TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke devel... 233 9e-061
gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke devel... 233 9e-061
gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 ... 233 9e-061
gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, n... 233 9e-061
gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, n... 233 9e-061
gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hyd... 233 9e-061
gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, wat... 233 9e-061
gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. v... 233 9e-061
gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. v... 233 9e-061
gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. v... 233 9e-061
gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. v... 233 9e-061
gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. v... 233 9e-061
gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. v... 233 9e-061
gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day ger... 231 3e-060
gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. v... 231 3e-060
gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. v... 231 3e-060
gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm librar... 231 3e-060
gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm librar... 231 3e-060
gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA li... 229 1e-059
gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. v... 228 2e-059
gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA li... 224 5e-058
gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke devel... 209 2e-053
gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. v... 199 1e-050
gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 ... 182 3e-045
gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. v... 176 2e-043
gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke devel... 172 1e-042
gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. v... 170 1e-041
gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. v... 162 2e-039
gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. v... 127 9e-036
gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA li... 141 4e-033
gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA li... 137 8e-032
gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA,... 130 7e-030
gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. v... 123 1e-027
gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike... 114 7e-025
>gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11T 5',
mRNA sequence
Length = 622
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +1
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 118 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 297
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 298 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 414
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 413 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 234
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 233 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 138
>gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01V 5',
mRNA sequence
Length = 594
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 131 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 310
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 311 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 427
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 426 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 247
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 246 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 151
>gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089G22f, mRNA sequence
Length = 650
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 113 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 292
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 293 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 409
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 408 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 229
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 228 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 133
>gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_N15 5', mRNA sequence
Length = 529
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 119 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 298
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 299 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 415
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 414 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 235
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 234 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 139
>gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P19 5', mRNA sequence
Length = 465
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 146 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 325
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 326 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 442
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 441 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 262
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 261 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 166
>gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_A04 5', mRNA sequence
Length = 636
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 116 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 295
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 296 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 412
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 411 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 232
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 231 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 136
>gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_P20 5', mRNA sequence
Length = 524
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 116 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 295
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 296 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 412
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 411 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 232
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 231 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 136
>gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. vulgare cDNA clone HB11O15
5-PRIME, mRNA sequence
Length = 476
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +3
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 102 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 281
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 282 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 398
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 397 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 218
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 217 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 122
>gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12B16
5-PRIME, mRNA sequence
Length = 535
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +3
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 126 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 305
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 306 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 422
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 421 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 242
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 241 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 146
>gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. vulgare cDNA clone HF06M14
5-PRIME, mRNA sequence
Length = 572
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +1
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 61 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 240
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 241 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 357
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 356 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 177
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 176 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 81
>gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B05
5-PRIME, mRNA sequence
Length = 585
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +1
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 88 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 267
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 268 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 384
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 383 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 204
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 203 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 108
>gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13I22
5-PRIME, mRNA sequence
Length = 634
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 119 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 298
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 299 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 415
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 414 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 235
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 234 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 139
>gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. vulgare cDNA clone HS05G17
5-PRIME, mRNA sequence
Length = 533
Score = 233 bits (503), Expect = 9e-061
Identities = 96/99 (96%), Positives = 99/99 (100%)
Frame = +1 / +3
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 162 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 341
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 342 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 458
Score = 172 bits (370), Expect = 2e-042
Identities = 75/92 (81%), Positives = 79/92 (85%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 457 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 278
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 277 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 182
>gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N07 5', mRNA sequence
Length = 459
Score = 231 bits (499), Expect = 3e-060
Identities = 95/99 (95%), Positives = 98/99 (98%)
Frame = +1 / +1
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 61 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 240
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMF RGDSVIIVLRNPK*
Sbjct: 241 VPKTGKGKKKALPVNKDRFISKMFFRGDSVIIVLRNPK* 357
Score = 171 bits (367), Expect = 5e-042
Identities = 74/92 (80%), Positives = 79/92 (85%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP +NILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 356 HFGFLRTMMTESPRKNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 177
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 176 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 81
>gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N19
5-PRIME, mRNA sequence
Length = 622
Score = 231 bits (499), Expect = 3e-060
Identities = 97/102 (95%), Positives = 99/102 (97%)
Frame = +1 / +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 124 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 303
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQ 507
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* Q
Sbjct: 304 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*FRQQ 429
Score = 179 bits (385), Expect = 2e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHISRTFS TMLQ RS A
Sbjct: 419 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 240
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRPSSFLL RQL+ TWVLFLTLI+ DRGPVLN
Sbjct: 239 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 141
>gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N23
5-PRIME, mRNA sequence
Length = 461
Score = 231 bits (499), Expect = 3e-060
Identities = 97/102 (95%), Positives = 99/102 (97%)
Frame = +1 / +3
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 141 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 320
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQ 507
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* Q
Sbjct: 321 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*FRQQ 446
Score = 179 bits (385), Expect = 2e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = -3 / -2
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHISRTFS TMLQ RS A
Sbjct: 436 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 257
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRPSSFLL RQL+ TWVLFLTLI+ DRGPVLN
Sbjct: 256 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 158
>gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL21a1 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 629
Score = 231 bits (499), Expect = 3e-060
Identities = 97/102 (95%), Positives = 99/102 (97%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 116 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 295
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQ 507
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* Q
Sbjct: 296 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*FRQQ 421
Score = 179 bits (385), Expect = 2e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHISRTFS TMLQ RS A
Sbjct: 411 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 232
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRPSSFLL RQL+ TWVLFLTLI+ DRGPVLN
Sbjct: 231 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 133
>gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46e5 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 643
Score = 231 bits (499), Expect = 3e-060
Identities = 97/102 (95%), Positives = 99/102 (97%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 116 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 295
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQ 507
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* Q
Sbjct: 296 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*FRQQ 421
Score = 179 bits (385), Expect = 2e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = -3 / -2
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHISRTFS TMLQ RS A
Sbjct: 411 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 232
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRPSSFLL RQL+ TWVLFLTLI+ DRGPVLN
Sbjct: 231 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 133
>gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 3', mRNA sequence
Length = 728
Score = 229 bits (495), Expect = 1e-059
Identities = 95/98 (96%), Positives = 98/98 (100%)
Frame = +1 / -1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMWTE+
Sbjct: 536 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEV 357
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 356 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 243
Score = 170 bits (366), Expect = 7e-042
Identities = 75/93 (80%), Positives = 78/93 (83%)
Frame = -3 / +1
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A
Sbjct: 241 NHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNAL 420
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPSSFLL RQL+ TWVLFLTLI+ DRGPVLN
Sbjct: 421 MRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 519
>gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02I03
5-PRIME, mRNA sequence
Length = 623
Score = 228 bits (493), Expect = 2e-059
Identities = 96/102 (94%), Positives = 98/102 (96%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFST PLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 98 KKEEEEFSTAPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 277
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQ 507
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* Q
Sbjct: 278 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*FRQQ 403
Score = 175 bits (377), Expect = 2e-043
Identities = 77/93 (82%), Positives = 80/93 (86%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHISRTFS TMLQ RS A
Sbjct: 393 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 214
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRPSSFLL RQL+ TWVLFLTLI+ DRG VLN
Sbjct: 213 TRPSSFLLFRQLISTWVLFLTLIMSRDRGAVLN 115
>gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 3', mRNA sequence
Length = 628
Score = 224 bits (483), Expect = 5e-058
Identities = 93/98 (94%), Positives = 96/98 (97%)
Frame = +1 / -2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KK E EFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMWTE+
Sbjct: 543 KKXEXEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEV 364
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 363 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 250
Score = 170 bits (366), Expect = 7e-042
Identities = 75/93 (80%), Positives = 78/93 (83%)
Frame = -3 / +2
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A
Sbjct: 248 NHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNAL 427
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RPSSFLL RQL+ TWVLFLTLI+ DRGPVLN
Sbjct: 428 MRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 526
>gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11u 3',
mRNA sequence
Length = 554
Score = 209 bits (450), Expect = 2e-053
Identities = 86/99 (86%), Positives = 91/99 (91%)
Frame = +1 / -3
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
G++ TGPL +LM+SVKNNTQVLIN RNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 534 GRRRRRSSXTGPLXILMLSVKNNTQVLINXRNNKKLLGRVRAFDRHCNMVLENVREMWTE 355
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 354 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 238
Score = 163 bits (351), Expect = 8e-040
Identities = 72/90 (80%), Positives = 75/90 (83%)
Frame = -3 / +2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 239 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 418
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPV 225
RPS+FLL R L+ TWVLFLTL +R RGPV
Sbjct: 419 RPSNFLLFRXLISTWVLFLTLSMRMXRGPV 508
>gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63H11
5-PRIME, mRNA sequence
Length = 390
Score = 199 bits (429), Expect = 1e-050
Identities = 81/83 (97%), Positives = 83/83 (100%)
Frame = +1 / +3
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 141 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 320
Query: 382 PKTGKGKKKALPVNKDRFISKMF 450
PKTGKGKKKALPVNKDRFISKMF
Sbjct: 321 PKTGKGKKKALPVNKDRFISKMF 389
Score = 147 bits (316), Expect = 6e-035
Identities = 65/77 (84%), Positives = 67/77 (87%)
Frame = -3 / -3
Query: 449 NILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTW 270
NILLMNLSLFTGRAFFLPLPV G SVHISRTFS TMLQ RS A TRPSSFLL RQL+ TW
Sbjct: 388 NILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNALTRPSSFLLFRQLISTW 209
Query: 269 VLFLTLIIRTDRGPVLN 219
VLFLTLI+ DRGPVLN
Sbjct: 208 VLFLTLIMSRDRGPVLN 158
>gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089A22f, mRNA sequence
Length = 958
Score = 182 bits (391), Expect = 3e-045
Identities = 77/99 (77%), Positives = 81/99 (81%)
Frame = +1 / -1
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GK + P + + QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 505 GKXRRRSSARAPSPSSCSASRPTPQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 326
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 325 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 209
Score = 143 bits (306), Expect(2) = 3e-036
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = -3 / +3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 210 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 389
Query: 314 RPSSFLLLRQLMRTW 270
RPS+FLL RQL+ TW
Sbjct: 390 RPSNFLLFRQLISTW 434
Score = 29.0 bits (57), Expect(2) = 3e-036
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3 / +1
Query: 269 VLFLTLIIRTDRGPVLN 219
VL LTL +R +RGPVLN
Sbjct: 436 VLVLTLSMRMERGPVLN 486
>gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
3-PRIME, mRNA sequence
Length = 492
Score = 176 bits (378), Expect = 2e-043
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +1 / -2
Query: 277 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLR 456
LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 491 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 312
Query: 457 GDSVIIVLRNPK* 495
GDSVIIVLRNPK*
Sbjct: 311 GDSVIIVLRNPK* 273
Score = 136 bits (291), Expect = 2e-031
Identities = 60/72 (83%), Positives = 62/72 (86%)
Frame = -3 / +1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 274 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 453
Query: 314 RPSSFLLLRQLM 279
RPS+FLL RQL+
Sbjct: 454 RPSNFLLFRQLI 489
>gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01u 3',
mRNA sequence
Length = 540
Score = 172 bits (371), Expect = 1e-042
Identities = 75/98 (76%), Positives = 80/98 (81%)
Frame = +1 / -3
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEE PL + + + L RNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 538 KEEEEFQHGPPLPSSCSASRTTPRCLSTARNNKKLLGRVRAFDRHCNMVLENVREMWTEV 359
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 358 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 245
Score = 131 bits (281), Expect(2) = 3e-033
Identities = 58/69 (84%), Positives = 59/69 (85%)
Frame = -3 / +3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 246 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 425
Query: 314 RPSSFLLLR 288
RPS+FLL R
Sbjct: 426 RPSNFLLFR 452
Score = 30.4 bits (60), Expect(2) = 3e-033
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3 / +1
Query: 287 QLMRTWVLFLTLIIRTDRG 231
QL+ TWVLFLTL +R G
Sbjct: 454 QLISTWVLFLTLSMRMGEG 510
>gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
3-PRIME, mRNA sequence
Length = 474
Score = 170 bits (365), Expect = 1e-041
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1 / -1
Query: 283 NCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGD 462
+CRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGD
Sbjct: 465 DCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGD 286
Query: 463 SVIIVLRNPK* 495
SVIIVLRNPK*
Sbjct: 285 SVIIVLRNPK* 253
Score = 133 bits (286), Expect = 8e-031
Identities = 59/70 (84%), Positives = 60/70 (85%)
Frame = -3 / +2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RS A T
Sbjct: 254 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 433
Query: 314 RPSSFLLLRQ 285
RPS+FLL RQ
Sbjct: 434 RPSNFLLFRQ 463
>gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
5-PRIME, mRNA sequence
Length = 376
Score = 162 bits (348), Expect = 2e-039
Identities = 64/67 (95%), Positives = 67/67 (100%)
Frame = +1 / +2
Query: 199 GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
GKKEEEEFSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 176 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 355
Query: 379 IPKTGKG 399
+PKTGKG
Sbjct: 356 VPKTGKG 376
Score = 103 bits (219), Expect = 1e-021
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = -3 / -2
Query: 398 PLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PLPV G SVHIS TFS TMLQ RS A TRPS+FLL RQL+ TWVLFLTL +R +RGPVLN
Sbjct: 375 PLPVFGTSVHISLTFSRTMLQ*RSNALTRPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 196
>gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
5-PRIME, mRNA sequence
Length = 474
Score = 127 bits (273), Expect(2) = 9e-036
Identities = 52/54 (96%), Positives = 54/54 (100%)
Frame = +1 / +3
Query: 334 HCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
+CNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 60 YCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 221
Score = 110 bits (235), Expect(2) = 1e-026
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = -3 / -3
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQW 333
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ+
Sbjct: 220 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQY 59
Score = 42.3 bits (86), Expect(2) = 9e-036
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 283 NCRNNKKLLGRVRAFDR 333
+CRNNKKLLGRVRAFDR
Sbjct: 10 DCRNNKKLLGRVRAFDR 60
Score = 29.0 bits (57), Expect(2) = 1e-026
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 332 RSKARTRPSSFLLLRQ 285
RS A TRPS+FLL RQ
Sbjct: 59 RSNALTRPSNFLLFRQ 12
>gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 5', mRNA sequence
Length = 513
Score = 141 bits (303), Expect = 4e-033
Identities = 57/59 (96%), Positives = 59/59 (100%)
Frame = +1 / +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMWTE
Sbjct: 337 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513
>gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 5', mRNA sequence
Length = 499
Score = 137 bits (293), Expect = 8e-032
Identities = 55/57 (96%), Positives = 57/57 (100%)
Frame = +1 / +3
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
KKEEEEFSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMW
Sbjct: 327 KKEEEEFSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497
>gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_I15 5', mRNA sequence
Length = 393
Score = 130 bits (279), Expect = 7e-030
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = +1 / +1
Query: 334 HCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1 HCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 162
Score = 109 bits (233), Expect = 2e-023
Identities = 47/53 (88%), Positives = 47/53 (88%)
Frame = -3 / -2
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQ 336
HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ
Sbjct: 161 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ 3
>gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52P01
5-PRIME, mRNA sequence
Length = 396
Score = 123 bits (263), Expect = 1e-027
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1 / +1
Query: 340 NMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQ 507
NMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* Q
Sbjct: 13 NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*FRQQ 180
Score = 111 bits (236), Expect = 6e-024
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = -3 / -2
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTML 339
+HFGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHISRTFS TML
Sbjct: 170 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTML 12
>gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025B11f, mRNA sequence
Length = 406
Score = 114 bits (243), Expect = 7e-025
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = +1 / +1
Query: 352 ENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
ENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1 ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 144
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 361,740,392
Number of Sequences: 312970
Number of extensions: 5834302
Number of successful extensions: 69810
Number of sequences better than 1.0e-020: 44
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 8228841546
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)