TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 101 3e-053
gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA,... 127 2e-049
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 74 1e-048
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 96 4e-048
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 100 1e-047
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 99 7e-047
gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA,... 132 2e-045
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 96 5e-045
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 99 3e-043
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 99 5e-043
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 96 2e-042
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 100 3e-042
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 100 3e-042
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 100 3e-042
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 96 7e-042
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 100 9e-042
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 94 9e-042
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 94 9e-042
gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. v... 135 1e-041
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 100 4e-041
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 100 3e-040
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 100 4e-040
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 100 4e-040
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 100 4e-040
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 100 4e-040
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 94 5e-040
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 100 1e-038
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 100 1e-038
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 100 1e-038
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 100 1e-038
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 100 1e-038
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 100 1e-038
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 100 1e-038
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 100 2e-038
gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DA... 106 4e-038
gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. v... 106 4e-038
gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. v... 106 4e-038
gb|BF254222.2|BF254222 HVSMEf0003F20f Hordeum vulgare seedl... 91 4e-038
gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. v... 105 7e-038
gb|BJ462547.1|BJ462547 BJ462547 K. Sato unpublished cDNA li... 104 7e-038
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 94 7e-038
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 94 7e-038
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 94 7e-038
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 100 1e-037
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 100 1e-037
gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike... 106 3e-037
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 94 6e-037
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 94 9e-037
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 90 1e-036
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 100 1e-036
gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedl... 90 2e-036
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 100 2e-036
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 100 2e-036
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 99 4e-036
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 96 8e-036
gb|BG417583.2|BG417583 HVSMEk0018E23f Hordeum vulgare testa... 102 9e-036
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 97 1e-035
gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. v... 149 2e-035
gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. v... 149 2e-035
gb|BQ766937.1|BQ766937 EBro08_SQ007_D17_R root, 3 week, dro... 102 2e-035
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 94 2e-035
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 94 4e-035
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 101 5e-035
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 90 9e-035
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 101 9e-035
gb|BI958216.1|BI958216 HVSMEn0013O15f Hordeum vulgare rachi... 101 1e-034
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 96 1e-034
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 100 2e-034
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 67 3e-034
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 99 3e-034
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 100 5e-034
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 98 9e-034
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 133 1e-033
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 97 2e-032
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 100 2e-032
gb|BG301241.1|BG301241 HVSMEb0020C10f Hordeum vulgare seedl... 82 9e-032
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 103 3e-031
gb|BE437689.1|BE437689 SFR006.D12F990705 ITEC SFR Barley Le... 123 9e-031
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 95 1e-030
gb|BU998469.1|BU998469 HI11C15r HI Hordeum vulgare subsp. v... 133 1e-030
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 101 2e-030
gb|AL511635.1|AL511635 AL511635 Hordeum vulgare Barke devel... 100 4e-030
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 95 2e-029
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 77 3e-029
gb|BU968389.1|BU968389 HB07F20r BC Hordeum vulgare subsp. v... 127 1e-028
gb|BU968461.1|BU968461 HB07J14r BC Hordeum vulgare subsp. v... 127 1e-028
gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 ... 94 1e-028
gb|BQ472509.1|BQ472509 HB09F20T BC Hordeum vulgare subsp. v... 127 1e-028
gb|BQ472448.1|BQ472448 HB09J14T BC Hordeum vulgare subsp. v... 124 7e-028
gb|BI954140.1|BI954140 HVSMEm0016F19f Hordeum vulgare green... 71 3e-027
gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA li... 96 3e-027
gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA li... 96 6e-027
gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike... 94 2e-026
gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA li... 96 2e-026
gb|CV053661.1|CV053661 BNEL101g2 Barley EST endosperm libra... 93 4e-026
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 100 4e-026
gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. v... 95 5e-026
gb|BQ471321.1|BQ471321 HV02B13r HV Hordeum vulgare subsp. v... 117 1e-025
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 101 1e-025
gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA li... 101 1e-025
gb|BQ755335.1|BQ755335 EBed07_SQ002_G10_R endosperm, 28 DPA... 72 1e-025
gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA li... 96 2e-025
gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. v... 94 3e-025
gb|BJ452216.1|BJ452216 BJ452216 K. Sato unpublished cDNA li... 102 4e-025
gb|BJ465335.1|BJ465335 BJ465335 K. Sato unpublished cDNA li... 101 6e-025
gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke devel... 94 6e-025
gb|CB881964.1|CB881964 HM11G24w HM Hordeum vulgare subsp. v... 95 8e-025
gb|BJ464911.1|BJ464911 BJ464911 K. Sato unpublished cDNA li... 100 9e-025
gb|BJ544802.1|BJ544802 BJ544802 K. Sato unpublished cDNA li... 100 1e-024
gb|CD662781.1|CD662781 UCRHV18_03ad10_b1 Drought-stressed D... 73 1e-024
gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA li... 93 2e-024
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 92 2e-024
gb|AV914656.1|AV914656 AV914656 K. Sato unpublished cDNA li... 101 9e-024
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 97 2e-023
gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA li... 97 3e-023
gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm libra... 96 5e-023
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 71 7e-023
gb|BU970797.1|BU970797 HB15L12r BC Hordeum vulgare subsp. v... 106 2e-022
gb|BG301295.1|BG301295 HVSMEb0020I16f Hordeum vulgare seedl... 87 2e-022
gb|BF629833.2|BF629833 HVSMEb0007A10f Hordeum vulgare seedl... 96 8e-022
gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. v... 94 8e-022
gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. v... 94 8e-022
gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa... 94 8e-022
gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. v... 92 8e-022
gb|BJ468562.1|BJ468562 BJ468562 K. Sato unpublished cDNA li... 104 9e-022
gb|CA015302.1|CA015302 HT13O09r HT Hordeum vulgare subsp. v... 88 1e-021
gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, ... 96 2e-021
gb|BQ756549.1|BQ756549 EBem09_SQ003_A16_R embryo, 1 Day ger... 103 2e-021
gb|BI947961.1|BI947961 HVSMEl0007J23f Hordeum vulgare spike... 102 4e-021
gb|BI952746.1|BI952746 HVSMEm0007J23f Hordeum vulgare green... 102 4e-021
gb|AV932210.1|AV932210 AV932210 K. Sato unpublished cDNA li... 102 4e-021
gb|BJ547606.1|BJ547606 BJ547606 K. Sato unpublished cDNA li... 102 4e-021
gb|BJ547617.1|BJ547617 BJ547617 K. Sato unpublished cDNA li... 102 4e-021
gb|BJ547686.1|BJ547686 BJ547686 K. Sato unpublished cDNA li... 102 4e-021
gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA li... 101 6e-021
gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA li... 101 6e-021
gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA li... 101 6e-021
gb|AV915968.1|AV915968 AV915968 K. Sato unpublished cDNA li... 71 7e-021
gb|BU986367.1|BU986367 HF11J16r HF Hordeum vulgare subsp. v... 101 8e-021
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 101 bits (216), Expect(3) = 3e-053
Identities = 38/95 (40%), Positives = 61/95 (64%)
Frame = -2 / +2
Query: 1033 YRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMR 854
YR K++AAQ G+VG+V+D E + + EDQ AAQR DF +GW++DP+ G YP+ M+
Sbjct: 92 YRTKYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQ 271
Query: 853 QRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
+ LP F+ + + + D++G+N YT+ L+
Sbjct: 272 DLVKERLPKFTPAEAKMVMGSADYIGINQYTASLM 376
Score = 79.4 bits (167), Expect(3) = 3e-053
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = -2 / +2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGY 371
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY
Sbjct: 602 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGY 751
Score = 66.6 bits (139), Expect(3) = 3e-053
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 452 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 589
>gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_D03 5', mRNA sequence
Length = 695
Score = 127 bits (273), Expect(2) = 2e-049
Identities = 46/122 (37%), Positives = 75/122 (61%)
Frame = -2 / +3
Query: 715 YQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEE 536
Y + + G+ +G +A +E+LF+ P G+H+ + Y ++YNNPA+YV ENG+DE
Sbjct: 330 YDADNRSNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEG 509
Query: 535 DDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 356
++ S + + L D R+ Y +L + AIK +++GYF W+F+D FEW GY RFG
Sbjct: 510 NNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFG 689
Query: 355 IV 350
++
Sbjct: 690 LI 695
Score = 89.0 bits (188), Expect(2) = 2e-049
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = -2 / +3
Query: 964 PFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKID 785
P+S + D+ AA+RR++F LGW++DPI GDYP SMR L + LP F+ +R D
Sbjct: 75 PYSNSTADKAAAKRRVEFMLGWFMDPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYD 254
Query: 784 FVGVNHYTS 758
FVG+N+YT+
Sbjct: 255 FVGLNYYTT 281
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 74.4 bits (156), Expect(5) = 1e-048
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = -2 / +1
Query: 952 NVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGV 773
+ EDQ AAQR DF +GW++DP+ G YP+ M+ + LP F+ + + + D++G+
Sbjct: 4 STEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIGI 183
Query: 772 NHYTSRLI 749
N YT+ L+
Sbjct: 184 NQYTASLM 207
Score = 66.6 bits (139), Expect(5) = 1e-048
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 283 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 420
Score = 53.3 bits (110), Expect(5) = 1e-048
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = -2 / +2
Query: 415 FAWSFLDNFEWAMGYTKRFGIVYVDYKN 332
FA S LDNFEW GY+ +FGIVYVD+ N
Sbjct: 539 FAGSLLDNFEWMAGYSSKFGIVYVDFNN 622
Score = 45.1 bits (92), Expect(5) = 1e-048
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -2 / +1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYF 413
T DQ L DTTRV +++ YL + +AI GA+V G+F
Sbjct: 433 TRDQYLRDTTRVRFYRSYLIELKKAIDSGANVLGFF 540
Score = 28.6 bits (56), Expect(5) = 1e-048
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 322 RHPKASALWFSRLL 281
RHPKASA WF + L
Sbjct: 636 RHPKASAYWFKKPL 677
>gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30c23 5', mRNA sequence
Length = 688
Score = 95.9 bits (203), Expect(3) = 4e-048
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = -2 / +2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
+++ ++ND RV Y +GYL ++ A++ GA+VRGYF WS +DNFEW G+T RFG+ YVD
Sbjct: 398 SMEDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYYVD 577
Query: 340 YK 335
++
Sbjct: 578 FE 583
Score = 89.5 bits (189), Expect(3) = 4e-048
Identities = 29/52 (55%), Positives = 43/52 (82%)
Frame = -2 / +2
Query: 913 FQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
F++ W+LDPI+FGDYP MR+ L S+LPTF+ ++K +++K DF+GVNHYT+
Sbjct: 8 FEVDWFLDPIFFGDYPREMREMLSSNLPTFTSEEKRLLQSKADFIGVNHYTA 163
Score = 45.5 bits (93), Expect(3) = 4e-048
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -2 / +2
Query: 742 LQNPNDVYFYQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIY 563
+ +P ++ Y+ + + G IG A + VP G+ + Y+ ++Y N +Y
Sbjct: 182 IASPCNIKSYEGNALVQAVGERDGVAIGRPTAFPGYYDVPEGMELIVKYVNQRYENAPVY 361
Query: 562 VTENGMDEEDDQS 524
VTENG + D S
Sbjct: 362 VTENGFSQFSDNS 400
>gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016D19f, mRNA sequence
Length = 887
Score = 100 bits (213), Expect(3) = 1e-047
Identities = 35/96 (36%), Positives = 65/96 (67%)
Frame = -2 / +2
Query: 1033 YRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMR 854
YR K++A+Q G+VG+V+D + +++ D+ AAQR DF +GW+LDP+ G YP++M+
Sbjct: 83 YRNKYQASQKGKVGIVLDFNWYDAATDSPADKAAAQRARDFHVGWFLDPLLNGQYPKTMQ 262
Query: 853 QRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLIA 746
+ LP+F+ + + ++ +D++G+N YT+ +A
Sbjct: 263 DIVKERLPSFTPEQSKLVKGSVDYIGINQYTATYMA 370
Score = 70.7 bits (148), Expect(3) = 1e-047
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = -2 / +2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G IG++A S WL+IVP G++ +NYI +KYNNP I ++ENGMD+
Sbjct: 443 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGMDQ 580
Score = 57.9 bits (120), Expect(3) = 1e-047
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = -2 / +2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDN 392
T + VL+D +RV ++K YL + +AI DGA+V GYF WS LDN
Sbjct: 593 TREGVLHDASRVEFYKTYLAELKKAIDDGANVVGYFGWSLLDN 721
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 99.1 bits (210), Expect(4) = 7e-047
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / +1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 520 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSXKFGIVYVD 699
Query: 340 YKN 332
+ +
Sbjct: 700 FNS 708
Score = 66.6 bits (139), Expect(4) = 7e-047
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 370 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 507
Score = 46.4 bits (95), Expect(4) = 7e-047
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = -2 / +1
Query: 895 LDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
+DP+ G YP+ M+ + LP F+ + + ++ D++G+N YT+ L+
Sbjct: 148 VDPLINGHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLM 294
Score = 32.2 bits (64), Expect(4) = 7e-047
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / +1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 715 LDRHPKASAYWFRDLLR 765
>gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L05 5', mRNA sequence
Length = 616
Score = 132 bits (282), Expect(2) = 2e-045
Identities = 47/125 (37%), Positives = 77/125 (61%)
Frame = -2 / +1
Query: 715 YQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEE 536
Y + + G+ +G +A +E+LF+ P G+H+ + Y ++YNNPA+YV ENG+DE
Sbjct: 211 YDADNRSNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEG 390
Query: 535 DDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 356
++ S + + L D R+ Y +L + AIK +++GYF W+F+D FEW GY R G
Sbjct: 391 NNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRXG 570
Query: 355 IVYVD 341
++Y+D
Sbjct: 571 LIYID 585
Score = 71.2 bits (149), Expect(2) = 2e-045
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = -2 / +1
Query: 919 LDFQLGWYLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
++F LGW++DPI GDYP SMR L + LP F+ +R DFVG+N+YT+
Sbjct: 1 VEFMLGWFMDPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLNYYTT 162
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 95.9 bits (203), Expect(4) = 5e-045
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T ++ L+D +RV ++K YL + +AI DGA+V GYFAWS LDNFEW GYT +FGIVYVD
Sbjct: 293 TREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVYVD 114
Query: 340 Y 338
+
Sbjct: 113 F 111
Score = 70.7 bits (148), Expect(4) = 5e-045
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G IG++A S WL+IVP G++ +NYI +KYNNP I ++ENGMD+
Sbjct: 443 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGMDQ 306
Score = 44.6 bits (91), Expect(4) = 5e-045
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = -2 / -1
Query: 877 GDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLIA 746
G YP++M+ + LP+F+ + + ++ +D++G+N YT+ +A
Sbjct: 647 GQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQYTATYMA 516
Score = 26.7 bits (52), Expect(4) = 5e-045
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L R+PK SA WF +L+
Sbjct: 104 LKRYPKDSAYWFKNMLQ 54
>gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 3', mRNA sequence
Length = 709
Score = 99.1 bits (210), Expect(4) = 3e-043
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = -2 / -2
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYK 335
+ DT RV Y++ Y+ + +AI DGA V GYFAWS LDNFEW +GYT RFGIVYVDYK
Sbjct: 375 VQDTVRVRYYRDYITELKKAIDDGARVIGYFAWSLLDNFEWRLGYTARFGIVYVDYK 205
Score = 69.3 bits (145), Expect(4) = 3e-043
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -2 / -2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSAT 518
+G IG A S WL+IVPWG++K++ Y+ ++Y NP + + ENGMD+ + S T
Sbjct: 540 NGVPIGAHANSYWLYIVPWGINKAVTYVKERYGNPTMILAENGMDQPGNVSIT 382
Score = 35.0 bits (70), Expect(4) = 3e-043
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 835 LPTFSEKDKEFMRNKIDFVGVNHYTS 758
LP FS + ++ ID+VG+N YTS
Sbjct: 702 LPRFSADESTMIKGSIDYVGINQYTS 625
Score = 28.6 bits (56), Expect(4) = 3e-043
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2 / -2
Query: 328 LSRHPKASALWFSRLL 281
L R+PK SALWF +L
Sbjct: 201 LKRYPKDSALWFKNML 154
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 99.1 bits (210), Expect(3) = 5e-043
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = -2 / +3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 393 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 572
Query: 340 Y 338
+
Sbjct: 573 F 575
Score = 66.6 bits (139), Expect(3) = 5e-043
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 243 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 380
Score = 47.8 bits (98), Expect(3) = 5e-043
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = -2 / +3
Query: 898 YLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
++DP+ G YP+ M+ + LP F+ + + ++ D++G+N YT+ L+
Sbjct: 18 FVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLM 167
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 95.9 bits (203), Expect(3) = 2e-042
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = -2 / +1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T ++ L+D +RV ++K YL + +AI DGA+V GYFAWS LDNFEW GYT +FGIVYVD
Sbjct: 394 TREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVYVD 573
Query: 340 Y 338
+
Sbjct: 574 F 576
Score = 70.7 bits (148), Expect(3) = 2e-042
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G IG++A S WL+IVP G++ +NYI +KYNNP I ++ENGMD+
Sbjct: 244 NGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGMDQ 381
Score = 44.6 bits (91), Expect(3) = 2e-042
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = -2 / +1
Query: 877 GDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLIA 746
G YP++M+ + LP+F+ + + ++ +D++G+N YT+ +A
Sbjct: 40 GQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQYTATYMA 171
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 99.6 bits (211), Expect(4) = 3e-042
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 400 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Query: 340 YKN 332
+ +
Sbjct: 220 FNS 212
Score = 66.6 bits (139), Expect(4) = 3e-042
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 413
Score = 32.2 bits (64), Expect(4) = 3e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 205 LDRHPKASAYWFRDLLR 155
Score = 30.4 bits (60), Expect(4) = 3e-042
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2 / -2
Query: 835 LPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
LP F+ + + + D++G+N YT+ L+
Sbjct: 713 LPKFTPAEAKMVMGSADYIGINQYTASLM 627
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 99.6 bits (211), Expect(4) = 3e-042
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 396 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 217
Query: 340 YKN 332
+ +
Sbjct: 216 FNS 208
Score = 66.6 bits (139), Expect(4) = 3e-042
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 546 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 409
Score = 32.2 bits (64), Expect(4) = 3e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 201 LDRHPKASAYWFRDLLR 151
Score = 30.4 bits (60), Expect(4) = 3e-042
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2 / -2
Query: 835 LPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
LP F+ + + + D++G+N YT+ L+
Sbjct: 708 LPKFTPAEAKMVMGSADYIGINQYTASLM 622
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 99.6 bits (211), Expect(4) = 3e-042
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 340 YKN 332
+ +
Sbjct: 199 FNS 191
Score = 66.6 bits (139), Expect(4) = 3e-042
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 392
Score = 32.2 bits (64), Expect(4) = 3e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
Score = 30.4 bits (60), Expect(4) = 3e-042
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2 / -1
Query: 835 LPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
LP F+ + + + D++G+N YT+ L+
Sbjct: 691 LPKFTPAEAKMVMGSADYIGINQYTASLM 605
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 96.4 bits (204), Expect(2) = 7e-042
Identities = 36/82 (43%), Positives = 53/82 (64%)
Frame = -2 / +2
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ +G IG+RA S WL+IVP G+ +NY+ +YN+P IY+TENGMD+ + L L
Sbjct: 98 FKNGRAIGDRANSIWLYIVPRGMRSLMNYVKNRYNSPPIYITENGMDDSNSPFIALKDAL 277
Query: 502 NDTTRVGYFKGYLNSVAQAIKD 437
DT R+ Y YL ++A +IK+
Sbjct: 278 KDTKRIKYHNDYLTNLAASIKE 343
Score = 95.0 bits (201), Expect(2) = 7e-042
Identities = 38/70 (54%), Positives = 46/70 (65%)
Frame = -2 / +2
Query: 463 NSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDYKNGLSRHPKASALWFSRL 284
N A +DG DVRGYFAWS LDN+EWA GY+ RFG+ +VDY + L R+PK+S F L
Sbjct: 320 NLAASIKEDGCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYNDKLKRYPKSSVQXFKSL 499
Query: 283 LKGEAGTGTS 254
L G TS
Sbjct: 500 LSSS*G*ATS 529
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 99.6 bits (211), Expect(4) = 9e-042
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 340 YKN 332
+ +
Sbjct: 199 FNS 191
Score = 66.6 bits (139), Expect(4) = 9e-042
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 392
Score = 32.2 bits (64), Expect(4) = 9e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
Score = 28.6 bits (56), Expect(4) = 9e-042
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -2 / -1
Query: 832 PTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
P F+ + + + D++G+N YT+ L+
Sbjct: 688 PKFTPAEAKMVMGSADYIGINQYTASLM 605
>gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_J07 5', mRNA sequence
Length = 642
Score = 93.6 bits (198), Expect(4) = 9e-042
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / +3
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 324 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 491
Score = 72.1 bits (151), Expect(4) = 9e-042
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 159 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 311
Score = 30.9 bits (61), Expect(4) = 9e-042
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2 / +3
Query: 826 FSEKDKEFMRNKIDFVGVNHYTS 758
FS + ++ ID+VG+N YTS
Sbjct: 6 FSADESRMVKGSIDYVGINQYTS 74
Score = 30.4 bits (60), Expect(4) = 9e-042
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +3
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 492 NTLKRYPKDSALWFKNML 545
>gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. vulgare cDNA clone HF12O16
5-PRIME, mRNA sequence
Length = 615
Score = 93.6 bits (198), Expect(4) = 9e-042
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / +1
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 334 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 501
Score = 72.1 bits (151), Expect(4) = 9e-042
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 169 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 321
Score = 30.9 bits (61), Expect(4) = 9e-042
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2 / +1
Query: 826 FSEKDKEFMRNKIDFVGVNHYTS 758
FS + ++ ID+VG+N YTS
Sbjct: 16 FSADESRMVKGSIDYVGINQYTS 84
Score = 30.4 bits (60), Expect(4) = 9e-042
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 502 NTLKRYPKDSALWFKNML 555
>gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11I05
5-PRIME, mRNA sequence
Length = 655
Score = 135 bits (289), Expect(2) = 1e-041
Identities = 48/125 (38%), Positives = 78/125 (62%)
Frame = -2 / +1
Query: 715 YQVQQMERIEKWNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEE 536
Y + + G+ +G +A +E+LF+ P G+H+ + Y ++YNNPA+YV ENG+DE
Sbjct: 193 YDADNRSNVTGFRDGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEG 372
Query: 535 DDQSATLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFG 356
++ S + + L D R+ Y +L + AIK +++GYF W+F+D FEW GY RFG
Sbjct: 373 NNSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFG 552
Query: 355 IVYVD 341
++Y+D
Sbjct: 553 LIYID 567
Score = 55.1 bits (114), Expect(2) = 1e-041
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = -2 / +1
Query: 892 DPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
DPI GDYP SMR L + LP F+ +R DFVG+N+YT+
Sbjct: 10 DPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLNYYTT 144
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 99.6 bits (211), Expect(3) = 4e-041
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / +1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 367 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 546
Query: 340 YKN 332
+ +
Sbjct: 547 FNS 555
Score = 66.6 bits (139), Expect(3) = 4e-041
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 217 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 354
Score = 40.9 bits (83), Expect(3) = 4e-041
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -2 / +1
Query: 877 GDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
G YP+ M+ + LP F+ + + ++ D++G+N YT+ L+
Sbjct: 13 GHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLM 141
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 99.6 bits (211), Expect(4) = 3e-040
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 378 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 199
Query: 340 YKN 332
+ +
Sbjct: 198 FNS 190
Score = 66.6 bits (139), Expect(4) = 3e-040
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 528 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 391
Score = 32.2 bits (64), Expect(4) = 3e-040
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 183 LDRHPKASAYWFRDLLR 133
Score = 23.5 bits (45), Expect(4) = 3e-040
Identities = 6/22 (27%), Positives = 14/22 (63%)
Frame = -2 / -1
Query: 814 DKEFMRNKIDFVGVNHYTSRLI 749
+ + + D++G+N YT+ L+
Sbjct: 670 EAKMVMGSADYIGINQYTASLM 605
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 99.6 bits (211), Expect(4) = 4e-040
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 410 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 231
Query: 340 YKN 332
+ +
Sbjct: 230 FNS 222
Score = 66.6 bits (139), Expect(4) = 4e-040
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 560 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 423
Score = 32.2 bits (64), Expect(4) = 4e-040
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 215 LDRHPKASAYWFRDLLR 165
Score = 23.1 bits (44), Expect(4) = 4e-040
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2 / -3
Query: 787 DFVGVNHYTSRLI 749
D++G+N YT+ L+
Sbjct: 674 DYIGINQYTASLM 636
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 99.6 bits (211), Expect(4) = 4e-040
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 405 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 226
Query: 340 YKN 332
+ +
Sbjct: 225 FNS 217
Score = 66.6 bits (139), Expect(4) = 4e-040
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 555 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 418
Score = 32.2 bits (64), Expect(4) = 4e-040
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 210 LDRHPKASAYWFRDLLR 160
Score = 23.1 bits (44), Expect(4) = 4e-040
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 787 DFVGVNHYTSRLI 749
D++G+N YT+ L+
Sbjct: 669 DYIGINQYTASLM 631
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 99.6 bits (211), Expect(4) = 4e-040
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 391 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 212
Query: 340 YKN 332
+ +
Sbjct: 211 FNS 203
Score = 66.6 bits (139), Expect(4) = 4e-040
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 541 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 404
Score = 32.2 bits (64), Expect(4) = 4e-040
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 196 LDRHPKASAYWFRDLLR 146
Score = 23.1 bits (44), Expect(4) = 4e-040
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2 / -3
Query: 787 DFVGVNHYTSRLI 749
D++G+N YT+ L+
Sbjct: 656 DYIGINQYTASLM 618
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 99.6 bits (211), Expect(4) = 4e-040
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 374 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 195
Query: 340 YKN 332
+ +
Sbjct: 194 FNS 186
Score = 66.6 bits (139), Expect(4) = 4e-040
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 524 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 387
Score = 32.2 bits (64), Expect(4) = 4e-040
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 179 LDRHPKASAYWFRDLLR 129
Score = 23.1 bits (44), Expect(4) = 4e-040
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 787 DFVGVNHYTSRLI 749
D++G+N YT+ L+
Sbjct: 638 DYIGINQYTASLM 600
>gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF04E16
5-PRIME, mRNA sequence
Length = 590
Score = 93.6 bits (198), Expect(4) = 5e-040
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / +2
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 290 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 457
Score = 72.1 bits (151), Expect(4) = 5e-040
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 125 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 277
Score = 30.4 bits (60), Expect(4) = 5e-040
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +2
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 458 NTLKRYPKDSALWFKNML 511
Score = 24.9 bits (48), Expect(4) = 5e-040
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 790 IDFVGVNHYTS 758
ID+VG+N YTS
Sbjct: 8 IDYVGINQYTS 40
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 400 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Query: 340 YKN 332
+ +
Sbjct: 220 FNS 212
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 413
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 205 LDRHPKASAYWFRDLLR 155
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 340 YKN 332
+ +
Sbjct: 199 FNS 191
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 529 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 392
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 399 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 220
Query: 340 YKN 332
+ +
Sbjct: 219 FNS 211
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 549 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 412
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 204 LDRHPKASAYWFRDLLR 154
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 405 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 226
Query: 340 YKN 332
+ +
Sbjct: 225 FNS 217
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 555 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 418
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 210 LDRHPKASAYWFRDLLR 160
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 397 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 218
Query: 340 YKN 332
+ +
Sbjct: 217 FNS 209
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 547 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 410
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 202 LDRHPKASAYWFRDLLR 152
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / +3
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 186 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 365
Query: 340 YKN 332
+ +
Sbjct: 366 FNS 374
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 36 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 173
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / +3
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 381 LDRHPKASAYWFRDLLR 431
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 99.6 bits (211), Expect(3) = 1e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 400 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 221
Query: 340 YKN 332
+ +
Sbjct: 220 FNS 212
Score = 66.6 bits (139), Expect(3) = 1e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 550 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 413
Score = 32.2 bits (64), Expect(3) = 1e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 205 LDRHPKASAYWFRDLLR 155
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 99.6 bits (211), Expect(3) = 2e-038
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / +2
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 167 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 346
Query: 340 YKN 332
+ +
Sbjct: 347 FNS 355
Score = 66.6 bits (139), Expect(3) = 2e-038
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 17 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 154
Score = 32.2 bits (64), Expect(3) = 2e-038
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / +2
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 362 LDRHPKASAYWFRDLLR 412
>gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012I04f, mRNA sequence
Length = 692
Score = 106 bits (227), Expect(2) = 4e-038
Identities = 43/95 (45%), Positives = 61/95 (64%)
Frame = -2 / +2
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V YR K++ Q G +G+++D EP S++ DQ AAQR DF +GW+LDPI G YP
Sbjct: 56 VQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPS 235
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP FS + ++ ID+VG+N YTS
Sbjct: 236 SMLKIVGNRLPGFSADESRMVKGSIDYVGINQYTS 340
Score = 72.1 bits (151), Expect(2) = 4e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 425 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 577
>gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. vulgare cDNA clone HF01M24
5-PRIME, mRNA sequence
Length = 678
Score = 106 bits (227), Expect(2) = 4e-038
Identities = 43/95 (45%), Positives = 61/95 (64%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V YR K++ Q G +G+++D EP S++ DQ AAQR DF +GW+LDPI G YP
Sbjct: 94 VQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPS 273
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP FS + ++ ID+VG+N YTS
Sbjct: 274 SMLKIVGNRLPGFSADESRMVKGSIDYVGINQYTS 378
Score = 72.1 bits (151), Expect(2) = 4e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 463 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 615
>gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF09N16
5-PRIME, mRNA sequence
Length = 587
Score = 106 bits (227), Expect(2) = 4e-038
Identities = 43/95 (45%), Positives = 61/95 (64%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V YR K++ Q G +G+++D EP S++ DQ AAQR DF +GW+LDPI G YP
Sbjct: 4 VQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPS 183
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP FS + ++ ID+VG+N YTS
Sbjct: 184 SMLKIVGNRLPGFSADESRMVKGSIDYVGINQYTS 288
Score = 72.1 bits (151), Expect(2) = 4e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 373 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 525
>gb|BF254222.2|BF254222 HVSMEf0003F20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003F20f, mRNA sequence
Length = 556
Score = 91.3 bits (193), Expect(3) = 4e-038
Identities = 32/82 (39%), Positives = 54/82 (65%)
Frame = -2 / +3
Query: 682 WNSGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSATLDQVL 503
+ +G+ IG++A S WL+IVP + + +NY+ +YN P +Y+TENGMD+ + L + L
Sbjct: 234 FRNGKPIGDKAHSIWLYIVPGSMKRLMNYVKDRYNTPTVYITENGMDDSNSPFIFLKKAL 413
Query: 502 NDTTRVGYFKGYLNSVAQAIKD 437
+DT R+ Y YL ++A +I +
Sbjct: 414 HDTKRINYHNDYLTNLADSITE 479
Score = 64.8 bits (135), Expect(3) = 4e-038
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = -2 / +3
Query: 898 YLDPIYFGDYPESMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
+ DP +FGDYP +MR R+ LP F + + ++ +DFVG+NHYT+
Sbjct: 9 FADPFFFGDYPATMRSRVRERLPRFMTTEADLVKGSLDFVGINHYTT 149
Score = 40.9 bits (83), Expect(3) = 4e-038
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -2 / +3
Query: 442 KDGADVRGYFAWSFLDNFEWAMG 374
+D DV YFAWS LDN+EW G
Sbjct: 477 EDSCDVPRYFAWSLLDNWEWTAG 545
>gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. vulgare cDNA clone HF12E04
5-PRIME, mRNA sequence
Length = 570
Score = 105 bits (225), Expect(2) = 7e-038
Identities = 43/95 (45%), Positives = 61/95 (64%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V YR K++ Q G +G+++D EP S++ DQ AAQR DF +GW+LDPI G YP
Sbjct: 46 VQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPS 225
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP FS + ++ ID+VG+N YTS
Sbjct: 226 SMLKIVGNWLPGFSADESRMVKGSIDYVGINQYTS 330
Score = 72.1 bits (151), Expect(2) = 7e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 415 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 567
>gb|BJ462547.1|BJ462547 BJ462547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 5', mRNA sequence
Length = 657
Score = 104 bits (221), Expect(3) = 7e-038
Identities = 42/92 (45%), Positives = 57/92 (61%)
Frame = -2 / +1
Query: 1033 YRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMR 854
YR K++ Q G +G+++D EP S N DQ AAQR DF LGW+LDPI G YP +M
Sbjct: 22 YREKYQPHQKGRIGILLDFVWYEPLSNNNADQAAAQRARDFHLGWFLDPIIHGRYPFTML 201
Query: 853 QRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
+ + LP FS + ++ ID+VG+N YTS
Sbjct: 202 EIVKERLPRFSADESTMIKGSIDYVGINQYTS 297
Score = 69.3 bits (145), Expect(3) = 7e-038
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQSAT 518
+G IG A S WL+IVPWG++K++ Y+ ++Y NP + + ENGMD+ + S T
Sbjct: 382 NGVPIGAHANSYWLYIVPWGINKAVTYVKERYGNPTMILAENGMDQPGNVSIT 540
Score = 22.6 bits (43), Expect(3) = 7e-038
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2 / +2
Query: 427 VRGYFAWSFL 398
V GYFAWS L
Sbjct: 626 VIGYFAWSLL 655
>gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B16
5-PRIME, mRNA sequence
Length = 611
Score = 93.6 bits (198), Expect(3) = 7e-038
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / +1
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 208 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 375
Score = 72.1 bits (151), Expect(3) = 7e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 43 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 195
Score = 30.4 bits (60), Expect(3) = 7e-038
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 376 NTLKRYPKDSALWFKNML 429
>gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025H09f, mRNA sequence
Length = 565
Score = 93.6 bits (198), Expect(3) = 7e-038
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / +1
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 217 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 384
Score = 72.1 bits (151), Expect(3) = 7e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 52 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 204
Score = 30.4 bits (60), Expect(3) = 7e-038
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 385 NTLKRYPKDSALWFKNML 438
>gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K11f, mRNA sequence
Length = 503
Score = 93.6 bits (198), Expect(3) = 7e-038
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / +1
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 232 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 399
Score = 72.1 bits (151), Expect(3) = 7e-038
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 67 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 219
Score = 30.4 bits (60), Expect(3) = 7e-038
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 400 NTLKRYPKDSALWFKNML 453
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 99.6 bits (211), Expect(3) = 1e-037
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 420 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 241
Query: 340 YKN 332
+ +
Sbjct: 240 FNS 232
Score = 63.4 bits (132), Expect(3) = 1e-037
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = -2 / -1
Query: 664 IGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 558 IGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 433
Score = 32.2 bits (64), Expect(3) = 1e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 225 LDRHPKASAYWFRDLLR 175
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 99.6 bits (211), Expect(3) = 1e-037
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -2 / -1
Query: 520 TLDQVLNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVD 341
T DQ L DTTRV +++ YL+ + +AI GA+V GYFAWS LDNFEW GY+ +FGIVYVD
Sbjct: 379 TRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYVD 200
Query: 340 YKN 332
+ +
Sbjct: 199 FNS 191
Score = 63.4 bits (132), Expect(3) = 1e-037
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = -2 / -1
Query: 664 IGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 517 IGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 392
Score = 32.2 bits (64), Expect(3) = 1e-037
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -1
Query: 328 LSRHPKASALWFSRLLK 278
L RHPKASA WF LL+
Sbjct: 184 LDRHPKASAYWFRDLLR 134
>gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0010E10f, mRNA sequence
Length = 1046
Score = 106 bits (227), Expect(2) = 3e-037
Identities = 43/95 (45%), Positives = 61/95 (64%)
Frame = -2 / +1
Query: 1042 VDVYRRKFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPE 863
V YR K++ Q G +G+++D EP S++ DQ AAQR DF +GW+LDPI G YP
Sbjct: 82 VQRYREKYQPHQKGRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPS 261
Query: 862 SMRQRLGSDLPTFSEKDKEFMRNKIDFVGVNHYTS 758
SM + +G+ LP FS + ++ ID+VG+N YTS
Sbjct: 262 SMLKIVGNRLPGFSADESRMVKGSIDYVGINQYTS 366
Score = 68.9 bits (144), Expect(2) = 3e-037
Identities = 22/45 (48%), Positives = 36/45 (80%)
Frame = -2 / +1
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMD 542
+G IG RA S+WL+IVPWG++K++ Y+ +++ NP + ++ENGMD
Sbjct: 451 NGVPIGPRANSDWLYIVPWGMNKAVTYVKERFGNPTMILSENGMD 585
>gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006L16f, mRNA sequence
Length = 833
Score = 93.6 bits (198), Expect(3) = 6e-037
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / -3
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 573 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 406
Score = 68.9 bits (144), Expect(3) = 6e-037
Identities = 23/51 (45%), Positives = 38/51 (74%)
Frame = -2 / -3
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
+G IG RA S+W +IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 738 NGVPIGLRANSDWFYIVPWGMNKAVTYVKERYGNPPMILSENGMDQPGNVS 586
Score = 30.4 bits (60), Expect(3) = 6e-037
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / -3
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 405 NTLKRYPKDSALWFKNML 352
>gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. vulgare cDNA clone HF01M24
3-PRIME, mRNA sequence
Length = 681
Score = 93.6 bits (198), Expect(3) = 9e-037
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = -2 / -1
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYVDY 338
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYVD+
Sbjct: 531 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYVDF 364
Score = 68.4 bits (143), Expect(3) = 9e-037
Identities = 22/46 (47%), Positives = 36/46 (78%)
Frame = -2 / -1
Query: 661 GERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
G RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 681 GPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 544
Score = 30.4 bits (60), Expect(3) = 9e-037
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / -1
Query: 334 NGLSRHPKASALWFSRLL 281
N L R+PK SALWF +L
Sbjct: 363 NTLKRYPKDSALWFKNML 310
>gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080E16f, mRNA sequence
Length = 713
Score = 89.5 bits (189), Expect(3) = 1e-036
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = -2 / +2
Query: 505 LNDTTRVGYFKGYLNSVAQAIKDGADVRGYFAWSFLDNFEWAMGYTKRFGIVYV 344
++DT R+ Y++ Y+ + +AI +GA V GYFAWS LDNFEW +GYT RFGIVYV
Sbjct: 158 VHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYV 319
Score = 70.3 bits (147), Expect(3) = 1e-036
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -2 / +2
Query: 664 IGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDEEDDQS 524
IG RA S+WL+IVPWG++K++ Y+ ++Y NP + ++ENGMD+ + S
Sbjct: 5 IGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGMDQPGNVS 145
Score = 32.2 bits (64), Expect(3) = 1e-036
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2 / +2
Query: 340 YKNGLSRHPKASALWFSRLL 281
Y N L R+PK SALWF +L
Sbjct: 320 YFNTLKRYPKDSALWFKNML 379
>gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 5', mRNA sequence
Length = 604
Score = 100 bits (212), Expect(3) = 1e-036
Identities = 37/92 (40%), Positives = 60/92 (65%)
Frame = -2 / +2
Query: 1024 KFKAAQGGEVGLVVDCECTEPFSENVEDQIAAQRRLDFQLGWYLDPIYFGDYPESMRQRL 845
K++AAQ G+VG+V+D E + + EDQ AAQR DF +GW++DP+ G YP+ M+ R+
Sbjct: 32 KYQAAQKGKVGIVLDFNWYEALTNSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDRV 211
Query: 844 GSDLPTFSEKDKEFMRNKIDFVGVNHYTSRLI 749
LP F+ + + + D++G+N YT+ L+
Sbjct: 212 KERLPKFTPAEAKMVMGSADYIGINQYTASLM 307
Score = 66.6 bits (139), Expect(3) = 1e-036
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = -2 / +2
Query: 676 SGEKIGERAASEWLFIVPWGLHKSLNYIAKKYNNPAIYVTENGMDE 539
+G+ IG +A S WL+IVP G++ ++Y+++KY NP I +TENGMD+
Sbjct: 383 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGMDQ 520
Score = 25.4 bits (49), Expect(3) = 1e-036
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1 / +1
Query: 521 NA*PGPKRHDEGRLLQRVPQ 462
+A P P HDEG +L +PQ
Sbjct: 532 HARPVPAGHDEGPVLPELPQ 591
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 510,975,173
Number of Sequences: 312970
Number of extensions: 7877008
Number of successful extensions: 65715
Number of sequences better than 1.0e-020: 198
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 13331255311
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)