TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke devel... 344 5e-094
gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no... 344 5e-094
gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm libra... 344 5e-094
gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, wat... 317 7e-086
gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedl... 316 1e-085
gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgar... 312 2e-084
gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 ... 235 1e-068
gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke devel... 197 7e-050
gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. v... 146 1e-034
gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. v... 146 1e-034
>gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09T 5',
mRNA sequence
Length = 700
Score = 344 bits (745), Expect = 5e-094
Identities = 141/146 (96%), Positives = 145/146 (99%)
Frame = +1 / +1
Query: 91 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 270
FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 118 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 297
Query: 271 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 450
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 298 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 477
Query: 451 LVQDLKCFVFSLINLHFKIKPIQS*A 528
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 478 LVQDLKCFVFSLINLHFKIKPIQL*A 555
Score = 271 bits (587), Expect = 3e-072
Identities = 122/146 (83%), Positives = 126/146 (86%)
Frame = -3 / -3
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 554 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 375
Query: 347 ISSSCRPMRSGSGQLLSSSFMISDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 168
ISSSC P RSGSGQLLSSSF+IS+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 374 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 195
Query: 167 PSGRNSNSRNSCPNLPLCPT*YRR*N 90
PSGRNSNSRNS PNLPLCPT*YRR*N
Sbjct: 194 PSGRNSNSRNSWPNLPLCPT*YRR*N 117
Score = 166 bits (356), Expect = 2e-040
Identities = 70/111 (63%), Positives = 77/111 (69%)
Frame = +3 / +3
Query: 201 ERHHDPQXXXXXXXXXXXXQEDHPGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHH 380
ERHHDPQ +EDHPG+ +EGGRQQLA ARP R GARD HGQR H +HH
Sbjct: 228 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 407
Query: 381 FQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQANPVLSSI 533
QDRLPR P QQGPGG P LLLPRPG + RVFT+QPPL DQA LSS+
Sbjct: 408 LQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTYQPPL*DQAYSTLSSV 560
Score = 142 bits (304), Expect = 4e-033
Identities = 62/81 (76%), Positives = 73/81 (90%)
Frame = -2 / -2
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 555 SSKLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 376
Query: 348 DLELLSADAVGLRPVAVVLLH 286
+LELL ADAVGLRPVAVVLLH
Sbjct: 375 NLELLPADAVGLRPVAVVLLH 313
>gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G09 5', mRNA sequence
Length = 540
Score = 344 bits (745), Expect = 5e-094
Identities = 141/146 (96%), Positives = 145/146 (99%)
Frame = +1 / +3
Query: 91 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 270
FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 96 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 275
Query: 271 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 450
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 276 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 455
Query: 451 LVQDLKCFVFSLINLHFKIKPIQS*A 528
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 456 LVQDLKCFVFSLINLHFKIKPIQL*A 533
Score = 265 bits (574), Expect = 2e-070
Identities = 121/146 (82%), Positives = 125/146 (85%)
Frame = -3 / -3
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RS TR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 532 AQS*IGLILKWRLISENTKHLRSCTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 353
Query: 347 ISSSCRPMRSGSGQLLSSSFMISDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 168
ISSSC P RSGSGQLLSSSF+IS+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 352 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 173
Query: 167 PSGRNSNSRNSCPNLPLCPT*YRR*N 90
PSGRNSNSRNS PNLPLCPT*YRR*N
Sbjct: 172 PSGRNSNSRNSWPNLPLCPT*YRR*N 95
Score = 162 bits (348), Expect = 3e-039
Identities = 69/111 (62%), Positives = 76/111 (68%)
Frame = +3 / +2
Query: 201 ERHHDPQXXXXXXXXXXXXQEDHPGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHH 380
ERHHDPQ +EDHPG+ +EGGRQQLA ARP R GARD HGQR H +HH
Sbjct: 206 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 385
Query: 381 FQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQANPVLSSI 533
QDRLPR P QQGPGG P LLLPR G + RVFT+QPPL DQA LSS+
Sbjct: 386 LQDRLPR*RPDQQGPGGPPHLLLPRAGP*MFRVFTYQPPL*DQAYSTLSSV 538
Score = 138 bits (297), Expect = 3e-032
Identities = 61/81 (75%), Positives = 72/81 (88%)
Frame = -2 / -2
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++L EVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 533 SSKLNRLDLKVEVDK*KHETFKVLHEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 354
Query: 348 DLELLSADAVGLRPVAVVLLH 286
+LELL ADAVGLRPVAVVLLH
Sbjct: 353 NLELLPADAVGLRPVAVVLLH 291
>gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL62h11 5' similar to mago
nashi-like protein, mRNA sequence
Length = 554
Score = 344 bits (745), Expect = 5e-094
Identities = 141/146 (96%), Positives = 145/146 (99%)
Frame = +1 / +1
Query: 91 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 270
FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 94 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 273
Query: 271 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 450
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 274 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 453
Query: 451 LVQDLKCFVFSLINLHFKIKPIQS*A 528
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 454 LVQDLKCFVFSLINLHFKIKPIQL*A 531
Score = 269 bits (582), Expect = 2e-071
Identities = 120/142 (84%), Positives = 124/142 (87%)
Frame = -3 / -1
Query: 515 IGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMTISSS 336
IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMTISSS
Sbjct: 518 IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMTISSS 339
Query: 335 CRPMRSGSGQLLSSSFMISDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXLPSGR 156
C P RSGSGQLLSSSF+IS+SWMILLASR TEGETKTSLRIMVSF LPSGR
Sbjct: 338 CLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSLPSGR 159
Query: 155 NSNSRNSCPNLPLCPT*YRR*N 90
NSNSRNS PNLPLCPT*YRR*N
Sbjct: 158 NSNSRNSWPNLPLCPT*YRR*N 93
Score = 163 bits (351), Expect = 1e-039
Identities = 69/111 (62%), Positives = 76/111 (68%)
Frame = +3 / +3
Query: 201 ERHHDPQXXXXXXXXXXXXQEDHPGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHH 380
ERHHDPQ +EDHPG+ +EGGRQQLA ARP R GARD HGQR H +HH
Sbjct: 204 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 383
Query: 381 FQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQANPVLSSI 533
QDRLPR P QQGPGG P LLLPRPG + RVFT+QPPL DQA SS+
Sbjct: 384 LQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTYQPPL*DQAYSTXSSV 536
Score = 140 bits (301), Expect = 9e-033
Identities = 62/81 (76%), Positives = 72/81 (88%)
Frame = -2 / -3
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 531 SSXLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 352
Query: 348 DLELLSADAVGLRPVAVVLLH 286
+LELL ADAVGLRPVAVVLLH
Sbjct: 351 NLELLPADAVGLRPVAVVLLH 289
>gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J16 5', mRNA sequence
Length = 544
Score = 317 bits (686), Expect = 7e-086
Identities = 131/136 (96%), Positives = 135/136 (99%)
Frame = +1 / +2
Query: 121 GKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQESDIMKEDD 300
GKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQ+S+IMKEDD
Sbjct: 2 GKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQDSEIMKEDD 181
Query: 301 SNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVF 480
SNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVF
Sbjct: 182 SNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVF 361
Query: 481 SLINLHFKIKPIQS*A 528
SLINLHFKIKPIQ *A
Sbjct: 362 SLINLHFKIKPIQL*A 409
Score = 248 bits (537), Expect = 3e-065
Identities = 112/136 (82%), Positives = 116/136 (85%)
Frame = -3 / -2
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 408 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 229
Query: 347 ISSSCRPMRSGSGQLLSSSFMISDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 168
ISSSC P RSGSGQLLSSSF+IS+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 228 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 49
Query: 167 PSGRNSNSRNSCPNLP 120
PSGRNSNSRNS PNLP
Sbjct: 48 PSGRNSNSRNSWPNLP 1
Score = 166 bits (356), Expect = 2e-040
Identities = 70/111 (63%), Positives = 77/111 (69%)
Frame = +3 / +1
Query: 201 ERHHDPQXXXXXXXXXXXXQEDHPGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHH 380
ERHHDPQ +EDHPG+ +EGGRQQLA ARP R GARD HGQR H +HH
Sbjct: 82 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 261
Query: 381 FQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQANPVLSSI 533
QDRLPR P QQGPGG P LLLPRPG + RVFT+QPPL DQA LSS+
Sbjct: 262 LQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTYQPPL*DQAYSTLSSV 414
Score = 142 bits (304), Expect = 4e-033
Identities = 62/81 (76%), Positives = 73/81 (90%)
Frame = -2 / -1
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 409 SSKLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 230
Query: 348 DLELLSADAVGLRPVAVVLLH 286
+LELL ADAVGLRPVAVVLLH
Sbjct: 229 NLELLPADAVGLRPVAVVLLH 167
>gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006F16f, mRNA sequence
Length = 473
Score = 316 bits (684), Expect = 1e-085
Identities = 128/132 (96%), Positives = 132/132 (100%)
Frame = +1 / +1
Query: 91 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 270
FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 76 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 255
Query: 271 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 450
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 256 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 435
Query: 451 LVQDLKCFVFSL 486
LVQDLKCFVFSL
Sbjct: 436 LVQDLKCFVFSL 471
Score = 248 bits (535), Expect = 5e-065
Identities = 111/133 (83%), Positives = 115/133 (86%)
Frame = -3 / -1
Query: 488 MSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMTISSSCRPMRSGSG 309
+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMTISSSC P RSGSG
Sbjct: 473 ISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMTISSSCLPTRSGSG 294
Query: 308 QLLSSSFMISDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXLPSGRNSNSRNSCP 129
QLLSSSF+IS+SWMILLASR TEGETKTSLRIMVSF LPSGRNSNSRNS P
Sbjct: 293 QLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSLPSGRNSNSRNSWP 114
Query: 128 NLPLCPT*YRR*N 90
NLPLCPT*YRR*N
Sbjct: 113 NLPLCPT*YRR*N 75
Score = 144 bits (310), Expect = 5e-034
Identities = 60/96 (62%), Positives = 66/96 (68%)
Frame = +3 / +3
Query: 201 ERHHDPQXXXXXXXXXXXXQEDHPGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHH 380
ERHHDPQ +EDHPG+ +EGGRQQLA ARP R GARD HGQR H +HH
Sbjct: 186 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 365
Query: 381 FQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTH 488
QDRLPR P QQGPGG P LLLPRPG + RVFT+
Sbjct: 366 LQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTY 473
Score = 121 bits (258), Expect = 8e-027
Identities = 52/67 (77%), Positives = 60/67 (89%)
Frame = -2 / -3
Query: 486 E*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHDDLELLSADAVGLRP 307
+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD+LELL ADAVGLRP
Sbjct: 471 K*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHDNLELLPADAVGLRP 292
Query: 306 VAVVLLH 286
VAVVLLH
Sbjct: 291 VAVVLLH 271
>gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A192 5-PRIME, mRNA sequence
Length = 588
Score = 312 bits (675), Expect = 2e-084
Identities = 129/134 (96%), Positives = 133/134 (99%)
Frame = +1 / +2
Query: 127 FGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQESDIMKEDDSN 306
FGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQ+S+IMKEDDSN
Sbjct: 2 FGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQDSEIMKEDDSN 181
Query: 307 WPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSL 486
WPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSL
Sbjct: 182 WPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSL 361
Query: 487 INLHFKIKPIQS*A 528
INLHFKIKPIQ *A
Sbjct: 362 INLHFKIKPIQL*A 403
Score = 243 bits (526), Expect = 8e-064
Identities = 110/134 (82%), Positives = 114/134 (85%)
Frame = -3 / -1
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 402 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 223
Query: 347 ISSSCRPMRSGSGQLLSSSFMISDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 168
ISSSC P RSGSGQLLSSSF+IS+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 222 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 43
Query: 167 PSGRNSNSRNSCPN 126
PSGRNSNSRNS PN
Sbjct: 42 PSGRNSNSRNSWPN 1
Score = 166 bits (356), Expect = 2e-040
Identities = 70/111 (63%), Positives = 77/111 (69%)
Frame = +3 / +1
Query: 201 ERHHDPQXXXXXXXXXXXXQEDHPGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHH 380
ERHHDPQ +EDHPG+ +EGGRQQLA ARP R GARD HGQR H +HH
Sbjct: 76 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 255
Query: 381 FQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQANPVLSSI 533
QDRLPR P QQGPGG P LLLPRPG + RVFT+QPPL DQA LSS+
Sbjct: 256 LQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTYQPPL*DQAYSTLSSV 408
Score = 142 bits (304), Expect = 4e-033
Identities = 62/81 (76%), Positives = 73/81 (90%)
Frame = -2 / -3
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 403 SSKLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 224
Query: 348 DLELLSADAVGLRPVAVVLLH 286
+LELL ADAVGLRPVAVVLLH
Sbjct: 223 NLELLPADAVGLRPVAVVLLH 161
>gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085J23f, mRNA sequence
Length = 896
Score = 235 bits (508), Expect(2) = 1e-068
Identities = 97/114 (85%), Positives = 104/114 (91%)
Frame = +1 / +1
Query: 91 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 270
FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFV PSVLREAR+II
Sbjct: 22 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVFPSVLREARKII 201
Query: 271 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEG 432
Q+ IMKEDDSNWPEP R+GRQE EIVMG+EHISFTTSK SL DVQ+S++ G
Sbjct: 202 QDFGIMKEDDSNWPEPHRVGRQEPEIVMGHEHISFTTSKNRSLGDVQTSQETGG 363
Score = 180 bits (387), Expect(2) = 2e-050
Identities = 84/114 (73%), Positives = 86/114 (75%)
Frame = -3 / -1
Query: 431 PSGSLLDWTSTREPILEVVNEMCSLPMTISSSCRPMRSGSGQLLSSSFMISDSWMILLAS 252
P S L WTS RE LEVV EMCS PMTIS SC P R GSGQLLSSSF+I SWMI LAS
Sbjct: 362 PPVSWLVWTSPRERFLEVVKEMCSWPMTISGSCLPTRWGSGQLLSSSFIIPKSWMIFLAS 183
Query: 251 RRTEGETKTSLRIMVSFXXXXXXXXXXLPSGRNSNSRNSCPNLPLCPT*YRR*N 90
R TEG+TKTSLRIMVSF LPSGRNSNSRNS PNLPLCPT*YRR*N
Sbjct: 182 RSTEGKTKTSLRIMVSFL*LELLA*RSLPSGRNSNSRNSWPNLPLCPT*YRR*N 21
Score = 45.1 bits (92), Expect(2) = 1e-068
Identities = 20/32 (62%), Positives = 21/32 (65%)
Frame = +3 / +1
Query: 417 QGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQA 512
Q GG P LLLP PG R FT+QPPL DQA
Sbjct: 349 QETGGPPHLLLPSPGP*KFRGFTYQPPL*DQA 444
Score = 40.0 bits (81), Expect(2) = 2e-050
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -2 / -2
Query: 510 LDLEVEVDE*KHEALQILDEVVEDPESLR 424
LDL+ EVD+* HE ++L VVED E+LR
Sbjct: 442 LDLKGEVDK*NHETFRVLARVVEDAEALR 356
>gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09u 3',
mRNA sequence
Length = 478
Score = 197 bits (425), Expect = 7e-050
Identities = 81/86 (94%), Positives = 85/86 (98%)
Frame = +1 / -1
Query: 271 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 450
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 469 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 290
Query: 451 LVQDLKCFVFSLINLHFKIKPIQS*A 528
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 289 LVQDLKCFVFSLINLHFKIKPIQL*A 212
Score = 173 bits (372), Expect = 1e-042
Identities = 74/86 (86%), Positives = 78/86 (90%)
Frame = -3 / +3
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 213 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 392
Query: 347 ISSSCRPMRSGSGQLLSSSFMISDSW 270
ISSSC P RSGSGQLLSSSF+IS+SW
Sbjct: 393 ISSSCLPTRSGSGQLLSSSFIISESW 470
Score = 142 bits (304), Expect = 4e-033
Identities = 62/81 (76%), Positives = 73/81 (90%)
Frame = -2 / +2
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 212 SSKLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 391
Query: 348 DLELLSADAVGLRPVAVVLLH 286
+LELL ADAVGLRPVAVVLLH
Sbjct: 392 NLELLPADAVGLRPVAVVLLH 454
Score = 142 bits (304), Expect = 4e-033
Identities = 60/88 (68%), Positives = 66/88 (75%)
Frame = +3 / -3
Query: 270 PGVRYHEGGRQQLA*ARPHRPTGARDRHGQRTHFIHHFQDRLPRRCPVQQGPGGTPDLLL 449
PG+ +EGGRQQLA ARP R GARD HGQR H +HH QDRLPR P QQGPGG P LLL
Sbjct: 470 PGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHHLQDRLPR*RPDQQGPGGPPHLLL 291
Query: 450 PRPGSEVLRVFTHQPPLQDQANPVLSSI 533
PRPG + RVFT+QPPL DQA LSS+
Sbjct: 290 PRPGP*MFRVFTYQPPL*DQAYSTLSSV 207
>gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
5-PRIME, mRNA sequence
Length = 398
Score = 146 bits (314), Expect = 1e-034
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +1 / +3
Query: 331 RQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 510
R ELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK
Sbjct: 6 RGELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 185
Query: 511 PIQS*A 528
PIQ *A
Sbjct: 186 PIQL*A 203
Score = 130 bits (279), Expect = 1e-029
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = -3 / -2
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 202 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 23
Query: 347 ISSSCR 330
ISSS R
Sbjct: 22 ISSSPR 5
Score = 111 bits (238), Expect = 4e-024
Identities = 46/66 (69%), Positives = 50/66 (75%)
Frame = +3 / +2
Query: 336 GARDRHGQRTHFIHHFQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQAN 515
GARD HGQR H +HH QDRLPR P QQGPGG P LLLPRPG + RVFT+QPPL DQA
Sbjct: 11 GARDCHGQRAHLLHHLQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTYQPPL*DQAY 190
Query: 516 PVLSSI 533
LSS+
Sbjct: 191 STLSSV 208
Score = 108 bits (230), Expect = 6e-023
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = -2 / -1
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 203 SSKLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 24
Query: 348 DLELLS 331
+LEL S
Sbjct: 23 NLELPS 6
>gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
3-PRIME, mRNA sequence
Length = 398
Score = 146 bits (314), Expect = 1e-034
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +1 / -3
Query: 331 RQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 510
R ELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK
Sbjct: 393 RGELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 214
Query: 511 PIQS*A 528
PIQ *A
Sbjct: 213 PIQL*A 196
Score = 130 bits (279), Expect = 1e-029
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = -3 / +2
Query: 527 AQDWIGLILKWRLMSENTKHFRSWTR**KIRSPSGSLLDWTSTREPILEVVNEMCSLPMT 348
AQ IGLILKWRL+SENTKH RSWTR**K+R PSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 197 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 376
Query: 347 ISSSCR 330
ISSS R
Sbjct: 377 ISSSPR 394
Score = 111 bits (238), Expect = 4e-024
Identities = 46/66 (69%), Positives = 50/66 (75%)
Frame = +3 / -2
Query: 336 GARDRHGQRTHFIHHFQDRLPRRCPVQQGPGGTPDLLLPRPGSEVLRVFTHQPPLQDQAN 515
GARD HGQR H +HH QDRLPR P QQGPGG P LLLPRPG + RVFT+QPPL DQA
Sbjct: 388 GARDCHGQRAHLLHHLQDRLPR*RPDQQGPGGPPHLLLPRPGP*MFRVFTYQPPL*DQAY 209
Query: 516 PVLSSI 533
LSS+
Sbjct: 208 STLSSV 191
Score = 108 bits (230), Expect = 6e-023
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = -2 / +1
Query: 528 SSRLDWLDLEVEVDE*KHEALQILDEVVEDPESLRVLAGLDIDEGADLGSGE*NVFVAHD 349
SS+L+ LDL+VEVD+*KHE ++LDEVVED E+LRVLAGLD++EGADLG GE +V VAHD
Sbjct: 196 SSKLNRLDLKVEVDK*KHETFKVLDEVVEDAEALRVLAGLDVNEGADLGGGEGDVLVAHD 375
Query: 348 DLELLS 331
+LEL S
Sbjct: 376 NLELPS 393
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 389,555,738
Number of Sequences: 312970
Number of extensions: 6287466
Number of successful extensions: 52034
Number of sequences better than 1.0e-020: 13
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 11283802052
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)