TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke devel... 341 2e-093
gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no... 341 2e-093
gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm libra... 341 2e-093
gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, wat... 314 3e-085
gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedl... 313 6e-085
gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgar... 309 1e-083
gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 ... 232 1e-060
gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke devel... 197 5e-050
gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. v... 146 1e-034
gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. v... 146 1e-034
>gb|AL506291.1|AL506291 AL506291 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09T 5',
mRNA sequence
Length = 700
Score = 341 bits (739), Expect = 2e-093
Identities = 140/146 (95%), Positives = 144/146 (98%)
Frame = +1 / +1
Query: 73 FYLRYYVGHKGKFGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 252
FYLRYYVGHKGKFGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 118 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 297
Query: 253 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 432
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 298 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 477
Query: 433 LVQDLKCFVFSLINLHFKIKPIQS*A 510
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 478 LVQDLKCFVFSLINLHFKIKPIQL*A 555
Score = 253 bits (548), Expect = 5e-067
Identities = 118/146 (80%), Positives = 124/146 (84%)
Frame = -3 / -3
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 554 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 375
Query: 329 ISSSWRPMRSGSGQLLSSSFMMSDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 150
ISSS P RSGSGQLLSSSF++S+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 374 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 195
Query: 149 PSGRSSNSRNSCPNLPLCPT**RR*N 72
PSGR+SNSRNS PNLPLCPT* RR*N
Sbjct: 194 PSGRNSNSRNSWPNLPLCPT*YRR*N 117
Score = 98.7 bits (209), Expect(3) = 2e-024
Identities = 39/65 (60%), Positives = 43/65 (66%)
Frame = +3 / +3
Query: 183 ERHHDPQGGLRLALRPPRGQEDHPGVRHHEGGRQQLXXXXXXXXXXXXXXXXQRAHFIHH 362
ERHHDPQGGLRL LR PRG+EDHPG+ +EGGRQQL QRAH +HH
Sbjct: 228 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 407
Query: 363 FQDRL 377
QDRL
Sbjct: 408 LQDRL 422
Score = 28.6 bits (56), Expect(3) = 2e-024
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3 / +3
Query: 450 VFRVLAHQPSLQDQANPVLSSI 515
+FRV +QP L DQA LSS+
Sbjct: 495 MFRVFTYQPPL*DQAYSTLSSV 560
Score = 22.1 bits (42), Expect(3) = 2e-024
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 72 VLPALLRGTQG 104
VLP +LRG QG
Sbjct: 117 VLPTVLRGAQG 149
>gb|BM372591.2|BM372591 EBpi05_SQ003_G09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G09 5', mRNA sequence
Length = 540
Score = 341 bits (739), Expect = 2e-093
Identities = 140/146 (95%), Positives = 144/146 (98%)
Frame = +1 / +3
Query: 73 FYLRYYVGHKGKFGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 252
FYLRYYVGHKGKFGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 96 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 275
Query: 253 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 432
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 276 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 455
Query: 433 LVQDLKCFVFSLINLHFKIKPIQS*A 510
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 456 LVQDLKCFVFSLINLHFKIKPIQL*A 533
Score = 248 bits (535), Expect = 3e-065
Identities = 117/146 (80%), Positives = 123/146 (84%)
Frame = -3 / -3
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RS TR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 532 AQS*IGLILKWRLISENTKHLRSCTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 353
Query: 329 ISSSWRPMRSGSGQLLSSSFMMSDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 150
ISSS P RSGSGQLLSSSF++S+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 352 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 173
Query: 149 PSGRSSNSRNSCPNLPLCPT**RR*N 72
PSGR+SNSRNS PNLPLCPT* RR*N
Sbjct: 172 PSGRNSNSRNSWPNLPLCPT*YRR*N 95
Score = 98.7 bits (209), Expect(3) = 2e-024
Identities = 39/65 (60%), Positives = 43/65 (66%)
Frame = +3 / +2
Query: 183 ERHHDPQGGLRLALRPPRGQEDHPGVRHHEGGRQQLXXXXXXXXXXXXXXXXQRAHFIHH 362
ERHHDPQGGLRL LR PRG+EDHPG+ +EGGRQQL QRAH +HH
Sbjct: 206 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 385
Query: 363 FQDRL 377
QDRL
Sbjct: 386 LQDRL 400
Score = 28.6 bits (56), Expect(3) = 2e-024
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3 / +2
Query: 450 VFRVLAHQPSLQDQANPVLSSI 515
+FRV +QP L DQA LSS+
Sbjct: 473 MFRVFTYQPPL*DQAYSTLSSV 538
Score = 22.1 bits (42), Expect(3) = 2e-024
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 72 VLPALLRGTQG 104
VLP +LRG QG
Sbjct: 95 VLPTVLRGAQG 127
>gb|CV060925.1|CV060925 BNEL62h11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL62h11 5' similar to mago
nashi-like protein, mRNA sequence
Length = 554
Score = 341 bits (739), Expect = 2e-093
Identities = 140/146 (95%), Positives = 144/146 (98%)
Frame = +1 / +1
Query: 73 FYLRYYVGHKGKFGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 252
FYLRYYVGHKGKFGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 94 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 273
Query: 253 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 432
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 274 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 453
Query: 433 LVQDLKCFVFSLINLHFKIKPIQS*A 510
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 454 LVQDLKCFVFSLINLHFKIKPIQL*A 531
Score = 251 bits (543), Expect = 3e-066
Identities = 116/142 (81%), Positives = 122/142 (85%)
Frame = -3 / -1
Query: 497 IGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMTISSS 318
IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMTISSS
Sbjct: 518 IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMTISSS 339
Query: 317 WRPMRSGSGQLLSSSFMMSDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXLPSGR 138
P RSGSGQLLSSSF++S+SWMILLASR TEGETKTSLRIMVSF LPSGR
Sbjct: 338 CLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSLPSGR 159
Query: 137 SSNSRNSCPNLPLCPT**RR*N 72
+SNSRNS PNLPLCPT* RR*N
Sbjct: 158 NSNSRNSWPNLPLCPT*YRR*N 93
Score = 98.7 bits (209), Expect(3) = 1e-023
Identities = 39/65 (60%), Positives = 43/65 (66%)
Frame = +3 / +3
Query: 183 ERHHDPQGGLRLALRPPRGQEDHPGVRHHEGGRQQLXXXXXXXXXXXXXXXXQRAHFIHH 362
ERHHDPQGGLRL LR PRG+EDHPG+ +EGGRQQL QRAH +HH
Sbjct: 204 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 383
Query: 363 FQDRL 377
QDRL
Sbjct: 384 LQDRL 398
Score = 26.3 bits (51), Expect(3) = 1e-023
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 450 VFRVLAHQPSLQDQANPVLSSI 515
+FRV +QP L DQA SS+
Sbjct: 471 MFRVFTYQPPL*DQAYSTXSSV 536
Score = 22.1 bits (42), Expect(3) = 1e-023
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 72 VLPALLRGTQG 104
VLP +LRG QG
Sbjct: 93 VLPTVLRGAQG 125
>gb|BQ765244.1|BQ765244 EBro03_SQ006_J16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_J16 5', mRNA sequence
Length = 544
Score = 314 bits (680), Expect = 3e-085
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1 / +2
Query: 103 GKFGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQESDIMKEDD 282
GKFGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQ+S+IMKEDD
Sbjct: 2 GKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQDSEIMKEDD 181
Query: 283 SNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVF 462
SNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVF
Sbjct: 182 SNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVF 361
Query: 463 SLINLHFKIKPIQS*A 510
SLINLHFKIKPIQ *A
Sbjct: 362 SLINLHFKIKPIQL*A 409
Score = 236 bits (509), Expect = 1e-061
Identities = 109/136 (80%), Positives = 115/136 (84%)
Frame = -3 / -2
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 408 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 229
Query: 329 ISSSWRPMRSGSGQLLSSSFMMSDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 150
ISSS P RSGSGQLLSSSF++S+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 228 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 49
Query: 149 PSGRSSNSRNSCPNLP 102
PSGR+SNSRNS PNLP
Sbjct: 48 PSGRNSNSRNSWPNLP 1
Score = 98.7 bits (209), Expect(2) = 5e-023
Identities = 39/65 (60%), Positives = 43/65 (66%)
Frame = +3 / +1
Query: 183 ERHHDPQGGLRLALRPPRGQEDHPGVRHHEGGRQQLXXXXXXXXXXXXXXXXQRAHFIHH 362
ERHHDPQGGLRL LR PRG+EDHPG+ +EGGRQQL QRAH +HH
Sbjct: 82 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 261
Query: 363 FQDRL 377
QDRL
Sbjct: 262 LQDRL 276
Score = 28.6 bits (56), Expect(2) = 5e-023
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 450 VFRVLAHQPSLQDQANPVLSSI 515
+FRV +QP L DQA LSS+
Sbjct: 349 MFRVFTYQPPL*DQAYSTLSSV 414
>gb|BE215274.2|BE215274 HV_CEb0006F16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006F16f, mRNA sequence
Length = 473
Score = 313 bits (678), Expect = 6e-085
Identities = 127/132 (96%), Positives = 131/132 (99%)
Frame = +1 / +1
Query: 73 FYLRYYVGHKGKFGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 252
FYLRYYVGHKGKFGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII
Sbjct: 76 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 255
Query: 253 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 432
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 256 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 435
Query: 433 LVQDLKCFVFSL 468
LVQDLKCFVFSL
Sbjct: 436 LVQDLKCFVFSL 471
Score = 237 bits (511), Expect = 7e-062
Identities = 108/133 (81%), Positives = 114/133 (85%)
Frame = -3 / -1
Query: 470 MSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMTISSSWRPMRSGSG 291
+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMTISSS P RSGSG
Sbjct: 473 ISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMTISSSCLPTRSGSG 294
Query: 290 QLLSSSFMMSDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXLPSGRSSNSRNSCP 111
QLLSSSF++S+SWMILLASR TEGETKTSLRIMVSF LPSGR+SNSRNS P
Sbjct: 293 QLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSLPSGRNSNSRNSWP 114
Query: 110 NLPLCPT**RR*N 72
NLPLCPT* RR*N
Sbjct: 113 NLPLCPT*YRR*N 75
Score = 98.7 bits (209), Expect(2) = 4e-021
Identities = 39/65 (60%), Positives = 43/65 (66%)
Frame = +3 / +3
Query: 183 ERHHDPQGGLRLALRPPRGQEDHPGVRHHEGGRQQLXXXXXXXXXXXXXXXXQRAHFIHH 362
ERHHDPQGGLRL LR PRG+EDHPG+ +EGGRQQL QRAH +HH
Sbjct: 186 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 365
Query: 363 FQDRL 377
QDRL
Sbjct: 366 LQDRL 380
Score = 22.1 bits (42), Expect(2) = 4e-021
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 72 VLPALLRGTQG 104
VLP +LRG QG
Sbjct: 75 VLPTVLRGAQG 107
>gb|CK123080.1|CK123080 BES1824102a19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A192 5-PRIME, mRNA sequence
Length = 588
Score = 309 bits (669), Expect = 1e-083
Identities = 128/134 (95%), Positives = 132/134 (98%)
Frame = +1 / +2
Query: 109 FGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQESDIMKEDDSN 288
FGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQ+S+IMKEDDSN
Sbjct: 2 FGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQDSEIMKEDDSN 181
Query: 289 WPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSL 468
WPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSL
Sbjct: 182 WPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSL 361
Query: 469 INLHFKIKPIQS*A 510
INLHFKIKPIQ *A
Sbjct: 362 INLHFKIKPIQL*A 403
Score = 231 bits (498), Expect = 4e-060
Identities = 107/134 (79%), Positives = 113/134 (84%)
Frame = -3 / -1
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 402 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 223
Query: 329 ISSSWRPMRSGSGQLLSSSFMMSDSWMILLASRRTEGETKTSLRIMVSFXXXXXXXXXXL 150
ISSS P RSGSGQLLSSSF++S+SWMILLASR TEGETKTSLRIMVSF L
Sbjct: 222 ISSSCLPTRSGSGQLLSSSFIISESWMILLASRSTEGETKTSLRIMVSFL*LELLA*RSL 43
Query: 149 PSGRSSNSRNSCPN 108
PSGR+SNSRNS PN
Sbjct: 42 PSGRNSNSRNSWPN 1
Score = 98.7 bits (209), Expect(2) = 5e-023
Identities = 39/65 (60%), Positives = 43/65 (66%)
Frame = +3 / +1
Query: 183 ERHHDPQGGLRLALRPPRGQEDHPGVRHHEGGRQQLXXXXXXXXXXXXXXXXQRAHFIHH 362
ERHHDPQGGLRL LR PRG+EDHPG+ +EGGRQQL QRAH +HH
Sbjct: 76 ERHHDPQGGLRLPLRAPRGEEDHPGLGDNEGGRQQLAGARPRRQAGARDCHGQRAHLLHH 255
Query: 363 FQDRL 377
QDRL
Sbjct: 256 LQDRL 270
Score = 28.6 bits (56), Expect(2) = 5e-023
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 450 VFRVLAHQPSLQDQANPVLSSI 515
+FRV +QP L DQA LSS+
Sbjct: 343 MFRVFTYQPPL*DQAYSTLSSV 408
>gb|BE194452.3|BE194452 HVSMEh0085J23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085J23f, mRNA sequence
Length = 896
Score = 232 bits (502), Expect = 1e-060
Identities = 96/114 (84%), Positives = 103/114 (90%)
Frame = +1 / +1
Query: 73 FYLRYYVGHKGKFGHEFLEFELRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRII 252
FYLRYYVGHKGKFGHEFLEFE RPDGKLRYANNSNYKNDTMIRKEVFV PSVLREAR+II
Sbjct: 22 FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVFPSVLREARKII 201
Query: 253 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEG 414
Q+ IMKEDDSNWPEP R+GRQE EIVMG+EHISFTTSK SL DVQ+S++ G
Sbjct: 202 QDFGIMKEDDSNWPEPHRVGRQEPEIVMGHEHISFTTSKNRSLGDVQTSQETGG 363
Score = 166 bits (357), Expect(2) = 1e-046
Identities = 80/114 (70%), Positives = 84/114 (73%)
Frame = -3 / -1
Query: 413 PSGSLLDWTSTREPILEVVNEMCSLPMTISSSWRPMRSGSGQLLSSSFMMSDSWMILLAS 234
P S L WTS RE LEVV EMCS PMTIS S P R GSGQLLSSSF++ SWMI LAS
Sbjct: 362 PPVSWLVWTSPRERFLEVVKEMCSWPMTISGSCLPTRWGSGQLLSSSFIIPKSWMIFLAS 183
Query: 233 RRTEGETKTSLRIMVSFXXXXXXXXXXLPSGRSSNSRNSCPNLPLCPT**RR*N 72
R TEG+TKTSLRIMVSF LPSGR+SNSRNS PNLPLCPT* RR*N
Sbjct: 182 RSTEGKTKTSLRIMVSFL*LELLA*RSLPSGRNSNSRNSWPNLPLCPT*YRR*N 21
Score = 40.5 bits (82), Expect(2) = 1e-046
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = -2 / -2
Query: 492 LDLEVKVDEREHETLQILDKVVEDPEALR 406
LDL+ +VD+ HET ++L +VVED EALR
Sbjct: 442 LDLKGEVDK*NHETFRVLARVVEDAEALR 356
>gb|AL509714.1|AL509714 AL509714 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02K09u 3',
mRNA sequence
Length = 478
Score = 197 bits (425), Expect = 5e-050
Identities = 81/86 (94%), Positives = 85/86 (98%)
Frame = +1 / -1
Query: 253 QESDIMKEDDSNWPEPDRIGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYY 432
Q+S+IMKEDDSNWPEPDR+GRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYY
Sbjct: 469 QDSEIMKEDDSNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYY 290
Query: 433 LVQDLKCFVFSLINLHFKIKPIQS*A 510
LVQDLKCFVFSLINLHFKIKPIQ *A
Sbjct: 289 LVQDLKCFVFSLINLHFKIKPIQL*A 212
Score = 162 bits (349), Expect = 2e-039
Identities = 72/86 (83%), Positives = 77/86 (89%)
Frame = -3 / +3
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 213 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 392
Query: 329 ISSSWRPMRSGSGQLLSSSFMMSDSW 252
ISSS P RSGSGQLLSSSF++S+SW
Sbjct: 393 ISSSCLPTRSGSGQLLSSSFIISESW 470
>gb|BQ460838.1|BQ460838 HA05L21r HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
5-PRIME, mRNA sequence
Length = 398
Score = 146 bits (314), Expect = 1e-034
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +1 / +3
Query: 313 RQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 492
R ELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK
Sbjct: 6 RGELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 185
Query: 493 PIQS*A 510
PIQ *A
Sbjct: 186 PIQL*A 203
Score = 126 bits (269), Expect = 2e-028
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = -3 / -2
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 202 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 23
Query: 329 ISSSWR 312
ISSS R
Sbjct: 22 ISSSPR 5
>gb|BQ658095.1|BQ658095 HA05L21u HA Hordeum vulgare subsp. vulgare cDNA clone HA05L21
3-PRIME, mRNA sequence
Length = 398
Score = 146 bits (314), Expect = 1e-034
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +1 / -3
Query: 313 RQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 492
R ELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK
Sbjct: 393 RGELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIK 214
Query: 493 PIQS*A 510
PIQ *A
Sbjct: 213 PIQL*A 196
Score = 126 bits (269), Expect = 2e-028
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = -3 / +2
Query: 509 AQDWIGLILK*RLMSENTKHFRSWTR**KIRRPSGSLLDWTSTREPILEVVNEMCSLPMT 330
AQ IGLILK RL+SENTKH RSWTR**K+RRPSGSLL WTSTREPILEVV EMCSLPMT
Sbjct: 197 AQS*IGLILKWRLISENTKHLRSWTR**KMRRPSGSLLVWTSTREPILEVVKEMCSLPMT 376
Query: 329 ISSSWR 312
ISSS R
Sbjct: 377 ISSSPR 394
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 233,604,080
Number of Sequences: 312970
Number of extensions: 3079230
Number of successful extensions: 34797
Number of sequences better than 1.0e-020: 13
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7847091165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)