TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Aven... 127 2e-040
>gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_B06_C11, mRNA sequence
Length = 842
Score = 127 bits (272), Expect(3) = 2e-040
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3 / +2
Query: 216 RYPGETSREAIKRHQHFMALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLTNNDY 395
R+ GE+ RE+IKRH+HF+ALQL LK GMKVLDVGCGIGGPL EIARFSSTS+TGL NNDY
Sbjct: 149 RWNGESLRESIKRHEHFLALQLELKPGMKVLDVGCGIGGPLREIARFSSTSVTGLNNNDY 328
Query: 396 HVSRGK 413
++RGK
Sbjct: 329 QITRGK 346
Score = 90.4 bits (191), Expect(2) = 5e-021
Identities = 41/70 (58%), Positives = 50/70 (71%)
Frame = -2 / -3
Query: 424 KMQTLPLETW*SLLVNPVIEVELNLAISIKGPPIPHPTSRTFIPFLSPNCSAIKCWCRLM 245
++ + PL *SLL NPV EVELNLAIS+ GPPIP PTS+TFIP + + A KC CRLM
Sbjct: 357 RLSSFPLVI**SLLFNPVTEVELNLAISLNGPPIPQPTSKTFIPGFNSS*RARKCSCRLM 178
Query: 244 ASREVSPGYL 215
S + SP +L
Sbjct: 177 LSLKDSPFHL 148
Score = 47.8 bits (98), Expect(3) = 2e-040
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 3 YDLVTGFYEYGWGDSFHFA 59
YDL T FYEYGWG+SFHFA
Sbjct: 89 YDLSTSFYEYGWGESFHFA 145
Score = 26.7 bits (52), Expect(2) = 5e-021
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2 / -3
Query: 58 AKWNESPHPYS*KPVTRS* 2
AK +SP PYS*K V RS*
Sbjct: 144 AK*KDSPQPYS*KLVERS* 88
Score = 25.8 bits (50), Expect(3) = 2e-040
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3 / +2
Query: 507 AXLSEXCCXLXGDXXNXXXADNTFD 581
A LS C + D N +DNTFD
Sbjct: 362 AGLSGTCDFVKADFMNMPFSDNTFD 436
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,323,105
Number of Sequences: 8143
Number of extensions: 87784
Number of successful extensions: 1489
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 185047631
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)