TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716368.2.1
(1356 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 366 e-101
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 199 1e-095
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 324 7e-088
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 199 7e-086
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 247 1e-067
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 244 8e-067
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 247 4e-066
gb|BI958556.1|BI958556 HVSMEn0015J19f Hordeum vulgare rachi... 150 6e-066
gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedl... 130 2e-061
gb|BF259315.3|BF259315 HVSMEf0019E07f Hordeum vulgare seedl... 179 7e-061
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 154 6e-060
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 149 2e-058
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 112 4e-058
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 136 3e-056
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 158 2e-055
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 214 8e-055
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 193 4e-054
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 110 2e-053
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 106 1e-052
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 106 3e-052
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 106 6e-047
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 78 2e-046
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 135 3e-046
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 101 6e-046
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 128 2e-045
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 120 1e-044
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 112 4e-044
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 106 5e-044
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 162 2e-043
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 116 2e-043
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 176 3e-043
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 111 6e-042
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 111 4e-041
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 106 1e-040
gb|BU983370.1|BU983370 HA29H20r HA Hordeum vulgare subsp. v... 166 3e-040
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 105 3e-040
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 111 9e-040
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 111 3e-039
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 108 7e-039
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 99 3e-038
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 76 6e-038
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 157 1e-037
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 113 4e-037
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 94 6e-037
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 94 1e-036
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 87 1e-036
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 112 1e-036
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 111 1e-036
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 94 1e-036
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 76 3e-036
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 110 5e-036
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 151 9e-036
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 104 3e-034
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 91 4e-034
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 145 6e-034
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 145 6e-034
gb|AJ463236.1|AJ463236 AJ463236 S00002 Hordeum vulgare subs... 84 2e-033
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 86 4e-033
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 76 4e-033
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 73 5e-033
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 133 7e-033
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 113 1e-032
gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DA... 140 1e-032
gb|BG365226.2|BG365226 HVSMEi0001O04f Hordeum vulgare 20 DA... 140 2e-032
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 90 4e-032
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 76 9e-032
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 87 2e-031
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 76 4e-031
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 84 8e-031
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 73 1e-030
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 82 2e-030
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 84 3e-030
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 105 1e-029
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 76 2e-029
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 78 3e-029
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 95 6e-029
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 77 7e-029
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 69 1e-028
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 77 1e-028
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 84 2e-028
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 126 3e-028
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 65 5e-028
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 76 8e-028
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 124 9e-028
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 75 2e-027
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 80 3e-027
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 75 4e-027
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 73 7e-027
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 75 1e-026
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 75 3e-026
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 76 5e-026
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 69 2e-025
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 74 2e-025
gb|BG367014.2|BG367014 HVSMEi0009N03f Hordeum vulgare 20 DA... 116 4e-025
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 82 4e-025
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 73 6e-025
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 73 6e-025
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 71 8e-025
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 76 8e-025
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 76 2e-024
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 69 3e-024
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 71 4e-024
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 69 7e-024
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 57 9e-024
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 60 1e-023
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 78 1e-023
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 75 1e-023
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 106 1e-023
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 110 2e-023
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 68 3e-023
gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow st... 75 4e-023
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 76 6e-023
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 75 1e-022
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 69 1e-022
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 107 1e-022
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 91 2e-022
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 87 3e-022
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 77 5e-022
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 77 5e-022
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 77 5e-022
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 75 8e-022
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 103 3e-021
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 103 3e-021
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 60 3e-021
gb|AJ463237.1|AJ463237 AJ463237 S00002 Hordeum vulgare subs... 79 5e-021
gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. v... 77 5e-021
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 78 9e-021
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 78 9e-021
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 366 bits (793), Expect(2) = e-101
Identities = 145/195 (74%), Positives = 166/195 (85%)
Frame = -1 / +3
Query: 915 SMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSG 736
SMIAAGS+PL+ G+GCGACY+VKC++N+ACSG+PVT+VITD SPG L+PGE HFDMSG
Sbjct: 6 SMIAAGSSPLFMKGKGCGACYDVKCSSNSACSGKPVTVVITDLSPGNLYPGEPCHFDMSG 185
Query: 735 TAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDD 556
TA+GAMA+PGMADKLRAGGV+R+ Y+RVPCKY GVNIAFKVDQG+NP+YF LIEFEDDD
Sbjct: 186 TALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFKVDQGSNPFYFKTLIEFEDDD 365
Query: 555 GDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAA 376
GDL AV L EAGSG WT M +WGA WRLNNG +L+APF L+LTSDS R LV NN I A
Sbjct: 366 GDLKAVALKEAGSGAWTQMTQDWGALWRLNNGNRLRAPFSLQLTSDSGRKLVINNVILAN 545
Query: 375 WKPGKTYRSLVNYP* 331
W G TYRSLVNYP*
Sbjct: 546 WNAGATYRSLVNYP* 590
Score = 237 bits (512), Expect = 1e-061
Identities = 119/195 (61%), Positives = 125/195 (64%)
Frame = +2 / -2
Query: 332 QG*LTKER*VLPGFHAAGMALLATSTLRESEVSRSPNGALSFLPLLRRHVAPQLCAIGVQ 511
QG* T+ER V P F A M LL TS L ESEVS S GA S LPLLRRH APQ C I VQ
Sbjct: 589 QG*FTRERYVAPAFQLARMTLLMTSFLPESEVSWSEKGARSRLPLLRRHNAPQSCVICVQ 410
Query: 512 TPLPAXXXXXXXXXXXXXXXXXXXXK*YGFAP*STLNAMLTPVYLHGTLLYRILSTPPAR 691
PLPA K* G P STL AMLTP YLHGTLLY IL TPPAR
Sbjct: 409 APLPASLRATALRSPSSSSNSIRVLK*KGLEPWSTLKAMLTPGYLHGTLLYCILMTPPAR 230
Query: 692 SLSAMPGRAMAPMAVPLMSKCSTSPGNSPPGDWSVITMVTGWPEHAALVVHFTS*QAPQP 871
SLSAMPG AMAP AVPLMSK SPG PG SV+T VTG+PE A L+ H TS* APQP
Sbjct: 229 SLSAMPGFAMAPKAVPLMSKWHGSPGYRLPGLKSVMTTVTGFPEQAELLEHLTS*HAPQP 50
Query: 872 SPPLYSGVLPAAIIE 916
P + G LPAAII+
Sbjct: 49 LPFMNRGELPAAIID 5
Score = 83.5 bits (176), Expect(2) = 2e-032
Identities = 41/66 (62%), Positives = 46/66 (69%)
Frame = +1 / -1
Query: 331 SGVVDQGAVGLAGLPRGRDGVVGDEHPAGVGGEPEPERRFELPAVVEAPRGAPVVRHRSP 510
SGVV QGAV +G+P G D VV DE PAGVGGE E E + AVVEAP+ APV+ H P
Sbjct: 590 SGVVHQGAVRGSGIPVGEDDVVDDELPAGVGGELEREGGAQPVAVVEAPQRAPVLCHLRP 411
Query: 511 DAAAGL 528
AAAGL
Sbjct: 410 GAAAGL 393
Score = 80.3 bits (169), Expect(2) = 4e-023
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = -3 / +2
Query: 511 LDSYGAQLGRHVAPQQRQEAQSAVRAPAHLRLPQGARRQQRHPGRVEARQDLPLLGQLPL 332
LD+ LGR VAPQQRQ A + APAHLRL Q AR QQRHP ++E R +PL G+LPL
Sbjct: 410 LDANDTGLGRVVAPQQRQPAARPLLAPAHLRLRQEARHQQRHPRQLECRSHVPLPGELPL 589
Score = 76.7 bits (161), Expect(2) = 2e-032
Identities = 44/104 (42%), Positives = 48/104 (46%)
Frame = +1 / -1
Query: 604 ALIHLERDVDAGVLARHPPVQDPEHAASAELVXXXXXXXXXXXXXXXVKVLDLAGEQPAR 783
AL+HLE +VDA VLA H V + AA AELV VK+ LAG Q A
Sbjct: 317 ALVHLEGNVDARVLAWHSLVLHSDDAAGAELVGHARLRHGAQGGAAHVKMARLAGVQVAG 138
Query: 784 GLVGDYDGHGLAGARGVGRXXXXXXXXXXXXSPVQWRAPGGDHR 915
VGD GH L GA V R Q APGGDHR
Sbjct: 137 AQVGDDHGHRLPGAGRVARAFNIIARAAALALHEQRGAPGGDHR 6
Score = 48.3 bits (99), Expect(2) = 4e-023
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -3 / +2
Query: 697 QAPRWRRAQDPVQEGAVQVHRRQHRVQGGSGREP 596
QAPR RR Q+ VQE A+QV RQH +QGG G +P
Sbjct: 224 QAPRRRRHQNAVQESAMQVPWRQHCLQGGPGLQP 325
Score = 22.6 bits (43), Expect(2) = e-101
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1 / +2
Query: 297 CASGCCEWR 271
CASGCC R
Sbjct: 665 CASGCCHRR 691
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 199 bits (429), Expect(4) = 1e-095
Identities = 75/101 (74%), Positives = 88/101 (87%)
Frame = -1 / +2
Query: 765 GEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYF 586
GE HFDMSGT+MGAMA+PGMADKLRA G+++I Y+RVPCKY G+NIAFKVDQG+NP+Y
Sbjct: 206 GEAAHFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYL 385
Query: 585 DVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
+VLIEFEDDDGDL+ VDLMEA G WTPM NWGA +RLN+
Sbjct: 386 EVLIEFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNS 508
Score = 134 bits (288), Expect(4) = 1e-095
Identities = 50/64 (78%), Positives = 56/64 (87%)
Frame = -1 / +2
Query: 966 DGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQ 787
DGGACGYQ+AVG +PF SMIAAG+ LYRGG+GCGACYEVKCT N ACSGQP T+VITD+
Sbjct: 2 DGGACGYQSAVGNRPFSSMIAAGNPSLYRGGKGCGACYEVKCTGNQACSGQPATVVITDE 181
Query: 786 SPGG 775
PGG
Sbjct: 182 CPGG 193
Score = 116 bits (248), Expect(3) = 1e-049
Identities = 55/105 (52%), Positives = 61/105 (58%)
Frame = +2 / -1
Query: 467 LRRHVAPQLCAIGVQTPLPAXXXXXXXXXXXXXXXXXXXXK*YGFAP*STLNAMLTPVYL 646
LRR+ APQ C +GVQ P A +* G P STL AM P YL
Sbjct: 504 LRRYSAPQFCTMGVQVPQLASMRSTVLRSPSSSSNSISTSR*KGLEPWSTLKAMFMPGYL 325
Query: 647 HGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNSPP 781
HGTLLY IL+ P ARSLSAMPG AMAPM VPLMSK + SP + P
Sbjct: 324 HGTLLYWILTIPLARSLSAMPGFAMAPMEVPLMSKWAASPRQAAP 190
Score = 94.1 bits (199), Expect(3) = 1e-049
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / -1
Query: 773 SPPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW* 949
+PPG SV+T V GWPEHA L VH TS*QAPQP PPL S PAAII+ G FPTA+W*
Sbjct: 195 APPGHSSVMTTVAGWPEHAWLPVHLTS*QAPQPLPPL*SDGFPAAIIDEKGRFPTALW* 19
Score = 41.4 bits (84), Expect(4) = 1e-095
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / +1
Query: 393 NAIPAAWKPGKTYRSLVNYP* 331
N P +WK G TYRSLVNYP*
Sbjct: 586 NVFPVSWKAGATYRSLVNYP* 648
Score = 33.6 bits (67), Expect(4) = 1e-095
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1 / +2
Query: 468 NNGRKLKAPFGLRLTSDSRR 409
N G+ L+ PF LR+TSDSR+
Sbjct: 509 NTGKPLRGPFSLRVTSDSRQ 568
Score = 25.8 bits (50), Expect(3) = 1e-049
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / -2
Query: 335 G*LTKER*VLPGFHAAG 385
G*LTK+R*V P F G
Sbjct: 644 G*LTKDR*VAPAFQLTG 594
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 324 bits (702), Expect = 7e-088
Identities = 125/170 (73%), Positives = 146/170 (85%)
Frame = -1 / +3
Query: 900 GSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGA 721
GS+PL+ G+GCGACY+VKC++N+ACSG+PVT+VITD SPG L+PGE HFDMSGTA+GA
Sbjct: 15 GSSPLFMKGKGCGACYDVKCSSNSACSGKPVTVVITDLSPGNLYPGEPCHFDMSGTALGA 194
Query: 720 MARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSA 541
MA+PGMADKLRAGGV+R+ Y+RVPCKY GVNIAF+VDQG+NP+YF LIEFEDDDGDL A
Sbjct: 195 MAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFRVDQGSNPFYFKTLIEFEDDDGDLKA 374
Query: 540 VDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANN 391
V L EAGSG WT M +WGA WRLNNG +L+APF LRLT DS R LV NN
Sbjct: 375 VALKEAGSGAWTQMTQDWGALWRLNNGNRLRAPFSLRLTXDSGRKLVXNN 524
Score = 214 bits (461), Expect = 1e-054
Identities = 106/173 (61%), Positives = 110/173 (63%)
Frame = +2 / -1
Query: 383 GMALLATSTLRESEVSRSPNGALSFLPLLRRHVAPQLCAIGVQTPLPAXXXXXXXXXXXX 562
GM LL TS L ES VSRS GA S LPLLRRH APQ C I VQ PLPA
Sbjct: 532 GMTLLXTSFLPESXVSRSEKGARSRLPLLRRHNAPQSCVICVQAPLPASLRATALRSPSS 353
Query: 563 XXXXXXXXK*YGFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPL 742
K* G P STL AMLTP YLHGTLLY IL TPPARSLSAMPG AMAP AVPL
Sbjct: 352 SSNSIRVLK*KGLEPWSTLKAMLTPGYLHGTLLYCILMTPPARSLSAMPGFAMAPKAVPL 173
Query: 743 MSKCSTSPGNSPPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLP 901
MSK SPG PG SV+T VTG+PE A L+ H TS* APQP P + G LP
Sbjct: 172 MSKWHGSPGYRLPGLKSVMTTVTGFPEQAELLEHLTS*HAPQPLPFMNRGELP 14
>gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L18
5-PRIME, mRNA sequence
Length = 549
Score = 199 bits (429), Expect(2) = 7e-086
Identities = 75/101 (74%), Positives = 88/101 (87%)
Frame = -1 / +3
Query: 765 GEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYF 586
GE HFDMSGT+MGAMA+PGMADKLRA G+++I Y+RVPCKY G+NIAFKVDQG+NP+Y
Sbjct: 222 GEAAHFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYL 401
Query: 585 DVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
+VLIEFEDDDGDL+ VDLMEA G WTPM NWGA +RLN+
Sbjct: 402 EVLIEFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNS 524
Score = 139 bits (298), Expect(2) = 7e-086
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = -1 / +3
Query: 972 GSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVIT 793
GSDGGACGYQ+AVG +PF SMIAAG+ LYRGG+GCGACYEVKCT N ACSGQP T+VIT
Sbjct: 12 GSDGGACGYQSAVGNRPFSSMIAAGNPSLYRGGKGCGACYEVKCTGNQACSGQPATVVIT 191
Query: 792 DQSPGG 775
D+ PGG
Sbjct: 192 DECPGG 209
Score = 116 bits (248), Expect(2) = 2e-047
Identities = 55/105 (52%), Positives = 61/105 (58%)
Frame = +2 / -3
Query: 467 LRRHVAPQLCAIGVQTPLPAXXXXXXXXXXXXXXXXXXXXK*YGFAP*STLNAMLTPVYL 646
LRR+ APQ C +GVQ P A +* G P STL AM P YL
Sbjct: 520 LRRYSAPQFCTMGVQVPQLASMRSTVLRSPSSSSNSISTSR*KGLEPWSTLKAMFMPGYL 341
Query: 647 HGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNSPP 781
HGTLLY IL+ P ARSLSAMPG AMAPM VPLMSK + SP + P
Sbjct: 340 HGTLLYWILTIPLARSLSAMPGFAMAPMEVPLMSKWAASPRQAAP 206
Score = 94.1 bits (199), Expect(2) = 2e-047
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / -3
Query: 773 SPPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW* 949
+PPG SV+T V GWPEHA L VH TS*QAPQP PPL S PAAII+ G FPTA+W*
Sbjct: 211 APPGHSSVMTTVAGWPEHAWLPVHLTS*QAPQPLPPL*SDGFPAAIIDEKGRFPTALW* 35
>gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L12f, mRNA sequence
Length = 871
Score = 247 bits (533), Expect(2) = 1e-067
Identities = 96/154 (62%), Positives = 120/154 (77%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NG GSDGGACGYQ AV ++PF SMIAAG +Y+ G+GCG+CY+VKCT + +CS PVT+
Sbjct: 58 NGAGSDGGACGYQDAVDQQPFSSMIAAGGPSIYQDGKGCGSCYQVKCTGHGSCSSSPVTV 237
Query: 801 VITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIA 622
V+TD+ P G E HFD+SGTA G MA+PG AD+LRA G L+I Y RVPC + G+++A
Sbjct: 238 VLTDECPDGPCLDEPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVA 417
Query: 621 FKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
FKVD G+NPYY VLIE+ED DGDLS+V+LME G
Sbjct: 418 FKVDAGSNPYYLAVLIEYEDGDGDLSSVELMENG 519
Score = 112 bits (239), Expect = 5e-024
Identities = 60/117 (51%), Positives = 65/117 (55%)
Frame = +2 / -3
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G P STL A P LHGT +Y I P ARS SA PG AM P AVPL SK + S +
Sbjct: 443 GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKWTGSSRHG 264
Query: 776 PPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW 946
P G SV T VTG E VHFT *Q PQP P PAAI+E NG + TA W
Sbjct: 263 PSGHSSVRTTVTGLDEQEPWPVHFTW*QEPQPLPSW*MDGPPAAIMEENGCWSTASW 93
Score = 30.9 bits (61), Expect(2) = 1e-067
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 492 NWGATWRLNNGRKLKAPF 439
+WGA WR+N+ L APF
Sbjct: 555 SWGAVWRVNSRPMLHAPF 608
>gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020B24f, mRNA sequence
Length = 679
Score = 244 bits (528), Expect(2) = 8e-067
Identities = 95/154 (61%), Positives = 119/154 (77%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NG GSDGGACGYQ AV ++PF SMIAAG +Y+ G+GCG+CY+VKCT + +CS PVT+
Sbjct: 148 NGAGSDGGACGYQDAVDQQPFSSMIAAGGPSIYQDGKGCGSCYQVKCTGHGSCSSSPVTV 327
Query: 801 VITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIA 622
V+TD+ P G E HFD+SGTA G MA+PG AD+LRA G L+I Y R PC + G+++A
Sbjct: 328 VLTDECPDGPCLDEPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRFPCNWRGMHVA 507
Query: 621 FKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
FKVD G+NPYY VLIE+ED DGDLS+V+LME G
Sbjct: 508 FKVDAGSNPYYLAVLIEYEDGDGDLSSVELMENG 609
Score = 110 bits (234), Expect = 2e-023
Identities = 59/117 (50%), Positives = 64/117 (54%)
Frame = +2 / -3
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G P STL A P LHG +Y I P ARS SA PG AM P AVPL SK + S +
Sbjct: 533 GLEPASTLKATCIPRQLHGNRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKWTGSSRHG 354
Query: 776 PPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW 946
P G SV T VTG E VHFT *Q PQP P PAAI+E NG + TA W
Sbjct: 353 PSGHSSVRTTVTGLDEQEPWPVHFTW*QEPQPLPSW*MDGPPAAIMEENGCWSTASW 183
Score = 30.4 bits (60), Expect(2) = 8e-067
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1 / +1
Query: 510 WTPMAHNWGATWRLNN 463
WT M +WGA WR N+
Sbjct: 625 WTKMDPSWGAVWRYNS 672
>gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015M21f, mRNA sequence
Length = 817
Score = 247 bits (533), Expect(2) = 4e-066
Identities = 96/154 (62%), Positives = 120/154 (77%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NG GSDGGACGYQ AV ++PF SMIAAG +Y+ G+GCG+CY+VKCT + +CS PVT+
Sbjct: 198 NGAGSDGGACGYQDAVDQQPFSSMIAAGGPSIYQDGKGCGSCYQVKCTGHGSCSSSPVTV 377
Query: 801 VITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIA 622
V+TD+ P G E HFD+SGTA G MA+PG AD+LRA G L+I Y RVPC + G+++A
Sbjct: 378 VLTDECPDGPCLDEPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVA 557
Query: 621 FKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
FKVD G+NPYY VLIE+ED DGDLS+V+LME G
Sbjct: 558 FKVDAGSNPYYLAVLIEYEDGDGDLSSVELMENG 659
Score = 112 bits (239), Expect = 5e-024
Identities = 60/117 (51%), Positives = 65/117 (55%)
Frame = +2 / -1
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G P STL A P LHGT +Y I P ARS SA PG AM P AVPL SK + S +
Sbjct: 583 GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKWTGSSRHG 404
Query: 776 PPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW 946
P G SV T VTG E VHFT *Q PQP P PAAI+E NG + TA W
Sbjct: 403 PSGHSSVRTTVTGLDEQEPWPVHFTW*QEPQPLPSW*MDGPPAAIMEENGCWSTASW 233
Score = 25.8 bits (50), Expect(2) = 4e-066
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1 / +1
Query: 489 WGATWRLNNGRKLKAPFGLRLTSDSRR 409
WGA WR N G PF + + S R
Sbjct: 697 WGAGWRSNFGPMWMRPFWVASPAASAR 777
>gb|BI958556.1|BI958556 HVSMEn0015J19f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015J19f,
mRNA sequence
Length = 649
Score = 150 bits (322), Expect(3) = 6e-066
Identities = 61/107 (57%), Positives = 69/107 (64%)
Frame = -1 / +3
Query: 1095 PAPVAARRNHTATPTPSPTVYGPGGWLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFD 916
P P + TPS G S +GDGSDGGACGYQ+AVG +PF
Sbjct: 144 PKPAMKVHKNHTAATPSSFAAYGSGGWSAGGATYYGAPDGDGSDGGACGYQSAVGNRPFS 323
Query: 915 SMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPGG 775
SMIAAG+ LYRGG+GCGACYEVKCT N ACSGQP T+VITD+ PGG
Sbjct: 324 SMIAAGNPSLYRGGKGCGACYEVKCTGNQACSGQPATVVITDECPGG 464
Score = 114 bits (243), Expect(3) = 6e-066
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = -1 / +3
Query: 765 GEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANP 595
GE HFDMSGT+MGAMA+PGMADKLRA G+++I Y+RVPCKY G+NIAFKVD G+NP
Sbjct: 477 GEAAHFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDXGSNP 647
Score = 94.1 bits (199), Expect(5) = 1e-046
Identities = 40/59 (67%), Positives = 44/59 (74%)
Frame = +2 / -1
Query: 773 SPPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW* 949
+PPG SV+T V GWPEHA L VH TS*QAPQP PPL S PAAII+ G FPTA+W*
Sbjct: 466 APPGHSSVMTTVAGWPEHAWLPVHLTS*QAPQPLPPL*SDGFPAAIIDEKGRFPTALW* 290
Score = 92.3 bits (195), Expect(5) = 1e-046
Identities = 42/62 (67%), Positives = 45/62 (72%)
Frame = +2 / -1
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G P STL AM P YLHGTLLY IL+ P ARSLSAMPG AMAPM VPLMSK + SP +
Sbjct: 646 GLEPWSTLKAMFMPGYLHGTLLYWILTIPLARSLSAMPGFAMAPMEVPLMSKWAASPRQA 467
Query: 776 PP 781
P
Sbjct: 466 AP 461
Score = 29.0 bits (57), Expect(5) = 1e-046
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1 / -3
Query: 1174 ELSGASNGAH*E*EDHHCSQ 1233
EL+GASNGAH + E + C++
Sbjct: 143 ELAGASNGAHKKREHNQCAK 84
Score = 26.3 bits (51), Expect(3) = 6e-066
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1 / +3
Query: 1197 PIACTRKLNKPKPK 1156
PIAC+RKL KP K
Sbjct: 120 PIACSRKLPKPAMK 161
Score = 24.0 bits (46), Expect(5) = 1e-046
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1 / -3
Query: 1018 PATGAVDSRRWRGCSCVVSSGGHRR 1092
PATGA+ +R G S VV H R
Sbjct: 224 PATGAISGKRRGGSSGVVLVDLHCR 150
Score = 22.1 bits (42), Expect(5) = 1e-046
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = +1 / -3
Query: 1246 KLRHCCC 1266
+ RHCCC
Sbjct: 65 RFRHCCC 45
>gb|BF257559.2|BF257559 HVSMEf0013D22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D22f, mRNA sequence
Length = 844
Score = 130 bits (279), Expect(3) = 2e-061
Identities = 48/73 (65%), Positives = 59/73 (80%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G GSDGGACGYQ+AVG++PF SMIAAG + ++ G+GCGACY+VKCT N ACSG+PVT+V
Sbjct: 251 GAGSDGGACGYQSAVGQRPFSSMIAAGGSSFFKSGKGCGACYQVKCTGNKACSGRPVTVV 430
Query: 798 ITDQSPGGLFPGE 760
ITD P G+ E
Sbjct: 431 ITDSCPDGICASE 469
Score = 122 bits (260), Expect(3) = 2e-061
Identities = 49/79 (62%), Positives = 59/79 (74%)
Frame = -1 / +2
Query: 756 EHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVL 577
+HFDMSGTA GAMA GMAD+LR+ G L+I Y RVPC+Y G+NI FKVD G NP+Y VL
Sbjct: 470 DHFDMSGTAFGAMANRGMADRLRSDGQLKIHYARVPCEYNGMNIVFKVDAGLNPFYLSVL 649
Query: 576 IEFEDDDGDLSAVDLMEAG 520
I + D DLS VD+M+ G
Sbjct: 650 IMYHARDRDLSDVDIMQGG 706
Score = 72.1 bits (151), Expect(2) = 1e-024
Identities = 34/63 (53%), Positives = 40/63 (63%)
Frame = +2 / -2
Query: 758 TSPGNSPPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPT 937
+S + P G SV+T VTG PE A L VH T * APQP P L PAAII+ NG +PT
Sbjct: 471 SSEAHMPSGQESVMTTVTGRPEQALLPVHLT**HAPQPLPLLKKEDPPAAIIDENGRWPT 292
Query: 938 AVW 946
A+W
Sbjct: 291 ALW 283
Score = 62.0 bits (129), Expect(2) = 1e-024
Identities = 32/58 (55%), Positives = 36/58 (62%)
Frame = +2 / -2
Query: 587 K*YGFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCST 760
+* G P STL M P+Y GTL ILS P R SA+P AMAP AVPLMSK S+
Sbjct: 639 R*NGLRPASTLKTMFIPLYSQGTLA*WILSCPSERRRSAIPRLAMAPKAVPLMSK*SS 466
Score = 23.1 bits (44), Expect(3) = 2e-061
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1 / +3
Query: 1095 PAPVAARRNHTATPTPSPTV 1036
P P AARR A P+ TV
Sbjct: 210 PGPPAARRGTGALTAPAATV 269
>gb|BF259315.3|BF259315 HVSMEf0019E07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019E07f, mRNA sequence
Length = 853
Score = 179 bits (385), Expect(5) = 7e-061
Identities = 67/90 (74%), Positives = 81/90 (90%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NGDG +GGACGYQTAVG +PF SMIAAGS+PL+ G+GCGACY+VKC++N+ACSG+PVT+
Sbjct: 297 NGDGGEGGACGYQTAVGHRPFSSMIAAGSSPLFMKGKGCGACYDVKCSSNSACSGKPVTV 476
Query: 801 VITDQSPGGLFPGEVEHFDMSGTAMGAMAR 712
VITD SPG L+PGE HFDMSGTA+GAMA+
Sbjct: 477 VITDLSPGNLYPGEPCHFDMSGTALGAMAK 566
Score = 107 bits (229), Expect(2) = 3e-025
Identities = 52/94 (55%), Positives = 61/94 (64%)
Frame = +2 / -1
Query: 668 ILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNSPPGDWSVITMVTGWPEHAALVVHF 847
+++ P A + AMAP AVPLMSK SPG PG SV+T VTG+PE A L+ H
Sbjct: 610 LMTPPGAELVRPCQAFAMAPKAVPLMSKWHGSPGYRLPGLKSVMTTVTGFPEQAELLEHL 431
Query: 848 TS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW* 949
TS* APQP P + G LPAAII+ NG PTAVW*
Sbjct: 430 TS*HAPQPLPFMNRGELPAAIIDENGRCPTAVW* 329
Score = 38.6 bits (78), Expect(5) = 7e-061
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1 / +3
Query: 684 GGVLRILYRRVPCKYTGVNIAFKVDQGANP 595
GGV+R+ Y++ PCKY NI FK A P
Sbjct: 597 GGVIRMXYKKRPCKYPWRNIGFKGGPRAQP 686
Score = 32.7 bits (65), Expect(5) = 7e-061
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1 / +3
Query: 1107 GSYKPAPVAARRNHTATPTPSPTVYGPG 1024
G +KPA V +N TAT S YG G
Sbjct: 177 GQHKPAAVKGHKNQTATNPSSSAAYGSG 260
Score = 31.3 bits (62), Expect(2) = 3e-025
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1 / -3
Query: 1165 GFVELSGASNGAH*E*EDHHCSQQQCPKLRHCCC 1266
GF EL+GASNGAH + E ++Q+ CC
Sbjct: 173 GFGELAGASNGAHKKREHQQRAKQR*GASVRHCC 72
Score = 30.4 bits (60), Expect(5) = 7e-061
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1 / +2
Query: 609 QGANPYYFDVLIEFEDDDGDL 547
+G P+Y LIEFED+ DL
Sbjct: 674 KGPTPFYLKTLIEFEDNHRDL 736
Score = 29.0 bits (57), Expect(5) = 7e-061
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2 / +1
Query: 1235 CWLQWWSSHS**APLLAPESSTNP 1164
C + W S *APLLAP SS P
Sbjct: 103 CLARCWCSRFL*APLLAPASSPKP 174
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 154 bits (330), Expect(2) = 6e-060
Identities = 62/101 (61%), Positives = 77/101 (76%)
Frame = -1 / +3
Query: 822 SGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCK 643
S PVT+V+TD+ P G E HFD+SGTA G MA+PG AD+LRA G L+I Y RVPC
Sbjct: 3 SSSPVTVVLTDECPDGPCLDEPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCN 182
Query: 642 YTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
+ G+++AFKVD G+NPYY VLIE+ED DGDLS+V+LME G
Sbjct: 183 WRGMHVAFKVDAGSNPYYLAVLIEYEDGDGDLSSVELMENG 305
Score = 98.2 bits (208), Expect(2) = 6e-060
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = -1 / +3
Query: 510 WTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
WT M +WGA WR N+G L APF +RLTS S + LVA+N IPA WKPG TYRS+VNY
Sbjct: 321 WTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 494
Score = 75.3 bits (158), Expect(2) = 2e-024
Identities = 40/76 (52%), Positives = 43/76 (56%)
Frame = +2 / -3
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G P STL A P LHGT +Y I P ARS SA PG AM P AVPL SK + S +
Sbjct: 229 GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKWTGSSRHG 50
Query: 776 PPGDWSVITMVTGWPE 823
P G SV T VTG E
Sbjct: 49 PSGHSSVRTTVTGLDE 2
Score = 57.9 bits (120), Expect(2) = 2e-024
Identities = 31/63 (49%), Positives = 33/63 (52%)
Frame = +1 / -2
Query: 331 SGVVDQGAVGLAGLPRGRDGVVGDEHPAGVGGEPEPERRFELPAVVEAPRGAPVVRHRSP 510
S VVD GAVG AGLP G D V E AG GGE + E R + V P AP H SP
Sbjct: 500 SSVVDDGAVGAAGLPAGGDDVTCHESLAGAGGEADREGRMQHWPGVVPPHRAPRPVHLSP 321
Query: 511 DAA 519
A
Sbjct: 320 AGA 312
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 149 bits (319), Expect(2) = 2e-058
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -1 / +1
Query: 810 VTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGV 631
VT+V+TD+ P G E HFD+SGTA G MA+PG AD+LRA G L+I Y RVPC + G+
Sbjct: 1 VTVVLTDECPDGPCLDEPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGM 180
Query: 630 NIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
++AFKVD G+NPYY VLIE+ED DGDLS+V+LME G
Sbjct: 181 HVAFKVDAGSNPYYLAVLIEYEDGDGDLSSVELMENG 291
Score = 98.2 bits (208), Expect(2) = 2e-058
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = -1 / +1
Query: 510 WTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
WT M +WGA WR N+G L APF +RLTS S + LVA+N IPA WKPG TYRS+VNY
Sbjct: 307 WTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 480
Score = 69.3 bits (145), Expect(2) = 1e-022
Identities = 37/71 (52%), Positives = 40/71 (56%)
Frame = +2 / -3
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G P STL A P LHGT +Y I P ARS SA PG AM P AVPL SK + S +
Sbjct: 215 GLEPASTLKATCIPRQLHGTRVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKWTGSSRHG 36
Query: 776 PPGDWSVITMV 808
P G SV T V
Sbjct: 35 PSGHSSVRTTV 3
Score = 57.9 bits (120), Expect(2) = 1e-022
Identities = 32/58 (55%), Positives = 35/58 (60%)
Frame = +2 / -3
Query: 338 *LTKER*VLPGFHAAGMALLATSTLRESEVSRSPNGALSFLPLLRRHVAPQLCAIGVQ 511
*LT ER*V PGF AGM LLAT L E EV R+ GA + P L H AP +I VQ
Sbjct: 479 *LTTER*VPPGFQPAGMTLLATRVLPELEVRRTEKGACNIGPELYLHTAPHDRSILVQ 306
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 112 bits (239), Expect(3) = 4e-058
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG+ D+LR G++ I + RVPC++ G+ I F V++ +NP
Sbjct: 142 YPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPV 321
Query: 591 YFDVLIEFEDDDGDLSAVDLMEA 523
YF VL+E+ED DGD+ VDLME+
Sbjct: 322 YFAVLVEYEDGDGDVVQVDLMES 390
Score = 86.8 bits (183), Expect(3) = 4e-058
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = -1 / +1
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLV 343
G G WT M +WG+ WRL++ +L+APF +R+ ++S + LVAN IPA W+P YRS V
Sbjct: 400 GGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFV 579
Query: 342 NY 337
Y
Sbjct: 580 QY 585
Score = 65.7 bits (137), Expect(3) = 4e-058
Identities = 20/46 (43%), Positives = 35/46 (76%)
Frame = -1 / +1
Query: 921 FDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
F SM + G+ PL++ G+GCG+CY+++C + +CSG+ T++ITD +
Sbjct: 1 FASMTSCGNQPLFKDGKGCGSCYKIRCRKDQSCSGRTETVIITDMN 138
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 136 bits (291), Expect(4) = 3e-056
Identities = 50/88 (56%), Positives = 68/88 (77%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 324 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 503
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSGVW 508
YF VL+E+ED DGDL VDLMEA SG W
Sbjct: 504 YFAVLVEYEDGDGDLVQVDLMEANSGTW 587
Score = 76.2 bits (160), Expect(4) = 3e-056
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +3
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 180 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 320
Score = 41.4 bits (84), Expect(4) = 3e-056
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1 / +1
Query: 507 TPMAHNWGATWRLNNGRKLKAPFGL 433
TPM +WG+ WR+ +G +L+APF +
Sbjct: 589 TPMRESWGSIWRVESGHRLQAPFSM 663
Score = 22.6 bits (43), Expect(4) = 3e-056
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 129 GPMDDGGACGFK 164
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 158 bits (339), Expect(3) = 2e-055
Identities = 60/130 (46%), Positives = 86/130 (66%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 307 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 486
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSR 412
YF VL+E+ D DGD+ VDLMEA S WTPM +WG+ RL++G + P L ++
Sbjct: 487 YFAVLVEYXDGDGDMVQVDLMEANSCTWTPMRESWGSILRLDSGHGWRPPLSFALXNEGG 666
Query: 411 RVLVANNAIP 382
R L P
Sbjct: 667 RELGGRQGDP 696
Score = 74.8 bits (157), Expect(3) = 2e-055
Identities = 23/47 (48%), Positives = 36/47 (76%)
Frame = -1 / +1
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 163 PFSSMGGGGNXPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 303
Score = 22.6 bits (43), Expect(3) = 2e-055
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 112 GPMDDGGACGFK 147
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 214 bits (462), Expect = 8e-055
Identities = 77/139 (55%), Positives = 108/139 (77%)
Frame = -1 / +2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP YF VL+
Sbjct: 5 HFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYFAVLV 184
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVAN 394
E+ED DGD+ VDLMEA SG WTPM +WG+ WRL++G +L+APF +R+T++S + LVA+
Sbjct: 185 EYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVAD 364
Query: 393 NAIPAAWKPGKTYRSLVNY 337
IPA W P YRS+V Y
Sbjct: 365 KVIPANWAPSTFYRSIVQY 421
>gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081A10f, mRNA sequence
Length = 749
Score = 193 bits (415), Expect(2) = 4e-054
Identities = 74/129 (57%), Positives = 95/129 (73%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NG GSDGGACGYQ AV ++PF SMIAAG +Y+ G+GCG+CY+VKCT + +CS PVT+
Sbjct: 195 NGAGSDGGACGYQDAVDQQPFSSMIAAGGPSIYQDGKGCGSCYQVKCTGHGSCSSSPVTV 374
Query: 801 VITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIA 622
V+TD+ P G E HFD+SGTA G MA+PG AD+LRA G L+I Y VPC + G+++A
Sbjct: 375 VLTDECPDGPCLDEPVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTPVPCNWRGMHVA 554
Query: 621 FKVDQGANP 595
+VD G P
Sbjct: 555 LQVDAGLQP 581
Score = 106 bits (227), Expect = 2e-022
Identities = 59/117 (50%), Positives = 65/117 (55%)
Frame = +2 / -2
Query: 596 GFAP*STLNAMLTPVYLHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNS 775
G +P ST A P LHGT +Y I P ARS SA PG AM P AVPL SK + S +
Sbjct: 580 G*SPAST*RATCIPRQLHGTGVYWIWRRPAARSWSAWPGFAMPPNAVPLRSKWTGSSRHG 401
Query: 776 PPGDWSVITMVTGWPEHAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW 946
P G SV T VTG E VHFT *Q PQP P PAAI+E NG + TA W
Sbjct: 400 PSGHSSVRTTVTGLDEQEPWPVHFTW*QEPQPLPSW*MDGPPAAIMEENGCWSTASW 230
Score = 39.6 bits (80), Expect(2) = 4e-054
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1 / +1
Query: 621 FKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
F+ G NPYY I++ED DG+ S+ +LME G
Sbjct: 556 FRWTPGFNPYYLAGAIQYEDGDGEPSSGELMENG 657
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 110 bits (235), Expect(4) = 2e-053
Identities = 39/83 (46%), Positives = 60/83 (72%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+ G ++LR G++ + +RRVPC+Y G+ + F V G+NPY
Sbjct: 284 YPVSRFHFDLSGTAFGAMAKDGRNEELRHAGIIDMQFRRVPCQYPGLTVTFHVQHGSNPY 463
Query: 591 YFDVLIEFEDDDGDLSAVDLMEA 523
Y +L+E+E+ DGD+ VD+M++
Sbjct: 464 YLAILVEYENGDGDVDQVDMMQS 532
Score = 74.4 bits (156), Expect(4) = 2e-053
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = -1 / +2
Query: 525 AGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSL 346
A +G W PM +WG+ WR++ R ++ PF LR+T++S + LVA+ P W+P + Y S
Sbjct: 566 APTGEWVPMTESWGSIWRMDTRRPMQGPFSLRITNESGKTLVADQVNPGDWEPNEIYSSF 745
Query: 345 VNYP*KEKYRQVDGVY 298
+ * + +Y
Sbjct: 746 IQVD*PFSLTWIHPIY 793
Score = 54.7 bits (113), Expect(4) = 2e-053
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1 / +2
Query: 1023 GWLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVK 844
GWL D G V PF +M + G+ PL++ G+GCG+CY+++
Sbjct: 35 GWLDARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIR 214
Query: 843 CTT 835
C +
Sbjct: 215 CVS 223
Score = 27.2 bits (53), Expect(4) = 2e-053
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +2
Query: 828 ACSGQPVTIVITDQS 784
ACSG P T++ITD +
Sbjct: 236 ACSGVPETVIITDMN 280
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 106 bits (227), Expect(3) = 1e-052
Identities = 39/86 (45%), Positives = 60/86 (69%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG D+LR G++ I + RV C++ G+ + F V++G+N
Sbjct: 259 YPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAV 438
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSG 514
Y +L+E+E+ DGD+ VDLME+G G
Sbjct: 439 YMAILVEYENGDGDVVQVDLMESGRG 516
Score = 74.8 bits (157), Expect(3) = 1e-052
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -1 / +1
Query: 936 VGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
V + PF +M + G+ PL++ G+GCGACY++KCT + ACSG+ T++ITD +
Sbjct: 103 VNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMN 255
Score = 64.8 bits (135), Expect(3) = 1e-052
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = -1 / +1
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIP 382
G G WT M +WG+ WRL++ +L+APF +R+ ++S + LVA N IP
Sbjct: 523 GGGRWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIP 663
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 106 bits (227), Expect(3) = 3e-052
Identities = 39/86 (45%), Positives = 60/86 (69%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG D+LR G++ I + RV C++ G+ + F V++G+N
Sbjct: 203 YPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAV 382
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSG 514
Y +L+E+E+ DGD+ VDLME+G G
Sbjct: 383 YMAILVEYENGDGDVVQVDLMESGRG 460
Score = 74.8 bits (157), Expect(3) = 3e-052
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -1 / +2
Query: 936 VGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
V + PF +M + G+ PL++ G+GCGACY++KCT + ACSG+ T++ITD +
Sbjct: 47 VNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMN 199
Score = 63.4 bits (132), Expect(3) = 3e-052
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = -1 / +2
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRS 349
G G WT M +WG WRL++ +L+APF +R+ ++S + LVA IP +P Y S
Sbjct: 467 GGGRWTRMRESWGFIWRLDSNHRLQAPFSIRIRNESGQTLVAR*VIPKKGRPNTLYCS 640
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 106 bits (227), Expect(4) = 6e-047
Identities = 39/86 (45%), Positives = 60/86 (69%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG D+LR G++ I + RV C++ G+ + F V++G+N
Sbjct: 224 YPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAV 403
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSG 514
Y +L+E+E+ DGD+ VDLME+G G
Sbjct: 404 YMAILVEYENGDGDVVQVDLMESGRG 481
Score = 74.8 bits (157), Expect(4) = 6e-047
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -1 / +2
Query: 936 VGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
V + PF +M + G+ PL++ G+GCGACY++KCT + ACSG+ T++ITD +
Sbjct: 68 VNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMN 220
Score = 39.1 bits (79), Expect(4) = 6e-047
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -1 / +3
Query: 477 WRLNNGRKLKAPFGLRLTSDSRRVLVANN 391
WRL++ +L+APF +R+ ++S + LVA N
Sbjct: 534 WRLDSNHRLQAPFSIRIRNESGKTLVARN 620
Score = 24.0 bits (46), Expect(4) = 6e-047
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1 / +2
Query: 522 GSGVWTPMAHNWGA 481
G G WT M +WG+
Sbjct: 488 GGGRWTRMRESWGS 529
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 77.6 bits (163), Expect(4) = 2e-046
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = -1 / +3
Query: 627 IAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLK 448
+ F V+Q +NP YF VL E+ED DGD+ A G WTPM +WG+ W L+ G +L+
Sbjct: 489 VTFHVEQXSNPVYFAVLGEYEDGDGDVVQGGPNGANFGTWTPMRESWGSIWGLDFGHRLQ 668
Query: 447 APF 439
APF
Sbjct: 669 APF 677
Score = 76.2 bits (160), Expect(4) = 2e-046
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +1
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 202 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 342
Score = 66.6 bits (139), Expect(4) = 2e-046
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKY 640
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++
Sbjct: 346 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEF 477
Score = 22.6 bits (43), Expect(4) = 2e-046
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 151 GPMDDGGACGFK 186
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 135 bits (289), Expect(2) = 3e-046
Identities = 51/110 (46%), Positives = 74/110 (67%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GA+A+ G+ +KLR G++ I +RRVPC + G+ I F V +G+N
Sbjct: 429 YPVAQYHFDLSGTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAV 608
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAP 442
Y VLIE+ED DGD+ VD+ A SG W M +WG+ WR+++ +L+ P
Sbjct: 609 YLAVLIEYEDMDGDVIQVDMKGANSGSWMAMRESWGSIWRMDSNHRLQGP 758
Score = 71.2 bits (149), Expect(2) = 3e-046
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = -1 / +3
Query: 1020 WLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKC 841
WL D G V + PF SM + G+ PL++ G+GCG+CY+++C
Sbjct: 189 WLPARATWYGAPNGAGPDDNGGACGFKHVNQYPFSSMTSCGNQPLFKDGKGCGSCYQIRC 368
Query: 840 TTNAACSGQPVTIVITDQS 784
+ + +CSG T++ITD +
Sbjct: 369 SGDRSCSGNIETVMITDMN 425
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 101 bits (215), Expect(3) = 6e-046
Identities = 37/82 (45%), Positives = 57/82 (69%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG D+LR G++ I + RV C++ G+ + F V++G+N
Sbjct: 376 YPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAV 555
Query: 591 YFDVLIEFEDDDGDLSAVDLME 526
Y +L+E+E+ DGD+ VDLME
Sbjct: 556 YMAILVEYENGDGDVVQVDLME 621
Score = 74.8 bits (157), Expect(3) = 6e-046
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -1 / +1
Query: 936 VGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
V + PF +M + G+ PL++ G+GCGACY++KCT + ACSG+ T++ITD +
Sbjct: 220 VNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMN 372
Score = 47.3 bits (97), Expect(3) = 6e-046
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -1 / +3
Query: 525 AGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANN 391
A +G WT M +WG+ W L++ +L+ P +R+ ++S + L A N
Sbjct: 639 AAAGRWTRMPESWGSIWGLDSXNRLQXPXSIRIRNESGKKLXARN 773
>gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021M10f, mRNA sequence
Length = 609
Score = 128 bits (274), Expect(3) = 2e-045
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = -1 / +1
Query: 783 PGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQG 604
P G E HFD+SGTA G MA+PG AD+L AGG L+I Y RVPC + G++ FKVD G
Sbjct: 1 PDGPCLDEPVHFDLSGTAFGGMAKPGQADQLCAGGRLQIQYTRVPCNWRGMHRTFKVDAG 180
Query: 603 ANPYYFDVLIEFEDDDGDLSAVDLMEAG 520
NPYY VLIE+ED DGDLS+V+LME G
Sbjct: 181 FNPYYLAVLIEYEDGDGDLSSVELMENG 264
Score = 71.6 bits (150), Expect(3) = 2e-045
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = -1 / +1
Query: 510 WTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKP 367
WT M +WGA WR N+G L APF +RLTS S + LVA+N IPA KP
Sbjct: 280 WTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAG*KP 423
Score = 22.1 bits (42), Expect(3) = 2e-045
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1 / +3
Query: 384 PAAWKPGKTYRSLVNY 337
P K TYRS+VNY
Sbjct: 405 PRRLKARGTYRSVVNY 452
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 120 bits (257), Expect(3) = 1e-044
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 382 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 561
Query: 591 YFDVLIEFEDDDGDLSAVDLMEA 523
YF VL+E+ D DG+L VDLMEA
Sbjct: 562 YFPVLVEY*DGDGNLVQVDLMEA 630
Score = 76.2 bits (160), Expect(3) = 1e-044
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +1
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 238 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 378
Score = 22.6 bits (43), Expect(3) = 1e-044
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 187 GPMDDGGACGFK 222
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 112 bits (239), Expect(2) = 4e-044
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG+ D+LR G++ I + RVPC++ G+ I F V++ +NP
Sbjct: 14 YPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPV 193
Query: 591 YFDVLIEFEDDDGDLSAVDLMEA 523
YF VL+E+ED DGD+ VDLME+
Sbjct: 194 YFAVLVEYEDGDGDVVQVDLMES 262
Score = 86.8 bits (183), Expect(2) = 4e-044
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = -1 / +2
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLV 343
G G WT M +WG+ WRL++ +L+APF +R+ ++S + LVAN IPA W+P YRS V
Sbjct: 272 GGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFV 451
Query: 342 NY 337
Y
Sbjct: 452 QY 457
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 106 bits (227), Expect(3) = 5e-044
Identities = 39/86 (45%), Positives = 60/86 (69%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG D+LR G++ I + RV C++ G+ + F V++G+N
Sbjct: 64 YPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAV 243
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSG 514
Y +L+E+E+ DGD+ VDLME+G G
Sbjct: 244 YMAILVEYENGDGDVVQVDLMESGRG 321
Score = 84.5 bits (178), Expect(3) = 5e-044
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = -1 / +1
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLV 343
G G WT M +WG+ WRL++ +L+APF +R+ ++S + LVA N IP W+P YRS+V
Sbjct: 328 GGGRWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIV 507
Query: 342 NY 337
Y
Sbjct: 508 QY 513
Score = 25.8 bits (50), Expect(3) = 5e-044
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1 / +1
Query: 840 TTNAACSGQPVTIVITDQS 784
T + ACSG+ T++ITD +
Sbjct: 4 TKHKACSGRQETVMITDMN 60
>gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021D09f, mRNA sequence
Length = 864
Score = 162 bits (349), Expect(2) = 2e-043
Identities = 65/118 (55%), Positives = 83/118 (70%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
NG GSDGGACGYQ AV ++PF SMIAAG +Y+ G+GCG+CY+VKCT + +CS PVT+
Sbjct: 198 NGAGSDGGACGYQDAVDQQPFSSMIAAGGPSIYQDGKGCGSCYQVKCTGHGSCSSSPVTV 377
Query: 801 VITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVN 628
V+TD+ P G E HFD+SGTA G M + G AD+L A G L I VPC + G++
Sbjct: 378 VLTDECPDGPCLDEPVHFDLSGTAFGGMVKSGQADQLCAVGRLPIPDTLVPCNWRGMH 551
Score = 34.5 bits (69), Expect(2) = 2e-043
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -1 / +2
Query: 606 GANPYYFDVLIEFEDDDGDLSAVDLM 529
G NPYY VLI ED DG L+ LM
Sbjct: 575 GFNPYYLAVLIGSEDGDGQLACGGLM 652
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 116 bits (248), Expect(3) = 2e-043
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 420 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 599
Query: 591 YFDVLIEFEDDDGDLSAVD 535
YF VL+E+ED DGD VD
Sbjct: 600 YFAVLVEYEDGDGDXVXVD 656
Score = 76.2 bits (160), Expect(3) = 2e-043
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +3
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 276 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 416
Score = 22.6 bits (43), Expect(3) = 2e-043
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 225 GPMDDGGACGFK 260
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 176 bits (378), Expect = 3e-043
Identities = 67/134 (50%), Positives = 93/134 (69%)
Frame = -1 / +1
Query: 738 GTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDD 559
GTA GA+A+ G+ +KLR G++ I +RRVPC + G+ I F V +G+N Y VLIE+ED
Sbjct: 1 GTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDM 180
Query: 558 DGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPA 379
DGD+ VD+ EA SG W M +WG+ WR+++ +L+ PF +R+TSDS + LVANN IPA
Sbjct: 181 DGDVIQVDMKEANSGSWMAMRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPA 360
Query: 378 AWKPGKTYRSLVNY 337
W+P YRS V +
Sbjct: 361 NWRPNTDYRSFVQF 402
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 111 bits (237), Expect(3) = 6e-042
Identities = 41/81 (50%), Positives = 59/81 (72%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + V+QG+NP
Sbjct: 434 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTXHVEQGSNPV 613
Query: 591 YFDVLIEFEDDDGDLSAVDLM 529
YF VL+E+ D D D VDLM
Sbjct: 614 YFXVLVEYXDGDXDXVQVDLM 676
Score = 76.2 bits (160), Expect(3) = 6e-042
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +2
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 290 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 430
Score = 22.6 bits (43), Expect(3) = 6e-042
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 239 GPMDDGGACGFK 274
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 111 bits (238), Expect(2) = 4e-041
Identities = 38/80 (47%), Positives = 61/80 (76%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGTA GAMA+ G D+LR G++ + ++RVPC+Y G+ + F V++G+NP+Y +L+
Sbjct: 3 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 182
Query: 573 EFEDDDGDLSAVDLMEAGSG 514
E+E+ DGD+ +D+ME+ G
Sbjct: 183 EYENGDGDVKQLDIMESRPG 242
Score = 77.1 bits (162), Expect(2) = 4e-041
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = -1 / +3
Query: 519 SGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLVN 340
+G W PM +WG+ WR++ + PF LR+T++S + LVA+ I WKP KTY SLV
Sbjct: 270 TGQWVPMKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIXGDWKPNKTYSSLVQ 449
Query: 339 Y 337
+
Sbjct: 450 F 452
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 106 bits (227), Expect(3) = 1e-040
Identities = 39/86 (45%), Positives = 60/86 (69%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG D+LR G++ I + RV C++ G+ + F V++G+N
Sbjct: 307 YPVAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAV 486
Query: 591 YFDVLIEFEDDDGDLSAVDLMEAGSG 514
Y +L+E+E+ DGD+ VDLME+G G
Sbjct: 487 YMAILVEYENGDGDVVQVDLMESGRG 564
Score = 74.8 bits (157), Expect(3) = 1e-040
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -1 / +1
Query: 936 VGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
V + PF +M + G+ PL++ G+GCGACY++KCT + ACSG+ T++ITD +
Sbjct: 151 VNRYPFMAMTSCGNQPLFKDGKGCGACYKIKCTKHKACSGRQETVMITDMN 303
Score = 24.0 bits (46), Expect(3) = 1e-040
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1 / +1
Query: 522 GSGVWTPMAHNWGA 481
G G WT M +WG+
Sbjct: 571 GGGRWTRMRESWGS 612
>gb|BU983370.1|BU983370 HA29H20r HA Hordeum vulgare subsp. vulgare cDNA clone HA29H20
5-PRIME, mRNA sequence
Length = 485
Score = 166 bits (357), Expect = 3e-040
Identities = 62/113 (54%), Positives = 79/113 (69%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIV 799
G G+DGGACGYQ V + PF +M+ A +++ G+GCGACY+V+CT + ACSG PVT+V
Sbjct: 143 GAGTDGGACGYQDDVEQPPFSAMVTAAGPSIFKNGKGCGACYQVRCTNHGACSGFPVTVV 322
Query: 798 ITDQSPGGLFPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKY 640
+TDQ PGG E HFD+ G A GAMA+PG AD LR G LR+ Y RV C +
Sbjct: 323 VTDQCPGGPCLAEAAHFDLGGKAFGAMAKPGQADNLRNAGRLRVQYNRVRCNW 481
Score = 102 bits (217), Expect = 5e-021
Identities = 52/101 (51%), Positives = 57/101 (56%)
Frame = +2 / -3
Query: 644 LHGTLLYRILSTPPARSLSAMPGRAMAPMAVPLMSKCSTSPGNSPPGDWSVITMVTGWPE 823
LH T LY LS P R LSA PG AMAP A P SK + S + PPG WSV T VTG PE
Sbjct: 477 LHRTRLYWTLSLPALRRLSACPGLAMAPKAFPPRSKWAASARHGPPGHWSVTTTVTGNPE 298
Query: 824 HAALVVHFTS*QAPQPSPPLYSGVLPAAIIESNGFFPTAVW 946
A +VH T *QAPQP P L A + NG T+ W
Sbjct: 297 QAPWLVHLT**QAPQPLPFLKIEGPAAVTMAENGGCSTSSW 175
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 105 bits (224), Expect(3) = 3e-040
Identities = 37/70 (52%), Positives = 55/70 (78%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 442 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 621
Query: 591 YFDVLIEFED 562
YF VL+E+ED
Sbjct: 622 YFAVLVEYED 651
Score = 76.2 bits (160), Expect(3) = 3e-040
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +1
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 298 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 438
Score = 22.6 bits (43), Expect(3) = 3e-040
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +1
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 247 GPMDDGGACGFK 282
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 111 bits (238), Expect(4) = 9e-040
Identities = 38/80 (47%), Positives = 61/80 (76%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGTA GAMA+ G D+LR G++ + ++RVPC+Y G+ + F V++G+NP+Y +L+
Sbjct: 384 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 563
Query: 573 EFEDDDGDLSAVDLMEAGSG 514
E+E+ DGD+ +D+ME+ G
Sbjct: 564 EYENGDGDVKQLDIMESRPG 623
Score = 52.8 bits (109), Expect(4) = 9e-040
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1 / +3
Query: 1020 WLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKC 841
WL T D G V PF SM + G+ PL++ G+GCG+CY+++C
Sbjct: 120 WLDAKATWYGRPTGAGPDDNGGACGFKNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 299
Score = 28.6 bits (56), Expect(4) = 9e-040
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1 / +3
Query: 519 SGVWTPMAHNWGATWRL 469
+G W PM +W + WR+
Sbjct: 651 TGQWVPMKESWXSIWRM 701
Score = 27.2 bits (53), Expect(4) = 9e-040
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 828 ACSGQPVTIVITDQS 784
ACSG P T++ITD +
Sbjct: 318 ACSGVPKTVIITDMN 362
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 111 bits (238), Expect(3) = 3e-039
Identities = 40/83 (48%), Positives = 61/83 (73%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+ G D+LR G++ + ++RVPC+Y G+ + F+V G+NP
Sbjct: 108 YPVSRYHFDLSGTAFGAMAKYGRNDELRHAGIIDMQFKRVPCQYPGLTVTFRVQHGSNPN 287
Query: 591 YFDVLIEFEDDDGDLSAVDLMEA 523
Y +L+E+ED DGD++ VD+ME+
Sbjct: 288 YLAILVEYEDGDGDVAQVDIMES 356
Score = 51.9 bits (107), Expect(3) = 3e-039
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -1 / +3
Query: 525 AGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLT 424
A +G WTPM +WG+ WRL+ R L+ PF LR+T
Sbjct: 372 APTGYWTPMRESWGSIWRLDRLRPLQGPFSLRVT 473
Score = 37.3 bits (75), Expect(3) = 3e-039
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1 / +3
Query: 864 GACYEVKCTTNAACSGQPVTIVITDQS 784
GA + +C + ACSG P T++ITD +
Sbjct: 24 GAAHATRCVAHRACSGVPETVIITDMN 104
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 108 bits (231), Expect(4) = 7e-039
Identities = 37/80 (46%), Positives = 60/80 (75%)
Frame = -1 / +3
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGTA GAMA+ G D+LR G++ + ++RVPC+Y + + F V++G+NP+Y +L+
Sbjct: 390 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPXLTVTFHVEEGSNPFYMAILV 569
Query: 573 EFEDDDGDLSAVDLMEAGSG 514
E+E+ DGD+ +D+ME+ G
Sbjct: 570 EYENGDGDVKQLDIMESRPG 629
Score = 52.8 bits (109), Expect(4) = 7e-039
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1 / +3
Query: 1020 WLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKC 841
WL T D G V PF SM + G+ PL++ G+GCG+CY+++C
Sbjct: 126 WLDAKATWYGRPTGAGPDDNGGACGFKNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 305
Score = 28.6 bits (56), Expect(4) = 7e-039
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1 / +3
Query: 519 SGVWTPMAHNWGATW 475
+G W PM +WG+ W
Sbjct: 657 TGQWVPMKESWGSIW 701
Score = 27.2 bits (53), Expect(4) = 7e-039
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 828 ACSGQPVTIVITDQS 784
ACSG P T++ITD +
Sbjct: 324 ACSGVPKTVIITDMN 368
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 99.1 bits (210), Expect(3) = 3e-038
Identities = 35/67 (52%), Positives = 52/67 (77%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 429 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 608
Query: 591 YFDVLIE 571
YF VL+E
Sbjct: 609 YFAVLVE 629
Score = 76.2 bits (160), Expect(3) = 3e-038
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +3
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 285 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 425
Score = 22.6 bits (43), Expect(3) = 3e-038
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 234 GPMDDGGACGFK 269
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 76.2 bits (160), Expect(4) = 6e-038
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +2
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 290 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 430
Score = 69.3 bits (145), Expect(4) = 6e-038
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGV 631
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+
Sbjct: 434 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGL 574
Score = 46.0 bits (94), Expect(4) = 6e-038
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -1 / +1
Query: 627 IAFKVDQGANPYYFDVLIEFEDDDGDLSAVD 535
+ F V+QG+NP YF VL+E++D DG + VD
Sbjct: 577 VTFHVEQGSNPVYFAVLVEYQDGDGHVVQVD 669
Score = 22.6 bits (43), Expect(4) = 6e-038
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 239 GPMDDGGACGFK 274
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 157 bits (338), Expect = 1e-037
Identities = 60/120 (50%), Positives = 82/120 (68%)
Frame = -1 / -2
Query: 696 KLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAGS 517
KLR G++ I +RRVPC + G+ I F V +G+N Y VLIE+ED DGD+ VD+ EA S
Sbjct: 703 KLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANS 524
Query: 516 GVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
G W M +WG+ WR+++ +L+ PF +R+TSDS + LVANN IPA W+P YRS V +
Sbjct: 523 GSWMAMRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 344
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 113 bits (242), Expect(3) = 4e-037
Identities = 39/81 (48%), Positives = 62/81 (76%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGTA GAMA+ G D+LR G++ + ++RVPC+Y G+ + F V++G+NP+Y +L+
Sbjct: 337 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 516
Query: 573 EFEDDDGDLSAVDLMEAGSGV 511
E+E+ DGD+ +D+ME+ GV
Sbjct: 517 EYENGDGDVKQLDIMESRPGV 579
Score = 52.8 bits (109), Expect(3) = 4e-037
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1 / +1
Query: 1020 WLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKC 841
WL T D G V PF SM + G+ PL++ G+GCG+CY+++C
Sbjct: 73 WLDAKATWYGRPTGAGPDDNGGACGFKNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 252
Score = 27.2 bits (53), Expect(3) = 4e-037
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +1
Query: 828 ACSGQPVTIVITDQS 784
ACSG P T++ITD +
Sbjct: 271 ACSGVPKTVIITDMN 315
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 94.1 bits (199), Expect(2) = 6e-037
Identities = 31/72 (43%), Positives = 54/72 (75%)
Frame = -1 / -2
Query: 729 MGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGD 550
+GAMA+ G D+LR G++ + ++RVPC+Y G+ + F V++G+NP+Y +L+E+E+ DGD
Sbjct: 601 LGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYENGDGD 422
Query: 549 LSAVDLMEAGSG 514
+ +D+ME+ G
Sbjct: 421 VKQLDIMESRPG 386
Score = 81.3 bits (171), Expect(2) = 6e-037
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = -1 / -2
Query: 519 SGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLVN 340
+G W PM +WG+ WR++ + PF LR+T++S + LVA+ IP WKP KTY SLV
Sbjct: 358 TGQWVPMKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIPGDWKPNKTYSSLVQ 179
Query: 339 Y 337
+
Sbjct: 178 F 176
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K03f, mRNA sequence
Length = 679
Score = 93.6 bits (198), Expect(3) = 1e-036
Identities = 33/69 (47%), Positives = 51/69 (73%)
Frame = -1 / +2
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KL G++ I ++RVPC++ G+ + F V+QG+NP
Sbjct: 428 YPVAKYHFDLSGTAFGAMAKPGLSEKLPHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPV 607
Query: 591 YFDVLIEFE 565
YF L+ F+
Sbjct: 608 YFPRLVGFQ 634
Score = 76.2 bits (160), Expect(3) = 1e-036
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +2
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 284 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 424
Score = 22.6 bits (43), Expect(3) = 1e-036
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +2
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 233 GPMDDGGACGFK 268
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 86.8 bits (183), Expect(3) = 1e-036
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = -1 / +1
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLV 343
G G WT M +WG+ WRL++ +L+APF +R+ ++S + LVAN IPA W+P YRS V
Sbjct: 232 GGGKWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFV 411
Query: 342 NY 337
Y
Sbjct: 412 QY 417
Score = 68.4 bits (143), Expect(3) = 1e-036
Identities = 25/45 (55%), Positives = 35/45 (77%)
Frame = -1 / +1
Query: 657 RVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEA 523
RVPC++ G+ I F V++ +NP YF VL+E+ED DGD+ VDLME+
Sbjct: 88 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMES 222
Score = 37.3 bits (75), Expect(3) = 1e-036
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -1 / +2
Query: 744 MSGTAMGAMARPGMADKLRAGGVLRI 667
+SGTA G +A+PG+ D+LR G++ I
Sbjct: 2 LSGTAFGRLAKPGLNDRLRHSGIIDI 79
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 112 bits (239), Expect(2) = 1e-036
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = -1 / +1
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA G +A+PG+ D+LR G++ I + RVPC++ G+ I F V++ +NP
Sbjct: 25 YPVAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPV 204
Query: 591 YFDVLIEFEDDDGDLSAVDLMEA 523
YF VL+E+ED DGD+ VDLME+
Sbjct: 205 YFAVLVEYEDGDGDVVQVDLMES 273
Score = 61.6 bits (128), Expect(2) = 1e-036
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -1 / +1
Query: 522 GSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTSDSRRVLVANNAIPAAWKPGKTYRSLV 343
G G WT M +WG+ WRLN +L+APF +++ L + +P W+PG R +
Sbjct: 283 GGGKWTRMRESWGSVWRLNCNHRLQAPFCIQVRDKCGETLGGSMGVPGRWRPGTLCRCVE 462
Query: 342 NYP*KEKYRQVDGVYCASG 286
K R + G SG
Sbjct: 463 QTGGKA*ARGLGGRCAGSG 519
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 111 bits (238), Expect(3) = 1e-036
Identities = 38/80 (47%), Positives = 61/80 (76%)
Frame = -1 / +2
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGTA GAMA+ G D+LR G++ + ++RVPC+Y G+ + F V++G+NP+Y +L+
Sbjct: 383 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 562
Query: 573 EFEDDDGDLSAVDLMEAGSG 514
E+E+ DGD+ +D+ME+ G
Sbjct: 563 EYENGDGDVKQLDIMESRPG 622
Score = 52.8 bits (109), Expect(3) = 1e-036
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1 / +1
Query: 1020 WLSXXXXXXXXXTNGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKC 841
WL T D G V PF SM + G+ PL++ G+GCG+CY+++C
Sbjct: 118 WLDAKATWYGRPTGAGPDDNGGACGFKNVNLPPFSSMTSCGNQPLFKDGKGCGSCYQIRC 297
Score = 27.2 bits (53), Expect(3) = 1e-036
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +2
Query: 828 ACSGQPVTIVITDQS 784
ACSG P T++ITD +
Sbjct: 317 ACSGVPKTVIITDMN 361
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 93.6 bits (198), Expect(3) = 1e-036
Identities = 33/64 (51%), Positives = 49/64 (76%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPY 592
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+N+ F V+ G+NP
Sbjct: 423 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLNVTFHVEXGSNPV 602
Query: 591 YFDV 580
YF V
Sbjct: 603 YFAV 614
Score = 76.2 bits (160), Expect(3) = 1e-036
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +3
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 279 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 419
Score = 22.1 bits (42), Expect(3) = 1e-036
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1 / +3
Query: 978 GDGSDGGACGY 946
G DGGACG+
Sbjct: 228 GPMDDGGACGF 260
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 76.2 bits (160), Expect(4) = 3e-036
Identities = 23/47 (48%), Positives = 37/47 (78%)
Frame = -1 / +3
Query: 924 PFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQS 784
PF SM + G+ P+++ G+GCG+CY+++CT + +CSG P T+VITD +
Sbjct: 276 PFSSMTSCGNEPIFKDGKGCGSCYQIRCTNDQSCSGNPETVVITDMN 416
Score = 69.3 bits (145), Expect(4) = 3e-036
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = -1 / +3
Query: 771 FPGEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGV 631
+P HFD+SGTA GAMA+PG+++KLR G++ I ++RVPC++ G+
Sbjct: 420 YPVAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGL 560
Score = 40.5 bits (82), Expect(4) = 3e-036
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -1 / +2
Query: 627 IAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEA 523
+ V+QG NP YF VL+E+ED D L VD +A
Sbjct: 563 VXLHVEQGYNPVYFTVLVEYEDRDRYLVHVDSWKA 667
Score = 22.6 bits (43), Expect(4) = 3e-036
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 978 GDGSDGGACGYQ 943
G DGGACG++
Sbjct: 225 GPMDDGGACGFK 260
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 589,660,885
Number of Sequences: 312970
Number of extensions: 9765101
Number of successful extensions: 120112
Number of sequences better than 1.0e-020: 172
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 16632726062
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)