TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBN10e11.xg.2.4
         (664 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814661.1|CN814661  HRO4501_B06_C11ZS5 Lib AA071E1X Aven...    94   4e-039

>gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4501_B06_C11, mRNA sequence
          Length = 842

 Score = 94.1 bits (199), Expect(3) = 4e-039
 Identities = 36/51 (70%), Positives = 41/51 (80%)
 Frame = -2 / +2

                                                              
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
           G Y E+YRVLKPGQ FA+ EWC+TD +DPNNA H   K EIELG+GLPDIR
Sbjct: 482 GCYKEIYRVLKPGQCFAVYEWCITDHYDPNNATHKRIKDEIELGNGLPDIR 634




 Score = 72.1 bits (151), Expect(2) = 5e-021
 Identities = 32/50 (64%), Positives = 40/50 (80%)
 Frame = +2 / -3

                                                             
Query: 5   MSGRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TP 154
           +SGRP PSSIS+L++  +AL GS  SV HHS +AK+CPGF+TR* SL* P
Sbjct: 630 ISGRPLPSSISSLILLWVALFGS**SVMHHSYTAKHCPGFNTR*ISL*QP 481




 Score = 70.3 bits (147), Expect(3) = 4e-039
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = -2 / +2

                                                   
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
           AGLS  C  +K DFMNMP +DNTFDA YAI+ATC+AP+ V
Sbjct: 362 AGLSGTCDFVKADFMNMPFSDNTFDAVYAIEATCHAPDPV 481




 Score = 43.2 bits (88), Expect(2) = 5e-021
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +1 / -2

                                                         
Query: 250 LRCITCSLYCIGRIKGIISYWHIHEVPLQGAALLTQTC*KDVLLQP 387
           +RC+TC L  I  IK +I   HIHEV L      T++C    LL P
Sbjct: 475 IRCMTCCLNGINSIKSVIGERHIHEVCLDKVTSSTKSCQTIELLSP 338




 Score = 29.9 bits (59), Expect(3) = 4e-039
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2 / +2

                              
Query: 513 SSTXXXGLXXNDYHVSRGK 457
           SST   GL  NDY ++RGK
Sbjct: 290 SSTSVTGLNNNDYQITRGK 346



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,532,362
Number of Sequences: 8143
Number of extensions: 92129
Number of successful extensions: 995
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 218135618
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)