TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815216.1|CN815216 HRO4507_B10_D19ZS5 Lib AA071E1X Aven... 25 0.57
gb|CN814967.1|CN814967 HRO4504_D09_H18ZS5 Lib AA071E1X Aven... 27 0.69
gb|CN819912.1|CN819912 HRO4407_G05_N09ZS5 Lib AA069E1X Aven... 27 0.95
gb|CN820167.1|CN820167 HRO4411_H09_P17ZS5 Lib AA069E1X Aven... 27 0.95
gb|CN820937.1|CN820937 HRO4421_F10_K19ZS5 Lib AA069E1X Aven... 27 0.95
gb|CN821202.1|CN821202 HRO4428_F05_L10ZS5 Lib AA069E1X Aven... 27 0.95
gb|CN820032.1|CN820032 HRO4410_D02_G04ZS5 Lib AA069E1X Aven... 26 1.3
emb|AX458011.1| Sequence 3 from Patent WO0246387 26 1.3
gb|CN816963.1|CN816963 HRO4526_G05_M10ZS5 Lib AA071E1X Aven... 22 1.5
gb|CN815889.1|CN815889 HRO4511_F03_L05ZS5 Lib AA071E1X Aven... 26 1.8
gb|CN820556.1|CN820556 HRO4413_G02_M03ZS5 Lib AA069E1X Aven... 21 2.1
gb|CN816216.1|CN816216 HRO4518_C03_E06ZS5 Lib AA071E1X Aven... 22 2.2
gb|CN814924.1|CN814924 HRO4504_A02_B04ZS5 Lib AA071E1X Aven... 25 2.5
gb|CN816324.1|CN816324 HRO4519_D11_H21ZS5 Lib AA071E1X Aven... 25 3.4
gb|CN817599.1|CN817599 HRO4463_E06_I11ZS5 Lib AA070E1X Aven... 25 3.4
gb|CN816013.1|CN816013 HRO4515_H10_P19ZS5 Lib AA071E1X Aven... 24 4.6
gb|CN816356.1|CN816356 HRO4519_G09_N17ZS5 Lib AA071E1X Aven... 24 4.6
gb|CN820538.1|CN820538 HRO4413_E07_I13ZS5 Lib AA069E1X Aven... 24 4.6
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 24 4.6
gb|CN817989.1|CN817989 HRO4472_H07_O14ZS5 Lib AA070E1X Aven... 23 4.9
gb|CN818213.1|CN818213 HRO4470_H07_P14ZS5 Lib AA070E1X Aven... 23 5.1
gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Aven... 23 5.9
gb|CN816478.1|CN816478 HRO4521_C01_E01ZS5 Lib AA071E1X Aven... 24 6.4
gb|CN816973.1|CN816973 HRO4526_H03_O06ZS5 Lib AA071E1X Aven... 24 6.4
gb|CN817151.1|CN817151 HRO4528_G09_N18ZS5 Lib AA071E1X Aven... 24 6.4
gb|CN817266.1|CN817266 HRO4464_F06_K12ZS5 Lib AA070E1X Aven... 24 6.4
gb|CN817833.1|CN817833 HRO4462_F11_L22ZS5 Lib AA070E1X Aven... 24 6.4
gb|CN818138.1|CN818138 HRO4456_F10_K20ZS5 Lib AA070E1X Aven... 24 6.4
gb|CN819296.1|CN819296 HRO4452_C12_E24ZS5 Lib AA070E1X Aven... 24 6.4
gb|CN820090.1|CN820090 HRO4411_A02_B03ZS5 Lib AA069E1X Aven... 24 6.4
gb|CN815365.1|CN815365 HRO4508_H04_P08ZS5 Lib AA071E1X Aven... 20 6.6
gb|CN816342.1|CN816342 HRO4519_F06_L11ZS5 Lib AA071E1X Aven... 20 7.1
gb|CN818511.1|CN818511 HRO4466_E12_J24ZS5 Lib AA070E1X Aven... 20 7.7
gb|BE439037.1|BE439037 CDO33_WHE2C0011F ITEC CDO Oat cDNA L... 20 7.9
gb|CN815418.1|CN815418 HRO4509_D10_G19ZS5 Lib AA071E1X Aven... 24 8.7
gb|CN816348.1|CN816348 HRO4519_F12_L23ZS5 Lib AA071E1X Aven... 24 8.7
gb|CN817509.1|CN817509 HRO4454_G05_N10ZS5 Lib AA070E1X Aven... 24 8.7
gb|CN817769.1|CN817769 HRO4461_C02_F03ZS5 Lib AA070E1X Aven... 24 8.7
gb|CN817910.1|CN817910 HRO4462_B03_D06ZS5 Lib AA070E1X Aven... 24 8.7
gb|CN819415.1|CN819415 HRO4405_G05_M09ZS5 Lib AA069E1X Aven... 24 8.7
gb|CN819609.1|CN819609 HRO4402_B05_C10ZS5 Lib AA069E1X Aven... 24 8.7
gb|CN820561.1|CN820561 HRO4413_G09_M17ZS5 Lib AA069E1X Aven... 24 8.7
gb|CN821117.1|CN821117 HRO4427_F11_L20ZS5 Lib AA069E1X Aven... 24 8.7
gb|CN821343.1|CN821343 HRO4424_C03_F06ZS5 Lib AA069E1X Aven... 24 8.7
gb|CN815127.1|CN815127 HRO4506_B09_C18ZS5 Lib AA071E1X Aven... 21 9.4
>gb|CN815216.1|CN815216 HRO4507_B10_D19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_B10_D19, mRNA sequence
Length = 754
Score = 25.4 bits (49), Expect(2) = 0.57
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1 / +3
Query: 19 TEVETNCCVVTRQH 60
T + TNCC+ R+H
Sbjct: 105 TSITTNCCLYFREH 146
Score = 18.0 bits (33), Expect(2) = 0.57
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3 / +2
Query: 75 SDDLAGRCHG 104
SDDL G HG
Sbjct: 455 SDDLHGVYHG 484
>gb|CN814967.1|CN814967 HRO4504_D09_H18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_D09_H18, mRNA sequence
Length = 266
Score = 27.2 bits (53), Expect = 0.69
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1 / +1
Query: 139 KDSKWQWRTNAEP*HLPARSSL 74
KDS QW T + P LPA ++L
Sbjct: 178 KDSALQWATCSSPERLPASTTL 243
>gb|CN819912.1|CN819912 HRO4407_G05_N09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_G05_N09, mRNA
sequence
Length = 751
Score = 26.7 bits (52), Expect = 0.95
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 57 LSCYYTTIGFYFSTC 13
L+CY++T ++ STC
Sbjct: 503 LTCYFSTTSYWLSTC 547
>gb|CN820167.1|CN820167 HRO4411_H09_P17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_H09_P17, mRNA
sequence
Length = 306
Score = 26.7 bits (52), Expect = 0.95
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 57 LSCYYTTIGFYFSTC 13
L+CY++T ++ STC
Sbjct: 99 LTCYFSTTSYWLSTC 143
>gb|CN820937.1|CN820937 HRO4421_F10_K19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_F10_K19, mRNA
sequence
Length = 740
Score = 26.7 bits (52), Expect = 0.95
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 57 LSCYYTTIGFYFSTC 13
L+CY++T ++ STC
Sbjct: 375 LTCYFSTTSYWLSTC 419
>gb|CN821202.1|CN821202 HRO4428_F05_L10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_F05_L10, mRNA
sequence
Length = 585
Score = 26.7 bits (52), Expect = 0.95
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 57 LSCYYTTIGFYFSTC 13
L+CY++T ++ STC
Sbjct: 204 LTCYFSTTSYWLSTC 248
>gb|CN820032.1|CN820032 HRO4410_D02_G04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_D02_G04, mRNA
sequence
Length = 553
Score = 26.3 bits (51), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1 / +3
Query: 37 CCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLC 141
CCVV+ + I A T* + Q + AI C++C
Sbjct: 366 CCVVSTMILKRICACT*FETIP*QLVLAI*YCFVC 470
>emb|AX458011.1| Sequence 3 from Patent WO0246387
Length = 1323
Score = 26.3 bits (51), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1 / +2
Query: 178 KGCRSQSNISV*GKDSKWQWRTNAE 104
KGC S+S+ S *G ++ WR + E
Sbjct: 1094 KGCCSKSSPSQ*GTGQRFSWR*SKE 1168
>gb|CN816963.1|CN816963 HRO4526_G05_M10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G05_M10, mRNA sequence
Length = 869
Score = 21.7 bits (41), Expect(2) = 1.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1 / +1
Query: 1 AAARAGTEVETNCCVVTRQHP 63
A A A T + CC R HP
Sbjct: 238 ARAAALTSSPSRCCSCPRLHP 300
Score = 20.3 bits (38), Expect(2) = 1.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = +3 / +2
Query: 93 RCHGSAFVRHCHL 131
RCH + CHL
Sbjct: 674 RCHHRPLLYRCHL 712
>gb|CN815889.1|CN815889 HRO4511_F03_L05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_F03_L05, mRNA sequence
Length = 744
Score = 25.8 bits (50), Expect = 1.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3 / -3
Query: 186 QLACIHGE*HCLRAMWN 236
QLAC E HCLR ++N
Sbjct: 76 QLACTLCERHCLRQLFN 26
>gb|CN820556.1|CN820556 HRO4413_G02_M03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_G02_M03, mRNA
sequence
Length = 627
Score = 20.8 bits (39), Expect(2) = 2.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1 / +1
Query: 178 SFANLHVFMVSNIAFAQCGIESC 246
SFA L + + + +CG +SC
Sbjct: 331 SFAQLWIARL*QVGD*RCGFKSC 399
Score = 20.3 bits (38), Expect(2) = 2.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1 / +2
Query: 1 AAARAGTEVETNCC 42
A A GT+ NCC
Sbjct: 260 ALAMPGTDCMMNCC 301
>gb|CN816216.1|CN816216 HRO4518_C03_E06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_C03_E06, mRNA sequence
Length = 684
Score = 22.1 bits (42), Expect(2) = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1 / +2
Query: 127 ICYLCLKQRYLIETYIPSFANL 192
+C CL LIE PSFA L
Sbjct: 485 VCVCCLFVCLLIEGCNPSFAIL 550
Score = 18.9 bits (35), Expect(2) = 2.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 107 SVCSPLPFAIF 139
+VC P+P IF
Sbjct: 292 NVCEPVPGIIF 324
>gb|CN814924.1|CN814924 HRO4504_A02_B04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_A02_B04, mRNA sequence
Length = 576
Score = 25.4 bits (49), Expect = 2.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2 / -2
Query: 128 FAIFASNRDI*LRPTSLPLPTCMYS 202
F++ +D L+ +LP+P C YS
Sbjct: 98 FSVILRPQDRVLKTEALPVPLCQYS 24
>gb|CN816324.1|CN816324 HRO4519_D11_H21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_D11_H21, mRNA sequence
Length = 807
Score = 24.9 bits (48), Expect = 3.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2 / -3
Query: 81 HRFDFFRMLSCYY 43
HRF F+ +SC+Y
Sbjct: 634 HRFSFYH*VSCFY 596
>gb|CN817599.1|CN817599 HRO4463_E06_I11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_E06_I11, mRNA sequence
Length = 722
Score = 24.9 bits (48), Expect = 3.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1 / -3
Query: 172 IPSFANLHVFMVSNIAFAQCGIES 243
IPS +N H+F+ S+I + G ++
Sbjct: 543 IPSESNTHIFLGSSIITSSSGYQA 472
>gb|CN816013.1|CN816013 HRO4515_H10_P19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_H10_P19, mRNA sequence
Length = 538
Score = 24.4 bits (47), Expect = 4.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 57 LSCYYTTIGFYFSTC 13
+SC+YT + Y S+C
Sbjct: 284 ISCFYTWL*IYLSSC 328
>gb|CN816356.1|CN816356 HRO4519_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_G09_N17, mRNA sequence
Length = 405
Score = 24.4 bits (47), Expect = 4.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1 / +2
Query: 190 SWQRKGCRSQSN 155
+W R+GC QSN
Sbjct: 50 TWNRRGCTHQSN 85
>gb|CN820538.1|CN820538 HRO4413_E07_I13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E07_I13, mRNA
sequence
Length = 624
Score = 24.4 bits (47), Expect = 4.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2 / +1
Query: 84 GHRFDFFRMLSCYYT 40
GHR R L CYYT
Sbjct: 520 GHRSILVRYLFCYYT 564
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 24.4 bits (47), Expect = 4.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1 / -1
Query: 247 CRIQFHIARRQCYSP*IHASWQ 182
C H+ARRQ P SWQ
Sbjct: 409 CVHSIHLARRQSVMPSPTGSWQ 344
>gb|CN817989.1|CN817989 HRO4472_H07_O14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_H07_O14, mRNA sequence
Length = 628
Score = 22.6 bits (43), Expect(2) = 4.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2 / -2
Query: 182 LPTCMYSW*VTLPSRNVELNPA 247
LP+C S LP ELNPA
Sbjct: 102 LPSCSCSNSCPLPGPAPELNPA 37
Score = 17.1 bits (31), Expect(2) = 4.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +3 / -2
Query: 84 LAGRCHGSAFVRHC 125
LA RC +HC
Sbjct: 339 LACRCSSLGHEQHC 298
>gb|CN818213.1|CN818213 HRO4470_H07_P14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_H07_P14, mRNA sequence
Length = 665
Score = 22.6 bits (43), Expect(2) = 5.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2 / -2
Query: 182 LPTCMYSW*VTLPSRNVELNPA 247
LP+C S LP ELNPA
Sbjct: 142 LPSCSCSNSCPLPGPAPELNPA 77
Score = 17.1 bits (31), Expect(2) = 5.1
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +3 / -2
Query: 84 LAGRCHGSAFVRHC 125
LA RC +HC
Sbjct: 379 LACRCSSLGHEQHC 338
>gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E10_J20, mRNA
sequence
Length = 776
Score = 22.6 bits (43), Expect(2) = 5.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1 / -2
Query: 10 RAGTEVETNCC 42
RAGT+ T CC
Sbjct: 604 RAGTDTGTGCC 572
Score = 17.1 bits (31), Expect(2) = 5.9
Identities = 4/9 (44%), Positives = 8/9 (88%)
Frame = +1 / -3
Query: 121 IAICYLCLK 147
++IC +CL+
Sbjct: 378 VSICQVCLQ 352
>gb|CN816478.1|CN816478 HRO4521_C01_E01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C01_E01, mRNA sequence
Length = 629
Score = 24.0 bits (46), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2 / -3
Query: 107 SVCSPLPFAIFASNRDI*LRPT 172
S C PLP A+ + I*L+P+
Sbjct: 72 SCCPPLPLAVATTFLVI*LKPS 7
>gb|CN816973.1|CN816973 HRO4526_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_H03_O06, mRNA sequence
Length = 669
Score = 24.0 bits (46), Expect = 6.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3 / +1
Query: 168 LHPFLCQLACIHGE*HCLRAMWN*IL 245
LHPFLC L + C W+ +L
Sbjct: 508 LHPFLCSLNHAVQKLFCFIRAWHNVL 585
>gb|CN817151.1|CN817151 HRO4528_G09_N18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_G09_N18, mRNA sequence
Length = 630
Score = 24.0 bits (46), Expect = 6.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2 / +2
Query: 201 EYMQVGKGRDVGLNQISLFE 142
++ QVGK +G+N+I L E
Sbjct: 17 DWEQVGKHEKMGMNEIKLKE 76
>gb|CN817266.1|CN817266 HRO4464_F06_K12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_F06_K12, mRNA sequence
Length = 793
Score = 24.0 bits (46), Expect = 6.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / +1
Query: 54 SCYYTTIGFYFSTC 13
SCY +TI FY C
Sbjct: 214 SCYVSTIKFYMIIC 255
>gb|CN817833.1|CN817833 HRO4462_F11_L22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_F11_L22, mRNA sequence
Length = 704
Score = 24.0 bits (46), Expect = 6.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3 / +2
Query: 72 QSDDLAGRCHGSAFVRHC 125
Q D + CH ++FV HC
Sbjct: 551 QVDVVQS*CHANSFVLHC 604
>gb|CN818138.1|CN818138 HRO4456_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_F10_K20, mRNA sequence
Length = 868
Score = 24.0 bits (46), Expect = 6.4
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +3 / +3
Query: 96 CHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLACIHGE*HCLRAM 230
C S C L Q + F D+ L CIH HC A+
Sbjct: 645 CTVSVLCLVCRCLV*LQVQCFHCDILGVWYGLICIHRHVHCSHAI 779
>gb|CN819296.1|CN819296 HRO4452_C12_E24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_C12_E24, mRNA sequence
Length = 834
Score = 24.0 bits (46), Expect = 6.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3 / -3
Query: 68 SSGCCLVTTQQLVSTSVPA 12
SSGC LV L S SVPA
Sbjct: 469 SSGCFLVDVFVLRSRSVPA 413
>gb|CN820090.1|CN820090 HRO4411_A02_B03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_A02_B03, mRNA
sequence
Length = 697
Score = 24.0 bits (46), Expect = 6.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2 / +3
Query: 104 LSVCSPLPFAIFA 142
+S+ SP+PF IFA
Sbjct: 123 ISMASPIPFRIFA 161
>gb|CN815365.1|CN815365 HRO4508_H04_P08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H04_P08, mRNA sequence
Length = 641
Score = 19.9 bits (37), Expect(2) = 6.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2 / -2
Query: 170 TSLPLPTCMYSW 205
TSLP+ YSW
Sbjct: 181 TSLPMA*LAYSW 146
Score = 19.4 bits (36), Expect(2) = 6.6
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3 / -3
Query: 123 CHLLSLPQT 149
CH+L PQT
Sbjct: 294 CHMLPEPQT 268
>gb|CN816342.1|CN816342 HRO4519_F06_L11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F06_L11, mRNA sequence
Length = 692
Score = 19.9 bits (37), Expect(2) = 7.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2 / -1
Query: 170 TSLPLPTCMYSW 205
TSLP+ YSW
Sbjct: 161 TSLPMA*LAYSW 126
Score = 19.4 bits (36), Expect(2) = 7.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3 / -2
Query: 123 CHLLSLPQT 149
CH+L PQT
Sbjct: 274 CHMLPEPQT 248
>gb|CN818511.1|CN818511 HRO4466_E12_J24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_E12_J24, mRNA sequence
Length = 765
Score = 20.3 bits (38), Expect(2) = 7.7
Identities = 7/17 (41%), Positives = 7/17 (41%)
Frame = +3 / +1
Query: 168 LHPFLCQLACIHGE*HC 218
L LC L C H C
Sbjct: 169 LRSLLCFLLCFHASCRC 219
Score = 18.9 bits (35), Expect(2) = 7.7
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1 / +2
Query: 37 CCVVTRQHPEEIKA 78
CC T QH E A
Sbjct: 146 CCSETHQHCEAFYA 187
>gb|BE439037.1|BE439037 CDO33_WHE2C0011F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO33_WHE2C0011, mRNA sequence
Length = 221
Score = 19.9 bits (37), Expect(2) = 7.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1 / +1
Query: 163 QSNISV*GKDSKWQWR 116
Q ISV* S W W+
Sbjct: 160 QQPISV*TLKSAWHWQ 207
Score = 17.6 bits (32), Expect(2) = 7.9
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = -1 / +1
Query: 127 WQWR 116
WQWR
Sbjct: 202 WQWR 213
>gb|CN815418.1|CN815418 HRO4509_D10_G19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D10_G19, mRNA sequence
Length = 629
Score = 23.5 bits (45), Expect = 8.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 91 VDVTAQRLFAIAICYLC 141
+ V+ RL A ++C+LC
Sbjct: 396 LSVSCHRLVAYSVCWLC 446
>gb|CN816348.1|CN816348 HRO4519_F12_L23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F12_L23, mRNA sequence
Length = 640
Score = 23.5 bits (45), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / -3
Query: 75 FDFFRMLSCYYTTIGFYFSTCP 10
F +F ML+C + YFS P
Sbjct: 533 FSWFNMLTCGKNILTNYFSCMP 468
>gb|CN817509.1|CN817509 HRO4454_G05_N10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_G05_N10, mRNA sequence
Length = 480
Score = 23.5 bits (45), Expect = 8.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1 / +3
Query: 139 KDSKWQWRTNAEP*HLPAR 83
KDSK + N P H+P R
Sbjct: 288 KDSKIYGKPNGTPFHIPVR 344
>gb|CN817769.1|CN817769 HRO4461_C02_F03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_C02_F03, mRNA sequence
Length = 361
Score = 23.5 bits (45), Expect = 8.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 91 VDVTAQRLFAIAICYLC 141
+ V+ RL A ++C+LC
Sbjct: 186 LSVSCHRLVAYSVCWLC 236
>gb|CN817910.1|CN817910 HRO4462_B03_D06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_B03_D06, mRNA sequence
Length = 613
Score = 23.5 bits (45), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2 / -1
Query: 176 LPLPTCMYSW*VTLPS 223
LP +C+ SW T+PS
Sbjct: 151 LPRSSCLISWRGTIPS 104
>gb|CN819415.1|CN819415 HRO4405_G05_M09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_G05_M09, mRNA
sequence
Length = 530
Score = 23.5 bits (45), Expect = 8.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 91 VDVTAQRLFAIAICYLC 141
+ V+ RL A ++C+LC
Sbjct: 390 LSVSCHRLVAYSVCWLC 440
>gb|CN819609.1|CN819609 HRO4402_B05_C10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B05_C10, mRNA
sequence
Length = 786
Score = 23.5 bits (45), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / +1
Query: 75 FDFFRMLSCYYTTIGFYFSTCP 10
F +F ML+C + YFS P
Sbjct: 283 FSWFNMLTCGKNILTNYFSCMP 348
>gb|CN820561.1|CN820561 HRO4413_G09_M17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_G09_M17, mRNA
sequence
Length = 802
Score = 23.5 bits (45), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2 / -1
Query: 128 FAIFASNRDI*LRPTSLPLPTCMY 199
F++ +D L+ +LP+P C Y
Sbjct: 307 FSVILRPQDRVLKTEALPVPLCQY 236
>gb|CN821117.1|CN821117 HRO4427_F11_L20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F11_L20, mRNA
sequence
Length = 843
Score = 23.5 bits (45), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2 / -2
Query: 54 SCYYTTIGFYFSTCP 10
+CYY T+ Y +CP
Sbjct: 92 TCYYFTLEPYTKSCP 48
>gb|CN821343.1|CN821343 HRO4424_C03_F06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C03_F06, mRNA
sequence
Length = 454
Score = 23.5 bits (45), Expect = 8.7
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 34 NCCVVTRQHPEE 69
+CCV T++ PE+
Sbjct: 159 SCCVTTKKRPED 194
>gb|CN815127.1|CN815127 HRO4506_B09_C18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_B09_C18, mRNA sequence
Length = 695
Score = 21.2 bits (40), Expect(2) = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1 / +1
Query: 37 CCVVTRQHPEEIKAMT 84
C +R HPE++ + T
Sbjct: 337 CLSYSRNHPEKVSSST 384
Score = 17.6 bits (32), Expect(2) = 9.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1 / +2
Query: 172 IPSFANLHVFMVSNI 216
+PS A H F V +I
Sbjct: 512 VPSSAEAHYFGVYSI 556
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,144,828
Number of Sequences: 8143
Number of extensions: 37796
Number of successful extensions: 4674
Number of sequences better than 10.0: 46
length of database: 1,567,487
effective HSP length: 39
effective length of database: 1,249,910
effective search space used: 52496220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)