 5e-029
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +3
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 453 ECY*SLERICWHQREMFWMQQDSLSN*EG 539
Score = 65.2 bits (136), Expect(2) = 4e-021
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +1
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 451 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 540
Score = 61.1 bits (127), Expect(2) = 4e-021
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 542 VTLSIG*TVLLHPKHFSLVPANALETLIAF 453
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/34 (70%), Positives = 25/34 (73%)
Frame = +3 / -2
Query: 3 SFPSCAM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
S P EG MV PPWQHLKQLLWY+VLLTVT
Sbjct: 638 SLPFVGDVFEG*MVQPPWQHLKQLLWYMVLLTVT 537
Score = 54.7 bits (113), Expect(2) = 4e-021
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2 / +3
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LHCARGEA 3
G+C H+VPQELLQ+LPWR+HH PF G+A
Sbjct: 537 GYCQ*HHVPQELLQMLPWRLHHSPFEYIAHEGQA 638
>gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D11
5-PRIME, mRNA sequence
Length = 631
Score = 70.3 bits (147), Expect(2) = 4e-027
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISP 32
+VTVNNTMYHKSCFKCCHGGCTISP
Sbjct: 555 RVTVNNTMYHKSCFKCCHGGCTISP 629
Score = 69.8 bits (146), Expect(2) = 4e-027
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +2
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQQDSLSN*EG
Sbjct: 473 ECY*SLERICWHQREMFWMQQDSLSN*EG 559
Score = 65.7 bits (137), Expect(2) = 4e-023
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3 / -1
Query: 30 EGLMVHPPWQHLKQLLWYIVLLTVT 104
EGLMVHPPWQHLKQLLWY+VLLTVT
Sbjct: 631 EGLMVHPPWQHLKQLLWYMVLLTVT 557
Score = 65.2 bits (136), Expect(2) = 7e-022
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3 / +3
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCSKTVYP ERV
Sbjct: 471 ENAIKVSSAFAGTREKCFGCSKTVYPIERV 560
Score = 61.1 bits (127), Expect(2) = 4e-023
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3 / -1
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TVLLHP HFSLVPA ALETL+AF
Sbjct: 562 VTLSIG*TVLLHPKHFSLVPANALETLIAF 473
Score = 57.4 bits (119), Expect(2) = 7e-022
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -2 / +2
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF 30
G+C H+VPQELLQ+LPWRVHHQPF
Sbjct: 557 GYCQ*HHVPQELLQMLPWRVHHQPF 631
>gb|AJ460964.1|AJ460964 AJ460964 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028B08F1, mRNA sequence
Length = 240
Score = 72.1 bits (151), Expect(2) = 2e-026
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIA 17
+VTV+NTMYHKSCF CC GGCTISPSNYIA
Sbjct: 151 RVTVHNTMYHKSCFTCCPGGCTISPSNYIA 240
Score = 64.3 bits (134), Expect(2) = 2e-026
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = -2 / +3
Query: 269 ECY*SLKRLCWHQREMCWMQQDSLSN*EG 183
ECY*SL+R+CWHQREM WMQ+DSLS *EG
Sbjct: 69 ECY*SLERICWHQREMFWMQRDSLSY*EG 155
Score = 62.5 bits (130), Expect(2) = 5e-022
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3 / +1
Query: 271 QNATKVSSAFAGTREKCVGCSKTVYPTERV 182
+NA KVSSAFAGTREKC GCS TVYP ERV
Sbjct: 67 ENAIKVSSAFAGTREKCFGCSATVYPIERV 156
Score = 62.0 bits (129), Expect(2) = 7e-022
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +3 / -2
Query: 18 AM*LEGLMVHPPWQHLKQLLWYIVLLTVT 104
AM*LEGLMVHPP QH+KQLLWY+VL TVT
Sbjct: 239 AM*LEGLMVHPPGQHVKQLLWYMVLWTVT 153
Score = 58.8 bits (122), Expect(2) = 5e-022
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = -2 / +3
Query: 104 GHC*QHYVPQELLQVLPWRVHHQPF*LH 21
G+C H+VPQELL +LPWRVHHQPF LH
Sbjct: 153 GYCP*HHVPQELLHMLPWRVHHQPFQLH 236
Score = 58.8 bits (122), Expect(2) = 7e-022
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3 / -2
Query: 180 LTLSVG*TVLLHPTHFSLVPAKALETLVAF 269
+TLS+G*TV LHP HFSLVPA ALETL+AF
Sbjct: 158 VTLSIG*TVALHPKHFSLVPANALETLIAF 69
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 188,343,448
Number of Sequences: 312970
Number of extensions: 2394331
Number of successful extensions: 72925
Number of sequences better than 1.0e-020: 29
length of database: 58,378,179
effective HSP length: 50
effective length of database: 42,729,679
effective search space used: 4059319505
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)