TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA li... 219 1e-056
gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA li... 219 1e-056
gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA li... 219 1e-056
gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA li... 219 1e-056
gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA li... 219 1e-056
gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA li... 219 1e-056
gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. v... 219 1e-056
gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA li... 214 3e-055
gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, n... 185 2e-046
gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. v... 182 1e-045
gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed D... 178 3e-044
gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA li... 171 2e-042
gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA li... 164 5e-040
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 157 4e-039
gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed D... 144 6e-034
gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA li... 140 7e-033
gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa... 140 7e-033
gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa... 140 7e-033
gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no... 140 7e-033
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 140 7e-033
gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa... 136 9e-032
gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed D... 132 2e-030
gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA li... 129 1e-029
gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA li... 129 1e-029
gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA li... 129 1e-029
gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. v... 126 1e-028
gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA li... 124 5e-028
gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA li... 124 5e-028
gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA li... 124 5e-028
gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. v... 122 1e-027
gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. v... 122 1e-027
gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed D... 122 1e-027
gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA li... 115 2e-025
gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subs... 111 5e-024
gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthe... 101 3e-021
gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. v... 101 3e-021
gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA li... 100 5e-021
>gb|AV927733.1|AV927733 AV927733 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 3', mRNA sequence
Length = 626
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 510 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 331
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 330 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 214
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +2
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 215 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 394
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 395 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 511
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +1
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 223 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 402
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 403 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 507
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -2
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 511 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 332
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 331 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 215
>gb|AV934689.1|AV934689 AV934689 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 3', mRNA sequence
Length = 678
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 564 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 385
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 384 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 268
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +2
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 269 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 448
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 449 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 565
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +1
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 277 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 456
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 457 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 561
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 565 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 386
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 385 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 269
>gb|AV936387.1|AV936387 AV936387 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 3', mRNA sequence
Length = 650
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 534 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 355
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 354 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 238
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +2
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 239 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 418
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 419 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 535
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +1
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 247 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 426
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 427 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 531
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -2
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 535 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 356
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 355 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 239
>gb|BJ473617.1|BJ473617 BJ473617 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 3', mRNA sequence
Length = 633
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 518 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 339
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 338 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 222
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 223 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 402
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 403 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 519
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +3
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 231 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 410
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 411 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 515
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -1
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 519 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 340
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 339 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 223
>gb|BJ475011.1|BJ475011 BJ475011 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 3', mRNA sequence
Length = 623
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 512 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 333
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 332 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 216
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 217 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 396
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 397 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 513
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +3
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 225 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 404
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 405 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 509
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 513 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 334
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 333 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 217
>gb|BJ477252.1|BJ477252 BJ477252 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 3', mRNA sequence
Length = 623
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 512 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 333
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 332 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 216
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 217 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 396
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 397 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 513
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +3
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 225 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 404
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 405 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 509
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 513 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 334
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 333 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 217
>gb|BQ661605.1|BQ661605 HM04E05u HM Hordeum vulgare subsp. vulgare cDNA clone HM04E05
3-PRIME, mRNA sequence
Length = 616
Score = 219 bits (472), Expect = 1e-056
Identities = 87/99 (87%), Positives = 95/99 (95%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 574 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 395
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 394 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 278
Score = 148 bits (317), Expect = 3e-035
Identities = 65/99 (65%), Positives = 67/99 (67%)
Frame = -2 / +3
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 279 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 458
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A IDPHSP I G A A RS+PHPVGMKARMQT M
Sbjct: 459 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQTNM 575
Score = 121 bits (259), Expect = 3e-027
Identities = 53/95 (55%), Positives = 66/95 (69%)
Frame = -1 / +2
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 287 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 466
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANK 6
DRPPQP + R L ++EQ PS HEGKDA++
Sbjct: 467 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDADE 571
Score = 117 bits (251), Expect = 4e-026
Identities = 55/99 (55%), Positives = 65/99 (65%)
Frame = +2 / -3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
H+ LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +V
Sbjct: 575 HIRLHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVV 396
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
PVRV VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 395 PVRV*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 279
>gb|AV931607.1|AV931607 AV931607 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 3', mRNA sequence
Length = 508
Score = 214 bits (462), Expect = 3e-055
Identities = 85/97 (87%), Positives = 93/97 (95%)
Frame = +3 / -2
Query: 9 VCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPF 188
VCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWFPF
Sbjct: 507 VCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPF 328
Query: 189 VSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
VSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 327 VSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 217
Score = 145 bits (312), Expect = 2e-034
Identities = 64/97 (65%), Positives = 66/97 (68%)
Frame = -2 / +2
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 218 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 397
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
A IDPHSP I G A A RS+PHPVGMKARMQT
Sbjct: 398 ARARIDPHSPTLMIAGFSA*ATRSRPHPVGMKARMQT 508
Score = 121 bits (258), Expect = 5e-027
Identities = 53/94 (56%), Positives = 65/94 (69%)
Frame = -1 / +1
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKS 111
PR V LV +QD DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S
Sbjct: 226 PRRPVLLVPTQDPRDLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*S 405
Query: 110 LDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDAN 9
DRPPQP + R L ++EQ PS HEGKDA+
Sbjct: 406 PDRPPQPHPHDRRLQCLSHEEQAPSRWHEGKDAD 507
Score = 114 bits (244), Expect = 4e-025
Identities = 54/96 (56%), Positives = 63/96 (65%)
Frame = +2 / -1
Query: 11 LHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLVPVR 190
LHPCLHA+ MG AP +A D + AVGVD GS +RD +GA+ +H P +VPVR
Sbjct: 505 LHPCLHANGMGPAPRGSGTEAGDHEGGAVGVDPGSSSWVRDHHGAAALHPDRVPGVVPVR 326
Query: 191 VRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQG 298
V VPD DA+QPGLQ SADL PG QE P AEQG
Sbjct: 325 V*VPDSDALQPGLQPWSADLEDPGWAQEGPGGAEQG 218
>gb|BM377017.2|BM377017 EBem05_SQ003_O02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_O02 5', mRNA sequence
Length = 466
Score = 185 bits (398), Expect = 2e-046
Identities = 73/82 (89%), Positives = 80/82 (97%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I K+GLWGSI+ALARGY+I+MGLLLFTPIAFLAWF
Sbjct: 220 IFVCILAFMPTGWGLLLVAQALKPAIMKVGLWGSIRALARGYQIIMGLLLFTPIAFLAWF 399
Query: 183 PFVSEFQTRMLFNQAFSRGLQI 248
PFVSEFQTRMLFNQAFSRGLQI
Sbjct: 400 PFVSEFQTRMLFNQAFSRGLQI 465
Score = 117 bits (251), Expect = 4e-026
Identities = 52/82 (63%), Positives = 54/82 (65%)
Frame = -2 / -3
Query: 247 ICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIDPHSPIF*ITGL 68
ICRP LKAWL SI VWNSDTNGN AR A+GV A IDPHSP F I G
Sbjct: 464 ICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMIWYPRARARIDPHSPTFMIAGF 285
Query: 67 IAWAIRSKPHPVGMKARMQTKM 2
A A RS+PHPVGMKARMQT M
Sbjct: 284 SA*ATRSRPHPVGMKARMQTNM 219
Score = 111 bits (237), Expect = 4e-024
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = -1 / -2
Query: 248 DLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*DLVAPGKSLDRPPQPDLLNHRP 69
DLQT+AEGLVE+HP LEL HEREP +E + E+++PH DLV S DRPPQP L + R
Sbjct: 465 DLQTTAEGLVEEHPSLELRHEREPRQERDRGEEQQPHDDLVPTS*SPDRPPQPHLHDRRL 286
Query: 68 DSLGNQEQTPSSGHEGKDANK 6
L ++EQ PS HEGKDA++
Sbjct: 285 QCLSHEEQAPSRWHEGKDADE 223
>gb|BU972175.1|BU972175 HB20N14r BC Hordeum vulgare subsp. vulgare cDNA clone HB20N14
5-PRIME, mRNA sequence
Length = 373
Score = 182 bits (392), Expect = 1e-045
Identities = 72/100 (72%), Positives = 86/100 (86%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VC LAF+PTGWG+LLIAQ P+ + GLWGS++ALAR YE++MG+LLFTPI L+WF
Sbjct: 36 ILVCFLAFLPTGWGILLIAQPCIPLFRVTGLWGSVRALARAYEVIMGMLLFTPITVLSWF 215
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG KK+R + +K+*
Sbjct: 216 PFVSEFQTRMLFNQAFSRGLQISRILGGQKKERASSTKD* 335
Score = 111 bits (238), Expect = 3e-024
Identities = 51/99 (51%), Positives = 57/99 (57%)
Frame = -2 / -1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SL+ RSF PPRIR+IC PLL AWLNSI VWNS+T GN R +GV
Sbjct: 331 SLVLEARSFF*PPRIRDICSPLLNAWLNSIRVWNSETKGNHDRTVIGVKRSIPMITSYAR 152
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A DPHSP+ G+ AI S PHPVG AR QT M
Sbjct: 151 ARARTDPHSPVTRKRGMQGCAISSIPHPVGKNARKQTSM 35
>gb|CD663693.1|CD663693 UCRHV18_06bd04_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd04, mRNA sequence
Length = 550
Score = 178 bits (383), Expect = 3e-044
Identities = 71/83 (85%), Positives = 79/83 (95%)
Frame = +3 / -1
Query: 51 LIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAF 230
L+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAF
Sbjct: 550 LVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAF 371
Query: 231 SRGLQISRILGGHKKDRGTRSKE 299
SRGLQISRILGGHKKDR RSK+
Sbjct: 370 SRGLQISRILGGHKKDRAARSKD 302
Score = 111 bits (236), Expect = 5e-024
Identities = 49/79 (62%), Positives = 50/79 (63%)
Frame = -2 / +3
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 303 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 482
Query: 118 XXALIDPHSPIF*ITGLIA 62
A IDPHSP I G A
Sbjct: 483 ARARIDPHSPTLMIAGFSA 539
>gb|AV931608.1|AV931608 AV931608 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 3', mRNA sequence
Length = 358
Score = 171 bits (367), Expect(2) = 2e-042
Identities = 68/80 (85%), Positives = 75/80 (93%)
Frame = +3 / -3
Query: 60 QAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG 239
QA++P I ++GLWGSI+ALARGYEI+MG LLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG
Sbjct: 356 QALKPAIMRVGLWGSIRALARGYEIIMGXLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRG 177
Query: 240 LQISRILGGHKKDRGTRSKE 299
LQISRILGGHKKDR RSK+
Sbjct: 176 LQISRILGGHKKDRAARSKD 117
Score = 108 bits (230), Expect(2) = 1e-023
Identities = 49/79 (62%), Positives = 50/79 (63%)
Frame = -2 / +1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 118 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSXPMMISYPR 297
Query: 118 XXALIDPHSPIF*ITGLIA 62
A IDPH P I G A
Sbjct: 298 ARARIDPHXPTLMIAGXSA 354
Score = 20.8 bits (39), Expect(2) = 2e-042
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3 / -2
Query: 417 Q*YVCMYA 440
Q*YVCMY+
Sbjct: 24 Q*YVCMYS 1
Score = 20.3 bits (38), Expect(2) = 1e-023
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2 / +2
Query: 436 YIHTYY 419
YIHTYY
Sbjct: 5 YIHTYY 22
>gb|AV931716.1|AV931716 AV931716 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23o13 3', mRNA sequence
Length = 413
Score = 164 bits (352), Expect = 5e-040
Identities = 66/74 (89%), Positives = 71/74 (95%)
Frame = +3 / -1
Query: 78 IQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI 257
I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI
Sbjct: 413 IMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRI 234
Query: 258 LGGHKKDRGTRSKE 299
LGGHKKDR RSK+
Sbjct: 233 LGGHKKDRAARSKD 192
Score = 107 bits (229), Expect = 5e-023
Identities = 46/70 (65%), Positives = 47/70 (67%)
Frame = -2 / +1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSFLCPPRI EICRP LKAWL SI VWNSDTNGN AR A+GV
Sbjct: 193 SLLRAARSFLCPPRILEICRPRLKAWLKSIRVWNSDTNGNHARNAIGVKSSSPMMISYPR 372
Query: 118 XXALIDPHSP 89
A IDPHSP
Sbjct: 373 ARARIDPHSP 402
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 157 bits (338), Expect(2) = 4e-039
Identities = 61/74 (82%), Positives = 69/74 (93%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWGLLL+AQA++P I ++GLWGSI+ALARGYEI+MGLLLFTPIAFLAWF
Sbjct: 411 IFVCILAFMPTGWGLLLVAQALKPAIMRVGLWGSIRALARGYEIIMGLLLFTPIAFLAWF 590
Query: 183 PFVSEFQTRMLFNQ 224
PFVSEFQT ML +
Sbjct: 591 PFVSEFQTXMLLTR 632
Score = 93.6 bits (198), Expect(2) = 5e-021
Identities = 42/73 (57%), Positives = 45/73 (61%)
Frame = -2 / -3
Query: 220 LNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALIDPHSPIF*ITGLIAWAIRSKP 41
+ SI VWNSDTNGN AR A+GV A IDPHSP I G A A RS+P
Sbjct: 628 VKSIXVWNSDTNGNHARNAIGVKSSSPMMISYPRARARIDPHSPTLMIAGFSA*ATRSRP 449
Query: 40 HPVGMKARMQTKM 2
HPVGMKARMQT M
Sbjct: 448 HPVGMKARMQTNM 410
Score = 26.7 bits (52), Expect(2) = 5e-021
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -1
Query: 247 ICRPLLKAWLNS 212
ICRP LKAWL +
Sbjct: 654 ICRPRLKAWLRA 619
Score = 23.5 bits (45), Expect(2) = 4e-039
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / +2
Query: 219 NQAFSRGLQ 245
NQAFSRGLQ
Sbjct: 626 NQAFSRGLQ 652
>gb|CD663695.1|CD663695 UCRHV18_06bd07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bd07, mRNA sequence
Length = 506
Score = 144 bits (308), Expect = 6e-034
Identities = 59/64 (92%), Positives = 62/64 (96%)
Frame = +3 / -3
Query: 108 KALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
+ALARGYEI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR
Sbjct: 498 RALARGYEIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAA 319
Query: 288 RSKE 299
RSK+
Sbjct: 318 RSKD 307
>gb|AV837078.1|AV837078 AV837078 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 618
Score = 140 bits (300), Expect = 7e-033
Identities = 51/94 (54%), Positives = 76/94 (80%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ ILA++PTGWG+L IA A +P+++++GLW ++++LAR Y+ MG+++F PIA +WF
Sbjct: 586 VLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWF 407
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 406 PFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 305
>gb|BG415664.1|BG415664 HVSMEk0007G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007G03f, mRNA sequence
Length = 641
Score = 140 bits (300), Expect = 7e-033
Identities = 51/94 (54%), Positives = 76/94 (80%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ ILA++PTGWG+L IA A +P+++++GLW ++++LAR Y+ MG+++F PIA +WF
Sbjct: 499 VLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWF 320
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 319 PFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 218
>gb|BG417338.1|BG417338 HVSMEk0017J08f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017J08f, mRNA sequence
Length = 839
Score = 140 bits (300), Expect = 7e-033
Identities = 51/94 (54%), Positives = 76/94 (80%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ ILA++PTGWG+L IA A +P+++++GLW ++++LAR Y+ MG+++F PIA +WF
Sbjct: 161 VLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWF 340
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 341 PFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 442
>gb|BM374568.2|BM374568 EBpi03_SQ003_P19_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_P19 5', mRNA sequence
Length = 425
Score = 140 bits (300), Expect = 7e-033
Identities = 55/71 (77%), Positives = 65/71 (91%)
Frame = +3 / +1
Query: 90 GLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGH 269
GLWGS++ALAR YE++MG+LLFTPI L+WFPFVSEFQTRMLFNQAFSRGLQISRILGG
Sbjct: 16 GLWGSVRALARAYEVIMGMLLFTPITVLSWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 195
Query: 270 KKDRGTRSKE* 302
KK+R + +K+*
Sbjct: 196 KKERASSTKD* 228
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 140 bits (300), Expect = 7e-033
Identities = 51/94 (54%), Positives = 76/94 (80%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ ILA++PTGWG+L IA A +P+++++GLW ++++LAR Y+ MG+++F PIA +WF
Sbjct: 5553 VLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWF 5732
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ ++ G
Sbjct: 5733 PFISTFQTRLLFNQAFSRGLEISLILAGNNQNAG 5834
>gb|BG418775.1|BG418775 HVSMEk0024G07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G07f, mRNA sequence
Length = 834
Score = 136 bits (292), Expect = 9e-032
Identities = 50/88 (56%), Positives = 72/88 (81%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ ILA++PTGWG+L IA A +P+++++GLW ++++LAR Y+ MG+++F PIA +WF
Sbjct: 383 VLASILAYVPTGWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWF 562
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGG 266
PF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 563 PFISTFQTRLLFNQAFSRGLEISLILAG 646
>gb|CD663772.1|CD663772 UCRHV18_06cd06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06cd06, mRNA sequence
Length = 639
Score = 132 bits (282), Expect = 2e-030
Identities = 48/94 (51%), Positives = 73/94 (77%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ ILA++PTGWG+ IA A +P+++++GLW ++++LA Y+ MG+++F PIA +WF
Sbjct: 624 VLASILAYVPTGWGIFSIAVAWKPIVKRLGLWKTVRSLAPLYDAGMGMIIFVPIAICSWF 445
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+I IL G+ ++ G
Sbjct: 444 PFISPFQTRLLFNQAFSRGLEIFFILAGNNQNAG 343
>gb|BJ474020.1|BJ474020 BJ474020 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 3', mRNA sequence
Length = 393
Score = 129 bits (276), Expect = 1e-029
Identities = 53/57 (92%), Positives = 55/57 (96%)
Frame = +3 / -2
Query: 129 EILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
EI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 392 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 222
>gb|BJ474554.1|BJ474554 BJ474554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 3', mRNA sequence
Length = 415
Score = 129 bits (276), Expect = 1e-029
Identities = 53/57 (92%), Positives = 55/57 (96%)
Frame = +3 / -2
Query: 129 EILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
EI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 414 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 244
>gb|BJ476230.1|BJ476230 BJ476230 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 3', mRNA sequence
Length = 414
Score = 129 bits (276), Expect = 1e-029
Identities = 53/57 (92%), Positives = 55/57 (96%)
Frame = +3 / -2
Query: 129 EILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
EI+MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 413 EIIMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 243
>gb|CB876259.1|CB876259 HX10M03w HX Hordeum vulgare subsp. vulgare cDNA clone HX10M03
3-PRIME, mRNA sequence
Length = 559
Score = 126 bits (270), Expect = 1e-028
Identities = 46/83 (55%), Positives = 68/83 (81%)
Frame = +3 / -3
Query: 36 GWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRML 215
GWG+L IA A +P+++++GLW ++++LAR Y+ MG+++F PIA +WFPF+S FQTR+L
Sbjct: 557 GWGILSIAVAWKPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLL 378
Query: 216 FNQAFSRGLQISRILGGHKKDRG 284
FNQAFSRGL+IS IL G+ ++ G
Sbjct: 377 FNQAFSRGLEISLILAGNNQNAG 309
>gb|BJ469981.1|BJ469981 BJ469981 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14k06 5', mRNA sequence
Length = 483
Score = 124 bits (265), Expect = 5e-028
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = +3 / +1
Query: 138 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 22 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 183
>gb|BJ472233.1|BJ472233 BJ472233 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32p02 5', mRNA sequence
Length = 471
Score = 124 bits (265), Expect = 5e-028
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = +3 / +1
Query: 138 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 10 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 171
>gb|BJ473277.1|BJ473277 BJ473277 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 5', mRNA sequence
Length = 474
Score = 124 bits (265), Expect = 5e-028
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = +3 / +1
Query: 138 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 13 MGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 174
>gb|BU995906.1|BU995906 HM11L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
5-PRIME, mRNA sequence
Length = 641
Score = 122 bits (262), Expect = 1e-027
Identities = 47/93 (50%), Positives = 69/93 (74%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ +GLW S++ ++R Y+ MG ++F PI F +WF
Sbjct: 81 LFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFFSWF 260
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 281
PFVS FQ+R+LFNQAFSRGL+IS IL G+K ++
Sbjct: 261 PFVSTFQSRILFNQAFSRGLEISLILAGNKANQ 359
>gb|CB882058.1|CB882058 HM11L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11L21
3-PRIME, mRNA sequence
Length = 585
Score = 122 bits (262), Expect = 1e-027
Identities = 47/93 (50%), Positives = 69/93 (74%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ +GLW S++ ++R Y+ MG ++F PI F +WF
Sbjct: 564 LFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFFSWF 385
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 281
PFVS FQ+R+LFNQAFSRGL+IS IL G+K ++
Sbjct: 384 PFVSTFQSRILFNQAFSRGLEISLILAGNKANQ 286
>gb|CD662722.1|CD662722 UCRHV18_02df07_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02df07, mRNA sequence
Length = 676
Score = 122 bits (262), Expect = 1e-027
Identities = 47/93 (50%), Positives = 69/93 (74%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ +GLW S++ ++R Y+ MG ++F PI F +WF
Sbjct: 657 LFASALAFLATGWCILCLAITWKRVVKTLGLWDSVREISRMYDAGMGAVIFAPIVFFSWF 478
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 281
PFVS FQ+R+LFNQAFSRGL+IS IL G+K ++
Sbjct: 477 PFVSTFQSRILFNQAFSRGLEISLILAGNKANQ 379
>gb|BJ471422.1|BJ471422 BJ471422 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18e21 5', mRNA sequence
Length = 447
Score = 115 bits (246), Expect = 2e-025
Identities = 47/52 (90%), Positives = 48/52 (92%)
Frame = +3 / +1
Query: 144 LLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
LLLFTPI FLAWFPFV EFQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 1 LLLFTPIXFLAWFPFVXEFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 156
>gb|AJ461988.1|AJ461988 AJ461988 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G08F1, mRNA sequence
Length = 300
Score = 111 bits (236), Expect = 5e-024
Identities = 39/72 (54%), Positives = 60/72 (83%)
Frame = +3 / +3
Query: 69 RPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQI 248
+P+++++GLW ++++LAR Y+ MG+++F PIA +WFPF+S FQTR+LFNQAFSRGL+I
Sbjct: 3 KPIVKRLGLWKTVRSLARLYDAGMGMIIFVPIAICSWFPFISTFQTRLLFNQAFSRGLEI 182
Query: 249 SRILGGHKKDRG 284
S IL G+ ++ G
Sbjct: 183 SLILAGNNQNAG 218
>gb|BQ754043.1|BQ754043 EBca01_SQ002_K10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_K10 5', mRNA sequence
Length = 440
Score = 101 bits (216), Expect = 3e-021
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3 / +3
Query: 171 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR TR+KE*
Sbjct: 24 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRATRNKE* 155
>gb|CB883678.1|CB883678 HQ02P09w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P09
3-PRIME, mRNA sequence
Length = 541
Score = 101 bits (216), Expect = 3e-021
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3 / +1
Query: 171 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR TR+KE*
Sbjct: 31 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRATRNKE* 162
>gb|BJ477461.1|BJ477461 BJ477461 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal41i04 3', mRNA sequence
Length = 405
Score = 100 bits (214), Expect = 5e-021
Identities = 41/46 (89%), Positives = 42/46 (91%)
Frame = +3 / -2
Query: 162 IAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
IAFL WFPFVS FQTRMLFNQAFSRGLQISRILGGHKKDR RSK+
Sbjct: 404 IAFLXWFPFVSXFQTRMLFNQAFSRGLQISRILGGHKKDRAARSKD 267
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 299,145,949
Number of Sequences: 312970
Number of extensions: 4797496
Number of successful extensions: 62539
Number of sequences better than 1.0e-020: 52
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6574589895
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)