TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV832793.1|AV832793 AV832793 K. Sato unpublished cDNA li... 136 1e-048
gb|BJ471371.1|BJ471371 BJ471371 K. Sato unpublished cDNA li... 136 1e-048
gb|BJ472893.1|BJ472893 BJ472893 K. Sato unpublished cDNA li... 136 1e-048
gb|BJ469905.1|BJ469905 BJ469905 K. Sato unpublished cDNA li... 136 1e-048
gb|CK123222.1|CK123222 BES1824102k18 BES1824 Hordeum vulgar... 136 3e-048
gb|AL503348.1|AL503348 AL503348 Hordeum vulgare Barke roots... 103 2e-043
gb|BF256291.2|BF256291 HVSMEf0009M08f Hordeum vulgare seedl... 130 2e-042
gb|AL504356.1|AL504356 AL504356 Hordeum vulgare Barke roots... 92 4e-040
gb|BU983309.1|BU983309 HA29E11r HA Hordeum vulgare subsp. v... 86 1e-033
gb|BU983241.1|BU983241 HA29A09r HA Hordeum vulgare subsp. v... 86 1e-033
gb|CK124938.1|CK124938 BES1824111A1g10 BES1824 Hordeum vulg... 83 2e-032
gb|BI956615.1|BI956615 HVSMEn0004H12f Hordeum vulgare rachi... 92 2e-031
gb|BG367937.2|BG367937 HVSMEi0014N17f Hordeum vulgare 20 DA... 125 2e-028
gb|BQ468692.1|BQ468692 HM01P22T HM Hordeum vulgare subsp. v... 63 9e-019
gb|BQ661118.1|BQ661118 HM01P22w HM Hordeum vulgare subsp. v... 63 1e-018
gb|BU983263.1|BU983263 HA29B23r HA Hordeum vulgare subsp. v... 76 2e-017
gb|BF255595.3|BF255595 HVSMEf0007E14f Hordeum vulgare seedl... 78 5e-014
gb|BU977196.1|BU977196 HA11A01r HA Hordeum vulgare subsp. v... 77 1e-013
gb|BU979164.1|BU979164 HA15F11r HA Hordeum vulgare subsp. v... 76 1e-013
gb|BU982047.1|BU982047 HA25F24r HA Hordeum vulgare subsp. v... 70 9e-012
gb|CA018434.1|CA018434 HV08J20r HV Hordeum vulgare subsp. v... 70 9e-012
gb|BF254537.2|BF254537 HVSMEf0004E22f Hordeum vulgare seedl... 51 7e-006
gb|AV836393.1|AV836393 AV836393 K. Sato unpublished cDNA li... 41 0.006
gb|AV834232.1|AV834232 AV834232 K. Sato unpublished cDNA li... 33 1.3
gb|AV836641.1|AV836641 AV836641 K. Sato unpublished cDNA li... 33 1.3
gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 33 1.3
gb|BU972447.1|BU972447 HB21K18r BC Hordeum vulgare subsp. v... 33 1.8
gb|CA013759.1|CA013759 HT09G12r HT Hordeum vulgare subsp. v... 33 1.8
gb|BG344879.1|BG344879 HVSMEg0016K10f Hordeum vulgare pre-a... 32 2.4
gb|AV909712.1|AV909712 AV909712 K. Sato unpublished cDNA li... 32 2.4
gb|BJ450377.1|BJ450377 BJ450377 K. Sato unpublished cDNA li... 32 2.4
gb|BJ457795.1|BJ457795 BJ457795 K. Sato unpublished cDNA li... 32 2.4
gb|BQ461186.1|BQ461186 HE01P20r HE Hordeum vulgare subsp. v... 29 4.4
gb|BI949026.1|BI949026 HVSMEl0012B08f Hordeum vulgare spike... 31 4.6
gb|BQ461044.1|BQ461044 HE01G01r HE Hordeum vulgare subsp. v... 29 6.2
gb|BF630681.2|BF630681 HVSMEb0012O24f Hordeum vulgare seedl... 31 6.3
gb|BE195440.3|BE195440 HVSMEh0089K10f Hordeum vulgare 5-45 ... 31 6.3
gb|CA028817.1|CA028817 HZ63F10r HZ Hordeum vulgare subsp. v... 29 6.5
gb|CB877821.1|CB877821 HP06F02T HP Hordeum vulgare subsp. v... 29 7.1
gb|BM374145.1|BM374145 EBma03_SQ003_M10_R maternal, 8 DPA, ... 23 7.5
gb|BE193860.2|BE193860 HVSMEh0082L16f Hordeum vulgare 5-45 ... 30 8.7
gb|BG416324.2|BG416324 HVSMEk0011G03f Hordeum vulgare testa... 30 8.7
gb|BG414590.1|BG414590 HVSMEk0003A02f Hordeum vulgare testa... 25 9.2
>gb|AV832793.1|AV832793 AV832793 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal6a14, mRNA
sequence
Length = 659
Score = 136 bits (292), Expect(2) = 1e-048
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F G+LQNYYMY GGTNF R++GGP TSYDYDAPIDEYG++RQPKWGHL+D
Sbjct: 170 FAVARFYQRGGTLQNYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLRD 349
Query: 221 LHAAIKLCESALTAVDGS 274
+H AIK+CE AL A D S
Sbjct: 350 VHKAIKMCEPALIATDPS 403
Score = 88.6 bits (187), Expect(3) = 1e-024
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A S IA S K PH GCL PYSS+GAS*S*LV +GPP +R KLVPP YM*
Sbjct: 396 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S*LVDMNGPPELRPKLVPPWYM* 217
Query: 87 *FCKLP 70
*FC++P
Sbjct: 216 *FCRVP 199
Score = 76.2 bits (160), Expect(2) = 1e-048
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +2
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 404 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 583
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 584 TAQINSQVA 610
Score = 43.7 bits (89), Expect(2) = 7e-006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++P+RP +D AFAVARFYQRG
Sbjct: 131 GGAVPYRPTEDLAFAVARFYQRG 199
Score = 36.3 bits (73), Expect(3) = 1e-024
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -3
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 588 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 463
Score = 26.7 bits (52), Expect(2) = 7e-006
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +2
Query: 275 PHYVKLGPMQEAHVYSS 325
P Y+ LG EAHVY S
Sbjct: 398 PSYMSLGQNAEAHVYKS 448
Score = 25.4 bits (49), Expect(3) = 1e-024
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3 / -3
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR *KRATAKA S G G P
Sbjct: 198 PRW*KRATAKARSSVGR*GTAPP 130
>gb|BJ471371.1|BJ471371 BJ471371 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18a18 5', mRNA sequence
Length = 646
Score = 136 bits (292), Expect(2) = 1e-048
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F G+LQNYYMY GGTNF R++GGP TSYDYDAPIDEYG++RQPKWGHL+D
Sbjct: 140 FAVARFYQRGGTLQNYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLRD 319
Query: 221 LHAAIKLCESALTAVDGS 274
+H AIK+CE AL A D S
Sbjct: 320 VHKAIKMCEPALIATDPS 373
Score = 88.6 bits (187), Expect(3) = 1e-024
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A S IA S K PH GCL PYSS+GAS*S*LV +GPP +R KLVPP YM*
Sbjct: 366 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S*LVDMNGPPELRPKLVPPWYM* 187
Query: 87 *FCKLP 70
*FC++P
Sbjct: 186 *FCRVP 169
Score = 76.2 bits (160), Expect(2) = 1e-048
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +2
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 374 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 553
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 554 TAQINSQVA 580
Score = 43.7 bits (89), Expect(2) = 6e-006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++P+RP +D AFAVARFYQRG
Sbjct: 101 GGAVPYRPTEDLAFAVARFYQRG 169
Score = 36.3 bits (73), Expect(3) = 1e-024
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 558 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 433
Score = 26.7 bits (52), Expect(2) = 6e-006
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +2
Query: 275 PHYVKLGPMQEAHVYSS 325
P Y+ LG EAHVY S
Sbjct: 368 PSYMSLGQNAEAHVYKS 418
Score = 25.4 bits (49), Expect(3) = 1e-024
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3 / -2
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR *KRATAKA S G G P
Sbjct: 168 PRW*KRATAKARSSVGR*GTAPP 100
>gb|BJ472893.1|BJ472893 BJ472893 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal39j21 5', mRNA sequence
Length = 636
Score = 136 bits (292), Expect(2) = 1e-048
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = +2 / +3
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F G+LQNYYMY GGTNF R++GGP TSYDYDAPIDEYG++RQPKWGHL+D
Sbjct: 150 FAVARFYQRGGTLQNYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLRD 329
Query: 221 LHAAIKLCESALTAVDGS 274
+H AIK+CE AL A D S
Sbjct: 330 VHKAIKMCEPALIATDPS 383
Score = 88.6 bits (187), Expect(3) = 1e-024
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A S IA S K PH GCL PYSS+GAS*S*LV +GPP +R KLVPP YM*
Sbjct: 376 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S*LVDMNGPPELRPKLVPPWYM* 197
Query: 87 *FCKLP 70
*FC++P
Sbjct: 196 *FCRVP 179
Score = 76.2 bits (160), Expect(2) = 1e-048
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +3
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 384 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 563
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 564 TAQINSQVA 590
Score = 43.7 bits (89), Expect(2) = 6e-006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++P+RP +D AFAVARFYQRG
Sbjct: 111 GGAVPYRPTEDLAFAVARFYQRG 179
Score = 36.3 bits (73), Expect(3) = 1e-024
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -3
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 568 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 443
Score = 26.7 bits (52), Expect(2) = 6e-006
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +3
Query: 275 PHYVKLGPMQEAHVYSS 325
P Y+ LG EAHVY S
Sbjct: 378 PSYMSLGQNAEAHVYKS 428
Score = 25.4 bits (49), Expect(3) = 1e-024
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3 / -3
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR *KRATAKA S G G P
Sbjct: 178 PRW*KRATAKARSSVGR*GTAPP 110
>gb|BJ469905.1|BJ469905 BJ469905 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14d05 5', mRNA sequence
Length = 617
Score = 136 bits (292), Expect(2) = 1e-048
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = +2 / +3
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F G+LQNYYMY GGTNF R++GGP TSYDYDAPIDEYG++RQPKWGHL+D
Sbjct: 162 FAVARFYQRGGTLQNYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLRD 341
Query: 221 LHAAIKLCESALTAVDGS 274
+H AIK+CE AL A D S
Sbjct: 342 VHKAIKMCEPALIATDPS 395
Score = 88.6 bits (187), Expect(3) = 1e-024
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A S IA S K PH GCL PYSS+GAS*S*LV +GPP +R KLVPP YM*
Sbjct: 388 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S*LVDMNGPPELRPKLVPPWYM* 209
Query: 87 *FCKLP 70
*FC++P
Sbjct: 208 *FCRVP 191
Score = 76.2 bits (160), Expect(2) = 1e-048
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +3
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 396 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 575
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 576 TAQINSQVA 602
Score = 43.7 bits (89), Expect(2) = 6e-006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++P+RP +D AFAVARFYQRG
Sbjct: 123 GGAVPYRPTEDLAFAVARFYQRG 191
Score = 36.3 bits (73), Expect(3) = 1e-024
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 580 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 455
Score = 26.7 bits (52), Expect(2) = 6e-006
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +3
Query: 275 PHYVKLGPMQEAHVYSS 325
P Y+ LG EAHVY S
Sbjct: 390 PSYMSLGQNAEAHVYKS 440
Score = 25.4 bits (49), Expect(3) = 1e-024
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3 / -2
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR *KRATAKA S G G P
Sbjct: 190 PRW*KRATAKARSSVGR*GTAPP 122
>gb|CK123222.1|CK123222 BES1824102k18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K182 5-PRIME, mRNA sequence
Length = 758
Score = 136 bits (292), Expect(2) = 3e-048
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = +2 / +3
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F G+LQNYYMY GGTNF R++GGP TSYDYDAPIDEYG++RQPKWGHL+D
Sbjct: 282 FAVARFYQRGGTLQNYYMYHGGTNFGRSSGGPFISTSYDYDAPIDEYGLVRQPKWGHLRD 461
Query: 221 LHAAIKLCESALTAVDGS 274
+H AIK+CE AL A D S
Sbjct: 462 VHKAIKMCEPALIATDPS 515
Score = 88.6 bits (187), Expect(3) = 4e-024
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A S IA S K PH GCL PYSS+GAS*S*LV +GPP +R KLVPP YM*
Sbjct: 508 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S*LVDMNGPPELRPKLVPPWYM* 329
Query: 87 *FCKLP 70
*FC++P
Sbjct: 328 *FCRVP 311
Score = 74.8 bits (157), Expect(2) = 3e-048
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +2 / +3
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 516 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 695
Query: 497 TARVGTQTSXFNVESGSPSYS 559
T ++ +Q + + +S
Sbjct: 696 TXQINSQVASTQMRXPGVQHS 758
Score = 43.7 bits (89), Expect(2) = 8e-006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++P+RP +D AFAVARFYQRG
Sbjct: 243 GGAVPYRPTEDLAFAVARFYQRG 311
Score = 34.5 bits (69), Expect(3) = 4e-024
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = -1 / -2
Query: 498 VLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
VL T QSG MLTDH G L P T SS+ AR A
Sbjct: 697 VLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 575
Score = 26.7 bits (52), Expect(2) = 8e-006
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +3
Query: 275 PHYVKLGPMQEAHVYSS 325
P Y+ LG EAHVY S
Sbjct: 510 PSYMSLGQNAEAHVYKS 560
Score = 25.4 bits (49), Expect(3) = 4e-024
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3 / -2
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR *KRATAKA S G G P
Sbjct: 310 PRW*KRATAKARSSVGR*GTAPP 242
>gb|AL503348.1|AL503348 AL503348 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01L22T 5', mRNA sequence
Length = 700
Score = 103 bits (219), Expect(3) = 2e-043
Identities = 39/53 (73%), Positives = 45/53 (84%)
Frame = +2 / +1
Query: 110 NFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
NF RTAGGP TSYDYDAP+DEYG+ R+PK+GHLK+LH AIKLCE AL +VD
Sbjct: 4 NFGRTAGGPFITTSYDYDAPLDEYGLAREPKYGHLKELHKAIKLCEQALVSVD 162
Score = 82.2 bits (173), Expect(3) = 2e-043
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + +A + + YSLPPWS+SILPDC+TV +NTA VG QTS + S
Sbjct: 223 CAAFLANYNSNSHAKIVFDNEHYSLPPWSISILPDCKTVVYNTATVGVQTSQMQMWSDGA 402
Query: 551 S 553
S
Sbjct: 403 S 405
Score = 64.3 bits (134), Expect(2) = 3e-016
Identities = 31/52 (59%), Positives = 35/52 (67%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSK 112
ST A S +LIA S +CP+ G L PYSS GAS*S*LV+ GPPAVR K
Sbjct: 161 STETNACSHNLIAL*SSLRCPYFGSLASPYSSSGAS*S*LVVMKGPPAVRPK 6
Score = 41.4 bits (84), Expect(2) = 3e-016
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -1 / -3
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL* 436
DV PT+AVL TV QSG ML D GGRL*
Sbjct: 374 DV*TPTVAVL*TTVLQSGRMLIDQGGRL* 288
Score = 28.1 bits (55), Expect(3) = 2e-043
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHVY S
Sbjct: 151 VSVDPTVTSLGSMQEAHVYRS 213
>gb|BF256291.2|BF256291 HVSMEf0009M08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009M08f, mRNA sequence
Length = 779
Score = 130 bits (279), Expect(2) = 2e-042
Identities = 50/71 (70%), Positives = 56/71 (78%)
Frame = +2 / +3
Query: 56 FLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAI 235
F+ GS NYYMY GGTNF+RTAGGP TSYDYDAPIDEYG++RQPKWGHL+DLH AI
Sbjct: 12 FIQKGGSFVNYYMYHGGTNFDRTAGGPFIATSYDYDAPIDEYGLIRQPKWGHLRDLHKAI 191
Query: 236 KLCESALTAVD 268
K E AL + D
Sbjct: 192 KQAEPALVSGD 224
Score = 89.5 bits (189), Expect(2) = 3e-020
Identities = 43/66 (65%), Positives = 46/66 (69%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A S L+A CRS + PH GCL PYSSIGAS*S*LV +GPPAVRSK VPP YM*
Sbjct: 223 SPETSAGSACLMALCRSLRWPHFGCLIRPYSSIGAS*S*LVAMNGPPAVRSKFVPPWYM* 44
Query: 87 *FCKLP 70
* K P
Sbjct: 43 *LTKEP 26
Score = 61.6 bits (128), Expect(2) = 2e-042
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +2 / +3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTA 502
C+AFL+N A + G+ Y LP WS+SILPDC+T FNTA
Sbjct: 288 CAAFLSNYHTSSAARIVYNGRGYDLPAWSISILPDCKTAVFNTA 419
Score = 32.2 bits (64), Expect = 2.4
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = -3 / -1
Query: 214 QMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
Q+ P RL T+FV+ ++++A + P+++ ++ +HV++
Sbjct: 170 QVAPFRLPDQTVFVDRGVVVVARRDERAAGGPVEVCASMVHVVV 39
Score = 29.9 bits (59), Expect(2) = 3e-020
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1 / -2
Query: 504 LAVLKATVSQSGSMLTDHGGR 442
+AVLK V QSG ML D GR
Sbjct: 421 VAVLKTAVLQSGRMLMDQAGR 359
>gb|AL504356.1|AL504356 AL504356 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05A11V 5', mRNA sequence
Length = 662
Score = 92.3 bits (195), Expect(3) = 4e-040
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = +2 / +2
Query: 128 GGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
GGP TSYDYDAP+DEYG+ R+PK+GHLK+LH AIKLCE AL +VD
Sbjct: 2 GGPFITTSYDYDAPLDEYGLAREPKYGHLKELHKAIKLCEQALVSVD 142
Score = 82.2 bits (173), Expect(3) = 4e-040
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + +A + + YSLPPWS+SILPDC+TV +NTA VG QTS + S
Sbjct: 203 CAAFLANYNSNSHAKIVFDNEHYSLPPWSISILPDCKTVVYNTATVGVQTSQMQMWSDGA 382
Query: 551 S 553
S
Sbjct: 383 S 385
Score = 56.5 bits (117), Expect(2) = 6e-014
Identities = 27/47 (57%), Positives = 31/47 (65%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPP 127
ST A S +LIA S +CP+ G L PYSS GAS*S*LV+ GPP
Sbjct: 141 STETNACSHNLIAL*SSLRCPYFGSLASPYSSSGAS*S*LVVMKGPP 1
Score = 41.4 bits (84), Expect(2) = 6e-014
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -1 / -3
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL* 436
DV PT+AVL TV QSG ML D GGRL*
Sbjct: 354 DV*TPTVAVL*TTVLQSGRMLIDQGGRL* 268
Score = 28.1 bits (55), Expect(3) = 4e-040
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHVY S
Sbjct: 131 VSVDPTVTSLGSMQEAHVYRS 193
>gb|BU983309.1|BU983309 HA29E11r HA Hordeum vulgare subsp. vulgare cDNA clone HA29E11
5-PRIME, mRNA sequence
Length = 653
Score = 86.3 bits (182), Expect(2) = 1e-033
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +2 / +3
Query: 152 YDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
YDYDAPIDEYG++RQPKWGHL+D+H AIK+CE AL A D S
Sbjct: 3 YDYDAPIDEYGLVRQPKWGHLRDVHKAIKMCEPALIATDPS 125
Score = 76.2 bits (160), Expect(2) = 1e-033
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +3
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 126 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 305
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 306 TAQINSQVA 332
Score = 47.8 bits (98), Expect(2) = 2e-010
Identities = 23/39 (58%), Positives = 25/39 (64%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S* 151
S A+ A S IA S K PH GCL PYSS+GAS*S*
Sbjct: 118 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S* 2
Score = 36.3 bits (73), Expect(2) = 2e-010
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 310 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 185
>gb|BU983241.1|BU983241 HA29A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA29A09
5-PRIME, mRNA sequence
Length = 535
Score = 86.3 bits (182), Expect(2) = 1e-033
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +2 / +3
Query: 152 YDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
YDYDAPIDEYG++RQPKWGHL+D+H AIK+CE AL A D S
Sbjct: 3 YDYDAPIDEYGLVRQPKWGHLRDVHKAIKMCEPALIATDPS 125
Score = 76.2 bits (160), Expect(2) = 1e-033
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +3
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 126 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 305
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 306 TAQINSQVA 332
Score = 47.8 bits (98), Expect(2) = 2e-010
Identities = 23/39 (58%), Positives = 25/39 (64%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S* 151
S A+ A S IA S K PH GCL PYSS+GAS*S*
Sbjct: 118 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS*S* 2
Score = 36.3 bits (73), Expect(2) = 2e-010
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 310 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 185
>gb|CK124938.1|CK124938 BES1824111A1g10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G1011 5-PRIME, mRNA sequence
Length = 840
Score = 83.1 bits (175), Expect(2) = 2e-032
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +2 / +1
Query: 155 DYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
DYDAPIDEYG++RQPKWGHL+D+H AIK+CE AL A D S
Sbjct: 1 DYDAPIDEYGLVRQPKWGHLRDVHKAIKMCEPALIATDPS 120
Score = 75.3 bits (158), Expect(2) = 2e-032
Identities = 30/69 (43%), Positives = 41/69 (59%)
Frame = +2 / +1
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 121 YMSLGQNAEAHVYKSGSLCPAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 300
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 301 TAQINSQVA 327
Score = 45.5 bits (93), Expect(2) = 1e-009
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS* 157
S A+ A S IA S K PH GCL PYSS+GAS*
Sbjct: 113 SVAMSAGSHIFIALWTSLKWPHFGCLTSPYSSMGAS* 3
Score = 36.3 bits (73), Expect(2) = 1e-009
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 305 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 180
>gb|BI956615.1|BI956615 HVSMEn0004H12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004H12f, mRNA sequence
Length = 823
Score = 92.3 bits (195), Expect(2) = 2e-031
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = +2 / +3
Query: 122 TAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
TAGGP TSYDYDAPIDEYG++RQPKWGHL+DLH AIK E AL + D
Sbjct: 3 TAGGPWVGTSYDYDAPIDEYGLIRQPKWGHLRDLHKAIKQAEPALVSGD 149
Score = 64.3 bits (134), Expect(2) = 2e-013
Identities = 31/49 (63%), Positives = 33/49 (67%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAV 121
S A S L+A CRS + PH GCL PYSSIGAS*S*LV GPPAV
Sbjct: 148 SPETSAGSACLMALCRSLRWPHFGCLIRPYSSIGAS*S*LVPTHGPPAV 2
Score = 63.4 bits (132), Expect(2) = 2e-031
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +2 / +3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFL+N A + G+ Y LP WS+SILPDC+T FNTA V T+
Sbjct: 213 CAAFLSNYHTSSAARIVYNGRRYDLPAWSISILPDCKTAVFNTATVKEPTA 365
Score = 32.2 bits (64), Expect(2) = 2e-013
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1 / -1
Query: 507 TLAVLKATVSQSGSMLTDHGGR 442
T+AVLK V QSG ML D GR
Sbjct: 349 TVAVLKTAVLQSGRMLMDQAGR 284
>gb|BG367937.2|BG367937 HVSMEi0014N17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0014N17f, mRNA sequence
Length = 849
Score = 125 bits (267), Expect = 2e-028
Identities = 49/76 (64%), Positives = 55/76 (72%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F+ GS NYYMY GGTNF+RTAGGP TSYDYDAPIDEYG++RQ KWGHL+D
Sbjct: 197 FAVARFIQKGGSFVNYYMYHGGTNFDRTAGGPFIATSYDYDAPIDEYGLIRQTKWGHLRD 376
Query: 221 LHAAIKLCESALTAVD 268
LH AIK + AL D
Sbjct: 377 LHKAIKHAKPALVYGD 424
Score = 83.1 bits (175), Expect(2) = 1e-016
Identities = 39/56 (69%), Positives = 42/56 (75%)
Frame = -1 / -1
Query: 237 LIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM**FCKLP 70
L+A CRS + PH CL PYSSIGAS*S*LV +GPPAVRSK VPP YM** K P
Sbjct: 393 LMALCRSLRWPHFVCLISPYSSIGAS*S*LVAMNGPPAVRSKFVPPWYM**LTKEP 226
Score = 41.8 bits (85), Expect = 0.003
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G +PHRP +D AFAVARF Q+G ++
Sbjct: 158 GGPVPHRPVEDMAFAVARFIQKGGSF 235
Score = 30.4 bits (60), Expect = 8.7
Identities = 12/52 (23%), Positives = 30/52 (57%)
Frame = -3 / -3
Query: 238 FNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
FN + V Q+ P L ++FV+ ++++A + P+++ ++ +HV++
Sbjct: 394 FNGLVQVPQVAPFCLPDQSVFVDRGVVVVARRDERAAGGPVEVCASMVHVVV 239
Score = 22.6 bits (43), Expect(2) = 1e-016
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 52 ATAKALS*AGLCGNDSP 2
ATA A+S G CG P
Sbjct: 207 ATANAMSSTGRCGTGPP 157
>gb|BQ468692.1|BQ468692 HM01P22T HM Hordeum vulgare subsp. vulgare cDNA clone HM01P22
5-PRIME, mRNA sequence
Length = 495
Score = 63.4 bits (132), Expect(2) = 9e-019
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2 / +2
Query: 89 YMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESAL 256
Y + G G + Y +AP+DE+G+ ++PKWGHL+DLH A++LC+ AL
Sbjct: 8 YYMYHGGTNFGRTGASFVMPRYYDEAPLDEFGMYKEPKWGHLRDLHHALRLCKKAL 175
Score = 49.2 bits (101), Expect(2) = 9e-019
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQ 517
C AFL+N + + +V G+ Y +P SVSIL DC+TV F+T V Q
Sbjct: 254 CVAFLSNHNTKEDGTVTFRGQQYFVPRRSVSILADCKTVVFSTQHVNAQ 400
Score = 40.5 bits (82), Expect(2) = 0.001
Identities = 20/32 (62%), Positives = 21/32 (65%)
Frame = -1 / -1
Query: 255 RADSQSLIAACRSFKCPHLGCLKIPYSSIGAS 160
RA SL A CRS + PHLG L IP SS GAS
Sbjct: 174 RAFLHSLRAWCRSLRWPHLGSLYIPNSSRGAS 79
Score = 35.9 bits (72), Expect = 0.19
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2 / +2
Query: 83 NYYMYFGGTNFERTAGGPLQITSYD 157
NYYMY GGTNF RT + YD
Sbjct: 5 NYYMYHGGTNFGRTGASFVMPRYYD 79
Score = 21.7 bits (41), Expect(2) = 0.001
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / -1
Query: 123 VRSKLVPPKYM**F 82
V K VPP YM**F
Sbjct: 45 VLPKFVPPWYM**F 4
>gb|BQ661118.1|BQ661118 HM01P22w HM Hordeum vulgare subsp. vulgare cDNA clone HM01P22
3-PRIME, mRNA sequence
Length = 489
Score = 62.9 bits (131), Expect(2) = 1e-018
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +2 / -1
Query: 128 GGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESAL 256
G + Y +AP+DE+G+ ++PKWGHL+DLH A++LC+ AL
Sbjct: 474 GASFVMPRYYDEAPLDEFGMYKEPKWGHLRDLHHALRLCKKAL 346
Score = 49.2 bits (101), Expect(2) = 1e-018
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +2 / -1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQ 517
C AFL+N + + +V G+ Y +P SVSIL DC+TV F+T V Q
Sbjct: 267 CVAFLSNHNTKEDGTVTFRGQQYFVPRRSVSILADCKTVVFSTQHVNAQ 121
Score = 40.5 bits (82), Expect = 0.008
Identities = 20/32 (62%), Positives = 21/32 (65%)
Frame = -1 / +2
Query: 255 RADSQSLIAACRSFKCPHLGCLKIPYSSIGAS 160
RA SL A CRS + PHLG L IP SS GAS
Sbjct: 347 RAFLHSLRAWCRSLRWPHLGSLYIPNSSRGAS 442
>gb|BU983263.1|BU983263 HA29B23r HA Hordeum vulgare subsp. vulgare cDNA clone HA29B23
5-PRIME, mRNA sequence
Length = 476
Score = 76.2 bits (160), Expect(2) = 2e-017
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +2
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 62 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 241
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 242 TAQINSQVA 268
Score = 36.3 bits (73), Expect = 0.14
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -3
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 246 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 121
Score = 31.8 bits (63), Expect(2) = 2e-017
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2 / +2
Query: 215 KDLHAAIKLCESALTAVDGS 274
+D+H AIK+CE AL A D S
Sbjct: 2 RDVHKAIKMCEPALIATDPS 61
>gb|BF255595.3|BF255595 HVSMEf0007E14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007E14f, mRNA sequence
Length = 891
Score = 77.6 bits (163), Expect = 5e-014
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +2 / +3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + A + + YSLPPWS+SILPDC+TV +NTA VG TS + S
Sbjct: 27 CAAFLANYNSNSDAKIVFDNEHYSLPPWSISILPDCKTVVYNTATVGVHTSQMQMWSDGA 206
Query: 551 S 553
S
Sbjct: 207 S 209
Score = 41.4 bits (84), Expect = 0.004
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -1 / -3
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL* 436
DV PT+AVL TV QSG ML D GGRL*
Sbjct: 178 DV*TPTVAVL*TTVLQSGRMLIDQGGRL* 92
>gb|BU977196.1|BU977196 HA11A01r HA Hordeum vulgare subsp. vulgare cDNA clone HA11A01
5-PRIME, mRNA sequence
Length = 504
Score = 76.7 bits (161), Expect = 1e-013
Identities = 30/46 (65%), Positives = 32/46 (69%)
Frame = +2 / +3
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDE 178
F F+ GS NYYMY GGTNF RTAGGP TSYDYDAP+DE
Sbjct: 366 FAVARFVQKGGSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPLDE 503
Score = 51.9 bits (107), Expect = 3e-006
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = -1 / -3
Query: 177 SSIGAS*S*LVI*SGPPAVRSKLVPPKYM**FCKLP 70
SS GAS*S*LV+ GPPAVR K VPP YM** K P
Sbjct: 502 SSSGAS*S*LVVMKGPPAVRPKFVPPWYM**LIKEP 395
Score = 33.1 bits (66), Expect(2) = 4e-004
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++ RP +D +FAVARF Q+G ++
Sbjct: 327 GGTIRKRPVEDLSFAVARFVQKGGSF 404
Score = 31.3 bits (62), Expect = 4.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3 / -2
Query: 178 FVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
F+ W III+A + T+S KI S +HV++
Sbjct: 503 FIKWSIIIVACGDEGTSSGAPKICSAMVHVVV 408
Score = 29.5 bits (58), Expect(2) = 4e-004
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1 / +2
Query: 82 KLLHVFWWNQF*ADSWWSTSDN*L*L*CTN* 174
+LLHV W N+F A W S + L L*C+ *
Sbjct: 407 QLLHVPWRNKFWAHRWRSLHHHKLRL*CST* 499
>gb|BU979164.1|BU979164 HA15F11r HA Hordeum vulgare subsp. vulgare cDNA clone HA15F11
5-PRIME, mRNA sequence
Length = 631
Score = 76.2 bits (160), Expect = 1e-013
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +2 / +2
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y S + + + C+AFLANID+ +V GK+Y LP WSVSILPDC+ V N
Sbjct: 50 YMSLGQNAEAHVYKSGSLCAAFLANIDDQSDKTVTFNGKAYKLPAWSVSILPDCKNVVLN 229
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 230 TAQINSQVA 256
Score = 36.3 bits (73), Expect = 0.14
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
AVL T QSG MLTDH G L P T SS+ AR A
Sbjct: 234 AVLSTTFLQSGRMLTDHAGSLYALPLKVTVLSD*SSIFARNA 109
>gb|BU982047.1|BU982047 HA25F24r HA Hordeum vulgare subsp. vulgare cDNA clone HA25F24
5-PRIME, mRNA sequence
Length = 598
Score = 70.3 bits (147), Expect = 9e-012
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2 / +1
Query: 377 AFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGS 547
AFLANID K V + Y LP WSVSILPDC+ V FNTA+V +QT ++ G+
Sbjct: 1 AFLANIDSEKDRVVTFRNRQYDLPAWSVSILPDCKNVVFNTAKVRSQTLMVDMVPGT 171
Score = 34.5 bits (69), Expect = 0.50
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -1 / -3
Query: 507 TLAVLKATVSQSGSMLTDHGGR 442
T AVLK T QSG MLTD GR
Sbjct: 131 TFAVLKTTFLQSGRMLTDQAGR 66
>gb|CA018434.1|CA018434 HV08J20r HV Hordeum vulgare subsp. vulgare cDNA clone HV08J20
5-PRIME, mRNA sequence
Length = 662
Score = 70.3 bits (147), Expect = 9e-012
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2 / +3
Query: 377 AFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGS 547
AFLANID K V + Y LP WSVSILPDC+ V FNTA+V +QT ++ G+
Sbjct: 12 AFLANIDSEKDRVVTFRNRQYDLPAWSVSILPDCKNVVFNTAKVRSQTLMVDMVPGT 182
Score = 34.5 bits (69), Expect = 0.50
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = -1 / -2
Query: 507 TLAVLKATVSQSGSMLTDHGGR 442
T AVLK T QSG MLTD GR
Sbjct: 142 TFAVLKTTFLQSGRMLTDQAGR 77
>gb|BF254537.2|BF254537 HVSMEf0004E22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004E22f, mRNA sequence
Length = 884
Score = 50.6 bits (104), Expect = 7e-006
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2 / +3
Query: 428 GKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
G++Y LP WSVSILPDC+ V NTA++ + +
Sbjct: 12 GEAYKLPAWSVSILPDCKNVVLNTAQINSHVA 107
Score = 35.0 bits (70), Expect = 0.36
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL 439
AVL T QSGSMLTDH G L
Sbjct: 85 AVLSTTFLQSGSMLTDHAGSL 23
>gb|AV836393.1|AV836393 AV836393 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd11e15, mRNA
sequence
Length = 572
Score = 40.9 bits (83), Expect = 0.006
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2 / +3
Query: 83 NYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLK 217
N+ Y G + +TSYDYDAPI E+G + PK+ L+
Sbjct: 402 NFGFYNGANTGQNEFEYKADLTSYDYDAPIKEHGDVHNPKYKALR 536
>gb|AV834232.1|AV834232 AV834232 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags7m01, mRNA sequence
Length = 503
Score = 33.1 bits (66), Expect = 1.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2 / +2
Query: 26 CSRQCFCCCSFLSTW 70
C R CFCCC F W
Sbjct: 440 CGRCCFCCCFFCXCW 484
>gb|AV836641.1|AV836641 AV836641 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19p15, mRNA
sequence
Length = 583
Score = 33.1 bits (66), Expect = 1.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2 / +2
Query: 461 SILPDCETVAFNTARVGTQTS 523
SILPDC+T FNTA V T+
Sbjct: 14 SILPDCKTAVFNTATVKEPTA 76
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
Length = 261265
Score = 33.1 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2 / -1
Query: 425 FGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
FG S+ LP WS S L D + N + T+ N+ G+P
Sbjct: 239587 FGDSFILP*WSTSSLEDGGSDYSNNTTITTKGRQLNIGMGNP 239462
>gb|BU972447.1|BU972447 HB21K18r BC Hordeum vulgare subsp. vulgare cDNA clone HB21K18
5-PRIME, mRNA sequence
Length = 352
Score = 32.7 bits (65), Expect = 1.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2 / +3
Query: 269 GSPHYVKLGPMQEAHVYSSENVHTNGS 349
G ++L MQEAH+ S NVHT G+
Sbjct: 165 GGCKQIQLRKMQEAHLSSEANVHTQGT 245
>gb|CA013759.1|CA013759 HT09G12r HT Hordeum vulgare subsp. vulgare cDNA clone HT09G12
5-PRIME, mRNA sequence
Length = 299
Score = 32.7 bits (65), Expect = 1.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2 / +3
Query: 269 GSPHYVKLGPMQEAHVYSSENVHTNGS 349
G ++L MQEAH+ S NVHT G+
Sbjct: 165 GGCKQIQLRKMQEAHLSSEANVHTQGT 245
>gb|BG344879.1|BG344879 HVSMEg0016K10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016K10f, mRNA sequence
Length = 794
Score = 32.2 bits (64), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2 / +3
Query: 374 SAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTAR 505
S LAN+ E ++A W Y LPP ++ P F + R
Sbjct: 75 SESLANLQELEFAYAWSACACYPLPPSALPFAPTLRVAKFGSCR 206
>gb|AV909712.1|AV909712 AV909712 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak13l13 5', mRNA sequence
Length = 614
Score = 32.2 bits (64), Expect = 2.4
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 32 RQCFCCCSFLS 64
RQCFCCC FLS
Sbjct: 394 RQCFCCCYFLS 362
>gb|BJ450377.1|BJ450377 BJ450377 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29f06 5', mRNA sequence
Length = 599
Score = 32.2 bits (64), Expect = 2.4
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 32 RQCFCCCSFLS 64
RQCFCCC FLS
Sbjct: 365 RQCFCCCYFLS 333
>gb|BJ457795.1|BJ457795 BJ457795 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29f06 3', mRNA sequence
Length = 611
Score = 32.2 bits (64), Expect = 2.4
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 32 RQCFCCCSFLS 64
RQCFCCC FLS
Sbjct: 570 RQCFCCCYFLS 602
>gb|BQ461186.1|BQ461186 HE01P20r HE Hordeum vulgare subsp. vulgare cDNA clone HE01P20
5-PRIME, mRNA sequence
Length = 243
Score = 28.6 bits (56), Expect(2) = 4.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1 / -3
Query: 259 CSRWFTSLCKIRAHAGGTCVFQ*KCPHKWKHFRKFTVLL 375
C RW S + A AGGT + P +W+ R+ LL
Sbjct: 154 CRRWTRSRRRRGAPAGGTGAASRRTPWRWRWRRRGRPLL 38
Score = 18.9 bits (35), Expect(2) = 4.4
Identities = 4/6 (66%), Positives = 5/6 (83%)
Frame = +2 / -3
Query: 35 QCFCCC 52
+C CCC
Sbjct: 169 RCCCCC 152
>gb|BI949026.1|BI949026 HVSMEl0012B08f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0012B08f, mRNA sequence
Length = 751
Score = 31.3 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +1
Query: 389 WQEKLSKTVNFLKCFHLCGHFHW 321
W + LSK+ F + F LCG F W
Sbjct: 406 WDD*LSKSRYFSRKFQLCGEFSW 474
>gb|BQ461044.1|BQ461044 HE01G01r HE Hordeum vulgare subsp. vulgare cDNA clone HE01G01
5-PRIME, mRNA sequence
Length = 339
Score = 28.6 bits (56), Expect(2) = 6.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1 / -3
Query: 259 CSRWFTSLCKIRAHAGGTCVFQ*KCPHKWKHFRKFTVLL 375
C RW S + A AGGT + P +W+ R+ LL
Sbjct: 163 CRRWTRSRRRRGAPAGGTGAASRRTPWRWRWRRRGRPLL 47
Score = 18.9 bits (35), Expect(2) = 6.2
Identities = 4/6 (66%), Positives = 5/6 (83%)
Frame = +2 / -3
Query: 35 QCFCCC 52
+C CCC
Sbjct: 178 RCCCCC 161
>gb|BF630681.2|BF630681 HVSMEb0012O24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012O24f, mRNA sequence
Length = 741
Score = 30.9 bits (61), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1 / +2
Query: 318 YTCASCMGPNFT**GEPSTAVRADSQSLIAACRSFKC 208
Y C+ C PN P+ A + S S + CR+ KC
Sbjct: 425 YLCSQCAFPNVDPAKIPTFAPKLSSSSKLVGCRNPKC 535
>gb|BE195440.3|BE195440 HVSMEh0089K10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089K10f, mRNA sequence
Length = 988
Score = 30.9 bits (61), Expect = 6.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2 / -2
Query: 209 HLKDLHAAIKLCESALTAVDGSPHYVKLGPMQEAHVYSSENV 334
H+K + C + GS H+V GP +EAH+ +S ++
Sbjct: 930 HIKLRAPGARCCRPPPSGSKGSIHWVIRGPRKEAHLMASRSL 805
>gb|CA028817.1|CA028817 HZ63F10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63F10
5-PRIME, mRNA sequence
Length = 357
Score = 28.6 bits (56), Expect(2) = 6.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1 / -3
Query: 259 CSRWFTSLCKIRAHAGGTCVFQ*KCPHKWKHFRKFTVLL 375
C RW S + A AGGT + P +W+ R+ LL
Sbjct: 154 CRRWTRSRRRRGAPAGGTGAASRRTPWRWRWRRRGRPLL 38
Score = 18.9 bits (35), Expect(2) = 6.5
Identities = 4/6 (66%), Positives = 5/6 (83%)
Frame = +2 / -3
Query: 35 QCFCCC 52
+C CCC
Sbjct: 169 RCCCCC 152
>gb|CB877821.1|CB877821 HP06F02T HP Hordeum vulgare subsp. vulgare cDNA clone HP06F02
5-PRIME, mRNA sequence
Length = 392
Score = 28.6 bits (56), Expect(2) = 7.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1 / -3
Query: 259 CSRWFTSLCKIRAHAGGTCVFQ*KCPHKWKHFRKFTVLL 375
C RW S + A AGGT + P +W+ R+ LL
Sbjct: 165 CRRWTRSRRRRGAPAGGTGAASRRTPWRWRWRRRGRPLL 49
Score = 18.9 bits (35), Expect(2) = 7.1
Identities = 4/6 (66%), Positives = 5/6 (83%)
Frame = +2 / -3
Query: 35 QCFCCC 52
+C CCC
Sbjct: 180 RCCCCC 163
>gb|BM374145.1|BM374145 EBma03_SQ003_M10_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_M10 5', mRNA sequence
Length = 378
Score = 23.1 bits (44), Expect(3) = 7.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +2 / +3
Query: 32 RQCFCCCSF 58
+ C CCCSF
Sbjct: 81 QSCDCCCSF 107
Score = 19.9 bits (37), Expect(3) = 7.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2 / +2
Query: 452 WSVSILPDCETVA 490
WSV I P C +A
Sbjct: 173 WSVLIEPSCRFMA 211
Score = 19.4 bits (36), Expect(3) = 7.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = +1 / +3
Query: 103 WNQF*ADSWWSTSDN*L 153
W SWWS +*L
Sbjct: 138 WTNSVVQSWWSFGVS*L 188
>gb|BE193860.2|BE193860 HVSMEh0082L16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0082L16f, mRNA sequence
Length = 623
Score = 30.4 bits (60), Expect = 8.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2 / +1
Query: 161 HNHS*LSEVDHQLSAQNWFHQNTCNNFVSFPTLIKTSNSKSTVLSRPMWQ 12
HN+ + +H N FH N C++ F N+ S++ ++PM Q
Sbjct: 292 HNNPFHNNHNHTQQNHNHFHNNPCHHNNHFHNNHHFGNNTSSIAAQPMSQ 441
>gb|BG416324.2|BG416324 HVSMEk0011G03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0011G03f, mRNA sequence
Length = 997
Score = 30.4 bits (60), Expect = 8.7
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -2 / -3
Query: 485 QFHSLVVCSQTMVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHL 339
Q + +C++++ ++ + Q RLKH ++ + K +FLK F +
Sbjct: 800 QENEFALCTESLGMETRHHQSGRLKHFMINSTLVVLVPKERDFLKSFEI 654
>gb|BG414590.1|BG414590 HVSMEk0003A02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003A02f, mRNA sequence
Length = 863
Score = 25.4 bits (49), Expect(2) = 9.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2 / -1
Query: 416 LKHIYVHQCW 387
L+H Y HQCW
Sbjct: 392 LEHDYYHQCW 363
Score = 24.0 bits (46), Expect(2) = 9.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1 / -2
Query: 234 IAACRSFKCPHLGCLKIP 181
I + + CPHL C K P
Sbjct: 280 IVSLKVHLCPHLRCTKAP 227
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 298,294,266
Number of Sequences: 312970
Number of extensions: 4713857
Number of successful extensions: 46455
Number of sequences better than 10.0: 52
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6108006096
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)