TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. v... 217 4e-056
gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. v... 217 4e-056
gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm librar... 217 4e-056
gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm librar... 217 4e-056
gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke devel... 217 6e-056
gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke devel... 217 6e-056
gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 ... 217 6e-056
gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, n... 217 6e-056
gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, n... 217 6e-056
gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hyd... 217 6e-056
gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, wat... 217 6e-056
gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. v... 217 6e-056
gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. v... 217 6e-056
gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. v... 217 6e-056
gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. v... 217 6e-056
gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. v... 217 6e-056
gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. v... 217 6e-056
gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA li... 216 1e-055
gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA li... 216 1e-055
gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day ger... 215 2e-055
gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. v... 215 3e-055
gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke devel... 205 2e-052
gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 ... 180 7e-050
gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. v... 186 1e-046
gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. v... 176 1e-043
gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. v... 170 7e-042
gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke devel... 168 2e-041
gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. v... 128 6e-036
gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. v... 146 1e-034
gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA,... 131 5e-030
gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA li... 127 4e-029
gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA li... 123 1e-027
gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. v... 123 1e-027
gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike... 114 4e-025
>gb|CA018517.1|CA018517 HV08N19r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N19
5-PRIME, mRNA sequence
Length = 622
Score = 217 bits (469), Expect = 4e-056
Identities = 91/92 (98%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 142 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 321
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 322 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 417
Score = 181 bits (390), Expect = 3e-045
Identities = 79/93 (84%), Positives = 82/93 (88%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TMLQ RS A
Sbjct: 419 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 240
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRPSSFLL RQL+ TWVLFLTLI+S DRGPVLN
Sbjct: 239 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 141
Score = 132 bits (282), Expect = 3e-030
Identities = 56/104 (53%), Positives = 71/104 (68%)
Frame = -3 / +3
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER+GDVD G +DWQ Q+
Sbjct: 147 HRAPVPAHDERQEQYPGTYQLPEQQEATWSRESI*PSLQHGSRERSGDVD*GSKDWQRQE 326
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVIAQPEARSLLKTVA 251
EG + EQG +HQQDVP RLGHH ++EP++I LK VA
Sbjct: 327 EGPSSEQGQVHQQDVPPRRLGHHCSKEPEMI*TATTPRTLKRVA 458
Score = 118 bits (252), Expect = 3e-026
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = +1 / -2
Query: 283 VGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIK 462
+ +S VP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VLE+HV + +K
Sbjct: 426 LSKSFRVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLENHVAMTVK 247
Query: 463 STNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
++ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 246 CSHATK*LLVVPAVDKYLGIVLDAHHEQGQGPGAELLLLLL 124
>gb|CA029325.1|CA029325 HZ64N23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N23
5-PRIME, mRNA sequence
Length = 461
Score = 217 bits (469), Expect = 4e-056
Identities = 91/92 (98%), Positives = 92/92 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 159 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 338
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 339 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 434
Score = 181 bits (390), Expect = 3e-045
Identities = 79/93 (84%), Positives = 82/93 (88%)
Frame = +2 / -2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TMLQ RS A
Sbjct: 436 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 257
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRPSSFLL RQL+ TWVLFLTLI+S DRGPVLN
Sbjct: 256 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 158
Score = 129 bits (277), Expect = 1e-029
Identities = 52/91 (57%), Positives = 67/91 (73%)
Frame = -3 / +2
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER+GDVD G +DWQ Q+
Sbjct: 164 HRAPVPAHDERQEQYPGTYQLPEQQEATWSRESI*PSLQHGSRERSGDVD*GSKDWQRQE 343
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVI 290
EG + EQG +HQQDVP RLGHH ++EP++I
Sbjct: 344 EGPSSEQGQVHQQDVPPRRLGHHCSKEPEMI 436
Score = 118 bits (252), Expect = 3e-026
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = +1 / -1
Query: 283 VGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIK 462
+ +S VP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VLE+HV + +K
Sbjct: 443 LSKSFRVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLENHVAMTVK 264
Query: 463 STNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
++ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 263 CSHATK*LLVVPAVDKYLGIVLDAHHEQGQGPGAELLLLLL 141
>gb|CV056821.1|CV056821 BNEL21a1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL21a1 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 629
Score = 217 bits (469), Expect = 4e-056
Identities = 91/92 (98%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 134 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 313
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 314 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 409
Score = 181 bits (390), Expect = 3e-045
Identities = 79/93 (84%), Positives = 82/93 (88%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TMLQ RS A
Sbjct: 411 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 232
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRPSSFLL RQL+ TWVLFLTLI+S DRGPVLN
Sbjct: 231 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 133
Score = 132 bits (282), Expect = 3e-030
Identities = 56/104 (53%), Positives = 71/104 (68%)
Frame = -3 / +1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER+GDVD G +DWQ Q+
Sbjct: 139 HRAPVPAHDERQEQYPGTYQLPEQQEATWSRESI*PSLQHGSRERSGDVD*GSKDWQRQE 318
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVIAQPEARSLLKTVA 251
EG + EQG +HQQDVP RLGHH ++EP++I LK VA
Sbjct: 319 EGPSSEQGQVHQQDVPPRRLGHHCSKEPEMI*TATTPRTLKRVA 450
Score = 118 bits (252), Expect = 3e-026
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = +1 / -2
Query: 283 VGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIK 462
+ +S VP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VLE+HV + +K
Sbjct: 418 LSKSFRVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLENHVAMTVK 239
Query: 463 STNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
++ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 238 CSHATK*LLVVPAVDKYLGIVLDAHHEQGQGPGAELLLLLL 116
>gb|CV059292.1|CV059292 BNEL46e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL46e5 5' similar to small nuclear
ribonucleoprotein D2, putative / snRNP core protein D2,
putative / Sm protein D2, putative, mRNA sequence
Length = 643
Score = 217 bits (469), Expect = 4e-056
Identities = 91/92 (98%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 134 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 313
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 314 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 409
Score = 181 bits (390), Expect = 3e-045
Identities = 79/93 (84%), Positives = 82/93 (88%)
Frame = +2 / -2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TMLQ RS A
Sbjct: 411 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 232
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRPSSFLL RQL+ TWVLFLTLI+S DRGPVLN
Sbjct: 231 TRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 133
Score = 132 bits (282), Expect = 3e-030
Identities = 56/104 (53%), Positives = 71/104 (68%)
Frame = -3 / +1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER+GDVD G +DWQ Q+
Sbjct: 139 HRAPVPAHDERQEQYPGTYQLPEQQEATWSRESI*PSLQHGSRERSGDVD*GSKDWQRQE 318
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVIAQPEARSLLKTVA 251
EG + EQG +HQQDVP RLGHH ++EP++I LK VA
Sbjct: 319 EGPSSEQGQVHQQDVPPRRLGHHCSKEPEMI*TATTPRTLKRVA 450
Score = 118 bits (252), Expect = 3e-026
Identities = 53/101 (52%), Positives = 71/101 (70%)
Frame = +1 / -1
Query: 283 VGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIK 462
+ +S VP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VLE+HV + +K
Sbjct: 418 LSKSFRVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLENHVAMTVK 239
Query: 463 STNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
++ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 238 CSHATK*LLVVPAVDKYLGIVLDAHHEQGQGPGAELLLLLL 116
>gb|AL506991.1|AL506991 AL506991 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11T 5',
mRNA sequence
Length = 622
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 139 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 318
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 319 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 414
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 413 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 234
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 233 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 138
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -2
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 414 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 235
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 234 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 118
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +3
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 144 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 323
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 324 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 413
>gb|AL508664.1|AL508664 AL508664 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01V 5',
mRNA sequence
Length = 594
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 152 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 331
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 332 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 427
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 426 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 247
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 246 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 151
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 427 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 248
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 247 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 131
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 157 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 336
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 337 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 426
>gb|BE195563.3|BE195563 HVSMEh0089G22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089G22f, mRNA sequence
Length = 650
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 134 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 313
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 314 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 409
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 408 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 229
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 228 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 133
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -2
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 409 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 230
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 229 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 113
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 139 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 318
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 319 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 408
>gb|BM376659.2|BM376659 EBem05_SQ002_N15_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_N15 5', mRNA sequence
Length = 529
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 140 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 319
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 320 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 415
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 414 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 235
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 234 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 139
Score = 119 bits (254), Expect = 2e-026
Identities = 53/99 (53%), Positives = 67/99 (67%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 415 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 236
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A+ L L LP
Sbjct: 235 ATKQLLVVPAVDKHLGVVLDAEHEDGEGPRAELLLLLLP 119
Score = 110 bits (235), Expect = 8e-024
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = -3 / +1
Query: 526 EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQ 347
EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+EG EQG +H+
Sbjct: 181 EQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQGQVHK 360
Query: 346 QDVPQGRLGHHRAEEPQV 293
QDVP GHHR +EP++
Sbjct: 361 QDVPPRGFGHHRPQEPEM 414
>gb|BM375320.2|BM375320 EBem06_SQ002_P19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P19 5', mRNA sequence
Length = 465
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 167 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 346
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 347 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 442
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 441 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 262
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 261 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 166
Score = 119 bits (254), Expect = 2e-026
Identities = 53/99 (53%), Positives = 67/99 (67%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 442 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 263
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A+ L L LP
Sbjct: 262 ATKQLLVVPAVDKHLGVVLDAEHEDGEGPRAELLLLLLP 146
Score = 110 bits (235), Expect = 8e-024
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = -3 / +1
Query: 526 EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQ 347
EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+EG EQG +H+
Sbjct: 208 EQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQGQVHK 387
Query: 346 QDVPQGRLGHHRAEEPQV 293
QDVP GHHR +EP++
Sbjct: 388 QDVPPRGFGHHRPQEPEM 441
>gb|BQ762752.1|BQ762752 EBro02_SQ006_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_A04 5', mRNA sequence
Length = 636
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 137 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 316
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 317 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 412
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 411 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 232
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 231 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 136
Score = 119 bits (254), Expect = 2e-026
Identities = 53/99 (53%), Positives = 67/99 (67%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 412 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 233
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A+ L L LP
Sbjct: 232 ATKQLLVVPAVDKHLGVVLDAEHEDGEGPRAELLLLLLP 116
Score = 110 bits (235), Expect = 8e-024
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = -3 / +1
Query: 526 EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQ 347
EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+EG EQG +H+
Sbjct: 178 EQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQGQVHK 357
Query: 346 QDVPQGRLGHHRAEEPQV 293
QDVP GHHR +EP++
Sbjct: 358 QDVPPRGFGHHRPQEPEM 411
>gb|BQ765714.1|BQ765714 EBro03_SQ007_P20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_P20 5', mRNA sequence
Length = 524
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 137 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 316
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 317 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 412
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 411 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 232
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 231 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 136
Score = 117 bits (250), Expect = 7e-026
Identities = 52/99 (52%), Positives = 66/99 (66%)
Frame = +1 / -2
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ L A SL +L PHLP VLE+HV V +K +
Sbjct: 412 SFRVPEDDDDRIPAEEHLAYEPVLVHREGFLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 233
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A+ L L LP
Sbjct: 232 ATKQLLVVPAVDKHLGVVLDAEHEDGEGPRAELLLLLLP 116
Score = 107 bits (229), Expect = 5e-023
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = -3 / +1
Query: 526 EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQ 347
EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+E EQG +H+
Sbjct: 178 EQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEESPPGEQGQVHK 357
Query: 346 QDVPQGRLGHHRAEEPQV 293
QDVP GHHR +EP++
Sbjct: 358 QDVPPRGFGHHRPQEPEM 411
>gb|BU969574.1|BU969574 HB11O15r BC Hordeum vulgare subsp. vulgare cDNA clone HB11O15
5-PRIME, mRNA sequence
Length = 476
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 123 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 302
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 303 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 398
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 397 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 218
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 217 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 122
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 398 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 219
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 218 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 102
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +2
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 128 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 307
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 308 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 397
>gb|BU977818.1|BU977818 HA12B16r HA Hordeum vulgare subsp. vulgare cDNA clone HA12B16
5-PRIME, mRNA sequence
Length = 535
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 147 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 326
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 327 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 422
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 421 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 242
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 241 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 146
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 422 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 243
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 242 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 126
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +2
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 152 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 331
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 332 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 421
>gb|BU985319.1|BU985319 HF06M14r HF Hordeum vulgare subsp. vulgare cDNA clone HF06M14
5-PRIME, mRNA sequence
Length = 572
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 82 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 261
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 262 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 357
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 356 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 177
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 176 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 81
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 357 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 178
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 177 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 61
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +3
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 87 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 266
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 267 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 356
>gb|BU988898.1|BU988898 HF19B05r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B05
5-PRIME, mRNA sequence
Length = 585
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 109 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 288
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 289 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 384
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 383 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 204
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 203 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 108
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 384 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 205
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 204 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 88
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +3
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 114 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 293
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 294 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 383
>gb|BU999178.1|BU999178 HI13I22r HI Hordeum vulgare subsp. vulgare cDNA clone HI13I22
5-PRIME, mRNA sequence
Length = 634
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 140 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 319
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 320 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 415
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 414 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 235
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 234 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 139
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 415 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 236
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 235 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 119
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 145 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 324
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 325 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 414
>gb|CA001732.1|CA001732 HS05G17r HS Hordeum vulgare subsp. vulgare cDNA clone HS05G17
5-PRIME, mRNA sequence
Length = 533
Score = 217 bits (468), Expect = 6e-056
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 183 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 362
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 363 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 458
Score = 169 bits (364), Expect = 1e-041
Identities = 74/92 (80%), Positives = 78/92 (84%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 457 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 278
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 277 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 182
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 68/99 (68%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 458 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 279
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A A+ L L LP
Sbjct: 278 ATKQLLVVPAVDKHLGVVLDAEHEDGEGARAELLLLLLP 162
Score = 112 bits (240), Expect = 2e-024
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = -3 / +2
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 188 HGPPLHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 367
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 368 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 457
>gb|AV928185.1|AV928185 AV928185 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 3', mRNA sequence
Length = 728
Score = 216 bits (466), Expect = 1e-055
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 518 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 339
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 338 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 243
Score = 177 bits (381), Expect = 6e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = +2 / +1
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+HLGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A
Sbjct: 241 NHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNAL 420
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPSSFLL RQL+ TWVLFLTLI+S DRGPVLN
Sbjct: 421 MRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 519
Score = 128 bits (275), Expect = 2e-029
Identities = 53/91 (58%), Positives = 66/91 (72%)
Frame = -3 / -3
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER GDVD G +DWQ Q+
Sbjct: 513 HRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQRQE 334
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVI 290
EG + EQG +HQQDVP RLGHH ++EPQ+I
Sbjct: 333 EGPSSEQGQVHQQDVPPRRLGHHCSKEPQMI 241
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 71/99 (71%)
Frame = +1 / +3
Query: 289 RSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKST 468
+S GVP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VLE+HV + +K +
Sbjct: 240 KSFGVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLENHVAMTVKCS 419
Query: 469 NPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
+ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 420 HATK*LLVVPAVDKYLGIVLDAHHEQGQGPGAELLLLLL 536
>gb|AV930242.1|AV930242 AV930242 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 3', mRNA sequence
Length = 628
Score = 216 bits (466), Expect = 1e-055
Identities = 90/92 (97%), Positives = 92/92 (100%)
Frame = -1 / -2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 525 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 346
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 345 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 250
Score = 177 bits (381), Expect = 6e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = +2 / +2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+HLGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A
Sbjct: 248 NHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNAL 427
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPSSFLL RQL+ TWVLFLTLI+S DRGPVLN
Sbjct: 428 MRPSSFLLFRQLISTWVLFLTLIMSRDRGPVLN 526
Score = 128 bits (275), Expect = 2e-029
Identities = 53/91 (58%), Positives = 66/91 (72%)
Frame = -3 / -1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER GDVD G +DWQ Q+
Sbjct: 520 HRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQRQE 341
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVI 290
EG + EQG +HQQDVP RLGHH ++EPQ+I
Sbjct: 340 EGPSSEQGQVHQQDVPPRRLGHHCSKEPQMI 248
Score = 121 bits (259), Expect = 4e-027
Identities = 54/99 (54%), Positives = 71/99 (71%)
Frame = +1 / +1
Query: 289 RSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKST 468
+S GVP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VLE+HV + +K +
Sbjct: 247 KSFGVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLENHVAMTVKCS 426
Query: 469 NPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
+ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 427 HATK*LLVVPAVDKYLGIVLDAHHEQGQGPGAELLLLLL 543
>gb|BQ761651.1|BQ761651 EBem10_SQ001_N07_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N07 5', mRNA sequence
Length = 459
Score = 215 bits (464), Expect = 2e-055
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 82 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 261
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMF RGDSVIIVLRNPK*
Sbjct: 262 KKKALPVNKDRFISKMFFRGDSVIIVLRNPK* 357
Score = 168 bits (361), Expect = 3e-041
Identities = 73/92 (79%), Positives = 78/92 (84%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP +NILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 356 HFGFLRTMMTESPRKNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 177
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 176 RPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 81
Score = 119 bits (254), Expect = 2e-026
Identities = 53/99 (53%), Positives = 67/99 (67%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 357 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 178
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV A+D++LGVVL+ H + A+ L L LP
Sbjct: 177 ATKQLLVVPAVDKHLGVVLDAEHEDGEGPRAELLLLLLP 61
Score = 105 bits (225), Expect = 2e-022
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = -3 / +3
Query: 526 EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQ 347
EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+EG EQG +H+
Sbjct: 123 EQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQGQVHK 302
Query: 346 QDVPQGRLGHHRAEEPQV 293
QDV GHHR +EP++
Sbjct: 303 QDVLPRGFGHHRPQEPEM 356
>gb|BQ466427.1|BQ466427 HT02I03r HT Hordeum vulgare subsp. vulgare cDNA clone HT02I03
5-PRIME, mRNA sequence
Length = 623
Score = 215 bits (463), Expect = 3e-055
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FST PLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 116 FSTAPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 295
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 296 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 391
Score = 177 bits (382), Expect = 4e-044
Identities = 78/93 (83%), Positives = 81/93 (87%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TMLQ RS A
Sbjct: 393 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNAL 214
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRPSSFLL RQL+ TWVLFLTLI+S DRG VLN
Sbjct: 213 TRPSSFLLFRQLISTWVLFLTLIMSRDRGAVLN 115
Score = 128 bits (275), Expect = 2e-029
Identities = 55/104 (52%), Positives = 70/104 (67%)
Frame = -3 / +1
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+ ER+GDVD G +DWQ Q+
Sbjct: 121 HRAPVPAHDERQEQYPGTYQLPEQQEATWSRESI*PSLQHGSGERSGDVD*GSKDWQRQE 300
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQVIAQPEARSLLKTVA 251
EG + EQG +HQQDVP RLGHH ++EP++I LK VA
Sbjct: 301 EGPSSEQGQVHQQDVPPRRLGHHCSKEPEMI*TATTPRTLKRVA 432
Score = 116 bits (249), Expect = 9e-026
Identities = 52/101 (51%), Positives = 71/101 (70%)
Frame = +1 / -2
Query: 283 VGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIK 462
+ +S VP ++DDRVA EEHLADE +LVH + LL A ASL +L PHLP+VL++HV + +K
Sbjct: 400 LSKSFRVP*NNDDRVAAEEHLADEPVLVHWKGLLLAFASLWNLSPHLPNVLQNHVAMTVK 221
Query: 463 STNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFL 585
++ K LLVV A+D+ LG+VL+ HH Q A+ L L L
Sbjct: 220 CSHATK*LLVVPAVDKYLGIVLDAHHEQGQGRGAELLLLLL 98
>gb|AL510410.1|AL510410 AL510410 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04N11u 3',
mRNA sequence
Length = 554
Score = 205 bits (443), Expect = 2e-052
Identities = 86/90 (95%), Positives = 88/90 (97%)
Frame = -1 / -3
Query: 561 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 382
TGPL +LM+SVKNNTQVLIN RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK
Sbjct: 507 TGPLXILMLSVKNNTQVLINXRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 328
Query: 381 KALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 327 KALPVNKDRFISKMFLRGDSVIIVLRNPK* 238
Score = 160 bits (345), Expect = 5e-039
Identities = 71/90 (78%), Positives = 74/90 (82%)
Frame = +2 / +2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 239 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 418
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPV 562
RPS+FLL R L+ TWVLFLTL + RGPV
Sbjct: 419 RPSNFLLFRXLISTWVLFLTLSMRMXRGPV 508
Score = 113 bits (241), Expect = 1e-024
Identities = 47/83 (56%), Positives = 59/83 (71%)
Frame = +1 / +1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 238 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 417
Query: 472 PAKQLLVVAAIDENLGVVLNTHH 540
KQLLVV +D++LGVVL+ H
Sbjct: 418 ATKQLLVVPXVDKHLGVVLDAEH 486
Score = 111 bits (238), Expect = 3e-024
Identities = 46/90 (51%), Positives = 59/90 (65%)
Frame = -3 / -2
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
H P + + EQHPG++QLP+QQE AW * L HG+RER GDVD G +DW Q+
Sbjct: 508 HGPPXHPHAQRQEQHPGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQE 329
Query: 382 EGSACEQG*IHQQDVPQGRLGHHRAEEPQV 293
EG EQG +H+QDVP GHHR +EP++
Sbjct: 328 EGPPGEQGQVHKQDVPPRGFGHHRPQEPEM 239
>gb|BE195373.2|BE195373 HVSMEh0089A22f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089A22f, mRNA sequence
Length = 958
Score = 180 bits (388), Expect(2) = 7e-050
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -1 / -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 337
QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF
Sbjct: 433 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 254
Query: 336 LRGDSVIIVLRNPK* 292
LRGDSVIIVLRNPK*
Sbjct: 253 LRGDSVIIVLRNPK* 209
Score = 143 bits (306), Expect(2) = 2e-035
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = +2 / +3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 210 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 389
Query: 473 RPSSFLLLRQLMRTW 517
RPS+FLL RQL+ TW
Sbjct: 390 RPSNFLLFRQLISTW 434
Score = 105 bits (224), Expect = 3e-022
Identities = 44/76 (57%), Positives = 55/76 (72%)
Frame = +1 / +2
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 209 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 388
Query: 472 PAKQLLVVAAIDENLG 519
KQLLVV A+D++LG
Sbjct: 389 ATKQLLVVPAVDKHLG 436
Score = 102 bits (217), Expect = 2e-021
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = -3 / -3
Query: 517 PGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQQDV 338
PG++QLP+QQE AW * L HG+RER GDVD G +DW Q+EG EQG +H+QDV
Sbjct: 434 PGAYQLPEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQGQVHKQDV 255
Query: 337 PQGRLGHHRAEEPQV 293
P GHHR +EP++
Sbjct: 254 PPRGFGHHRPQEPEM 210
Score = 36.8 bits (74), Expect(2) = 7e-050
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -1 / -3
Query: 567 FSTGPLSVLMMSVKNNT 517
FSTGPLS+LM+SVK NT
Sbjct: 485 FSTGPLSILMLSVKTNT 435
Score = 26.3 bits (51), Expect(2) = 2e-035
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2 / +1
Query: 518 VLFLTLIISTDRGPVLN 568
VL LTL + +RGPVLN
Sbjct: 436 VLVLTLSMRMERGPVLN 486
>gb|CA028862.1|CA028862 HZ63H11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63H11
5-PRIME, mRNA sequence
Length = 390
Score = 186 bits (400), Expect = 1e-046
Identities = 76/77 (98%), Positives = 77/77 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 159 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 338
Query: 387 KKKALPVNKDRFISKMF 337
KKKALPVNKDRFISKMF
Sbjct: 339 KKKALPVNKDRFISKMF 389
Score = 152 bits (327), Expect = 2e-036
Identities = 67/77 (87%), Positives = 69/77 (89%)
Frame = +2 / -3
Query: 338 NILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTW 517
NILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TMLQ RS A TRPSSFLL RQL+ TW
Sbjct: 388 NILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTMLQ*RSNALTRPSSFLLFRQLISTW 209
Query: 518 VLFLTLIISTDRGPVLN 568
VLFLTLI+S DRGPVLN
Sbjct: 208 VLFLTLIMSRDRGPVLN 158
Score = 105 bits (224), Expect = 3e-022
Identities = 43/75 (57%), Positives = 54/75 (72%)
Frame = -3 / +2
Query: 562 HRPSVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQK 383
HR V +DE EQ+PG++QLP+QQEA W * L HG+RER+GDVD G +DWQ Q+
Sbjct: 164 HRAPVPAHDERQEQYPGTYQLPEQQEATWSRESI*PSLQHGSRERSGDVD*GSKDWQRQE 343
Query: 382 EGSACEQG*IHQQDV 338
EG + EQG +HQQDV
Sbjct: 344 EGPSSEQGQVHQQDV 388
>gb|CA001262.1|CA001262 HS18J05u HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
3-PRIME, mRNA sequence
Length = 492
Score = 176 bits (379), Expect = 1e-043
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1 / -2
Query: 510 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 331
LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 491 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 312
Query: 330 GDSVIIVLRNPK* 292
GDSVIIVLRNPK*
Sbjct: 311 GDSVIIVLRNPK* 273
Score = 136 bits (291), Expect = 1e-031
Identities = 60/72 (83%), Positives = 62/72 (86%)
Frame = +2 / +1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 274 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 453
Query: 473 RPSSFLLLRQLM 508
RPS+FLL RQL+
Sbjct: 454 RPSNFLLFRQLI 489
Score = 100 bits (213), Expect = 8e-021
Identities = 42/73 (57%), Positives = 52/73 (71%)
Frame = +1 / +3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 273 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 452
Query: 472 PAKQLLVVAAIDE 510
KQLLVV A+D+
Sbjct: 453 ATKQLLVVPAVDK 491
>gb|CA010137.1|CA010137 HT11K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
3-PRIME, mRNA sequence
Length = 474
Score = 170 bits (366), Expect = 7e-042
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = -1 / -1
Query: 504 NCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGD 325
+CRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGD
Sbjct: 465 DCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGD 286
Query: 324 SVIIVLRNPK* 292
SVIIVLRNPK*
Sbjct: 285 SVIIVLRNPK* 253
Score = 133 bits (286), Expect = 7e-031
Identities = 59/70 (84%), Positives = 60/70 (85%)
Frame = +2 / +2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 254 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 433
Query: 473 RPSSFLLLRQ 502
RPS+FLL RQ
Sbjct: 434 RPSNFLLFRQ 463
>gb|AL511843.1|AL511843 AL511843 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09H01u 3',
mRNA sequence
Length = 540
Score = 168 bits (362), Expect = 2e-041
Identities = 72/88 (81%), Positives = 75/88 (85%)
Frame = -1 / -3
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL + + + L RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA
Sbjct: 508 PLPSSCSASRTTPRCLSTARNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 329
Query: 375 LPVNKDRFISKMFLRGDSVIIVLRNPK* 292
LPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 328 LPVNKDRFISKMFLRGDSVIIVLRNPK* 245
Score = 131 bits (281), Expect(2) = 2e-032
Identities = 58/69 (84%), Positives = 59/69 (85%)
Frame = +2 / +3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ RS A T
Sbjct: 246 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ*RSNALT 425
Query: 473 RPSSFLLLR 499
RPS+FLL R
Sbjct: 426 RPSNFLLFR 452
Score = 94.5 bits (200), Expect(2) = 8e-021
Identities = 40/68 (58%), Positives = 48/68 (70%)
Frame = +1 / +2
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+ DDDR+ EEHLA E +LVHR+ LL A SL +L PHLP VLE+HV V +K +
Sbjct: 245 SFRVPEDDDDRIPAEEHLAYEPVLVHREGLLLAFTSLWNLSPHLPDVLENHVAVTVKCPH 424
Query: 472 PAKQLLVV 495
KQLLVV
Sbjct: 425 ATKQLLVV 448
Score = 90.9 bits (192), Expect(2) = 4e-024
Identities = 37/69 (53%), Positives = 46/69 (66%)
Frame = -3 / -2
Query: 499 PQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQG*IHQQDVPQGRLG 320
P+QQE AW * L HG+RER GDVD G +DW Q+EG EQG +H+QDVP G
Sbjct: 452 PEQQEVAWSREGI*PSLQHGSRERQGDVD*GSKDW*RQEEGPPGEQGQVHKQDVPPRGFG 273
Query: 319 HHRAEEPQV 293
HHR +EP++
Sbjct: 272 HHRPQEPEM 246
Score = 40.0 bits (81), Expect(2) = 4e-024
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -1 / -2
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKL 481
P +LM+SVKNNTQVLINC +++
Sbjct: 509 PSPILMLSVKNNTQVLINCPEQQEV 435
Score = 27.6 bits (54), Expect(2) = 2e-032
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2 / +1
Query: 500 QLMRTWVLFLTLIISTDRG 556
QL+ TWVLFLTL + G
Sbjct: 454 QLISTWVLFLTLSMRMGEG 510
Score = 25.4 bits (49), Expect(2) = 8e-021
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1 / +3
Query: 487 LVVAAIDENLGVVLNTHH 540
L+ A+D++LGVVL+ H
Sbjct: 441 LLFRAVDKHLGVVLDAEH 494
>gb|CA014548.1|CA014548 HT11K12r HT Hordeum vulgare subsp. vulgare cDNA clone HT11K12
5-PRIME, mRNA sequence
Length = 474
Score = 128 bits (274), Expect(2) = 6e-036
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -1 / +3
Query: 453 HCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+CNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 60 YCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 221
Score = 110 bits (235), Expect(2) = 1e-026
Identities = 47/54 (87%), Positives = 48/54 (88%)
Frame = +2 / -3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQW 454
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ+
Sbjct: 220 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQY 59
Score = 42.3 bits (86), Expect(2) = 6e-036
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -1 / +1
Query: 504 NCRNNKKLLGRVRAFDR 454
+CRNNKKLLGRVRAFDR
Sbjct: 10 DCRNNKKLLGRVRAFDR 60
Score = 29.0 bits (57), Expect(2) = 1e-026
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / -2
Query: 455 RSKARTRPSSFLLLRQ 502
RS A TRPS+FLL RQ
Sbjct: 59 RSNALTRPSNFLLFRQ 12
>gb|CA004752.1|CA004752 HS18J05r HS Hordeum vulgare subsp. vulgare cDNA clone HS18J05
5-PRIME, mRNA sequence
Length = 376
Score = 146 bits (313), Expect = 1e-034
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 197 FSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 376
Score = 103 bits (219), Expect = 1e-021
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = +2 / -2
Query: 389 PLPVLGTSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
PLPV GTSVHIS TFS TMLQ RS A TRPS+FLL RQL+ TWVLFLTL + +RGPVLN
Sbjct: 375 PLPVFGTSVHISLTFSRTMLQ*RSNALTRPSNFLLFRQLISTWVLFLTLSMRMERGPVLN 196
>gb|BM374705.1|BM374705 EBma05_SQ002_I15_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_I15 5', mRNA sequence
Length = 393
Score = 131 bits (280), Expect = 5e-030
Identities = 54/54 (100%), Positives = 54/54 (100%)
Frame = -1 / +1
Query: 453 HCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
HCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1 HCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 162
Score = 109 bits (233), Expect = 1e-023
Identities = 47/53 (88%), Positives = 47/53 (88%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQ 451
H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQ
Sbjct: 161 HFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQ 3
>gb|AV925110.1|AV925110 AV925110 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21j01 5', mRNA sequence
Length = 513
Score = 127 bits (273), Expect = 4e-029
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 409
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMWTE
Sbjct: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513
>gb|BJ468792.1|BJ468792 BJ468792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27e17 5', mRNA sequence
Length = 499
Score = 123 bits (263), Expect = 1e-027
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 415
FSTGPLS+LMMSVKNNTQVLINCRNNKKLLGR+RAFDRHCNMVLENVREMW
Sbjct: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497
>gb|CA025713.1|CA025713 HZ52P01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52P01
5-PRIME, mRNA sequence
Length = 396
Score = 123 bits (263), Expect = 1e-027
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = -1 / +1
Query: 447 NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 13 NMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 168
Score = 111 bits (236), Expect = 6e-024
Identities = 47/53 (88%), Positives = 48/53 (90%)
Frame = +2 / -2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTML 448
+H GFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHISRTFS TML
Sbjct: 170 NHFGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISRTFSRTML 12
>gb|BI951216.1|BI951216 HVSMEl0025B11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025B11f, mRNA sequence
Length = 406
Score = 114 bits (244), Expect = 4e-025
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = -1 / +1
Query: 435 ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1 ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 144
Score = 101 bits (216), Expect = 3e-021
Identities = 43/48 (89%), Positives = 44/48 (91%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTF 433
+HLGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TF
Sbjct: 146 NHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTF 3
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 328,440,539
Number of Sequences: 312970
Number of extensions: 5107490
Number of successful extensions: 58715
Number of sequences better than 1.0e-020: 44
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7507757493
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)